BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16700
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 315 bits (807), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/368 (44%), Positives = 228/368 (61%), Gaps = 3/368 (0%)
Query: 6 KGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTS 65
K + IV+A RTP G++GG F TS+ QL T+A K A+ +N +D V+IGNVL
Sbjct: 5 KDVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 66 SDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMS 125
++ R ++++ GIP P+ +N+LCGSG +SV AQ+I +G++ +V+ GG +NMS
Sbjct: 65 GQNV--ARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMS 122
Query: 126 QAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFA 185
QAP+ V RFG +G ++ L GL D + + M +TAE +A KF TR+ D+ A
Sbjct: 123 QAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLA 182
Query: 186 LRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPV-SVDADEHPKPQTTLETLAKLPPVFKKD 244
L SQ + A FK EI PV+V I+R + ++D DE+PK T E L+KL P FKKD
Sbjct: 183 LESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLKPAFKKD 242
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASGI DGA +I+ S+ + PLA++ Y+ GV+P +MG GP PA +
Sbjct: 243 GTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRK 302
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
LK AGL +NDIDL+E NEAF AQ LA GGAIALGHP+GASG+RI
Sbjct: 303 ALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGARIL 362
Query: 365 AHLVHELR 372
L++E++
Sbjct: 363 VTLIYEMQ 370
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/365 (43%), Positives = 226/365 (61%), Gaps = 2/365 (0%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
+ I +A RT G++GG F S+ +L AAK A++ I P+++D ++G VL T+
Sbjct: 9 VVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVL--TAGL 66
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
+ R ++L GIPVEKPA+ IN +CGSG +SV +Q I GD+ I+L GG +NMS +
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 128 PHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFALR 187
P+ V + R+G +G ++ + GL+D + M +TAE +A+++ ITR++ DE AL
Sbjct: 127 PYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALA 186
Query: 188 SQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKDGVV 247
SQ +KAQ G F EI PV + ++ VD DE+ KP TT+E LAKL P FKKDG V
Sbjct: 187 SQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKKDGTV 246
Query: 248 TAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLK 307
TAG+ASGI DGA +++ ++ + + PLA +V Y GVDP IMG GP PA K L+
Sbjct: 247 TAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKALE 306
Query: 308 IAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRITAHL 367
A + + DIDLVE NEAF AQ++A GGAIA+GHP+G SG+RI L
Sbjct: 307 AANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTL 366
Query: 368 VHELR 372
++E++
Sbjct: 367 LYEMK 371
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 212/365 (58%), Gaps = 3/365 (0%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
+ I AA R+P GT+GG + +L + A++ G + P VD V++G+ + T D
Sbjct: 7 VVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRT--D 64
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
R +L G P I R SG Q++++ A I G S++V+ GGV+ MS +
Sbjct: 65 EANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSS 124
Query: 128 PHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFALR 187
P+A++ R+G L E+ DT+W L D + M TAE L +++ ITR++ DE ALR
Sbjct: 125 PYALKQHRWGQRLQ-HGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVALR 183
Query: 188 SQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKDGVV 247
S TL KA ++G F +I P+ + +RK V DEHP+ T E LA L P F+KDG V
Sbjct: 184 SHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSV 243
Query: 248 TAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLK 307
TAG+ASG+ DG+ +++ SE K L PLAR+VGYSV GVDP IMGIGP+PAI+ L+
Sbjct: 244 TAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAIRKGLE 303
Query: 308 IAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRITAHL 367
L D DL+EINEAF AQ LA G + LGHP+G +G+RIT L
Sbjct: 304 KVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGARITVSL 363
Query: 368 VHELR 372
+HEL+
Sbjct: 364 IHELK 368
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 216/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+GHP+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 274 bits (701), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 216/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+GHP+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 273 bits (699), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 215/365 (58%), Gaps = 3/365 (0%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
I I +A RT G++ G F T + +L A LE + V+ V++G VL + +
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--PAGE 59
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++MS A
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 128 PHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFALR 187
PH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D FA+
Sbjct: 120 PHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 178
Query: 188 SQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKDGVV 247
SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+G V
Sbjct: 179 SQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTV 238
Query: 248 TAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLK 307
TAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA + L+
Sbjct: 239 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 298
Query: 308 IAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRITAHL 367
AG + D+DLVE NEAF AQ A GGAIA+GHP+GASG+RI L
Sbjct: 299 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 358
Query: 368 VHELR 372
+ E++
Sbjct: 359 LFEMK 363
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 216/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE +EAF AQ A GGAIA+GHP+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 216/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE +EAF AQ A GGAIA+GHP+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 216/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+G+P+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 270 bits (691), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 215/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+G P+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 270 bits (690), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 215/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+G P+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 270 bits (690), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 215/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+L GSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+GHP+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 215/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+L GSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+GHP+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 214/365 (58%), Gaps = 3/365 (0%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
I I +A RT G++ G F T + +L A LE + V+ V++G VL + +
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--PAGE 59
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
R ++ G+P E A G+N+L GSG ++V G Q I GD+ I++ GG+++MS A
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 128 PHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFALR 187
PH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D FA+
Sbjct: 120 PHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 178
Query: 188 SQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKDGVV 247
SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+G V
Sbjct: 179 SQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTV 238
Query: 248 TAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLK 307
TAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA + L+
Sbjct: 239 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 298
Query: 308 IAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRITAHL 367
AG + D+DLVE NEAF AQ A GGAIA+GHP+GASG+RI L
Sbjct: 299 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 358
Query: 368 VHELR 372
+ E++
Sbjct: 359 LFEMK 363
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 216/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE +EAF AQ A GGAIA+G+P+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 267 bits (682), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 215/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+L GSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+G+P+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 214/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+L GSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+G P+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 214/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+L GSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE NEAF AQ A GGAIA+G P+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 260 bits (665), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 214/375 (57%), Gaps = 7/375 (1%)
Query: 1 MSAITKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNV 60
M+A + + IV+A RT G++ G L + K L+ + PE V V+ G+V
Sbjct: 1 MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV 60
Query: 61 LANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGG 120
LA + R S+ GIP PA + GSG ++V Q+I GDS IV+ GG
Sbjct: 61 LAAGCGQNPV--RQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGG 118
Query: 121 VDNMSQAPHAVRNIRFGVPLGGQMELEDT-LWTGLTDTYCKLPMALTAEKLADKFGITRD 179
++NMS+APH + +R GV +G +M L D+ L GLTD + M +TAE +A K+ ++R+
Sbjct: 119 MENMSKAPH-LAYLRTGVKIG-EMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSRE 176
Query: 180 KVDEFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPP 239
D+ A+ SQ + AQ AG F EI PV V+ ++ + V DE P+ + +E ++KL P
Sbjct: 177 DQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKP 236
Query: 240 VFKKDGV--VTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIG 297
F DG VT +ASGI DGA AV++ ++ LTPLAR+V +S VGV+PSIMGIG
Sbjct: 237 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIG 296
Query: 298 PSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLG 357
P PAIK + AG L D+D+ EINEAF A + A GGAIALGHPLG
Sbjct: 297 PIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLG 356
Query: 358 ASGSRITAHLVHELR 372
ASG RI L+H L
Sbjct: 357 ASGCRILVTLLHTLE 371
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 215/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE EAF AQ A GGAIA+GHP+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 209/372 (56%), Gaps = 10/372 (2%)
Query: 9 FIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTS-SD 67
+IV A RTP G +GG L A ++ + E V+ V G AN + D
Sbjct: 5 WIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAG--CANQAGED 62
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
+ + R L G PVE +NRLCGSG ++V A+ I AG+ ++ + GV++MS+A
Sbjct: 63 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 122
Query: 128 PHAVRNIRFGVPLGGQMELEDTL-WT----GLTDTYCKLPMALTAEKLADKFGITRDKVD 182
P+AV G P G + + TL W + Y M TAE LA+ +GI R++ D
Sbjct: 123 PYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQD 182
Query: 183 EFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFK 242
FAL S +A + G F+ E+ PV V ++ + V+ DE P+ T+LE LA L PVF+
Sbjct: 183 RFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALRPVFR 242
Query: 243 KDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAI 302
+ G VTAG++S + DGA AV++ S+ K+H L PLAR+ +V GV P IMGIGP PA
Sbjct: 243 EGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPVPAT 302
Query: 303 KNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXX--XGGAIALGHPLGASG 360
+ L+ AGL +D+ L+E+NEAF AQ LA GGAIALGHPLGASG
Sbjct: 303 RKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGASG 362
Query: 361 SRITAHLVHELR 372
+RI LVHE+R
Sbjct: 363 ARILTTLVHEMR 374
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 214/368 (58%), Gaps = 3/368 (0%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+L GSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRK 298
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
L+ AG + D+DLVE EAF AQ A GGAIA+GHP+GASG+RI
Sbjct: 299 ALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARIL 358
Query: 365 AHLVHELR 372
L+ E++
Sbjct: 359 NTLLFEMK 366
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 207/370 (55%), Gaps = 9/370 (2%)
Query: 6 KGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTS 65
K + IV+A RTP G++ G + +T+L ++A + A+E+ I E V +GNVL
Sbjct: 8 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 66 SDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMS 125
+ R L G+P+ P IN++C SG ++++ +Q+++ G +++ GG+++MS
Sbjct: 68 GQA--PTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMS 125
Query: 126 QAPHAVRNIRFGVPLGGQMELEDTLWT-GLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
P+ + R P GG ++LED + GLTD Y K+ M AE A K I R++ D +
Sbjct: 126 NVPYVMN--RGSTPYGG-VKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAY 182
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKP-VSVDADEHPKPQTTLETLAKLPPVFKK 243
A+ S T K A +AG F +E+ PV VT+K +P V V DE K + + KL VF+K
Sbjct: 183 AINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYK-RVDFSKVPKLKTVFQK 241
Query: 244 D-GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAI 302
+ G VTA +AS + DGA A+++ + A K N+TPLAR+V ++ V+P I P A
Sbjct: 242 ENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAA 301
Query: 303 KNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSR 362
+LK GL DI + E+NEAF LA GGA++LGHP+G SG+R
Sbjct: 302 SMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGAR 361
Query: 363 ITAHLVHELR 372
I HL H L+
Sbjct: 362 IVGHLTHALK 371
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 224 bits (570), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 198/381 (51%), Gaps = 37/381 (9%)
Query: 8 IFIVAAKRTPF-GTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSS 66
+ IVAA RTP + G F T L +A +E+ +NP V +V+G VLA S
Sbjct: 32 VVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQ 91
Query: 67 DSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
+ R + + G P +NR C SG Q+V + A I AG I + G+++M+
Sbjct: 92 RASEC-RMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTT 150
Query: 127 APHAVRNIRFGVPLGGQMELEDTLWTGLTD---------TYCKLPMALTAEKLADKFGIT 177
P A W G + C LPM +T+E +A +FG++
Sbjct: 151 NPMA--------------------WEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVS 190
Query: 178 RDKVDEFALRSQTLYKKAQDAGVFKSEIAPVEVTI------KRKPVSVDADEHPKPQTTL 231
R + D+ A+ S A AG FK EI PV+ + KP++V D+ +P TTL
Sbjct: 191 RQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTL 250
Query: 232 ETLAKLPPVFKKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDP 291
+L KL PVFKKDG TAG++S + DGAGAV++ + L L ++ VGVDP
Sbjct: 251 ASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDP 310
Query: 292 SIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIA 351
+IMGIGP+ AI +K AGL L+DIDL EINEAF +Q + C GGA+A
Sbjct: 311 AIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMA 370
Query: 352 LGHPLGASGSRITAHLVHELR 372
+GHPLGA+G+R A L+HE++
Sbjct: 371 IGHPLGATGARCVATLLHEMK 391
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 198/381 (51%), Gaps = 37/381 (9%)
Query: 8 IFIVAAKRTPF-GTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSS 66
+ IVAA RTP + G F T L +A +E+ +NP V +V+G VLA S
Sbjct: 15 VVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQ 74
Query: 67 DSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
+ R + + G P +NR C SG Q+V + A I AG I + G+++M+
Sbjct: 75 RASEC-RMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTT 133
Query: 127 APHAVRNIRFGVPLGGQMELEDTLWTGLTD---------TYCKLPMALTAEKLADKFGIT 177
P A W G + C LPM +T+E +A +FG++
Sbjct: 134 NPMA--------------------WEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVS 173
Query: 178 RDKVDEFALRSQTLYKKAQDAGVFKSEIAPVEVTI------KRKPVSVDADEHPKPQTTL 231
R + D+ A+ S A AG FK EI PV+ + KP++V D+ +P TTL
Sbjct: 174 RQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTL 233
Query: 232 ETLAKLPPVFKKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDP 291
+L KL PVFKKDG TAG++S + DGAGAV++ + L L ++ VGVDP
Sbjct: 234 ASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDP 293
Query: 292 SIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIA 351
+IMGIGP+ AI +K AGL L+DIDL EINEAF +Q + C GGA+A
Sbjct: 294 AIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMA 353
Query: 352 LGHPLGASGSRITAHLVHELR 372
+GHPLGA+G+R A L+HE++
Sbjct: 354 IGHPLGATGARCVATLLHEMK 374
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 197/371 (53%), Gaps = 19/371 (5%)
Query: 8 IFIVAAKRTPFGTYG-GKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSS 66
+ +V +RT G G F T+ +L + A L++ + PE + + +GNVL +
Sbjct: 32 VVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAG 91
Query: 67 DSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
+ R IP P +NR C SG Q+V + A I G I + GV++MS
Sbjct: 92 --AIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSL 149
Query: 127 APHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFAL 186
A G + L C +PM +T+E +A++FGI+R+K D FAL
Sbjct: 150 ADR-----------GNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFAL 198
Query: 187 RSQTLYKKAQDAGVFKSEIAPVEVTIK-----RKPVSVDADEHPKPQTTLETLAKLPPVF 241
SQ +AQ G F++EI PV T+ ++ ++V DE +P TT+E LAKL P F
Sbjct: 199 ASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAF 258
Query: 242 KKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPA 301
KKDG TAG++S + DGA A+++A + + L L L Y+VVGV P IMGIGP+ A
Sbjct: 259 KKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYA 318
Query: 302 IKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGS 361
I L+ AGL ++D+D+ EINEAF +Q C GGA+ALGHPLG +G+
Sbjct: 319 IPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGA 378
Query: 362 RITAHLVHELR 372
R L++EL+
Sbjct: 379 RQVITLLNELK 389
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 206/370 (55%), Gaps = 9/370 (2%)
Query: 6 KGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTS 65
K + IV+A RTP G++ G + +T+L ++A + A+E+ I E V +GNVL
Sbjct: 8 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 66 SDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMS 125
+ R L G+P+ P IN++ SG ++++ +Q+++ G +++ GG+++MS
Sbjct: 68 GQA--PTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMS 125
Query: 126 QAPHAVRNIRFGVPLGGQMELEDTLWT-GLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
P+ + R P GG ++LED + GLTD Y K+ M AE A K I R++ D +
Sbjct: 126 NVPYVMN--RGSTPYGG-VKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAY 182
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKP-VSVDADEHPKPQTTLETLAKLPPVFKK 243
A+ S T K A +AG F +E+ PV VT+K +P V V DE K + + KL VF+K
Sbjct: 183 AINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYK-RVDFSKVPKLKTVFQK 241
Query: 244 D-GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAI 302
+ G VTA +AS + DGA A+++ + A K N+TPLAR+V ++ V+P I P A
Sbjct: 242 ENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAA 301
Query: 303 KNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSR 362
+LK GL DI + E+NEAF LA GGA++LGHP+G SG+R
Sbjct: 302 SMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGAR 361
Query: 363 ITAHLVHELR 372
I HL H L+
Sbjct: 362 IVGHLTHALK 371
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 195/372 (52%), Gaps = 19/372 (5%)
Query: 8 IFIVAAKRTPF-GTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSS 66
+ IVAA R+P G T + KA +E+ INP V +V+G+VL S
Sbjct: 35 VVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIVVGSVLGAGSQ 94
Query: 67 DSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
+ R + + G P P +NR C SG Q+V + A I AG I + G+++M+
Sbjct: 95 RASEC-RMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTA 153
Query: 127 APHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFAL 186
P A + + T C LPM +T+E +A KF ITR + D+ A+
Sbjct: 154 NPMAWEG-----------SVNPKVKTMAQAQDCLLPMGITSENVAQKFSITRQEQDQAAV 202
Query: 187 RSQTLYKKAQDAGVFKSEIAPVEVTI------KRKPVSVDADEHPKPQTTLETLAKLPPV 240
S A AG FK EI P++ I KPV++ D+ +P T+L LAKL PV
Sbjct: 203 GSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLKPV 262
Query: 241 FKKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSP 300
F+KDG TAG++S + DGAGAV++ + L L ++ VGV PSIMGIGP+
Sbjct: 263 FRKDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRTFAAVGVPPSIMGIGPAV 322
Query: 301 AIKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASG 360
AI +K AGL ++DIDL EINEAF +Q + C GGA+A+GHPLGA+G
Sbjct: 323 AIPAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKINVNGGAMAIGHPLGATG 382
Query: 361 SRITAHLVHELR 372
+R A L+HE++
Sbjct: 383 ARCVATLLHEMK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 205/368 (55%), Gaps = 9/368 (2%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
+ IV+A RTP G++ G + +T+L ++A + A+E+ I E V +GNVL
Sbjct: 21 VVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQ 80
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
+ R L G+P+ P IN++ SG ++++ +Q+++ G +++ GG+++MS
Sbjct: 81 A--PTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSNV 138
Query: 128 PHAVRNIRFGVPLGGQMELEDTLWT-GLTDTYCKLPMALTAEKLADKFGITRDKVDEFAL 186
P+ + R P GG ++LED + GLTD Y K+ M AE A K I R++ D +A+
Sbjct: 139 PYVMN--RGSTPYGG-VKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAI 195
Query: 187 RSQTLYKKAQDAGVFKSEIAPVEVTIKRKP-VSVDADEHPKPQTTLETLAKLPPVFKKD- 244
S T K A +AG F +E+ PV VT+K +P V V DE K + + KL VF+K+
Sbjct: 196 NSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYK-RVDFSKVPKLKTVFQKEN 254
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKN 304
G VTA +AS + DGA A+++ + A K N+TPLAR+V ++ V+P I P A
Sbjct: 255 GTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASM 314
Query: 305 LLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGSRIT 364
+LK GL DI + E+NEAF LA GGA++LGHP+G SG+RI
Sbjct: 315 VLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIV 374
Query: 365 AHLVHELR 372
HL H L+
Sbjct: 375 GHLTHALK 382
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 191/374 (51%), Gaps = 21/374 (5%)
Query: 6 KGIFIVAAKRTPFG-TYGGKFTKTSSTQLQTVAAKAALEEG-KINPELVDSVVIGNVLAN 63
+ + IV RTP G + GG T + + LE K++P V+ V+ G V
Sbjct: 5 RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCV-NQ 63
Query: 64 TSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDN 123
T + R SL IP A ++RLCGS ++ AQ I+ G+ + + GGV++
Sbjct: 64 TLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEH 123
Query: 124 MSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDE 183
M ++ GV M L +G+ M LTAE L GI+R++ D
Sbjct: 124 MGHV-----SMMHGVDPNPHMSLYAAKASGM--------MGLTAEMLGKMHGISREQQDA 170
Query: 184 FALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSV-DADEHPKPQTTLETLAKLPPVFK 242
FA+RS L KA G FK EI P++ + + + D DE +P TTLE+LA L P F
Sbjct: 171 FAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFN 230
Query: 243 -KDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPA 301
K G VTAG++S I DGA +I+ S K L PLA + +V GVDP+IMG GP PA
Sbjct: 231 PKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPA 290
Query: 302 IKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXX---XXXXXXXXXGGAIALGHPLGA 358
+ LK AGL + DID +E+NEAF AQ L GGAIALGHP G
Sbjct: 291 TQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGC 350
Query: 359 SGSRITAHLVHELR 372
SG+RI+ L++ ++
Sbjct: 351 SGARISGTLLNVMK 364
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 189/371 (50%), Gaps = 19/371 (5%)
Query: 8 IFIVAAKRTPFGT-YGGKFTKTSSTQLQTVAAKAAL----EEGKINPELVDSVVIGNVLA 62
+ IVAA R+ G + G F ++ L + E + + L++ V GNVL
Sbjct: 12 VVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLN 71
Query: 63 NTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVD 122
+ + + R L GIP P + +NR C SG +V + A I G I L GV+
Sbjct: 72 VGAGATEH--RAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVE 129
Query: 123 NMSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVD 182
+M+ + +N+ PLG M + L C +PM +T E +A F I+R D
Sbjct: 130 SMT---NNYKNVN---PLG--MISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQD 181
Query: 183 EFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFK 242
EFA S KA++ G+F+ EI P+++ +DE P+P T E+L+ + P F
Sbjct: 182 EFAANSYQKAYKAKNEGLFEDEILPIKLP---DGSICQSDEGPRPNVTAESLSSIRPAFI 238
Query: 243 KD-GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPA 301
KD G TAG+AS + DG V++A + NL L R + + VGV P IMG+GP+ A
Sbjct: 239 KDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYA 298
Query: 302 IKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGS 361
I +L+ GL + DID+ EINEAF AQ L C GGAIALGHPLG +G+
Sbjct: 299 IPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGA 358
Query: 362 RITAHLVHELR 372
R A ++ EL+
Sbjct: 359 RQVATILRELK 369
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 189/371 (50%), Gaps = 19/371 (5%)
Query: 8 IFIVAAKRTPFGT-YGGKFTKTSSTQLQTVAAKAAL----EEGKINPELVDSVVIGNVLA 62
+ IVAA R+ G + G F ++ L + E + + L++ V GNVL
Sbjct: 9 VVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLN 68
Query: 63 NTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVD 122
+ + + R L GIP P + +NR C SG +V + A I G I L GV+
Sbjct: 69 VGAGATEH--RAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVE 126
Query: 123 NMSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVD 182
+M+ + +N+ PLG M + L C +PM +T E +A F I+R D
Sbjct: 127 SMT---NNYKNVN---PLG--MISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQD 178
Query: 183 EFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFK 242
EFA S KA++ G+F+ EI P+++ +DE P+P T E+L+ + P F
Sbjct: 179 EFAANSYQKAYKAKNEGLFEDEILPIKLP---DGSICQSDEGPRPNVTAESLSSIRPAFI 235
Query: 243 KD-GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPA 301
KD G TAG+AS + DG V++A + NL L R + + VGV P IMG+GP+ A
Sbjct: 236 KDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYA 295
Query: 302 IKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXXXXXXXXXXXXXGGAIALGHPLGASGS 361
I +L+ GL + DID+ EINEAF AQ L C GGAIALGHPLG +G+
Sbjct: 296 IPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGA 355
Query: 362 RITAHLVHELR 372
R A ++ EL+
Sbjct: 356 RQVATILRELK 366
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 192/378 (50%), Gaps = 39/378 (10%)
Query: 8 IFIVAAKRTPFG-TYGGKFTKTSSTQLQTVAAKAALEEGKINPEL----VDSVVIGNVLA 62
+ IV A RTP G + GG F + L ++ L NP L +D + G V
Sbjct: 4 VVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLAR---NPSLTAATLDDIYWGCV-Q 59
Query: 63 NTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVD 122
T + R+ +L IP PA+ +NRLCGS Q++ + A+ I GD+Q+ L GGV+
Sbjct: 60 QTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVE 119
Query: 123 NMSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLP--MALTAEKLADKFGITRDK 180
+ P + GV GL+ K LTAE L+ GI+R+
Sbjct: 120 HXGHVPXS-----HGV----------DFHPGLSRNVAKAAGXXGLTAEXLSRLHGISREX 164
Query: 181 VDEFALRSQTLYKKAQDAGVFKSEIAPV-----EVTIKRKPVSVDADEHPKPQTTLETLA 235
D+FA RS A +G FK+EI P + +K+ + DE +P+TT+E L+
Sbjct: 165 QDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQ----FNYDEVIRPETTVEALS 220
Query: 236 KLPPVFKK-DGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIM 294
L P F G VTAG++S + DGA A ++ SE+ + L P AR+ +VVG DPSI
Sbjct: 221 TLRPAFDPVSGTVTAGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIX 280
Query: 295 GIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACXXX---XXXXXXXXXXXGGAIA 351
G GP PA K LK AGL +DID+ E NEAF AQ L C GGAIA
Sbjct: 281 GYGPVPASKLALKKAGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIA 340
Query: 352 LGHPLGASGSRITAHLVH 369
LGHPLG SG+RI+ L++
Sbjct: 341 LGHPLGCSGARISTTLIN 358
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/398 (33%), Positives = 194/398 (48%), Gaps = 50/398 (12%)
Query: 3 AITKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAAL--EEGKINPELVDSVV---I 57
++++ FI A RTP G K S T+++ + L E + P+L ++++ I
Sbjct: 4 SMSEEAFIYEAIRTPRG----KQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMI 59
Query: 58 GNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVL 117
V++ + R L G+P + +NR C SG ++V AQ + +G +VL
Sbjct: 60 LGVVSPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVL 119
Query: 118 TGGVDNMSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKL---PMALTAEKLADKF 174
GGV++MS+ P M + W +T ++ P + A+ +A
Sbjct: 120 AGGVESMSRVP---------------MGSDGGAWATDPETNYRIGFVPQGIGADLIATLE 164
Query: 175 GITRDKVDEFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETL 234
G +R+ VD +ALRSQ A G F + PV + V +D DEH +P TT+E L
Sbjct: 165 GFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVR--DQNGLVILDHDEHMRPDTTMEGL 222
Query: 235 AKLPPVF---------------------KKDGVVTAGSASGICDGAGAVIIASEAAVKSH 273
AKL F K + V T G++SGI DGA V++ SE A KS
Sbjct: 223 AKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQ 282
Query: 274 NLTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACX 333
LTP AR+V + G DP IM GP+PA + +L AGL ++DIDL E+NEAF + L
Sbjct: 283 GLTPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQ 342
Query: 334 XXXXXXXXXXXXXGGAIALGHPLGASGSRITAHLVHEL 371
GGAIA+GHPLGA+G+ IT +V EL
Sbjct: 343 KDLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDEL 380
>pdb|2UUL|H Chain H, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 89 GINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHA--------VRNIRFGVPL 140
+NR+ + V N A+ + A Q++ GG + S A +R + + V
Sbjct: 40 AVNRITANASTVVSNAARALFAEQPQLIAPGGNADTSNRMAACLRDMEIILRYVTYAVFA 99
Query: 141 GGQMELEDTLWTGLTDTYCKL 161
G LED GL +TY L
Sbjct: 100 GDASALEDRCLNGLRETYSAL 120
>pdb|1GH0|B Chain B, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|D Chain D, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|F Chain F, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|H Chain H, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|J Chain J, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|L Chain L, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|N Chain N, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|P Chain P, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|R Chain R, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|T Chain T, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|V Chain V, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|X Chain X, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
Length = 172
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 90 INRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHA--------VRNIRFGVPLG 141
+NR+ + V N A+++ A Q++ GG S+ A +R + + V G
Sbjct: 41 VNRITSNASTIVSNAARSLFAEQPQLIAPGGXAYTSRRMAACLRDMEIILRYVTYAVFAG 100
Query: 142 GQMELEDTLWTGLTDTYCKL 161
LED GL +TY L
Sbjct: 101 DASVLEDRCLNGLRETYLAL 120
>pdb|1HA7|B Chain B, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|D Chain D, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|F Chain F, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|H Chain H, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|J Chain J, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|L Chain L, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|N Chain N, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|P Chain P, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|R Chain R, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|T Chain T, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|V Chain V, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|X Chain X, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
Length = 172
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 89 GINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHA--------VRNIRFGVPL 140
+NR+ + V N A+++ A Q++ GG S+ A +R + + V
Sbjct: 40 AVNRITSNASTIVSNAARSLFAEQPQLIAPGGXAYTSRRMAACLRDMEIILRYVTYAVFA 99
Query: 141 GGQMELEDTLWTGLTDTYCKL 161
G LED GL +TY L
Sbjct: 100 GDASVLEDRCLNGLRETYLAL 120
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 54/149 (36%), Gaps = 26/149 (17%)
Query: 224 HPKPQTTLETLAKLPPVFKKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVG 283
+P P+T K +DG + I +GAG VI+ K+ A +VG
Sbjct: 212 NPDPETACRPFDK-----DRDGFI-------IGEGAGIVILEEYEHAKARGAKIYAEIVG 259
Query: 284 YSVVG-----VDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVE-------INEAFGAQTLA 331
Y G P+ G G + A K + AGL + +D + N+ + +T A
Sbjct: 260 YGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVDYINAHGTSTPYNDEY--ETQA 317
Query: 332 CXXXXXXXXXXXXXXGGAIALGHPLGASG 360
GH LGASG
Sbjct: 318 IKTVFGEHAKKLAISSTKSXTGHTLGASG 346
>pdb|1CPC|B Chain B, Isolation, Crystallization, Crystal Structure Analysis And
Refinement Of Constitutive C-Phycocyanin From The
Chromatically Adapting Cyanobacterium Fremyella
Diplosiphon At 1.66 Angstroms Resolution
pdb|1CPC|L Chain L, Isolation, Crystallization, Crystal Structure Analysis And
Refinement Of Constitutive C-Phycocyanin From The
Chromatically Adapting Cyanobacterium Fremyella
Diplosiphon At 1.66 Angstroms Resolution
Length = 172
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 90 INRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHA--------VRNIRFGVPLG 141
+NR+ G+ V N A+++ A Q++ GG S+ A +R + + + G
Sbjct: 41 VNRITGNSSTIVANAARSLFAEQPQLIAPGGNAYTSRRMAACLRDMEIILRYVTYAIFAG 100
Query: 142 GQMELEDTLWTGLTDTYCKL-----PMALTAEKL--------ADKFGITRDKVDEFALRS 188
L+D GL +TY L +A+ +K+ D GITR
Sbjct: 101 DASVLDDRCLNGLKETYLALGTPGSSVAVGVQKMKDAALAIAGDTNGITRGDCASLMAEV 160
Query: 189 QTLYKKAQDA 198
+ + KA A
Sbjct: 161 ASYFDKAASA 170
>pdb|2UUN|B Chain B, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|F Chain F, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|H Chain H, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|J Chain J, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|L Chain L, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|N Chain N, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|P Chain P, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|R Chain R, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|T Chain T, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|V Chain V, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|X Chain X, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 89 GINRLCGSGFQSVVNGAQNILAGDSQIVLTGG----VDNMSQAPHAV----RNIRFGVPL 140
+NR+ + V N A+ + A Q++ GG D M+ + R + + V
Sbjct: 40 AVNRITANASTVVSNAARALFAEQPQLIAPGGNAYASDRMAACLRDMEIILRYVTYAVFA 99
Query: 141 GGQMELEDTLWTGLTDTYCKL 161
G LED GL +TY L
Sbjct: 100 GDASALEDRCLNGLRETYSAL 120
>pdb|2UUN|D Chain D, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 90 INRLCGSGFQSVVNGAQNILAGDSQIVLTGG----VDNMSQAPH----AVRNIRFGVPLG 141
+NR+ + V N A+ + A Q++ GG D M+ +R + + V G
Sbjct: 41 VNRITANASTVVSNAARALFAEQPQLIAPGGNAYASDRMAACLRDMEIILRYVTYAVFAG 100
Query: 142 GQMELEDTLWTGLTDTYCKL 161
LED GL +TY L
Sbjct: 101 DASALEDRCLNGLRETYSAL 120
>pdb|2UUL|B Chain B, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|F Chain F, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|J Chain J, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|L Chain L, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|N Chain N, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|P Chain P, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|R Chain R, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|T Chain T, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|V Chain V, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|X Chain X, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 89 GINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHA--------VRNIRFGVPL 140
+NR+ + V N A+ + A Q++ GG S A +R + + V
Sbjct: 40 AVNRITANASTVVSNAARALFAEQPQLIAPGGNAYTSNRMAACLRDMEIILRYVTYAVFA 99
Query: 141 GGQMELEDTLWTGLTDTYCKL 161
G LED GL +TY L
Sbjct: 100 GDASALEDRCLNGLRETYSAL 120
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 259 AGA-VIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGLG 312
AGA ++I +E K+ PLARL+G + V P+ G+ A+ L++AGL
Sbjct: 242 AGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLS 301
Query: 313 LNDIDLV 319
DID V
Sbjct: 302 PADIDHV 308
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 259 AGA-VIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGLG 312
AGA ++I +E K+ PLARL+G + V P+ G+ A+ L++AGL
Sbjct: 242 AGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLS 301
Query: 313 LNDIDLV 319
DID V
Sbjct: 302 PADIDHV 308
>pdb|2UUL|D Chain D, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 90 INRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHA--------VRNIRFGVPLG 141
+NR+ + V N A+++ A Q++ GG S A +R + + V G
Sbjct: 41 VNRITSNASTVVSNAARSLFAEQPQLIAPGGNAYTSNRMAACLRDMEIILRYVTYAVFAG 100
Query: 142 GQMELEDTLWTGLTDTYCKL 161
LED GL +TY L
Sbjct: 101 DASVLEDRCLNGLRETYSAL 120
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 46 KINPELVDSVVIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGA 105
KI+P V S ++ N++A H+++ G+ P++ I C SG ++ + A
Sbjct: 128 KISPFFVPSTIV-NMVAG----------HLTIMYGL--RGPSISIATACTSGVHNIGHAA 174
Query: 106 QNILAGDSQIVLTGGVDNMS 125
+ I GD+ +++ GG + S
Sbjct: 175 RIIAYGDADVMVAGGAEKAS 194
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 46 KINPELVDSVVIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGA 105
KI+P V S ++ N++A H+++ G+ P++ I C SG ++ + A
Sbjct: 143 KISPFFVPSTIV-NMVAG----------HLTIMYGL--RGPSISIATACTSGVHNIGHAA 189
Query: 106 QNILAGDSQIVLTGGVDNMS 125
+ I GD+ +++ GG + S
Sbjct: 190 RIIAYGDADVMVAGGAEKAS 209
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 46 KINPELVDSVVIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGA 105
KI+P V S ++ N++A H+++ G+ P++ I C SG ++ + A
Sbjct: 143 KISPFFVPSTIV-NMVAG----------HLTIMYGL--RGPSISIATACTSGVHNIGHAA 189
Query: 106 QNILAGDSQIVLTGGVDNMS 125
+ I GD+ +++ GG + S
Sbjct: 190 RIIAYGDADVMVAGGAEKAS 209
>pdb|1JOF|A Chain A, Neurospora Crassa 3-Carboxy-Cis,Cis-Mucoante Lactonizing
Enzyme
pdb|1JOF|B Chain B, Neurospora Crassa 3-Carboxy-Cis,Cis-Mucoante Lactonizing
Enzyme
pdb|1JOF|C Chain C, Neurospora Crassa 3-Carboxy-Cis,Cis-Mucoante Lactonizing
Enzyme
pdb|1JOF|D Chain D, Neurospora Crassa 3-Carboxy-Cis,Cis-Mucoante Lactonizing
Enzyme
pdb|1JOF|E Chain E, Neurospora Crassa 3-Carboxy-Cis,Cis-Mucoante Lactonizing
Enzyme
pdb|1JOF|F Chain F, Neurospora Crassa 3-Carboxy-Cis,Cis-Mucoante Lactonizing
Enzyme
pdb|1JOF|G Chain G, Neurospora Crassa 3-Carboxy-Cis,Cis-Mucoante Lactonizing
Enzyme
pdb|1JOF|H Chain H, Neurospora Crassa 3-Carboxy-Cis,Cis-Mucoante Lactonizing
Enzyme
Length = 365
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSST-QLQTVAAKAALEEGKINPELVDSVVIGNVLAN 63
T+ IF++AAK+ P+ Y F K + + +V+ LE+ N E ++ I + +
Sbjct: 94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGXVFD 153
Query: 64 TSSDSIY 70
+ +Y
Sbjct: 154 PTETYLY 160
>pdb|2UUM|X Chain X, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 90 INRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHA--------VRNIRFGVPLG 141
+NR+ + V N A+++ A Q++ GG S A +R + + V G
Sbjct: 41 VNRITSNASTIVSNAARSLFAEQPQLIAPGGNAYTSTRMAACLRDMEIILRYVTYAVFAG 100
Query: 142 GQMELEDTLWTGLTDTYCKL 161
LED GL +TY L
Sbjct: 101 DASVLEDRCLNGLRETYLAL 120
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 52 VDSVVIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAG 111
V + + + N ++ ++ L RH V PV C SG +++ Q I+ G
Sbjct: 153 VSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSA--------CASGAEAIARAWQQIVLG 204
Query: 112 DSQIVLTGGVDNMSQA 127
++ + GGV+ +A
Sbjct: 205 EADAAICGGVETRIEA 220
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+G ++I +E K+ LAR++G S+ V P G AI +++AGL
Sbjct: 258 EGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGL 317
Query: 312 GLNDIDLV 319
DID V
Sbjct: 318 APGDIDHV 325
>pdb|2UUM|B Chain B, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|D Chain D, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|F Chain F, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|H Chain H, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|J Chain J, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|L Chain L, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|N Chain N, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|P Chain P, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|R Chain R, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|T Chain T, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|V Chain V, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 90 INRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHA--------VRNIRFGVPLG 141
+NR+ + V N A+++ A Q++ GG S A +R + + V G
Sbjct: 41 VNRITSNASTIVSNAARSLFAEQPQLIAPGGNAYTSTRMAACLRDMEIILRYVTYAVFAG 100
Query: 142 GQMELEDTLWTGLTDTYCKL 161
LED GL +TY L
Sbjct: 101 DASVLEDRCLNGLRETYLAL 120
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 94 CGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
C + +SV G + IL+G ++I + GG D+ +
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYDDFQE 1337
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 94 CGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
C + +SV G + IL+G ++I + GG D+ +
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYDDFQE 1337
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 19/139 (13%)
Query: 235 AKLPPVFKKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----V 289
A P +DG V I +G+G +++ K A L GY + G
Sbjct: 235 ASRPFDCDRDGFV-------IGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHIT 287
Query: 290 DPSIMGIGPSPAIKNLLKIAGLGLNDIDLVE-------INEAFGAQTLACXXXXXXXXXX 342
P G G A+ L+ +GL N ID V I +A A+ +
Sbjct: 288 QPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGT 347
Query: 343 XXXXGGAIALGHPLGASGS 361
A GH LGA+G+
Sbjct: 348 LAFSSTKGATGHLLGAAGA 366
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 94 CGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
C + +SV G + IL+G ++I + GG D+ +
Sbjct: 1106 CATSVESVDIGVETILSGKARICIVGGYDDFQE 1138
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 86 PALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHAVRNIRFGV 138
P++ ++ C S ++ N Q I +G + GG++ + + +V+ +R G+
Sbjct: 155 PSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGM 207
>pdb|4EGV|A Chain A, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|B Chain B, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|C Chain C, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|D Chain D, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|E Chain E, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|F Chain F, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
Length = 520
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 29/170 (17%)
Query: 15 RTPFGTYGGKFTK---------TSSTQLQTVAAKAALEEGKINPELV----DSV------ 55
RTP G+FT+ SS +L T AAKAAL + + + V D+V
Sbjct: 18 RTPVIVGVGQFTERIDLDGYRGXSSVELATEAAKAALHDCGADADTVARAIDTVAGTRQF 77
Query: 56 -VIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCG--SGFQSVVNGAQNILAGD 112
+ G A S Y PR V+ ++G PA + + G S I AG+
Sbjct: 78 EISGPASAPLGVSSNY-PRSVARNIGA---DPAHAVLEVIGGQSPQHLATEFGGKIAAGE 133
Query: 113 SQIVLTGGVDNMSQAPH---AVRNIRFGVPLGGQMELEDTLWTGLTDTYC 159
+ +VL G +N S H A + GQ+E + G+ D Y
Sbjct: 134 NDVVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGIFDEYT 183
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 31 TQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPRHVSLHV-GIPVEKPALG 89
T + T AAK AL E ++PE +D +++ + S L G+ A
Sbjct: 51 TYMATQAAKEALREANLSPEELDLIILATLTPQKRFPSTACLVQAQLKAKGV----YAFD 106
Query: 90 INRLCGSGFQSVVNGAQNIL-AGDSQIVLTGGVDNMSQA 127
I+ C SGF ++ A + + +G ++ VL G + +S+A
Sbjct: 107 ISAAC-SGFIYALDIADSFIKSGKAKNVLVIGAEKLSEA 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,122,479
Number of Sequences: 62578
Number of extensions: 398244
Number of successful extensions: 1465
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1310
Number of HSP's gapped (non-prelim): 83
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)