RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16700
(372 letters)
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 552 bits (1426), Expect = 0.0
Identities = 160/367 (43%), Positives = 224/367 (61%), Gaps = 3/367 (0%)
Query: 6 KGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTS 65
+ I AA R+P GT+GG + +L + A++ G + P VD V++G+ +
Sbjct: 5 HNVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCI--QR 62
Query: 66 SDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMS 125
+D R +L G P I R C SG Q++++ A I G S++V+ GGV+ MS
Sbjct: 63 TDEANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMS 122
Query: 126 QAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFA 185
+P+A++ R+G L E+ DT+W L D + M TAE L +++ ITR++ DE A
Sbjct: 123 SSPYALKQHRWGQRLQ-HGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVA 181
Query: 186 LRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKDG 245
LRS TL KA ++G F +I P+ + +RK V DEHP+ T E LA L P F+KDG
Sbjct: 182 LRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAFRKDG 241
Query: 246 VVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKNL 305
VTAG+ASG+ DG+ +++ SE K L PLAR+VGYSV GVDP IMGIGP+PAI+
Sbjct: 242 SVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAIRKG 301
Query: 306 LKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASGSRITA 365
L+ L D DL+EINEAF AQ LA K+LDLD K+N+NG + LGHP+G +G+RIT
Sbjct: 302 LEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGARITV 361
Query: 366 HLVHELR 372
L+HEL+
Sbjct: 362 SLIHELK 368
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 514 bits (1327), Expect = 0.0
Identities = 166/366 (45%), Positives = 240/366 (65%), Gaps = 4/366 (1%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
+ I +A RT G++GG F S+ +L AAK A++ I P+++D ++G VL T+
Sbjct: 9 VVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVL--TAGL 66
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
+ R ++L GIPVEKPA+ IN +CGSG +SV +Q I GD+ I+L GG +NMS +
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 128 PHAVRNIRFGVPLGGQMELEDT-LWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFAL 186
P+ V + R+G +G D+ + GL+D + M +TAE +A+++ ITR++ DE AL
Sbjct: 127 PYLVPSARYGARMG-DAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELAL 185
Query: 187 RSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKDGV 246
SQ +KAQ G F EI PV + ++ VD DE+ KP TT+E LAKL P FKKDG
Sbjct: 186 ASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKKDGT 245
Query: 247 VTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKNLL 306
VTAG+ASGI DGA +++ ++ + + PLA +V Y GVDP IMG GP PA K L
Sbjct: 246 VTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKAL 305
Query: 307 KIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASGSRITAH 366
+ A + + DIDLVE NEAF AQ++A ++DL++D+NK+N+NGGAIA+GHP+G SG+RI
Sbjct: 306 EAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTT 365
Query: 367 LVHELR 372
L++E++
Sbjct: 366 LLYEMK 371
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 500 bits (1291), Expect = e-178
Identities = 170/367 (46%), Positives = 238/367 (64%), Gaps = 5/367 (1%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
+ IV+A RTP G++GG F TS+ QL T+A K A+ +N +D V+IGNVL +
Sbjct: 7 VVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVL--QTGL 64
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
+ R ++++ GIP P+ +N+LCGSG +SV AQ+I +G++ +V+ GG +NMSQA
Sbjct: 65 GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQA 124
Query: 128 PHAVRNIRFGVPLGGQMELEDT-LWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFAL 186
P+ V RFG +G + + D+ L GL D + + M +TAE +A KF TR+ D+ AL
Sbjct: 125 PYIVPTARFGSKMG-NITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLAL 183
Query: 187 RSQTLYKKAQDAGVFKSEIAPVEVTIKRK-PVSVDADEHPKPQTTLETLAKLPPVFKKDG 245
SQ + A FK EI PV+V I+R ++D DE+PK T E L+KL P FKKDG
Sbjct: 184 ESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLKPAFKKDG 243
Query: 246 VVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKNL 305
VTAG+ASGI DGA +I+ S+ + PLA++ Y+ GV+P +MG GP PA +
Sbjct: 244 TVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRKA 303
Query: 306 LKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASGSRITA 365
LK AGL +NDIDL+E NEAF AQ LA +L +D +KLN+NGGAIALGHP+GASG+RI
Sbjct: 304 LKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGARILV 363
Query: 366 HLVHELR 372
L++E++
Sbjct: 364 TLIYEMQ 370
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 493 bits (1272), Expect = e-176
Identities = 156/369 (42%), Positives = 227/369 (61%), Gaps = 5/369 (1%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G VL
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL--P 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+LCGSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDT-LWTGLTDTYCKLPMALTAEKLADKFGITRDKVDE 183
S APH ++R GV +G ++ DT + GLTD + M TAE +A ++ ++RD+ D
Sbjct: 120 SMAPHCA-HLRGGVKMG-DFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDA 177
Query: 184 FALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKK 243
FA+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K
Sbjct: 178 FAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 244 DGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIK 303
+G VTAG+ASG+ DGA A ++ SEA + PL R+V ++ VGVDP +MG GP PA +
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 304 NLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASGSRI 363
L+ AG + D+DLVE NEAF AQ A KDL D + +N+NGGAIA+GHP+GASG+RI
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 364 TAHLVHELR 372
L+ E++
Sbjct: 358 LNTLLFEMK 366
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 485 bits (1250), Expect = e-172
Identities = 155/373 (41%), Positives = 215/373 (57%), Gaps = 10/373 (2%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
+IV A RTP G +GG L A ++ + E V+ V G D
Sbjct: 4 AWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCAN-QAGED 62
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
+ + R L G PVE +NRLCGSG ++V A+ I AG+ ++ + GV++MS+A
Sbjct: 63 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 122
Query: 128 PHAVRNIRFGVPLGGQMELEDTL--WT----GLTDTYCKLPMALTAEKLADKFGITRDKV 181
P+AV G P G + + DT W + Y M TAE LA+ +GI R++
Sbjct: 123 PYAVPKPERGFPTG-NLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQ 181
Query: 182 DEFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVF 241
D FAL S +A + G F+ E+ PV V ++ + V+ DE P+ T+LE LA L PVF
Sbjct: 182 DRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALRPVF 241
Query: 242 KKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPA 301
++ G VTAG++S + DGA AV++ S+ K+H L PLAR+ +V GV P IMGIGP PA
Sbjct: 242 REGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPVPA 301
Query: 302 IKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDL--DINKLNLNGGAIALGHPLGAS 359
+ L+ AGL +D+ L+E+NEAF AQ LA L++ L + +LN NGGAIALGHPLGAS
Sbjct: 302 TRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGAS 361
Query: 360 GSRITAHLVHELR 372
G+RI LVHE+R
Sbjct: 362 GARILTTLVHEMR 374
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 478 bits (1233), Expect = e-170
Identities = 162/380 (42%), Positives = 224/380 (58%), Gaps = 17/380 (4%)
Query: 1 MSAITKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNV 60
M+A + + IV+A RT G++ G L + K L+ + PE V V+ G+V
Sbjct: 1 MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV 60
Query: 61 LA-----NTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQI 115
LA N R S+ GIP PA +CGSG ++V Q+I GDS I
Sbjct: 61 LAAGCGQNPV-------RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSI 113
Query: 116 VLTGGVDNMSQAPHAVRNIRFGVPLGGQMELEDTLWT-GLTDTYCKLPMALTAEKLADKF 174
V+ GG++NMS+APH +R GV +G +M L D++ GLTD + M +TAE +A K+
Sbjct: 114 VVAGGMENMSKAPHLA-YLRTGVKIG-EMPLTDSILCDGLTDAFHNCHMGITAENVAKKW 171
Query: 175 GITRDKVDEFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETL 234
++R+ D+ A+ SQ + AQ AG F EI PV V+ ++ + V DE P+ + +E +
Sbjct: 172 QVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAM 231
Query: 235 AKLPPVFKKDG--VVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPS 292
+KL P F DG VT +ASGI DGA AV++ ++ LTPLAR+V +S VGV+PS
Sbjct: 232 SKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPS 291
Query: 293 IMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIAL 352
IMGIGP PAIK + AG L D+D+ EINEAF A + A +K+L L+ K+N+ GGAIAL
Sbjct: 292 IMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIAL 351
Query: 353 GHPLGASGSRITAHLVHELR 372
GHPLGASG RI L+H L
Sbjct: 352 GHPLGASGCRILVTLLHTLE 371
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 450 bits (1161), Expect = e-159
Identities = 134/378 (35%), Positives = 191/378 (50%), Gaps = 19/378 (5%)
Query: 1 MSAITKGIFIVAAKRTPFGT-YGGKFTKTSSTQLQTVAAKAALE----EGKINPELVDSV 55
+ + + IVAA R+ G + G F ++ L + + + L++ V
Sbjct: 5 LEKRPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEV 64
Query: 56 VIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQI 115
GNVL R L GIP P + +NR C SG +V + A I G I
Sbjct: 65 ACGNVL--NVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDI 122
Query: 116 VLTGGVDNMSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFG 175
L GV++M+ PLG E L C +PM +T E +A F
Sbjct: 123 GLALGVESMTNNYKN------VNPLGMISSEE--LQKNREAKKCLIPMGITNENVAANFK 174
Query: 176 ITRDKVDEFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLA 235
I+R DEFA S KA++ G+F+ EI P+++ +DE P+P T E+L+
Sbjct: 175 ISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKL---PDGSICQSDEGPRPNVTAESLS 231
Query: 236 KLPPVFKKD-GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIM 294
+ P F KD G TAG+AS + DG V++A + NL L R + + VGV P IM
Sbjct: 232 SIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIM 291
Query: 295 GIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGH 354
G+GP+ AI +L+ GL + DID+ EINEAF AQ L C+ L +D+NK+N GGAIALGH
Sbjct: 292 GVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGH 351
Query: 355 PLGASGSRITAHLVHELR 372
PLG +G+R A ++ EL+
Sbjct: 352 PLGCTGARQVATILRELK 369
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 449 bits (1157), Expect = e-158
Identities = 139/371 (37%), Positives = 203/371 (54%), Gaps = 19/371 (5%)
Query: 8 IFIVAAKRTPFGTYG-GKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSS 66
+ +V +RT G G F T+ +L + A L++ + PE + + +GNVL
Sbjct: 32 VVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVL--QPG 89
Query: 67 DSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
+ R IP P +NR C SG Q+V + A I G I + GV++MS
Sbjct: 90 AGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSL 149
Query: 127 APHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFAL 186
A + + + D L PM +T+E +A++FGI+R+K D FAL
Sbjct: 150 ADRGNPGNITSRLMEKE-KARDCLI----------PMGITSENVAERFGISREKQDTFAL 198
Query: 187 RSQTLYKKAQDAGVFKSEIAPVEVTI-----KRKPVSVDADEHPKPQTTLETLAKLPPVF 241
SQ +AQ G F++EI PV T+ ++ ++V DE +P TT+E LAKL P F
Sbjct: 199 ASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAF 258
Query: 242 KKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPA 301
KKDG TAG++S + DGA A+++A + + L L L Y+VVGV P IMGIGP+ A
Sbjct: 259 KKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYA 318
Query: 302 IKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
I L+ AGL ++D+D+ EINEAF +Q C++ L L K+N GGA+ALGHPLG +G+
Sbjct: 319 IPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGA 378
Query: 362 RITAHLVHELR 372
R L++EL+
Sbjct: 379 RQVITLLNELK 389
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 445 bits (1146), Expect = e-156
Identities = 144/370 (38%), Positives = 203/370 (54%), Gaps = 19/370 (5%)
Query: 10 IVAAKRTPFG-TYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDS 68
IVAA RTP + G F T L +A +E+ +NP V +V+G VLA S
Sbjct: 34 IVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLA-PGSQR 92
Query: 69 IYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAP 128
R + + G P +NR C SG Q+V + A I AG I + G+++M+ P
Sbjct: 93 ASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNP 152
Query: 129 HAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFALRS 188
+ + + C LPM +T+E +A +FG++R + D+ A+ S
Sbjct: 153 M-----------AWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 201
Query: 189 QTLYKKAQDAGVFKSEIAPVEVTI------KRKPVSVDADEHPKPQTTLETLAKLPPVFK 242
A AG FK EI PV+ + KP++V D+ +P TTL +L KL PVFK
Sbjct: 202 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 261
Query: 243 KDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAI 302
KDG TAG++S + DGAGAV++ + L L ++ VGVDP+IMGIGP+ AI
Sbjct: 262 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 321
Query: 303 KNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASGSR 362
+K AGL L+DIDL EINEAF +Q + C L LD K+N+NGGA+A+GHPLGA+G+R
Sbjct: 322 PAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGAR 381
Query: 363 ITAHLVHELR 372
A L+HE++
Sbjct: 382 CVATLLHEMK 391
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 437 bits (1127), Expect = e-154
Identities = 143/374 (38%), Positives = 192/374 (51%), Gaps = 21/374 (5%)
Query: 6 KGIFIVAAKRTPFGTY-GGKFTKTSSTQLQTVAAKAALE-EGKINPELVDSVVIGNVLAN 63
+ + IV RTP G GG T + + LE K++P V+ V+ G V
Sbjct: 5 RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVN-Q 63
Query: 64 TSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDN 123
T + R SL IP A ++RLCGS ++ AQ I+ G+ + + GGV++
Sbjct: 64 TLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEH 123
Query: 124 MSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDE 183
M ++ L M LTAE L GI+R++ D
Sbjct: 124 MGHVSMM-------------HGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDA 170
Query: 184 FALRSQTLYKKAQDAGVFKSEIAPVEVTIKR-KPVSVDADEHPKPQTTLETLAKLPPVFK 242
FA+RS L KA G FK EI P++ + D DE +P TTLE+LA L P F
Sbjct: 171 FAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFN 230
Query: 243 -KDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPA 301
K G VTAG++S I DGA +I+ S K L PLA + +V GVDP+IMG GP PA
Sbjct: 231 PKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPA 290
Query: 302 IKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDL---DLDINKLNLNGGAIALGHPLGA 358
+ LK AGL + DID +E+NEAF AQ L LKDL D K+NL+GGAIALGHP G
Sbjct: 291 TQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGC 350
Query: 359 SGSRITAHLVHELR 372
SG+RI+ L++ ++
Sbjct: 351 SGARISGTLLNVMK 364
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 431 bits (1111), Expect = e-151
Identities = 138/372 (37%), Positives = 214/372 (57%), Gaps = 17/372 (4%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLA----- 62
+ IV+A RTP G++ G + +T+L ++A + A+E+ I E V +GNVL
Sbjct: 10 VVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQ 69
Query: 63 NTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVD 122
+ R L G+P+ P IN++C SG ++++ +Q+++ G +++ GG++
Sbjct: 70 APT-------RQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGME 122
Query: 123 NMSQAPHAVRNIRFGVPLGGQMELEDTLWT-GLTDTYCKLPMALTAEKLADKFGITRDKV 181
+MS P+ + R P GG +LED + GLTD Y K+ M AE A K I R++
Sbjct: 123 SMSNVPYVMN--RGSTPYGGV-KLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQ 179
Query: 182 DEFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVF 241
D +A+ S T K A +AG F +E+ PV VT+K +P V ++ + + KL VF
Sbjct: 180 DAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVF 239
Query: 242 KKD-GVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSP 300
+K+ G VTA +AS + DGA A+++ + A K N+TPLAR+V ++ V+P I P
Sbjct: 240 QKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVY 299
Query: 301 AIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASG 360
A +LK GL DI + E+NEAF LA +K L++D K+N+NGGA++LGHP+G SG
Sbjct: 300 AASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSG 359
Query: 361 SRITAHLVHELR 372
+RI HL H L+
Sbjct: 360 ARIVGHLTHALK 371
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 427 bits (1100), Expect = e-150
Identities = 144/372 (38%), Positives = 198/372 (53%), Gaps = 21/372 (5%)
Query: 8 IFIVAAKRTPFGTY-GGKFTKTSSTQLQTVAAKAALEE-GKINPELVDSVVIGNVLANTS 65
+ IV A RTP G GG F + L ++ L + +D + G V T
Sbjct: 4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQ-QTL 62
Query: 66 SDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMS 125
+ R+ +L IP PA+ +NRLCGS Q++ + A+ I+ GD+Q+ L GGV++M
Sbjct: 63 EQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMG 122
Query: 126 QAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFA 185
P + F L + M LTAE L+ GI+R+ D+FA
Sbjct: 123 HVPM-SHGVDFHPGLSRNVAKAAG------------MMGLTAEMLSRLHGISREMQDQFA 169
Query: 186 LRSQTLYKKAQDAGVFKSEIAPVEVTIKR-KPVSVDADEHPKPQTTLETLAKLPPVFKK- 243
RS A +G FK+EI P + DE +P+TT+E L+ L P F
Sbjct: 170 ARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPV 229
Query: 244 DGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIK 303
G VTAG++S + DGA A+++ SE+ + L P AR+ +VVG DPSIMG GP PA K
Sbjct: 230 SGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASK 289
Query: 304 NLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLD---INKLNLNGGAIALGHPLGASG 360
LK AGL +DID+ E+NEAF AQ L C+KDL L K+NLNGGAIALGHPLG SG
Sbjct: 290 LALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSG 349
Query: 361 SRITAHLVHELR 372
+RI+ L++ +
Sbjct: 350 ARISTTLINLME 361
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 382 bits (983), Expect = e-132
Identities = 134/387 (34%), Positives = 187/387 (48%), Gaps = 38/387 (9%)
Query: 9 FIVAAKRTPFGTY-GGKFTKTSSTQLQTVAAKAALE-EGKINPELVDSVVIGNVLANTSS 66
FI A RTP G G T+ L ++ L+ +++G V +
Sbjct: 10 FIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVV-SPVGD 68
Query: 67 DSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQ 126
+ R L G+P + +NR C SG ++V AQ + +G +VL GGV++MS+
Sbjct: 69 QGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSR 128
Query: 127 APHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEFAL 186
P + +P + A+ +A G +R+ VD +AL
Sbjct: 129 VPMGSDGGAWATDPETNYR------------IGFVPQGIGADLIATLEGFSREDVDAYAL 176
Query: 187 RSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKDG- 245
RSQ A G F + PV + V +D DEH +P TT+E LAKL F G
Sbjct: 177 RSQQKAAAAWSGGYFAKSVVPVRD--QNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGE 234
Query: 246 --------------------VVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYS 285
V T G++SGI DGA V++ SE A KS LTP AR+V +
Sbjct: 235 MGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATA 294
Query: 286 VVGVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNL 345
G DP IM GP+PA + +L AGL ++DIDL E+NEAF + L KDL++ KLN+
Sbjct: 295 TSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNV 354
Query: 346 NGGAIALGHPLGASGSRITAHLVHELR 372
NGGAIA+GHPLGA+G+ IT +V EL
Sbjct: 355 NGGAIAMGHPLGATGAMITGTMVDELE 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 8e-09
Identities = 63/328 (19%), Positives = 101/328 (30%), Gaps = 112/328 (34%)
Query: 95 GSGFQSVVNG-----------AQNIL-AGDSQIVLTGG---VDNMSQAPHAVRNIRFGVP 139
GS Q G AQ++ D+ T G +D + P + I FG
Sbjct: 1625 GS--QEQ--GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT-IHFGGE 1679
Query: 140 LGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITR---DKVDEFALR--------- 187
G+ + + Y A+ E + D T +++E +
Sbjct: 1680 -KGK---------RIRENY----SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 188 -SQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKDGV 246
S T + Q A + E A E +K + L F
Sbjct: 1726 LSATQF--TQPA-LTLMEKAAFED-LKS-----------------KGLIPADATF----- 1759
Query: 247 VTAG------SASGICDGAGAVIIASEAAVK--------SHNLTP---LARLVGYSVVGV 289
AG +A + A ++ E+ V+ P L R Y ++ +
Sbjct: 1760 --AGHSLGEYAA--LASLADV--MSIESLVEVVFYRGMTMQVAVPRDELGRS-NYGMIAI 1812
Query: 290 DPSIMGIGPSP-AIKNLLKIAGLGLNDIDLVEI---NEAFGAQTLAC---LKDLDLDINK 342
+P + S A++ + + +G LVEI N Q L+ LD N
Sbjct: 1813 NPGRVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVE-NQQY-VAAGDLRALDTVTNV 1868
Query: 343 LNLNG-GAIALGHPLGASGS--RITAHL 367
LN I + L S S + HL
Sbjct: 1869 LNFIKLQKIDIIE-LQKSLSLEEVEGHL 1895
Score = 52.0 bits (124), Expect = 2e-07
Identities = 69/351 (19%), Positives = 101/351 (28%), Gaps = 131/351 (37%)
Query: 9 FIVAAKR---TPFGTYGGKF---TKTSSTQLQTVAAKAALEEGKINPELVDSVV------ 56
++V AK TP G+ K ++ Q + A+ E SV
Sbjct: 249 YVVTAKLLGFTP-----GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 57 --IGNVLANTSSDSIYLPRHV---SLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAG 111
IG V + + LP + SL V P L I+ L Q VN + L
Sbjct: 304 FFIG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 112 DSQI-----------VLTG-------------------GVDNMSQAPHAVRNIRFGV--- 138
Q+ V++G G+D S+ P + R ++F
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRFL 421
Query: 139 --------PLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGI----TRDKVDEFAL 186
L L D ++ A+ + I T D D L
Sbjct: 422 PVASPFHSHL-----LVPASDLINKDLVKN-NVSFNAKDIQ----IPVYDTFDGSD---L 468
Query: 187 RSQTLYKKAQDAGVFKSEIAPVEV-TIKRKPVSVDADEHPKPQTTLETLAKLPP----VF 241
R I+ V I R PV ET + F
Sbjct: 469 RV------------LSGSISERIVDCIIRLPV------K------WETTTQFKATHILDF 504
Query: 242 KKDGVVTAGSASGI-------CDGAGA-VIIASEAAVKSHNLTPLARLVGY 284
G G ASG+ DG G VI+A + ++ P G+
Sbjct: 505 ---G---PGGASGLGVLTHRNKDGTGVRVIVAG-----TLDINP-DDDYGF 543
Score = 31.9 bits (72), Expect = 0.43
Identities = 23/160 (14%), Positives = 38/160 (23%), Gaps = 82/160 (51%)
Query: 294 MGI---GPSPAIKNLLKIA------GLGLNDIDLVEINEA-----FGAQ----------- 328
MG+ S A +++ A G + +D+V N FG +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 329 ------------TLACLKDLDLDINKLNLNGG------------AIAL------------ 352
T K+++ A+ L
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 353 ----------GHPLG-----ASGSRI-----TAHLVHELR 372
GH LG AS + + +V R
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF-YR 1789
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 2e-07
Identities = 47/355 (13%), Positives = 94/355 (26%), Gaps = 117/355 (32%)
Query: 40 AALEEGKINPELVDSVVIG--NVLANTSSDSIYLPRHVS-------LHVGIPVEKPALGI 90
+ ++ + P ++ + I + L N + ++ +VS L + +PA +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 91 NRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHAVRNIRFGV---PLGGQMELE 147
+++G + G + + V + + F + L E
Sbjct: 154 ----------LIDG----VLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 148 DTL-------------WTGLTDTYCKLPMALTAEKLADKFGITR----------DKV--- 181
L WT +D + + + + + + + V
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 182 ---DEFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQT---TLETLA 235
+ F L + L + V A +S+ D H T L
Sbjct: 257 KAWNAFNLSCKILL-TTRFKQVTDFLSA-----ATTTHISL--DHHSMTLTPDEVKSLLL 308
Query: 236 K--------LPPVFKKDGVVTAGSASGICDGAGAVI--IASEAAVKSHNLTPLARLVGYS 285
K LP + + IA +++ LA +
Sbjct: 309 KYLDCRPQDLPRE--------------VLTTNPRRLSIIA--ESIRDG----LATWDNWK 348
Query: 286 VVGVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDI 340
V D L I LN ++ E + F L+ I
Sbjct: 349 HVNCD-------------KLTTIIESSLNVLEPAEYRKMF--DRLSVFPP-SAHI 387
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 38.1 bits (89), Expect = 0.003
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 32 QLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGIN 91
+L A ++AL + + E +D + G++L + + Y+ RH+ + P L +
Sbjct: 57 KLMEDAVQSALSKQNLKKEDIDIFLAGDLLNQNVTAN-YVARHLKI--------PFLCLF 107
Query: 92 RLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQAPHAVRNIRFGVPLGGQMELEDTLW 151
C + +S+ + I G ++ L S A R R+ GGQ T
Sbjct: 108 GACSTSMESIAISSALIDGGFAKRALAATS---SHNATAERQFRYPTEYGGQKPGTAT-S 163
Query: 152 T 152
T
Sbjct: 164 T 164
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 37.5 bits (88), Expect = 0.005
Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 34/125 (27%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+G ++I +E K+ LAR++G S+ V P G AI +++AGL
Sbjct: 258 EGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGL 317
Query: 312 GLNDI-------------DLVE---INEAFGAQTLACLKDLDLDINKLNLNGGAIALGHP 355
DI DL E IN A G N+ + ALGH
Sbjct: 318 APGDIDHVNAHATGTQVGDLAEGRAINNALGG-------------NRPAVYAPKSALGHS 364
Query: 356 LGASG 360
+GA G
Sbjct: 365 VGAVG 369
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 37.2 bits (86), Expect = 0.011
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 32/123 (26%)
Query: 31 TQLQTVAAKAALEEGKINP-----ELVDSVVIGNVLANTSS--DSIYLPRHVSLHVGIPV 83
T V+ A I + V +GN + ++ PV
Sbjct: 1013 TLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALR-GMFKDRFKDEPV 1071
Query: 84 EKP----------ALGINRL--------------CGSGFQSVVNGAQNILAGDSQIVLTG 119
+ + +N L C + +SV G + IL+G ++I + G
Sbjct: 1072 QNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVG 1131
Query: 120 GVD 122
G D
Sbjct: 1132 GYD 1134
Score = 34.9 bits (80), Expect = 0.054
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 295 GIGPSPAIKNLLKIAGLGLNDIDLV----------EINEAFGAQTLACLKDLDLD-INKL 343
++ L GL ++D+ + + NE+ + +K L N +
Sbjct: 1316 RDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEM--MKHLGRSEGNPV 1373
Query: 344 NLNGGAIALGHPLGASGS 361
GHP GA+G+
Sbjct: 1374 IGVFQKFLTGHPKGAAGA 1391
Score = 27.5 bits (61), Expect = 9.9
Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 11/121 (9%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-------VDPSIMGIGPSPAIKNLLKIA 309
GAG II + + + P + + + +K A
Sbjct: 1181 QGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYA 1240
Query: 310 GLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASGSRITAHLVH 369
LN AQ +++ ++ L L I R T + +
Sbjct: 1241 SPNLNMKYRKRQLVTREAQIKDWVEN---ELEALKLEAEEIPSEDQNEFLLER-TREIHN 1296
Query: 370 E 370
E
Sbjct: 1297 E 1297
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 34.1 bits (79), Expect = 0.077
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
DGAG +++ K A LVG+ + P G G + A+ N L+ AG+
Sbjct: 248 DGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGI 307
Query: 312 GLNDIDLVEINEAFG--------AQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
+ I +N A G A+ A +++ ++ GH LGA+G+
Sbjct: 308 EASQIGY--VN-AHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGA 362
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 33.8 bits (76), Expect = 0.087
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 255 ICDGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLKIAGLGLN 314
I G ++ NL L VG G D + P + + LG+
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260
Query: 315 DIDLV-EINEAF-GAQTLACLKDLDLDINKLNLNGGAIAL 352
D + + E F + L L+ +D+ L + GA L
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLT-DEGARLL 299
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 33.6 bits (78), Expect = 0.087
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+ ++I +E K+ PLARL+G + V P+ G+ A+ L++AGL
Sbjct: 241 EAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGL 300
Query: 312 GLNDID 317
DID
Sbjct: 301 SPADID 306
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 32.9 bits (76), Expect = 0.14
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
+++ L +A++ A+E I+P+ +D +++ TS+ P + +GI
Sbjct: 64 TTSDLAFIASQRAIEAADIDPQSIDLIIVA-----TSTPDFVFPSTACLLQNKLGIRNHG 118
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
A + +C SGF +V I +G + L G + S
Sbjct: 119 AAFDVQAVC-SGFAYAVATADSFIRSGQHRTALVIGAETFS 158
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 32.9 bits (76), Expect = 0.17
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+GAG VI+ K+ A +VGY G P+ G G + A+K + AGL
Sbjct: 233 EGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGL 292
Query: 312 GLNDIDLVEINEAFG--------AQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
+ +D IN A G +T A KL ++ GH LGASG
Sbjct: 293 TPDKVDY--IN-AHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSMTGHTLGASGG 347
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 32.5 bits (75), Expect = 0.19
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 28 TSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVE 84
TS+ L A + L + +D++ + + + + LP + + +P
Sbjct: 64 TSAGDLCRKAGEKLLAGLGWQADSIDAL----IFVSQTPNYR-LPATAFVLQAELDLPAS 118
Query: 85 KPALGINRLCGSGF-QSVVNGAQNILAGDSQIVLTGGVDNMS 125
AL IN C SG+ Q++ G I G ++ VL D +S
Sbjct: 119 CLALDINLGC-SGYPQALWLGMNLIQTGAAKRVLLAVGDTIS 159
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 32.5 bits (75), Expect = 0.20
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+GAG ++I S + ++ A +VGY G P+ G G S A++ + AG+
Sbjct: 257 EGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGI 316
Query: 312 GLNDIDLVEINEAFG--------AQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
D+ +N A G + A L ++ GH LGA+G
Sbjct: 317 EPKDVQY--LN-AHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGG 371
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 32.5 bits (75), Expect = 0.22
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+GAG +++ + K A LVG+ +P G G + A+ LK AG+
Sbjct: 231 EGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGI 290
Query: 312 GLNDIDLVEINEAFG--------AQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
+ IN A G A+ LA + +L ++ +GH LGA+G+
Sbjct: 291 APEQVGY--IN-AHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGA 345
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 32.5 bits (75), Expect = 0.23
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+G+G +I+ + + +VGY++ P G G + AI LK +GL
Sbjct: 237 EGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGL 296
Query: 312 GLNDIDLVEINEAFG--------AQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
+ IN A G +T A + L + ++ GH LG SG
Sbjct: 297 KPEMVSY--IN-AHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGG 351
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 32.2 bits (74), Expect = 0.24
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
++ L AA+ +G + + VD V +L + D + P + +GIP
Sbjct: 79 TAADLAYEAARKLFAQGAVGADQVDFV----ILCTQAPDYVL-PTSACMLQHRLGIPTHA 133
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
AL +N C SG+ + + G ++ VL D S
Sbjct: 134 GALDVNLGC-SGYVYGLSLAKGLVETGAARCVLLLTADTYS 173
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 31.8 bits (73), Expect = 0.29
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 28 TSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVE 84
+ ++ AA+AAL G ++P V V + ++ I L +V+
Sbjct: 52 DAPPRMAARAARAALGRGDVDPADVSLV----LHSSLWFQGIDLWPAASYVAHEAVGR-H 106
Query: 85 KPALGINRLCGSGFQ-SVVNGAQNILAGDS---QIVLTGGVDNMS 125
PA G+ + C +G ++ + +G +LT G
Sbjct: 107 VPAFGLAQRC-NGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAG 150
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 32.1 bits (74), Expect = 0.29
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVD------PSIMGIGPSPAIKNLLKIAG 310
+GAG V++ + A ++GY + G D P+ G G + LK AG
Sbjct: 249 EGAGIVVLEELEHALARGAKIYAEVIGYGMSG-DAFHITAPTESGEGAQRCMVAALKRAG 307
Query: 311 LGLNDIDLVEINEAFG-------AQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
+ ++ID IN A G + A + + K++++ ++GH LGA+G+
Sbjct: 308 IVPDEIDY--IN-AHGTSTMADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGA 362
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 31.7 bits (73), Expect = 0.38
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 18/119 (15%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVD------PSIMGIGPSPAIKNLLKIAG 310
+GA +++ A ++GY + G D P G G + LK AG
Sbjct: 257 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSG-DAGHITAPDPEGEGALRCMAAALKDAG 315
Query: 311 LGLNDIDLVEINEAFG--------AQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
+ +I IN A A+ A L ++ A GH LGA+G+
Sbjct: 316 VQPEEISY--IN-AHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGA 371
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 31.0 bits (71), Expect = 0.64
Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 36/129 (27%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVGVD------PSIMGIGPSPAIKNLLKIAG 310
+G+G +++ K A L GY + G D P G G A+ L+ +G
Sbjct: 250 EGSGVIVLEEYEHAKRRGAKIYAELCGYGMSG-DAHHITQPPEDGKGAVLAMTRALRQSG 308
Query: 311 LGLNDI-------------DLVE---INEAFGAQTLACLKDLDLDIN--KLNLNGGAIAL 352
L N I D VE I F L + K GA
Sbjct: 309 LCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHA----TSGTLAFSSTK-----GAT-- 357
Query: 353 GHPLGASGS 361
GH LGA+G+
Sbjct: 358 GHLLGAAGA 366
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 31.0 bits (71), Expect = 0.70
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+GA V++ S + P+A ++GY G G A+K L++ +
Sbjct: 264 EGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDV 323
Query: 312 GLNDID 317
+D
Sbjct: 324 APEQVD 329
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting,
PI3-kinase complex I, PRE-autophagosomal structur
protein transport; 2.30A {Saccharomyces cerevisiae}
Length = 220
Score = 30.1 bits (67), Expect = 0.86
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 293 IMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIAL 352
I GP I N L++ + + + EIN A G Q + L + L +N L
Sbjct: 10 ISHSGPFATI-NGLRLGSIPESVVPWKEINAALG-QLILLLATI---NKNLKINLVDYEL 64
Query: 353 GHPLGASGSRIT 364
P+G S S+I
Sbjct: 65 -QPMG-SFSKIK 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.0
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 76 SLHVGIPVEKPALGIN 91
SL + PAL I
Sbjct: 28 SLKLYADDSAPALAIK 43
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 29.8 bits (68), Expect = 1.5
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 257 DGAGAVIIAS-EAAVKSHNLTPLARLVGYSVVGVD---PSIMGIGPSPAIKNLLKIAGLG 312
+G +++ AA L G + D S G AI+ L AG G
Sbjct: 237 EGGAILVLEDSAAAEARGRHDAYGELAGCASTF-DPAPGSGRPAGLERAIRLALNDAGTG 295
Query: 313 LNDIDLV 319
D+D+V
Sbjct: 296 PEDVDVV 302
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding,
transcription, transcription regulation; 1.64A
{Enterobacteria phage lambda}
Length = 80
Score = 27.7 bits (61), Expect = 1.5
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 160 KLPMALTAEKLADKFGITRDKVDEF-----ALRSQTLYKKAQDAGVFKSEIAP 207
K + L+ E +ADK G+ + V AL + A+ V E +P
Sbjct: 21 KNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSP 73
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 29.7 bits (68), Expect = 1.6
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
+ + + AA A+E I + + +V+ T+S + P + +GI
Sbjct: 50 TVSTMGFEAATRAIEMAGIEKDQIGLIVVA-----TTSATHAFPSAACQIQSMLGIK-GC 103
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
PA + C +GF ++ Q + +G + L G D ++
Sbjct: 104 PAFDVAAAC-AGFTYALSVADQYVKSGAVKYALVVGSDVLA 143
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 29.4 bits (67), Expect = 1.8
Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 36/126 (28%)
Query: 31 TQLQTVAAKAALEEGKINPELVDS----VVIG-------------NVLANTSSDSIYLPR 73
+Q A+ A ++P+ +D V +G +L+++ D
Sbjct: 74 SQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAA 133
Query: 74 -----------------HVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIV 116
V+ VG E P ++ C SG SV N + I G + ++
Sbjct: 134 WLSRHMFDYLVPSVMPAEVAWAVGA--EGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVM 191
Query: 117 LTGGVD 122
G D
Sbjct: 192 FAGAAD 197
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 29.4 bits (67), Expect = 1.9
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 35/125 (28%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSVVG-----VDPSIMGIGPSPAIKNLLKIAGL 311
+G+G +++ S + T LA +VGY P G G AIK L+ A +
Sbjct: 252 EGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEI 311
Query: 312 GLNDI-------------DLVE---INEAFGAQTLACLKDLDLDINKLNLNGGAIALGHP 355
+ + E I G ++ ++ GH
Sbjct: 312 SPEQVAYVNAHGTSTPANEKGESGAIVAVLG--------------KEVPVSSTKSFTGHL 357
Query: 356 LGASG 360
LGA+G
Sbjct: 358 LGAAG 362
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 29.5 bits (67), Expect = 1.9
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 28 TSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVE 84
++ T AA+ AL + I E + + + + S D + P VS ++G+
Sbjct: 66 VQASDAATQAARKALIDANIGIEKIGLL----INTSVSRDYLE-PSTASIVSGNLGVSDH 120
Query: 85 KPALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMSQ 126
+ C F + A+ + G+ L + +
Sbjct: 121 CMTFDVANAC-LAFINGMDIAARMLERGEIDYALVVDGETANL 162
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 29.0 bits (66), Expect = 2.4
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
+ T + T AAK AL E ++PE +D +++ T + P V +
Sbjct: 49 TITYMATQAAKEALREANLSPEELDLIILA-----TLTPQKRFPSTACLVQAQLKA-KGV 102
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
A I+ C SGF ++ I +G ++ VL G + +S
Sbjct: 103 YAFDISAAC-SGFIYALDIADSFIKSGKAKNVLVIGAEKLS 142
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 29.1 bits (66), Expect = 2.6
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
+ + L AA+ A+E + PE +D +++ T S + P + +G+
Sbjct: 73 AVSALMVPAARQAIEAAGLLPEDIDLLLVN-----TLSPDHHDPSQACLIQPLLGLR-HI 126
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
P L I SG + ILAG ++ VL + +S
Sbjct: 127 PVLDIRAQA-SGLLYGLQMARGQILAGLARHVLVVCGEVLS 166
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 29.0 bits (66), Expect = 2.8
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 167 AEKLADKFGITRDKVDEFALRSQTLYK--KAQDAGVFKSEIAPVEVTIKRKPVSVDA 221
A+++A+ G ++ A + + LY DA E+ P T + + V DA
Sbjct: 167 AQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQV--EVNPFGETPEGQVVCFDA 221
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 28.8 bits (64), Expect = 3.1
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 277 PLARLVGYSVVGVDPSIMGIGPSPAIKNLLKIAGLGLN----DIDLVEINEAF 325
L+ L GY V D + I + + L ++ DI+ I E +
Sbjct: 137 YLSLL-GYDVTSWDHNENSIA---FLNETKEKENLNISTALYDINAANIQENY 185
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 28.6 bits (65), Expect = 3.1
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
++ L A+ A+ + I PE +D + ++A + D + P + +G +
Sbjct: 50 DTSDLAYEASVKAIADAGIQPEDIDMI----IVATATGDMPF-PTVANMLQERLGT-GKV 103
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
++ C SGF S++ Q + +GD +L G D +S
Sbjct: 104 ASMDQLAAC-SGFMYSMITAKQYVQSGDYHNILVVGADKLS 143
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 28.6 bits (65), Expect = 3.4
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
S+ + T A + AL ++ +D V ++ + P V+ +G
Sbjct: 60 SAASMATEACRRALSNAGLSAADIDGV----IVTTNTHFLQT-PPAAPMVAASLGAK-GI 113
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
++ +GF ++ A I G + +L G + +S
Sbjct: 114 LGFDLSAGA-AGFGYALGAAADMIRGGGAATMLVVGTEKLS 153
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase
(PDT), staphylococcus aureu aureus MU50, structural
genomics, PSI-2; 2.30A {Staphylococcus aureus subsp}
SCOP: c.94.1.1 d.58.18.3
Length = 267
Score = 28.3 bits (64), Expect = 3.6
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 248 TAGSASGICDGAGAVIIASEAAVKSHNLTPLAR 280
T S + I +G A IA + +++ TP+
Sbjct: 131 TIQSLTKIENGVAA--IAPLGSGEAYGFTPIDT 161
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 28.8 bits (64), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 94 CGSGFQSVVNGAQNILAGDSQIVLTGGVD 122
C + +SV G + IL+G ++I + GG D
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD 1333
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 28.6 bits (65), Expect = 3.7
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
+ + AAK A+E +INP+ ++ +++ T+S S P V + I +
Sbjct: 57 TVATMGFEAAKNAIEAAQINPQDIELIIVA-----TTSHSHAYPSAACQVQGLLNI-DDA 110
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
+ + C +GF ++ Q I AG + L G D S
Sbjct: 111 ISFDLAAAC-TGFVYALSVADQFIRAGKVKKALVIGSDLNS 150
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.4 bits (63), Expect = 3.8
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 277 PLARLVGYSVVGVDPS 292
L G+SV VD S
Sbjct: 74 MLVEE-GFSVTSVDAS 88
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 28.3 bits (64), Expect = 4.1
Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
+ + A++ ALE ++P +D V V++ ++ P ++ +G
Sbjct: 59 TIQVMGVAASRRALEHAGVDPAEIDLV----VVSTMTNFVHT-PPLSVAIAHELGAD-NA 112
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
++ C +GF ++ A + +G S+ VL + M+
Sbjct: 113 GGFDLSAAC-AGFCHALSIAADAVESGGSRHVLVVATERMT 152
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 28.7 bits (64), Expect = 4.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 94 CGSGFQSVVNGAQNILAGDSQIVLTGGVDNMS 125
C + +S+ G I+ G +++ L GG D+
Sbjct: 1280 CATAVESLDVGYDTIMQGKARVCLVGGFDDFQ 1311
Score = 28.4 bits (63), Expect = 5.8
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 4/65 (6%)
Query: 257 DGAGAVIIASEAAVKSHNLTPLARLVGYSV----VGVDPSIMGIGPSPAIKNLLKIAGLG 312
G G +I + + + S +G G G +
Sbjct: 1355 QGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPSP 1414
Query: 313 LNDID 317
L DI
Sbjct: 1415 LLDIK 1419
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 28.3 bits (63), Expect = 4.3
Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 277 PLARLVGYSVVGVDPS 292
P L G+ V ++ S
Sbjct: 99 PFLDL-GWEVTALELS 113
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 28.0 bits (62), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 288 GVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEA 324
G ++ GI A+ + + AG+ ++DI L+ INEA
Sbjct: 42 GTLRNVFGI--QEALALVARGAGIAVSDISLIRINEA 76
>3luy_A Probable chorismate mutase; structural genomics, APC38059,
3-phenylp PSI-2, protein structure initiative; HET: PPY;
2.00A {Bifidobacterium adolescentis}
Length = 329
Score = 28.0 bits (63), Expect = 5.6
Identities = 4/33 (12%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 248 TAGSASGICDGAGAVIIASEAAVKSHNLTPLAR 280
A + + G A + +++T +
Sbjct: 140 NAAACRDLIPGEIA--FGPAICGELYDITRIGT 170
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 27.5 bits (61), Expect = 6.3
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 18/66 (27%)
Query: 227 PQTTLETLAKLPPVFKKDGVVTAGSASGICDGAGAVIIASEAAVKSHNLTPLARLVGYSV 286
P+ TL+ L+ + + +K + G G G + LA V V
Sbjct: 31 PEVTLKALSFIDNLTEKSLIADIGC------GTGGQTMV------------LAGHVTGQV 72
Query: 287 VGVDPS 292
G+D
Sbjct: 73 TGLDFL 78
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 27.8 bits (63), Expect = 6.4
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 167 AEKLADKFGITRDKVDEFALRSQTLYK--KAQDAGVFKSEIAPVEVTIKRKPVSVDA 221
+LA K G+ V +F L +D + EI P+ +T + + +D
Sbjct: 160 GRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALI--EINPLVITKQGDLICLDG 214
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 27.6 bits (61), Expect = 7.5
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 288 GVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEA 324
G +I G A++ L ++D+ + +NEA
Sbjct: 41 GTRDNIAGT--LAALEQALAKTPWSMSDVSRIYLNEA 75
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY,
DNA-binding, nucleotide-binding, transcript regulation,
winged HTH motif.; 2.90A {Bacillus subtilis} SCOP:
a.4.5.66
Length = 102
Score = 26.2 bits (57), Expect = 7.6
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 165 LTAEKLADKFGITRDKVDEFALRSQTLYKKAQDAGVFKS 203
L A K+AD+ GITR + ALR K + AGV +S
Sbjct: 44 LVASKIADRVGITRSVIVN-ALR------KLESAGVIES 75
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta
barrel, bacterial microcompartmen propanediol, signaling
protein; 1.80A {Salmonella typhimurium}
Length = 124
Score = 26.4 bits (58), Expect = 7.8
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 233 TLAKL-----PPVFKKDGVVTAGSASGI--CDGAGAVIIASEAAVKSHN 274
TLA L +FKK G+ A SA GI + A IIA + A KS
Sbjct: 21 TLAHLIANPGKDLFKKLGLQDAVSAIGILTITPSEASIIACDIATKSGA 69
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural
genomics, JOI for structural genomics, JCSG; 2.50A
{Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Length = 218
Score = 27.0 bits (60), Expect = 8.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 300 PAIKNLLKIAGLGLNDIDLV 319
+K LL L + D+D+V
Sbjct: 51 VVVKKLLDELDLKVKDLDVV 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 27.2 bits (61), Expect = 8.4
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 291 PSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKL 343
+ S + L+ + L L + + + L LK L + + L
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPL 218
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 27.4 bits (61), Expect = 8.4
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 298 PSPAIKNL--LKIAGLGLNDIDLVEINEAFGAQTLACLKDLDLDINKL 343
+ L L+ + LV N F + L+ L L LD N+
Sbjct: 46 NETSFSRLQDLQFLKVEQQTPGLVIRNNTF--RGLSSLIILKLDYNQF 91
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 27.6 bits (62), Expect = 8.9
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 213 KRKPVSVDADEHP---KPQTTLETLAKLPPVFKKDGVVTAG 250
K P + + KPQT ++ L+K+ + +VT G
Sbjct: 446 KEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTG 486
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 27.0 bits (61), Expect = 9.7
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPR---HVSLHVGIPVEK 85
++ L A + L E VD+V ++A + D+++ P V G+ +
Sbjct: 49 YTSDLAFKAVEDLLRRHPGALEGVDAV----IVATNTPDALF-PDTAALVQARFGL--KA 101
Query: 86 PALGINRLCGSGFQ-SVVNGAQNILAGDSQIVLTGGVDNMS 125
A + C G+ ++ + AG +Q VL G + +S
Sbjct: 102 FAYDLLAGC-PGWIYALAQAHALVEAGLAQKVLAVGAEALS 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,677,295
Number of extensions: 368157
Number of successful extensions: 1450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1372
Number of HSP's successfully gapped: 102
Length of query: 372
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 277
Effective length of database: 4,049,298
Effective search space: 1121655546
Effective search space used: 1121655546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)