RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1670
(68 letters)
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
M + + E+ + + + K + + KG +T ER L LL
Sbjct: 2 MYEKPPVEKLIEELRQLKEKAYKGGGDERIQFQHSKGKLTARER---LALLF 50
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase;
HET: MCA; 1.90A {Propionibacterium freudenreichii}
SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 29.8 bits (68), Expect = 0.033
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
+ + ++ +R + E K+ +G T ER L LL
Sbjct: 13 EGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARER---LNNLL 54
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A
3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 29.5 bits (67), Expect = 0.057
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
K A++ R+ E + K+ KG +T ER + LLL
Sbjct: 15 AGKLADLRRRIEEATHAGSARAVEKQHAKGKLTARER---IDLLL 56
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 29.1 bits (66), Expect = 0.069
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
K AE+ ++R E + E + K KG +T ER + LL
Sbjct: 26 AGKLAELHKRREESLHPVGEDAVEKVHAKGKLTARER---IYALL 67
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 29.1 bits (66), Expect = 0.081
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
K +++ +RA R + + +G +T ER + LLL
Sbjct: 16 PRGSHMMKDILEQLEDRRAAARLGGGQKRIDAQHGRGKLTARER---VDLLL 64
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 28.7 bits (65), Expect = 0.085
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
+ K E+ + E+ + K+ + G +T ER L LLL
Sbjct: 16 RDKIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWER---LELLL 57
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 25.7 bits (57), Expect = 1.0
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 16 RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERK 66
K +++M EA K G + E + LR L+K EE K +R
Sbjct: 486 SKEC--KRKMGEAYALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRP 534
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain,
beta-sandwich domai glycosyl hydrolase, glycosida
hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB:
3k46_A* 3k4d_A* 3lpg_A* 3k4a_A
Length = 605
Score = 25.8 bits (57), Expect = 1.1
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 7/27 (25%)
Query: 35 KKGFMTPERKKKLRLLLRKKAAEELKK 61
KKG T +RK K AA L+K
Sbjct: 569 KKGIFTRDRKP-------KSAAFLLQK 588
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix,
ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB:
3u9s_B* 3u9t_B
Length = 555
Score = 25.6 bits (57), Expect = 1.2
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
A + + + + A++A+ + +G + ER + LL
Sbjct: 40 ATMLEQVNALRTLLGRIHEGGGSAAQARHSARGKLLVRER---INRLL 84
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 25.5 bits (56), Expect = 1.3
Identities = 8/62 (12%), Positives = 23/62 (37%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQE 64
K + + +++ +R++ + K A + P ++K + K + E +
Sbjct: 308 DLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPEEVILEH 367
Query: 65 RK 66
Sbjct: 368 HH 369
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 25.2 bits (55), Expect = 1.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 30 KAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERK 66
+ KK ++ RK +L+ LL + A +EL++E E +
Sbjct: 2 EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEER 38
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 25.3 bits (56), Expect = 1.7
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 2 ADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61
A+ + ++D ++ +E K KAK+ +K +L KK E +
Sbjct: 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED-AKDLIAEKEKLSNEKKEIIEKEA 95
Query: 62 EQERKV 67
E ++ +
Sbjct: 96 EADKNL 101
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 24.0 bits (52), Expect = 4.1
Identities = 6/66 (9%), Positives = 15/66 (22%), Gaps = 8/66 (12%)
Query: 3 DDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKE 62
D K+ + + + + A+ L E
Sbjct: 629 DTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRG--------EGSSSPAKAHAPKAQPLTPE 680
Query: 63 QERKVS 68
Q+ + +
Sbjct: 681 QDAEFT 686
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 23.9 bits (52), Expect = 4.9
Identities = 8/67 (11%), Positives = 14/67 (20%), Gaps = 3/67 (4%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGF--MTPERKKKLRLLLRK-KAAE 57
D Q + + + G K L L + + E
Sbjct: 942 SNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 1001
Query: 58 ELKKEQE 64
+L
Sbjct: 1002 DLHHHHH 1008
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 23.7 bits (52), Expect = 5.6
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 18 RAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQE 64
EV A KA+ A + ER L K A+ L +++E
Sbjct: 39 TEEVDYVYASAKKAQPAWRALSYIERAAYLH-----KVADILMRDKE 80
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 23.8 bits (52), Expect = 6.2
Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 4 DAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLR-KKAAEELKKE 62
+ + +I E E + + + L R ++ ++L
Sbjct: 76 WQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLL 135
Query: 63 QER 65
+
Sbjct: 136 YPK 138
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 23.4 bits (51), Expect = 6.8
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 10 KQAEIDRKRAEVRKRMEEASKAKKAK 35
K+ ++++ E+ + M+ S+A++AK
Sbjct: 206 KELDLEKLERELLEEMKHPSRARRAK 231
>2p4v_A Transcription elongation factor GREB; transcript cleavage,
GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Length = 158
Score = 23.3 bits (51), Expect = 7.3
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 4 DAAKKAKQAEIDRKRAEVRKRMEEA 28
KK + EIDR+ + K ME
Sbjct: 49 QYNKK-RLREIDRRVRYLTKCMENL 72
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 23.5 bits (51), Expect = 7.5
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEE-ASKAKKAKKGFMTPERKKK 46
+ + + + + A KA++ FM E+ K
Sbjct: 64 LKQERIDQILREHDAAIAQAETAGTDAPTEAALKAERTFMAGEKAKP 110
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 23.0 bits (50), Expect = 9.7
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 7 KKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLR 52
K + I++ AE K + + KG MTP + ++ +R
Sbjct: 343 KDINEHGIEQGLAEAAKLLV-----GRVDKGRMTPAKMAEVLNGIR 383
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 23.1 bits (50), Expect = 9.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 44 KKKLRLLLRKKAAEELKKEQERK 66
K+ + LL K E+LKKE E +
Sbjct: 423 KQNMFALLGKPGFEDLKKELEER 445
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.120 0.291
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,002,933
Number of extensions: 53206
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 121
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.3 bits)