RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16700
(372 letters)
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 234 bits (599), Expect = 2e-76
Identities = 100/269 (37%), Positives = 153/269 (56%), Gaps = 3/269 (1%)
Query: 5 TKGIFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANT 64
T I I +A RT G++ G F T + +L A LE + V+ V++G V
Sbjct: 2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQV--LP 59
Query: 65 SSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+ + R ++ G+P E A G+N+L GSG ++V G Q I GD+ I++ GG+++M
Sbjct: 60 AGEGQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESM 119
Query: 125 SQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDEF 184
S APH ++R GV +G ++ + GLTD + M TAE +A ++ ++RD+ D F
Sbjct: 120 SMAPHCA-HLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAF 178
Query: 185 ALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFKKD 244
A+ SQ + AQ G FK EI P V ++ ++VDADE+ + TL+++AKL P F K+
Sbjct: 179 AVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKE 238
Query: 245 GVVTAGSASGICDGAGAVIIASEAAVKSH 273
G VTAG+ASG+ DGA A ++ SEA
Sbjct: 239 GTVTAGNASGLNDGAAAALLMSEAEASRR 267
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 222 bits (566), Expect = 2e-71
Identities = 96/273 (35%), Positives = 143/273 (52%), Gaps = 6/273 (2%)
Query: 8 IFIVAAKRTPFGTYGGKFTKTSSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSD 67
+IV A RTP G +GG L A ++ + E V+ V G D
Sbjct: 2 AWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCAN-QAGED 60
Query: 68 SIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNMSQA 127
+ + R L G PVE +NRLCGSG ++V A+ I AG+ ++ + GV++MS+A
Sbjct: 61 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 120
Query: 128 PHAVRNIRFGVPLGGQMELEDT-----LWTGLTDTYCKLPMALTAEKLADKFGITRDKVD 182
P+AV G P G + + T + + Y M TAE LA+ +GI R++ D
Sbjct: 121 PYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQD 180
Query: 183 EFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLAKLPPVFK 242
FAL S +A + G F+ E+ PV V ++ + V+ DE P+ T+LE LA L PVF+
Sbjct: 181 RFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALRPVFR 240
Query: 243 KDGVVTAGSASGICDGAGAVIIASEAAVKSHNL 275
+ G VTAG++S + DGA AV++ S+ K+H L
Sbjct: 241 EGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGL 273
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 160 bits (404), Expect = 2e-47
Identities = 80/277 (28%), Positives = 122/277 (44%), Gaps = 19/277 (6%)
Query: 1 MSAITKGIFIVAAKRTPFGT-YGGKFTKTSSTQLQTVAAKAALE----EGKINPELVDSV 55
+ + + IVAA R+ G + G F ++ L + + + L++ V
Sbjct: 5 LEKRPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEV 64
Query: 56 VIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQI 115
GNVL R L GIP P + +NR C SG +V + A I G I
Sbjct: 65 ACGNVL--NVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDI 122
Query: 116 VLTGGVDNMSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFG 175
L GV++M+ V + M + L C +PM +T E +A F
Sbjct: 123 GLALGVESMTNNYKNVNPLG--------MISSEELQKNREAKKCLIPMGITNENVAANFK 174
Query: 176 ITRDKVDEFALRSQTLYKKAQDAGVFKSEIAPVEVTIKRKPVSVDADEHPKPQTTLETLA 235
I+R DEFA S KA++ G+F+ EI P+++ +DE P+P T E+L+
Sbjct: 175 ISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS---ICQSDEGPRPNVTAESLS 231
Query: 236 KLPPVFKKD-GVVTAGSASGICDGAGAVIIASEAAVK 271
+ P F KD G TAG+AS + DG V++A +
Sbjct: 232 SIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVAN 268
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 158 bits (399), Expect = 1e-46
Identities = 87/270 (32%), Positives = 119/270 (44%), Gaps = 18/270 (6%)
Query: 6 KGIFIVAAKRTPFGTY-GGKFTKTSSTQLQTVAAKAALE-EGKINPELVDSVVIGNVLAN 63
+ + IV RTP G GG T + + LE K++P V+ V I +
Sbjct: 5 RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDV-IWGCVNQ 63
Query: 64 TSSDSIYLPRHVSLHVGIPVEKPALGINRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDN 123
T + R SL IP A ++RLCGS ++ AQ I+ G+ + + GGV++
Sbjct: 64 TLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEH 123
Query: 124 MSQAPHAVRNIRFGVPLGGQMELEDTLWTGLTDTYCKLPMALTAEKLADKFGITRDKVDE 183
M L M LTAE L GI+R++ D
Sbjct: 124 MGHVSMMHGVDPNP-------------HMSLYAAKASGMMGLTAEMLGKMHGISREQQDA 170
Query: 184 FALRSQTLYKKAQDAGVFKSEIAPVEVTIKR-KPVSVDADEHPKPQTTLETLAKLPPVFK 242
FA+RS L KA G FK EI P++ + D DE +P TTLE+LA L P F
Sbjct: 171 FAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFN 230
Query: 243 -KDGVVTAGSASGICDGAGAVIIASEAAVK 271
K G VTAG++S I DGA +I+ S K
Sbjct: 231 PKGGTVTAGTSSQITDGASCMIVMSAQRAK 260
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 121 bits (304), Expect = 3e-34
Identities = 52/98 (53%), Positives = 70/98 (71%)
Query: 275 LTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLK 334
+ PL R+V ++ VGVDP +MG GP PA + L+ AG + D+DLVE NEAF AQ A K
Sbjct: 1 IQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK 60
Query: 335 DLDLDINKLNLNGGAIALGHPLGASGSRITAHLVHELR 372
DL D + +N+NGGAIA+GHP+GASG+RI L+ E++
Sbjct: 61 DLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMK 98
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 112 bits (282), Expect = 4e-31
Identities = 52/99 (52%), Positives = 69/99 (69%)
Query: 274 NLTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACL 333
NL L R + + VGV P IMG+GP+ AI +L+ GL + DID+ EINEAF AQ L C+
Sbjct: 2 NLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCI 61
Query: 334 KDLDLDINKLNLNGGAIALGHPLGASGSRITAHLVHELR 372
L +D+NK+N GGAIALGHPLG +G+R A ++ EL+
Sbjct: 62 HKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELK 100
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 112 bits (280), Expect = 6e-31
Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 2/98 (2%)
Query: 277 PLARLVGYSVVGVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLKD- 335
PLAR+ +V GV P IMGIGP PA + L+ AGL +D+ L+E+NEAF AQ LA L++
Sbjct: 2 PLARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREW 61
Query: 336 -LDLDINKLNLNGGAIALGHPLGASGSRITAHLVHELR 372
L ++ +LN NGGAIALGHPLGASG+RI LVHE+R
Sbjct: 62 SLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMR 99
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 98.6 bits (245), Expect = 9e-26
Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 275 LTPLARLVGYSVVGVDPSIMGIGPSPAIKNLLKIAGLGLNDIDLVEINEAFGAQTLACLK 334
L PLA + +V GVDP+IMG GP PA + LK AGL + DID +E+NEAF AQ L LK
Sbjct: 2 LEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLK 61
Query: 335 D---LDLDINKLNLNGGAIALGHPLGASGSRITAHLVHELR 372
D LD K+NL+GGAIALGHP G SG+RI+ L++ ++
Sbjct: 62 DLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 102
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 29.2 bits (64), Expect = 0.64
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 90 INRLCGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
++ C SG SV N + I G + ++ G D
Sbjct: 163 VSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTP 197
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
factor large subunit DdrA {Klebsiella oxytoca [TaxId:
571]}
Length = 241
Score = 29.4 bits (66), Expect = 0.65
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 301 AIKNLLKIAGLGLNDIDLVEINEA 324
A+ + + AG+ ++DI L+ INEA
Sbjct: 53 ALALVARGAGIAVSDISLIRINEA 76
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional
pleiotropic repressor CodY, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 91
Score = 27.8 bits (62), Expect = 0.70
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 165 LTAEKLADKFGITRDKVDEFALRSQTLYKKAQDAGVFKSE 204
L A K+AD+ GITR V ALR K + AGV +S
Sbjct: 35 LVASKIADRVGITR-SVIVNALR------KLESAGVIESR 67
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 200
Score = 28.2 bits (62), Expect = 1.3
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 37 AAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPRHVSLHVGIPVEKPALGINRLCGS 96
+ AL++ ++ +D ++ + T L + +G + I +L +
Sbjct: 82 VIQRALDDAELLATDIDVIIYVSC---TGFMMPSLTAWLINEMGFDSTTRQIPIAQLGCA 138
Query: 97 GFQSVVNGAQN-ILAGDSQIVLTGGVDNMS 125
+ +N A + A L + S
Sbjct: 139 AGGAAINRAHDFCTAYPEANALIVACEFCS 168
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 27.7 bits (60), Expect = 2.1
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 94 CGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
G ++ + + I G + +V++GGVD+
Sbjct: 160 QAGGLDALGHARRTIRRG-TPLVVSGGVDSA 189
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 372
Score = 26.3 bits (57), Expect = 6.8
Identities = 11/97 (11%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 29 SSTQLQTVAAKAALEEGKINPELVDSVVIGNVLANTSSDSIYLPRHVSLHVGIPVEKPAL 88
+ L +K AL + +V+ +T + + + +G+ +
Sbjct: 91 HAVPLAVDVSKRALAGLPYRAAEIGLLVLAT---STGFIAPGVDVAIVKELGLSPSISRV 147
Query: 89 GINRL-CGSGFQSVVNGAQNILAGDSQIVLTGGVDNM 124
+N + C + ++ + A + L ++
Sbjct: 148 VVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELC 184
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.8 bits (56), Expect = 7.2
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 316 IDLVEINEAFGAQTLACLKDLDLDINKLNLNGGAIALGHPLGASGS 361
I + +++ F + L +++++I G + LG SG+
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIEN----GERFGI---LGPSGA 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,307,091
Number of extensions: 60162
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 20
Length of query: 372
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,213,086
Effective search space: 345729510
Effective search space used: 345729510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)