RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1670
(68 letters)
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 258
Score = 27.0 bits (59), Expect = 0.15
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 9 AKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLLRKKAAEEL 59
K AE+ ++R E + E + K KG +T ER + LL + + EL
Sbjct: 8 GKLAELHKRREESLHPVGEDAVEKVHAKGKLTARER---IYALLDEDSFVEL 56
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium
freudenreichii [TaxId: 1744]}
Length = 253
Score = 25.6 bits (55), Expect = 0.44
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ER 43
+ + + ++ +R + E K+ +G T ER
Sbjct: 4 STMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARER 43
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 25.5 bits (55), Expect = 0.45
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 10 KQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLL 51
K A++ R+ E + K+ KG +T ++++ LLL
Sbjct: 8 KLADLRRRIEEATHAGSARAVEKQHAKGKLTA--RERIDLLL 47
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 25.3 bits (54), Expect = 0.61
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 35 KKGFMTPERKKKLRLLLRKKAAEELKKE 62
KKG T +R+ K L ++ ++ E
Sbjct: 277 KKGIFTRQRQPKSAAFLLRERYWKIANE 304
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 24.7 bits (53), Expect = 0.82
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
+ K E+ + E+ + K+ + G +T ER L LLL
Sbjct: 4 RDKIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWER---LELLL 45
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 23.8 bits (51), Expect = 1.6
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 23 KRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
A AK + G LR+ K + +K ++
Sbjct: 53 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDK 95
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 23.6 bits (50), Expect = 2.8
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 13 EIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK------KEQERK 66
AE+ + + + A K + E+ K + Q RK
Sbjct: 946 NTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRK 1005
Query: 67 V 67
+
Sbjct: 1006 I 1006
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 174
Score = 22.9 bits (48), Expect = 3.8
Identities = 4/26 (15%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 39 MTPERKKKLRLLLRKKAAEELKKEQE 64
+ E KK+ +K+ +++ +
Sbjct: 146 LNEEEKKQF-----QKSVDDVMALNK 166
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 21.9 bits (46), Expect = 8.7
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 19 AEVRKRMEEASKAK-KAKKGFMTPERKKKLRLLLRKKAAEELKKEQERK 66
E + E K + K MT E +L +A EELK +QE
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAEL-----ARATEELKLKQETP 257
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 21.7 bits (45), Expect = 9.3
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 5/26 (19%)
Query: 39 MTPERKKKLRLLLRKKAAEELKKEQE 64
+ + +K+AE +KK E
Sbjct: 143 LDKDEIIAF-----RKSAEIIKKYCE 163
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 21.7 bits (45), Expect = 9.6
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 5/26 (19%)
Query: 39 MTPERKKKLRLLLRKKAAEELKKEQE 64
+ E K K +A E K+ +
Sbjct: 143 LNSEEKAKF-----DEAIAETKRMKA 163
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 21.8 bits (45), Expect = 9.7
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEA-SKAKKAKK 36
+ A E+ EVRK +E+A A +
Sbjct: 297 NSNLASVEELKEIDVEVRKEIEDAAQFATADPE 329
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.307 0.120 0.291
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 231,768
Number of extensions: 9857
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 50
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.3 bits)