BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16701
(272 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|170031575|ref|XP_001843660.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167870488|gb|EDS33871.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 236
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 119/145 (82%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
RN V T+S+GC L+L IN R R SEYNP +FHG++M+I +PR T L F+SGK++ GAK
Sbjct: 64 RNCVATVSLGCELNLQSINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKIVCTGAK 123
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+EHD LA+RKFA+I++++G+ +K+ FK+ N+V T D+RFPV+L+ L+ VH QFSSYEP
Sbjct: 124 NEHDANLAARKFARIIQKVGYNVKFLEFKVQNLVATVDLRFPVRLENLNQVHGQFSSYEP 183
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRMVKPRVVLLIFVNG+I
Sbjct: 184 ELFPGLIYRMVKPRVVLLIFVNGKI 208
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N V T+S+GC L+L IN R R SEYNP +FHG++M+I +PR T L F+SGK++ GAK+
Sbjct: 65 NCVATVSLGCELNLQSINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKIVCTGAKN 124
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYSEYNP 156
EHD LA+RKFA+I++++G+ + F F+ N+V T+ + P+ L +N ++S Y P
Sbjct: 125 EHDANLAARKFARIIQKVGY-NVKFLEFKVQNLVATVDLRFPVRLENLNQVHGQFSSYEP 183
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F +GK++ GAK E + + + IL+
Sbjct: 184 ELFPGLIYRMVKPRVVLLIFVNGKIVFTGAKSEWEIRESLENIYPILQ 231
>gi|383860592|ref|XP_003705773.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 241
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 120/152 (78%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E++ +N+V T+++G L L QIN+R R SEYNP +F GLIM+I NPR T L F SGK
Sbjct: 62 EVLEPCLQNVVSTVNLGTELKLMQINTRTRNSEYNPARFTGLIMRIRNPRATALIFHSGK 121
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
L+ GA+ E D LA+RKFA+I+++LG P+K+ FKI NIV TCD++FP+KL+ L+H+H
Sbjct: 122 LVCTGARCEEDSYLATRKFARIIQKLGFPVKFYNFKIQNIVATCDLKFPIKLENLNHIHG 181
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPEL+PGLIYRMV PRVVLLIFVNG+I
Sbjct: 182 QFSSYEPELYPGLIYRMVSPRVVLLIFVNGKI 213
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G L L QIN+R R SEYNP +F GLIM+I NPR T L F SGKL+ GA+
Sbjct: 70 NVVSTVNLGTELKLMQINTRTRNSEYNPARFTGLIMRIRNPRATALIFHSGKLVCTGARC 129
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYSEYNP 156
E D LA+RKFA+I+++LG P + F+ F+ N+V T + P+ L +N ++S Y P
Sbjct: 130 EEDSYLATRKFARIIQKLGFP-VKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEP 188
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
+ GLI ++++PR L F +GK+++ GAK+ + + A ILK
Sbjct: 189 ELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRTELQDALNNIYPILK 236
>gi|345492218|ref|XP_001603648.2| PREDICTED: TATA-box-binding protein-like [Nasonia vitripennis]
Length = 238
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 121/155 (78%)
Query: 118 GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 177
G E++ +N+V T+S+GC L+L IN+R R SEYNP +F GLIM+I NPR T L F+
Sbjct: 56 GGKELVDPMLQNVVSTVSLGCELNLTYINTRTRNSEYNPARFTGLIMRIRNPRVTALIFR 115
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SGKL+ GA+ E D LA++KFA+I++++G P+K++ FKI NIV T D++FP+KL+ L H
Sbjct: 116 SGKLVCTGARCEEDSFLAAKKFARIIQKIGFPVKFRDFKIQNIVATADLKFPIKLENLSH 175
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H QFSSYEPEL+PGLIYRMV PRVVLLIFVNG+I
Sbjct: 176 KHGQFSSYEPELYPGLIYRMVLPRVVLLIFVNGKI 210
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+S+GC L+L IN+R R SEYNP +F GLIM+I NPR T L F+SGKL+ GA+
Sbjct: 67 NVVSTVSLGCELNLTYINTRTRNSEYNPARFTGLIMRIRNPRVTALIFRSGKLVCTGARC 126
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D LA++KFA+I++++G P + F +N+V T + P+ L ++ + ++S Y P
Sbjct: 127 EEDSFLAAKKFARIIQKIGFPVKFRDFKIQNIVATADLKFPIKLENLSHKHGQFSSYEPE 186
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
+ GLI +++ PR L F +GK+++ GAK+ + K A ILK
Sbjct: 187 LYPGLIYRMVLPRVVLLIFVNGKIVLTGAKNRQELKDALHNIYPILK 233
>gi|157126257|ref|XP_001654561.1| TATA binding protein, putative [Aedes aegypti]
gi|108882533|gb|EAT46758.1| AAEL002079-PA [Aedes aegypti]
Length = 234
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 118/145 (81%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
RN V T+S+GC L+L IN R+R SEYNP +FHG++M+I PR T L F+SGK++ GA+
Sbjct: 62 RNCVATVSLGCELNLQAINFRLRNSEYNPARFHGVVMRIREPRCTALVFRSGKIVCTGAR 121
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+E D LA+RKFA+I+++LG+ +++ FK+ N+V T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 122 NEADAYLAARKFARIIQKLGYSVRFIEFKVQNLVATVDLRFPIRLENLNQVHGQFSSYEP 181
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRMVKPRVVLLIFVNG+I
Sbjct: 182 ELFPGLIYRMVKPRVVLLIFVNGKI 206
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N V T+S+GC L+L IN R+R SEYNP +FHG++M+I PR T L F+SGK++ GA++
Sbjct: 63 NCVATVSLGCELNLQAINFRLRNSEYNPARFHGVVMRIREPRCTALVFRSGKIVCTGARN 122
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E D LA+RKFA+I+++LG+ I F +N+V T+ + P+ L +N ++S Y P
Sbjct: 123 EADAYLAARKFARIIQKLGYSVRFIEFKVQNLVATVDLRFPIRLENLNQVHGQFSSYEPE 182
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F +GK++ GAK E + + IL+
Sbjct: 183 LFPGLIYRMVKPRVVLLIFVNGKIVFTGAKSEREVTDSLENIYPILQSF 231
>gi|66498987|ref|XP_394229.2| PREDICTED: TATA-box-binding protein-like [Apis mellifera]
Length = 241
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 117/152 (76%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E+I +N+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK
Sbjct: 62 EVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGK 121
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
++ GA+ E D LA+RKFA+I+++LG K+ FKI NIV TCD++FP+KL+ L+H+H
Sbjct: 122 IVCTGARSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHG 181
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPEL+PGLIYRMV PRVVLLIFVNG++
Sbjct: 182 QFSSYEPELYPGLIYRMVSPRVVLLIFVNGKV 213
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK++ GA+
Sbjct: 70 NVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGARS 129
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFF-FRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E D LA+RKFA+I+++LG + F +N+V T + P+ L +N ++S Y P
Sbjct: 130 EEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEPE 189
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
+ GLI ++++PR L F +GK+++ GAK+ + + A ILK
Sbjct: 190 LYPGLIYRMVSPRVVLLIFVNGKVVLTGAKNRTELQDALNNIYPILK 236
>gi|380013265|ref|XP_003690685.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 241
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 117/152 (76%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E+I +N+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK
Sbjct: 62 EVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGK 121
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
++ GA+ E D LA+RKFA+I+++LG K+ FKI NIV TCD++FP+KL+ L+H+H
Sbjct: 122 IVCTGARSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHG 181
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPEL+PGLIYRMV PRVVLLIFVNG++
Sbjct: 182 QFSSYEPELYPGLIYRMVSPRVVLLIFVNGKV 213
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK++ GA+
Sbjct: 70 NVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGARS 129
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFF-FRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E D LA+RKFA+I+++LG + F +N+V T + P+ L +N ++S Y P
Sbjct: 130 EEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEPE 189
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
+ GLI ++++PR L F +GK+++ GAK+ + + A ILK
Sbjct: 190 LYPGLIYRMVSPRVVLLIFVNGKVVLTGAKNRTELQDALNNIYPILK 236
>gi|350425498|ref|XP_003494140.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 241
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 118/152 (77%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E+I +N+V T+++G L L IN+R R SEYNP +F GL+M+I NPR T L F SGK
Sbjct: 62 EVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNPARFTGLVMRIRNPRATALIFHSGK 121
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
L+ GA+ E D LA+RKFA+I+++LG +K+ FKI NIV TCD++FP+KL+ L+H+H
Sbjct: 122 LVCTGARCEEDSFLATRKFARIIQKLGFTVKFYNFKIQNIVATCDLKFPIKLENLNHIHG 181
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPEL+PGLIYRMV PRVVLLIFVNG+I
Sbjct: 182 QFSSYEPELYPGLIYRMVSPRVVLLIFVNGKI 213
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 106/168 (63%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G L L IN+R R SEYNP +F GL+M+I NPR T L F SGKL+ GA+
Sbjct: 70 NVVSTVNLGIELPLMYINTRTRNSEYNPARFTGLVMRIRNPRATALIFHSGKLVCTGARC 129
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYSEYNP 156
E D LA+RKFA+I+++LG + F+ F+ N+V T + P+ L +N ++S Y P
Sbjct: 130 EEDSFLATRKFARIIQKLGF-TVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEP 188
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
+ GLI ++++PR L F +GK+++ GAK+ + + A ILK
Sbjct: 189 ELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRVELQDALNNIYPILK 236
>gi|340728982|ref|XP_003402790.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
Length = 241
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 118/152 (77%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E+I +N+V T+++G L L IN+R R SEYNP +F GL+M+I NPR T L F SGK
Sbjct: 62 EVIEPCLQNVVSTVNLGIQLPLMYINTRTRNSEYNPARFTGLVMRIRNPRATALIFHSGK 121
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
L+ GA+ E D LA+RKFA+I+++LG +K+ FKI NIV TCD++FP+KL+ L+H+H
Sbjct: 122 LVCTGARCEEDSFLATRKFARIIQKLGFTVKFYNFKIQNIVATCDLKFPIKLENLNHIHG 181
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPEL+PGLIYRMV PRVVLLIFVNG+I
Sbjct: 182 QFSSYEPELYPGLIYRMVSPRVVLLIFVNGKI 213
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 106/168 (63%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G L L IN+R R SEYNP +F GL+M+I NPR T L F SGKL+ GA+
Sbjct: 70 NVVSTVNLGIQLPLMYINTRTRNSEYNPARFTGLVMRIRNPRATALIFHSGKLVCTGARC 129
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYSEYNP 156
E D LA+RKFA+I+++LG + F+ F+ N+V T + P+ L +N ++S Y P
Sbjct: 130 EEDSFLATRKFARIIQKLGF-TVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEP 188
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
+ GLI ++++PR L F +GK+++ GAK+ + + A ILK
Sbjct: 189 ELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRAELQDALNNIYPILK 236
>gi|194863019|ref|XP_001970236.1| GG10512 [Drosophila erecta]
gi|190662103|gb|EDV59295.1| GG10512 [Drosophila erecta]
Length = 224
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 117/146 (80%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 110
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+HVH QFSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYE 170
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKV 196
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 53 NIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGARN 112
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 113 EIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYEPE 172
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 173 MFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKD 206
>gi|17136834|ref|NP_476939.1| TBP-related factor [Drosophila melanogaster]
gi|25091428|sp|Q27896.1|TRF_DROME RecName: Full=TBP-related factor
gi|11136|emb|CAA50185.1| TBP-related factor [Drosophila melanogaster]
gi|11138|emb|CAA50186.1| TBP-related factor [Drosophila melanogaster]
gi|7297339|gb|AAF52600.1| TBP-related factor [Drosophila melanogaster]
gi|21711771|gb|AAM75076.1| RE61442p [Drosophila melanogaster]
gi|220942420|gb|ACL83753.1| Trf-PA [synthetic construct]
gi|220955718|gb|ACL90402.1| Trf-PA [synthetic construct]
gi|445085|prf||1908393A TATA-binding protein-related factor
Length = 224
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 117/146 (80%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 110
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+HVH QFSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYE 170
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKV 196
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 53 NIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGARN 112
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 113 EIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYEPE 172
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 173 MFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKD 206
>gi|125984322|ref|XP_001355925.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|195172938|ref|XP_002027252.1| GL24756 [Drosophila persimilis]
gi|54644243|gb|EAL32984.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|194113089|gb|EDW35132.1| GL24756 [Drosophila persimilis]
Length = 220
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 116/146 (79%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 47 LQNIVATFSVNCELDLKTINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 106
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E D + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 107 RNERDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 166
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 167 PEMFPGLIYRMVKPRIVLLIFVNGKV 192
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 49 NIVATFSVNCELDLKTINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGARN 108
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E D + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 109 ERDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 168
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 169 MFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKD 202
>gi|194759081|ref|XP_001961778.1| GF14757 [Drosophila ananassae]
gi|190615475|gb|EDV30999.1| GF14757 [Drosophila ananassae]
Length = 224
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 116/146 (79%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 110
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E D + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 111 RNEIDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 170
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKV 196
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 53 NIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGARN 112
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E D + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 113 EIDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 172
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 173 MFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKD 206
>gi|195434401|ref|XP_002065191.1| GK15318 [Drosophila willistoni]
gi|194161276|gb|EDW76177.1| GK15318 [Drosophila willistoni]
Length = 226
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 116/146 (79%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 53 LQNIVATFSVACELDLKSINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 112
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 113 RNEIEADIGSRKFARILQKLGFPVKFTDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 172
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 173 PEMFPGLIYRMVKPRIVLLIFVNGKV 198
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 55 NIVATFSVACELDLKSINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGARN 114
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 115 EIEADIGSRKFARILQKLGFPVKFTDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 174
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 175 MFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKD 208
>gi|118789378|ref|XP_317373.3| AGAP008084-PA [Anopheles gambiae str. PEST]
gi|116123189|gb|EAA12691.4| AGAP008084-PA [Anopheles gambiae str. PEST]
Length = 200
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/144 (60%), Positives = 112/144 (77%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
RN V T+SVGC L+L IN R R SEYNP +FHG++M+I +PR T L F+SGK++ GAK
Sbjct: 57 RNCVATVSVGCELNLKTINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKVICTGAK 116
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+E L RKF +I+++LG +K+ FK+ N+V T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 117 NEQQAHLGLRKFVRIIQKLGFDVKFLDFKVQNLVATADLRFPIRLENLNQVHGQFSSYEP 176
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGR 271
ELFPGLIYRMVKPRVVLLIFVNG+
Sbjct: 177 ELFPGLIYRMVKPRVVLLIFVNGK 200
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N V T+SVGC L+L IN R R SEYNP +FHG++M+I +PR T L F+SGK++ GAK+
Sbjct: 58 NCVATVSVGCELNLKTINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKVICTGAKN 117
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYSEYNP 156
E L RKF +I+++LG ++ F F+ N+V T + P+ L +N ++S Y P
Sbjct: 118 EQQAHLGLRKFVRIIQKLGF-DVKFLDFKVQNLVATADLRFPIRLENLNQVHGQFSSYEP 176
Query: 157 GKFHGLIMKILNPRTTCLAFQSGK 180
F GLI +++ PR L F +GK
Sbjct: 177 ELFPGLIYRMVKPRVVLLIFVNGK 200
>gi|195117828|ref|XP_002003449.1| GI17918 [Drosophila mojavensis]
gi|193914024|gb|EDW12891.1| GI17918 [Drosophila mojavensis]
Length = 220
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 115/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 47 LQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 106
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 107 RNETEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 166
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG+I
Sbjct: 167 PEMFPGLIYRMVKPRIVLLIFVNGKI 192
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 49 NIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGARN 108
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 109 ETEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 168
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 169 MFPGLIYRMVKPRIVLLIFVNGKIVFTGAKSRKD 202
>gi|195472903|ref|XP_002088737.1| GE18732 [Drosophila yakuba]
gi|194174838|gb|EDW88449.1| GE18732 [Drosophila yakuba]
Length = 224
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 116/146 (79%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGA 110
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 170
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKV 196
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 53 NIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGARN 112
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 113 EIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 172
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 173 MFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKD 206
>gi|195577454|ref|XP_002078585.1| GD23502 [Drosophila simulans]
gi|194190594|gb|EDX04170.1| GD23502 [Drosophila simulans]
Length = 224
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 116/146 (79%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 110
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 170
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKV 196
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 53 NIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGARN 112
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 113 EIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 172
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 173 MFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKD 206
>gi|195339082|ref|XP_002036150.1| GM16720 [Drosophila sechellia]
gi|194130030|gb|EDW52073.1| GM16720 [Drosophila sechellia]
Length = 224
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 116/146 (79%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 110
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 170
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKV 196
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 53 NIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGARN 112
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 113 EIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 172
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 173 MFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKD 206
>gi|195388008|ref|XP_002052684.1| GJ17690 [Drosophila virilis]
gi|194149141|gb|EDW64839.1| GJ17690 [Drosophila virilis]
Length = 220
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 115/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 47 LQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 106
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 107 RNEMEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 166
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG+I
Sbjct: 167 PEMFPGLIYRMVKPRIVLLIFVNGKI 192
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 49 NIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGARN 108
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 109 EMEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 168
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 169 MFPGLIYRMVKPRIVLLIFVNGKIVFTGAKSRKD 202
>gi|332018160|gb|EGI58766.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 240
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ L L IN R R SEYNP +F GLIM+I NPR T L F+SGKL+ GA
Sbjct: 67 LQNVVSTVNLQTELKLMYINVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ E D LA++KFA+I+++LG P+K+ FKI NIV TCD++FP+KL+ L+ H QFSSYE
Sbjct: 127 RSEQDSFLAAKKFARIIQKLGFPVKFSSFKIQNIVATCDLKFPIKLEILYQCHGQFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PEL+PGL YRM PRVVLLIFVNG++
Sbjct: 187 PELYPGLTYRMYSPRVVLLIFVNGKV 212
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ L L IN R R SEYNP +F GLIM+I NPR T L F+SGKL+ GA+
Sbjct: 69 NVVSTVNLQTELKLMYINVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGARS 128
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E D LA++KFA+I+++LG P + F +N+V T + P+ L + ++S Y P
Sbjct: 129 EQDSFLAAKKFARIIQKLGFPVKFSSFKIQNIVATCDLKFPIKLEILYQCHGQFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+ GL ++ +PR L F +GK+++ GAK+ + + A
Sbjct: 189 LYPGLTYRMYSPRVVLLIFVNGKVVLTGAKNRTELQDA 226
>gi|270005208|gb|EFA01656.1| hypothetical protein TcasGA2_TC007228 [Tribolium castaneum]
Length = 238
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 113/145 (77%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N V T+ + LDL IN+R R SEYNP +FHGLIM++ +PRTT L FQ+GK++ GAK
Sbjct: 66 QNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLIMRLRDPRTTALIFQTGKIVCTGAK 125
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E D LAS+KFA+I+++LG IK+ FKI N+V TCD+RFP+KL++L +H QF SYEP
Sbjct: 126 SEQDALLASKKFARIIQKLGFDIKFDNFKIQNLVATCDLRFPIKLESLSLLHGQFCSYEP 185
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPG+IYRM+KP + LLIFVNG+I
Sbjct: 186 ELFPGIIYRMIKPHLCLLIFVNGKI 210
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 105/181 (58%), Gaps = 4/181 (2%)
Query: 29 GGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 88
G+ + T N V T+ + LDL IN+R R SEYNP +FHGLIM++ +PRTT L FQ
Sbjct: 56 AGEPHTNITIQNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLIMRLRDPRTTALIFQ 115
Query: 89 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQIN 146
+GK++ GAK E D LAS+KFA+I+++LG +I F F +N+V T + P+ L ++
Sbjct: 116 TGKIVCTGAKSEQDALLASKKFARIIQKLGF-DIKFDNFKIQNLVATCDLRFPIKLESLS 174
Query: 147 -SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
++ Y P F G+I +++ P L F +GK++ G+K K + IL+
Sbjct: 175 LLHGQFCSYEPELFPGIIYRMIKPHLCLLIFVNGKIVFTGSKSREGIKESLDNIYPILRS 234
Query: 206 L 206
Sbjct: 235 F 235
>gi|189236649|ref|XP_969256.2| PREDICTED: similar to TATA-box-binding protein [Tribolium
castaneum]
Length = 236
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 113/145 (77%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N V T+ + LDL IN+R R SEYNP +FHGLIM++ +PRTT L FQ+GK++ GAK
Sbjct: 64 QNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLIMRLRDPRTTALIFQTGKIVCTGAK 123
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E D LAS+KFA+I+++LG IK+ FKI N+V TCD+RFP+KL++L +H QF SYEP
Sbjct: 124 SEQDALLASKKFARIIQKLGFDIKFDNFKIQNLVATCDLRFPIKLESLSLLHGQFCSYEP 183
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPG+IYRM+KP + LLIFVNG+I
Sbjct: 184 ELFPGIIYRMIKPHLCLLIFVNGKI 208
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 105/181 (58%), Gaps = 4/181 (2%)
Query: 29 GGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 88
G+ + T N V T+ + LDL IN+R R SEYNP +FHGLIM++ +PRTT L FQ
Sbjct: 54 AGEPHTNITIQNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLIMRLRDPRTTALIFQ 113
Query: 89 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQIN 146
+GK++ GAK E D LAS+KFA+I+++LG +I F F +N+V T + P+ L ++
Sbjct: 114 TGKIVCTGAKSEQDALLASKKFARIIQKLGF-DIKFDNFKIQNLVATCDLRFPIKLESLS 172
Query: 147 -SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
++ Y P F G+I +++ P L F +GK++ G+K K + IL+
Sbjct: 173 LLHGQFCSYEPELFPGIIYRMIKPHLCLLIFVNGKIVFTGSKSREGIKESLDNIYPILRS 232
Query: 206 L 206
Sbjct: 233 F 233
>gi|357612499|gb|EHJ68033.1| putative TATA binding protein [Danaus plexippus]
Length = 283
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 115/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
F+N + T+S+ C L+L I R R+SEYNP +F+G++MKIL PR T L F+SGK++ GA
Sbjct: 110 FQNCISTVSLDCELNLLDIYCRTRFSEYNPARFNGVVMKILEPRATALVFRSGKIVCTGA 169
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K+ HD +A+RKFA+I+++LG P+K+ FK+ N + T D+RFP+KL+AL H QF+SYE
Sbjct: 170 KNGHDSYIAARKFARIIQKLGFPVKFVDFKVLNFLATADLRFPIKLEALQQAHGQFTSYE 229
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELF GL+YRM++PRVVLLIFVNG++
Sbjct: 230 PELFSGLVYRMIRPRVVLLIFVNGKM 255
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N + T+S+ C L+L I R R+SEYNP +F+G++MKIL PR T L F+SGK++ GAK+
Sbjct: 112 NCISTVSLDCELNLLDIYCRTRFSEYNPARFNGVVMKILEPRATALVFRSGKIVCTGAKN 171
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
HD +A+RKFA+I+++LG P + + F N + T + P+ L + + +++ Y P
Sbjct: 172 GHDSYIAARKFARIIQKLGFPVKFVDFKVLNFLATADLRFPIKLEALQQAHGQFTSYEPE 231
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GL+ +++ PR L F +GK++I GAK + A IL+
Sbjct: 232 LFSGLVYRMIRPRVVLLIFVNGKMVITGAKTNQEVYEAVDIIHPILR 278
>gi|195035545|ref|XP_001989238.1| GH11614 [Drosophila grimshawi]
gi|193905238|gb|EDW04105.1| GH11614 [Drosophila grimshawi]
Length = 220
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 115/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA
Sbjct: 47 LQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 106
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYE
Sbjct: 107 RNEIEANMGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYE 166
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLIYRMVKPR+VLLIFVNG++
Sbjct: 167 PEMFPGLIYRMVKPRLVLLIFVNGKV 192
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA++
Sbjct: 49 NIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGARN 108
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + + SRKFA+IL++LG P + + + +N+V T+ + P+ L +N ++S Y P
Sbjct: 109 EIEANMGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEPE 168
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ PR L F +GK++ GAK D
Sbjct: 169 MFPGLIYRMVKPRLVLLIFVNGKVVFTGAKSRKD 202
>gi|242014208|ref|XP_002427783.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512252|gb|EEB15045.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 231
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 115/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ LDL +IN R +EYNP +F GL+M+I P+TT L F+SGK+++ GA
Sbjct: 58 LQNVVATVNLMNELDLRKINFCTRNTEYNPSRFKGLVMRIREPKTTALIFRSGKIVVTGA 117
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E LA+RK+A+I+++LG IK+ FKI NIV TCDVRFP+KL++L+ +H QFSSYE
Sbjct: 118 KSEDAALLAARKYARIIQKLGFSIKFCSFKIQNIVGTCDVRFPIKLESLNQIHGQFSSYE 177
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFP LIYR+VKPRVVLLIFVNG+I
Sbjct: 178 PELFPALIYRLVKPRVVLLIFVNGKI 203
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 104/168 (61%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL +IN R +EYNP +F GL+M+I P+TT L F+SGK+++ GAK
Sbjct: 60 NVVATVNLMNELDLRKINFCTRNTEYNPSRFKGLVMRIREPKTTALIFRSGKIVVTGAKS 119
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINS-RVRYSEYNP 156
E LA+RK+A+I+++LG I F F +N+VGT V P+ L +N ++S Y P
Sbjct: 120 EDAALLAARKYARIIQKLGF-SIKFCSFKIQNIVGTCDVRFPIKLESLNQIHGQFSSYEP 178
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F LI +++ PR L F +GK+++ GA+ + D + A ILK
Sbjct: 179 ELFPALIYRLVKPRVVLLIFVNGKIVLTGARTQQDIQEALDIMLPILK 226
>gi|225719098|gb|ACO15395.1| TATA-box-binding protein [Caligus clemensi]
Length = 323
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 115/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+S+GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 150 LQNIVSTVSLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P +++ FKI N+V +CDV+FP++L+ L HSQFSSYE
Sbjct: 210 KSEEDSRLAARKYARIVQKLGFPARFKDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYE 269
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 270 PELFPGLIYRMVRPRIVLLIFVSGKV 295
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+S+GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 152 NIVSTVSLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 211
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P F +NMVG+ V P+ L + + ++S Y P
Sbjct: 212 EEDSRLAARKYARIVQKLGFPARFKDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPE 271
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 272 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 318
>gi|156392660|ref|XP_001636166.1| predicted protein [Nematostella vectensis]
gi|156223266|gb|EDO44103.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 116/155 (74%)
Query: 118 GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 177
G P I +N+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F
Sbjct: 12 GEPSGILPQLQNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFS 71
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SGK++ GAK E KLA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L
Sbjct: 72 SGKMVCTGAKSEEQSKLAARKYARVVQKLGFPAKFTEFKIQNMVGSCDVKFPIRLEGLVL 131
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H QFSSYEPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 132 AHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 166
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 23 NIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 82
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E KLA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 83 EEQSKLAARKYARVVQKLGFPAKFTEFKIQNMVGSCDVKFPIRLEGLVLAHGQFSSYEPE 142
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 143 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 189
>gi|307206120|gb|EFN84200.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 241
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 116/152 (76%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E++ +N+V TI + L L IN R R SEYNP +F GL+M+I NPR T L F+SGK
Sbjct: 62 EVLEPCLQNVVSTIDLQTELKLMYINVRTRNSEYNPARFTGLVMRIQNPRATALIFRSGK 121
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
L+ GA+ E + LA++KFA+I+++LG P+++ F + NIV TCD++FP+KL++L+ +H
Sbjct: 122 LVCTGARSEDESLLAAKKFARIIQKLGFPVRFTSFTVQNIVATCDLKFPIKLESLNQMHG 181
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPEL+PGL YRM+KPRVVLLIFVNG++
Sbjct: 182 QFSSYEPELYPGLTYRMLKPRVVLLIFVNGKV 213
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V TI + L L IN R R SEYNP +F GL+M+I NPR T L F+SGKL+ GA+
Sbjct: 70 NVVSTIDLQTELKLMYINVRTRNSEYNPARFTGLVMRIQNPRATALIFRSGKLVCTGARS 129
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E + LA++KFA+I+++LG P F +N+V T + P+ L +N ++S Y P
Sbjct: 130 EDESLLAAKKFARIIQKLGFPVRFTSFTVQNIVATCDLKFPIKLESLNQMHGQFSSYEPE 189
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
+ GL ++L PR L F +GK++I GAK D A ILK
Sbjct: 190 LYPGLTYRMLKPRVVLLIFVNGKVVITGAKKREDLHEALYHIYPILK 236
>gi|153792245|ref|NP_001093264.1| TATA box binding protein [Takifugu rubripes]
gi|148910855|tpg|DAA06038.1| TPA_inf: TATA box binding protein [Takifugu rubripes]
Length = 301
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 127 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 186
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 187 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 246
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 247 PELFPGLIYRMIKPRIVLLIFVSGKV 272
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 129 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 188
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 189 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 248
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 249 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 295
>gi|302693080|ref|XP_003036219.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
gi|300109915|gb|EFJ01317.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
Length = 286
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 113 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 172
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H QFSSYE
Sbjct: 173 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGQFSSYE 232
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 233 PELFPGLIYRMIKPKVVLLIFVSGKI 258
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 115 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 174
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 175 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGQFSSYEPE 234
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 235 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 286
>gi|340371811|ref|XP_003384438.1| PREDICTED: TATA-box-binding protein-like [Amphimedon queenslandica]
Length = 291
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 114/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I +PRTT L F SGK++ GA
Sbjct: 117 LQNIVSTVTLGCKLDLKDIALRARNAEYNPKRFAAVIMRIRDPRTTALVFSSGKMVCTGA 176
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HSQFSSYE
Sbjct: 177 KSEDFSRLAARKYARIIQKLGFPAKFLEFKIQNMVGSCDVKFPIRLEGLVVAHSQFSSYE 236
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 237 PELFPGLIYRMVRPRIVLLIFVSGKV 262
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I +PRTT L F SGK++ GAK
Sbjct: 119 NIVSTVTLGCKLDLKDIALRARNAEYNPKRFAAVIMRIRDPRTTALVFSSGKMVCTGAKS 178
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 179 EDFSRLAARKYARIIQKLGFPAKFLEFKIQNMVGSCDVKFPIRLEGLVVAHSQFSSYEPE 238
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK A ILK
Sbjct: 239 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKERSQIIEAFNNIYPILK 285
>gi|207345821|gb|EDZ72518.1| YER148Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 240
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPSRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPSRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|327262117|ref|XP_003215872.1| PREDICTED: TATA-box-binding protein-like [Anolis carolinensis]
Length = 300
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 126 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 185
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 186 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 245
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 246 PELFPGLIYRMIKPRIVLLIFVSGKV 271
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 128 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 187
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 188 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 247
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 248 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 294
>gi|3122948|sp|Q92146.1|TBP_TRIGA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|808897|dbj|BAA06554.1| TATA-box binding protein [Trimeresurus gramineus]
gi|1483197|dbj|BAA06560.1| TATA-box binding protein [Trimeresurus gramineus]
Length = 302
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKV 273
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 130 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 190 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 296
>gi|348168341|gb|AEP68421.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168347|gb|AEP68424.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|3122947|sp|Q92117.1|TBP_TRIFL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|1483195|dbj|BAA06555.1| TATA-box binding protein [Trimeresurus flavoviridis]
Length = 300
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 126 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 185
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 186 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 245
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 246 PELFPGLIYRMIKPRIVLLIFVSGKV 271
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 128 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 187
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 188 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 247
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 248 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 294
>gi|148688513|gb|EDL20460.1| TATA box binding protein, isoform CRA_b [Mus musculus]
Length = 323
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 149 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 208
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 209 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 268
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 269 PELFPGLIYRMIKPRIVLLIFVSGKV 294
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 151 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 210
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 211 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 270
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 271 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 317
>gi|402868789|ref|XP_003898470.1| PREDICTED: TATA-box-binding protein isoform 2 [Papio anubis]
Length = 325
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 151 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 210
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 211 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 270
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 271 PELFPGLIYRMIKPRIVLLIFVSGKV 296
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 153 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 212
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 213 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 272
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 273 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 319
>gi|51948368|ref|NP_001004198.1| TATA-box-binding protein [Rattus norvegicus]
gi|51858685|gb|AAH81939.1| TATA box binding protein [Rattus norvegicus]
gi|149047096|gb|EDL99816.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
gi|149047097|gb|EDL99817.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
Length = 318
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 144 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 203
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 204 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 263
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 264 PELFPGLIYRMIKPRIVLLIFVSGKV 289
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 146 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 205
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 206 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 265
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 266 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 312
>gi|44967798|gb|AAS49578.1| TATA box binding protein (TBP)-associated factor [Protopterus
dolloi]
Length = 250
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 93 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 152
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 153 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 212
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 213 PELFPGLIYRMIKPRIVLLIFVSGKV 238
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 95 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 154
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 155 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 214
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ PR L F SGK+++ GAK
Sbjct: 215 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 244
>gi|2052377|gb|AAB53097.1| transcription factor IID [Mus musculus domesticus]
Length = 318
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 144 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 203
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 204 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 263
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 264 PELFPGLIYRMIKPRIVLLIFVSGKV 289
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 146 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 205
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 206 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 265
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 266 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 312
>gi|172073171|ref|NP_038712.3| TATA-box-binding protein [Mus musculus]
gi|135638|sp|P29037.1|TBP_MOUSE RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|220612|dbj|BAA00840.1| TFIID [Mus musculus]
gi|15215158|gb|AAH12685.1| Tbp protein [Mus musculus]
gi|39754750|gb|AAR30866.1| TATA-binding protein [Mus musculus]
gi|148688512|gb|EDL20459.1| TATA box binding protein, isoform CRA_a [Mus musculus]
gi|148688514|gb|EDL20461.1| TATA box binding protein, isoform CRA_a [Mus musculus]
Length = 316
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 202 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 261
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 262 PELFPGLIYRMIKPRIVLLIFVSGKV 287
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 144 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 203
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 204 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 263
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 264 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 310
>gi|402868787|ref|XP_003898469.1| PREDICTED: TATA-box-binding protein isoform 1 [Papio anubis]
Length = 335
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 161 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 220
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 221 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 280
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 281 PELFPGLIYRMIKPRIVLLIFVSGKV 306
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 163 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 222
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 223 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 282
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 283 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 329
>gi|29477183|gb|AAH50136.1| Tbp protein [Mus musculus]
Length = 316
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 202 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 261
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 262 PELFPGLIYRMIKPRIVLLIFVSGKV 287
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 144 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 203
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 204 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 263
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 264 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 310
>gi|410076168|ref|XP_003955666.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
gi|372462249|emb|CCF56531.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
Length = 230
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 121/175 (69%), Gaps = 3/175 (1%)
Query: 98 KHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
K E D K+ K I ++ I +N+V T+++GC LDL + R +EYNP
Sbjct: 31 KQEEDMKM---KEEPIEEEGSSTSGIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPK 87
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
+F +IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I++++G K+ FKI
Sbjct: 88 RFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKI 147
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
NIV +CDV+FP++L+ L H FSSYEPELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 148 QNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKI 202
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 59 NIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 118
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 119 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 178
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 179 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 227
>gi|1729911|sp|P53360.1|TBP_MESAU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|493654|dbj|BAA06287.1| TBP [Mesocricetus auratus]
Length = 318
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 144 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 203
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 204 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 263
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 264 PELFPGLIYRMIKPRIVLLIFVSGKV 289
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 146 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 205
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 206 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 265
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 266 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 312
>gi|398364911|ref|NP_011075.3| Spt15p [Saccharomyces cerevisiae S288c]
gi|135643|sp|P13393.3|TBP_YEAST RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription factor D; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|73535263|pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
gi|4610|emb|CAA34751.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171132|gb|AAA34458.1| TATA box factor [Saccharomyces cerevisiae]
gi|172901|gb|AAA35147.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|603388|gb|AAB64675.1| Spt15p: TATA-box binding protein tfIId [Saccharomyces cerevisiae]
gi|151944866|gb|EDN63125.1| TBP [Saccharomyces cerevisiae YJM789]
gi|190405707|gb|EDV08974.1| TATA-box binding protein [Saccharomyces cerevisiae RM11-1a]
gi|256272072|gb|EEU07084.1| Spt15p [Saccharomyces cerevisiae JAY291]
gi|259146076|emb|CAY79336.1| Spt15p [Saccharomyces cerevisiae EC1118]
gi|285811781|tpg|DAA07809.1| TPA: Spt15p [Saccharomyces cerevisiae S288c]
gi|323309314|gb|EGA62532.1| Spt15p [Saccharomyces cerevisiae FostersO]
gi|323333807|gb|EGA75198.1| Spt15p [Saccharomyces cerevisiae AWRI796]
gi|323337848|gb|EGA79088.1| Spt15p [Saccharomyces cerevisiae Vin13]
gi|323348846|gb|EGA83084.1| Spt15p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355333|gb|EGA87158.1| Spt15p [Saccharomyces cerevisiae VL3]
gi|348168207|gb|AEP68354.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168209|gb|AEP68355.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168211|gb|AEP68356.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168213|gb|AEP68357.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168215|gb|AEP68358.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168217|gb|AEP68359.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168219|gb|AEP68360.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168221|gb|AEP68361.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168223|gb|AEP68362.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168225|gb|AEP68363.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168227|gb|AEP68364.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168229|gb|AEP68365.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168235|gb|AEP68368.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168237|gb|AEP68369.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168239|gb|AEP68370.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168241|gb|AEP68371.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168243|gb|AEP68372.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168245|gb|AEP68373.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168247|gb|AEP68374.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168249|gb|AEP68375.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168251|gb|AEP68376.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168253|gb|AEP68377.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168255|gb|AEP68378.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168257|gb|AEP68379.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168259|gb|AEP68380.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168261|gb|AEP68381.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168263|gb|AEP68382.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168265|gb|AEP68383.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168267|gb|AEP68384.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168269|gb|AEP68385.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168271|gb|AEP68386.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168273|gb|AEP68387.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168275|gb|AEP68388.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168277|gb|AEP68389.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168279|gb|AEP68390.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168281|gb|AEP68391.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168283|gb|AEP68392.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168285|gb|AEP68393.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168287|gb|AEP68394.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168289|gb|AEP68395.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168291|gb|AEP68396.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168293|gb|AEP68397.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168295|gb|AEP68398.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168297|gb|AEP68399.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168299|gb|AEP68400.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168301|gb|AEP68401.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168303|gb|AEP68402.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168305|gb|AEP68403.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168307|gb|AEP68404.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168309|gb|AEP68405.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168311|gb|AEP68406.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168313|gb|AEP68407.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168315|gb|AEP68408.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168317|gb|AEP68409.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168319|gb|AEP68410.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168321|gb|AEP68411.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168323|gb|AEP68412.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168325|gb|AEP68413.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168327|gb|AEP68414.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168329|gb|AEP68415.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168331|gb|AEP68416.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168333|gb|AEP68417.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168335|gb|AEP68418.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168337|gb|AEP68419.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168339|gb|AEP68420.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168343|gb|AEP68422.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168345|gb|AEP68423.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168349|gb|AEP68425.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168351|gb|AEP68426.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168353|gb|AEP68427.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168355|gb|AEP68428.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168357|gb|AEP68429.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168361|gb|AEP68431.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168363|gb|AEP68432.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168365|gb|AEP68433.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168367|gb|AEP68434.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168369|gb|AEP68435.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168371|gb|AEP68436.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|349577810|dbj|GAA22978.1| K7_Spt15p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765929|gb|EHN07432.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299852|gb|EIW10944.1| Spt15p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|226502|prf||1515352A transcription initiation factor TFIID
Length = 240
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|384500347|gb|EIE90838.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 248
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
FRN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 75 FRNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 134
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 135 KSEDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYE 194
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 195 PELFPGLIYRMVKPKIVLLIFVSGKI 220
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 77 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 136
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLA+RK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 137 EDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPE 196
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A + +L + P
Sbjct: 197 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFQAIYPVLTEFRKP 248
>gi|348168359|gb|AEP68430.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|172899|gb|AAA35146.1| tata-box factor protein [Saccharomyces cerevisiae]
Length = 240
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|354486300|ref|XP_003505319.1| PREDICTED: TATA-box-binding protein-like [Cricetulus griseus]
gi|344249386|gb|EGW05490.1| TATA-box-binding protein [Cricetulus griseus]
Length = 315
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 141 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 200
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 201 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 260
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 261 PELFPGLIYRMIKPRIVLLIFVSGKV 286
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 143 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 202
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 203 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 262
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 263 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 309
>gi|426235063|ref|XP_004011510.1| PREDICTED: TATA-box-binding protein isoform 3 [Ovis aries]
Length = 288
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 114 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 173
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 174 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 233
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 234 PELFPGLIYRMIKPRIVLLIFVSGKV 259
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 116 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 175
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 176 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 235
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 236 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 282
>gi|432114953|gb|ELK36596.1| TATA-box-binding protein [Myotis davidii]
Length = 316
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 202 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 261
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 262 PELFPGLIYRMIKPRIVLLIFVSGKV 287
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 144 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 203
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 204 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 263
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 264 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 310
>gi|80474966|gb|AAI09055.1| TBP protein [Homo sapiens]
gi|190691993|gb|ACE87771.1| TATA box binding protein protein [synthetic construct]
gi|254071353|gb|ACT64436.1| TATA box binding protein protein [synthetic construct]
Length = 288
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 114 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 173
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 174 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 233
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 234 PELFPGLIYRMIKPRIVLLIFVSGKV 259
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 116 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 175
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 176 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 235
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 236 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 282
>gi|355723497|gb|AES07910.1| TATA-box binding protein [Mustela putorius furo]
Length = 315
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 202 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 261
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 262 PELFPGLIYRMIKPRIVLLIFVSGKV 287
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 144 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 203
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 204 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 263
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 264 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 310
>gi|366987133|ref|XP_003673333.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
gi|342299196|emb|CCC66945.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
Length = 252
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 79 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 138
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 139 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 198
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 199 PELFPGLIYRMVKPKIVLLIFVSGKI 224
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 NIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 140
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 141 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 200
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 201 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 249
>gi|348168231|gb|AEP68366.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168233|gb|AEP68367.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|157265563|ref|NP_001098077.1| TATA-box-binding protein [Pan troglodytes]
gi|148910853|tpg|DAA06037.1| TPA_inf: TATA box binding protein [Pan troglodytes]
Length = 336
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 162 LQNIVSTVNLGCKLDLKTIALRARNAEYNPTRFAAVIMRIREPRTTALIFSSGKMVCTGA 221
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 222 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 281
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 282 PELFPGLIYRMIKPRIVLLIFVSGKV 307
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 164 NIVSTVNLGCKLDLKTIALRARNAEYNPTRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 223
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 224 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 283
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 284 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 330
>gi|224047784|ref|XP_002190631.1| PREDICTED: TATA-box-binding protein [Taeniopygia guttata]
Length = 302
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKV 273
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 130 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 190 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 296
>gi|395839043|ref|XP_003792412.1| PREDICTED: TATA-box-binding protein [Otolemur garnettii]
Length = 326
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 152 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 211
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 212 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 271
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 272 PELFPGLIYRMIKPRIVLLIFVSGKV 297
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 154 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 213
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 214 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 273
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 274 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 320
>gi|126310795|ref|XP_001371815.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Monodelphis
domestica]
Length = 308
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 134 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 194 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 253
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 254 PELFPGLIYRMIKPRIVLLIFVSGKV 279
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 136 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 195
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 196 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 255
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 256 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 302
>gi|355562211|gb|EHH18843.1| hypothetical protein EGK_15529 [Macaca mulatta]
Length = 326
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 152 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 211
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 212 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 271
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 272 PELFPGLIYRMIKPRIVLLIFVSGKV 297
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 154 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 213
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 214 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 273
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 274 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 320
>gi|348561403|ref|XP_003466502.1| PREDICTED: TATA-box-binding protein-like [Cavia porcellus]
Length = 321
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 147 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 206
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 207 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 266
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 267 PELFPGLIYRMIKPRIVLLIFVSGKV 292
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 149 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 208
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 209 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 268
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 269 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 315
>gi|348534076|ref|XP_003454529.1| PREDICTED: TATA-box-binding protein-like [Oreochromis niloticus]
Length = 333
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 159 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 218
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 219 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 278
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 279 PELFPGLIYRMIKPRIVLLIFVSGKV 304
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 161 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 220
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 221 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 280
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 281 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 327
>gi|345309405|ref|XP_003428833.1| PREDICTED: LOW QUALITY PROTEIN: TATA-box-binding protein-like
[Ornithorhynchus anatinus]
Length = 308
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 134 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 194 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 253
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 254 PELFPGLIYRMIKPRIVLLIFVSGKV 279
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 136 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 195
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 196 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 255
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A + ILK
Sbjct: 256 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFQNIYPILK 302
>gi|291190590|ref|NP_001167145.1| TATA-box-binding protein [Salmo salar]
gi|223648344|gb|ACN10930.1| TATA-box-binding protein [Salmo salar]
Length = 299
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 125 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 184
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 185 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 244
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 245 PELFPGLIYRMIKPRIVLLIFVSGKV 270
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 127 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 186
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 187 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 246
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 247 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 293
>gi|41056135|ref|NP_956390.1| TATA-box-binding protein [Danio rerio]
gi|82187626|sp|Q7SXL3.1|TBP_DANRE RecName: Full=TATA-box-binding protein; Short=zTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
Short=zfTBF; AltName: Full=Transcription initiation
factor TFIID TBP subunit
gi|33416871|gb|AAH55549.1| TATA box binding protein [Danio rerio]
gi|37727187|gb|AAO34524.1| TATA-binding protein [Danio rerio]
gi|41351472|gb|AAH65860.1| TATA box binding protein [Danio rerio]
Length = 302
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKV 273
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 130 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 190 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 296
>gi|45384144|ref|NP_990434.1| TATA-box-binding protein [Gallus gallus]
gi|3122919|sp|O13270.1|TBP_CHICK RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|2145309|dbj|BAA20296.1| TBP0 [Gallus gallus]
gi|2145310|dbj|BAA20297.1| TBP1 [Gallus gallus]
gi|2145320|dbj|BAA20298.1| TBP [Gallus gallus]
Length = 302
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKV 273
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 130 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 190 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 296
>gi|326915583|ref|XP_003204094.1| PREDICTED: TATA-box-binding protein-like [Meleagris gallopavo]
Length = 303
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 129 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 188
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 189 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 248
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 249 PELFPGLIYRMIKPRIVLLIFVSGKV 274
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 131 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 190
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 191 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 250
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 251 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 297
>gi|281351746|gb|EFB27330.1| hypothetical protein PANDA_014728 [Ailuropoda melanoleuca]
Length = 308
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 134 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 194 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 253
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 254 PELFPGLIYRMIKPRIVLLIFVSGKV 279
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 136 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 195
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 196 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 255
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 256 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 302
>gi|38680348|gb|AAR26545.1| TATA-binding protein [Gallus gallus]
Length = 302
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKV 273
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 130 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 190 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 296
>gi|344306713|ref|XP_003422029.1| PREDICTED: TATA-box-binding protein-like [Loxodonta africana]
Length = 324
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 150 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 210 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 269
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 270 PELFPGLIYRMIKPRIVLLIFVSGKV 295
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 152 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 211
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 212 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 271
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 272 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 318
>gi|1582692|prf||2119243A TATA box-binding protein
Length = 338
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 164 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 223
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 224 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 283
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 284 PELFPGLIYRMIKPRIVLLIFVSGKV 309
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 166 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 225
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 226 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 285
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 286 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 332
>gi|301779702|ref|XP_002925261.1| PREDICTED: TATA-box-binding protein-like [Ailuropoda melanoleuca]
Length = 324
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 150 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 210 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 269
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 270 PELFPGLIYRMIKPRIVLLIFVSGKV 295
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 152 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 211
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 212 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 271
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 272 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 318
>gi|297679683|ref|XP_002817654.1| PREDICTED: TATA-box-binding protein [Pongo abelii]
Length = 327
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 153 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 212
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 213 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 272
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 273 PELFPGLIYRMIKPRIVLLIFVSGKV 298
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 155 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 214
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 215 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 274
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 275 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 321
>gi|73973822|ref|XP_854525.1| PREDICTED: TATA-box-binding protein isoform 1 [Canis lupus
familiaris]
Length = 324
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 150 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 210 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 269
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 270 PELFPGLIYRMIKPRIVLLIFVSGKV 295
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 152 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 211
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 212 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 271
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 272 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 318
>gi|109073359|ref|XP_001085368.1| PREDICTED: TATA-box-binding protein isoform 3 [Macaca mulatta]
gi|75075688|sp|Q4R4F5.1|TBP_MACFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|67968013|dbj|BAE00488.1| unnamed protein product [Macaca fascicularis]
gi|67971336|dbj|BAE02010.1| unnamed protein product [Macaca fascicularis]
gi|355749048|gb|EHH53531.1| hypothetical protein EGM_14191 [Macaca fascicularis]
Length = 326
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 152 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 211
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 212 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 271
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 272 PELFPGLIYRMIKPRIVLLIFVSGKV 297
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 154 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 213
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 214 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 273
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 274 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 320
>gi|432852539|ref|XP_004067298.1| PREDICTED: TATA-box-binding protein [Oryzias latipes]
Length = 305
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 131 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 190
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 191 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 250
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 251 PELFPGLIYRMIKPRIVLLIFVSGKV 276
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 133 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 192
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 193 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 252
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 253 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 299
>gi|426355239|ref|XP_004045036.1| PREDICTED: TATA-box-binding protein isoform 2 [Gorilla gorilla
gorilla]
Length = 311
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 137 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 196
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 197 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 256
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 257 PELFPGLIYRMIKPRIVLLIFVSGKV 282
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 139 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 198
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 199 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 258
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 259 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 305
>gi|1942827|pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 7 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 67 KSEENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 126
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 127 PELFPGLIYRMIKPRIVLLIFVSGKV 152
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 9 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 68
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E + +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 69 EENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 128
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 129 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 175
>gi|397502106|ref|XP_003821709.1| PREDICTED: TATA-box-binding protein isoform 2 [Pan paniscus]
Length = 312
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 138 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 197
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 198 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 257
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 258 PELFPGLIYRMIKPRIVLLIFVSGKV 283
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 140 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 199
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 200 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 259
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 260 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 306
>gi|285026520|ref|NP_001165556.1| TATA-box-binding protein isoform 2 [Homo sapiens]
Length = 319
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 145 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 204
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 205 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 264
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 265 PELFPGLIYRMIKPRIVLLIFVSGKV 290
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 147 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 206
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 207 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 266
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 267 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 313
>gi|54696180|gb|AAV38462.1| TATA box binding protein [synthetic construct]
Length = 337
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 162 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 221
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 222 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 281
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 282 PELFPGLIYRMIKPRIVLLIFVSGKV 307
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 164 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 223
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 224 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 283
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 284 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 330
>gi|426355237|ref|XP_004045035.1| PREDICTED: TATA-box-binding protein isoform 1 [Gorilla gorilla
gorilla]
Length = 331
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 157 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 216
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 217 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 276
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 277 PELFPGLIYRMIKPRIVLLIFVSGKV 302
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 159 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 218
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 219 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 278
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 279 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 325
>gi|80478871|gb|AAI09054.1| TATA box binding protein [Homo sapiens]
gi|82571689|gb|AAI10342.1| TATA box binding protein [Homo sapiens]
gi|119567803|gb|EAW47418.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|119567804|gb|EAW47419.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|190689691|gb|ACE86620.1| TATA box binding protein protein [synthetic construct]
gi|190691053|gb|ACE87301.1| TATA box binding protein protein [synthetic construct]
Length = 338
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 164 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 223
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 224 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 283
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 284 PELFPGLIYRMIKPRIVLLIFVSGKV 309
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 166 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 225
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 226 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 285
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 286 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 332
>gi|37066|emb|CAA38736.1| TFIID [Homo sapiens]
gi|227072|prf||1613451A TATA binding factor TFIID
Length = 335
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 161 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 220
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 221 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 280
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 281 PELFPGLIYRMIKPRIVLLIFVSGKV 306
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 163 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 222
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 223 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 282
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 283 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 329
>gi|4507379|ref|NP_003185.1| TATA-box-binding protein isoform 1 [Homo sapiens]
gi|1351223|sp|P20226.2|TBP_HUMAN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|339492|gb|AAA36731.1| TATA-box binding protein [Homo sapiens]
gi|48145669|emb|CAG33057.1| TBP [Homo sapiens]
Length = 339
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 165 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 224
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 225 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 284
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 285 PELFPGLIYRMIKPRIVLLIFVSGKV 310
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 167 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 226
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 227 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 286
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 287 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 333
>gi|397502104|ref|XP_003821708.1| PREDICTED: TATA-box-binding protein isoform 1 [Pan paniscus]
Length = 332
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 158 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 217
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 218 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 277
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 278 PELFPGLIYRMIKPRIVLLIFVSGKV 303
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 160 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 219
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 220 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 279
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 280 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 326
>gi|332264009|ref|XP_003281041.1| PREDICTED: TATA-box-binding protein [Nomascus leucogenys]
Length = 328
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 154 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 213
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 214 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 273
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 274 PELFPGLIYRMIKPRIVLLIFVSGKV 299
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 156 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 215
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 216 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 275
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 276 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 322
>gi|296199650|ref|XP_002747248.1| PREDICTED: TATA-box-binding protein [Callithrix jacchus]
Length = 333
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 159 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 218
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 219 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 278
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 279 PELFPGLIYRMIKPRIVLLIFVSGKV 304
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 161 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 220
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 221 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 280
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 281 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 327
>gi|194390034|dbj|BAG60533.1| unnamed protein product [Homo sapiens]
Length = 316
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 202 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 261
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 262 PELFPGLIYRMIKPRIVLLIFVSGKV 287
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 144 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 203
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 204 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 263
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 264 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 310
>gi|149743967|ref|XP_001499379.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Equus caballus]
Length = 329
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 155 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 214
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 215 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 274
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 275 PELFPGLIYRMIKPRIVLLIFVSGKV 300
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 157 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 216
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 217 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 276
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 277 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 323
>gi|17298076|dbj|BAB78512.1| TATA-box binding protein [Oryzias latipes]
Length = 320
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 146 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 206 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 265
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 266 PELFPGLIYRMIKPRIVLLIFVSGKV 291
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 148 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 207
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 208 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 267
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 268 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 314
>gi|291414592|ref|XP_002723543.1| PREDICTED: TATA box binding protein [Oryctolagus cuniculus]
Length = 323
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 149 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 208
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 209 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 268
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 269 PELFPGLIYRMIKPRIVLLIFVSGKV 294
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 151 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 210
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 211 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 270
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 271 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 317
>gi|169854094|ref|XP_001833724.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
gi|116505191|gb|EAU88086.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
Length = 308
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 135 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 194
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 195 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 254
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 255 PELFPGLIYRMIKPKVVLLIFVSGKI 280
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 137 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 196
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 197 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 256
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 257 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 308
>gi|156846828|ref|XP_001646300.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
gi|156116975|gb|EDO18442.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
Length = 251
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 78 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 137
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 138 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 197
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 198 PELFPGLIYRMVKPKIVLLIFVSGKI 223
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 80 NIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 139
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 140 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 199
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 200 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 248
>gi|365761010|gb|EHN02687.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842615|gb|EJT44751.1| SPT15-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 240
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|403305888|ref|XP_003943481.1| PREDICTED: TATA-box-binding protein [Saimiri boliviensis
boliviensis]
Length = 326
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 152 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 211
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 212 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 271
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 272 PELFPGLIYRMIKPRIVLLIFVSGKV 297
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 154 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 213
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 214 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 273
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 274 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 320
>gi|401625996|gb|EJS43965.1| spt15p [Saccharomyces arboricola H-6]
Length = 240
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|115496234|ref|NP_001069210.1| TATA-box-binding protein [Bos taurus]
gi|119367391|sp|Q2HJ52.1|TBP_BOVIN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|87578225|gb|AAI13309.1| TATA box binding protein [Bos taurus]
Length = 319
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 145 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 204
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 205 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 264
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 265 PELFPGLIYRMIKPRIVLLIFVSGKV 290
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 147 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 206
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 207 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 266
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 267 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 313
>gi|440894479|gb|ELR46921.1| TATA-box-binding protein [Bos grunniens mutus]
Length = 312
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 138 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 197
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 198 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 257
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 258 PELFPGLIYRMIKPRIVLLIFVSGKV 283
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 140 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 199
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 200 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 259
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 260 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 306
>gi|426235061|ref|XP_004011509.1| PREDICTED: TATA-box-binding protein isoform 2 [Ovis aries]
Length = 306
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 132 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 191
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 192 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 251
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 252 PELFPGLIYRMIKPRIVLLIFVSGKV 277
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 134 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 193
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 194 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 253
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 254 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 300
>gi|426235059|ref|XP_004011508.1| PREDICTED: TATA-box-binding protein isoform 1 [Ovis aries]
Length = 314
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 140 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 199
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 200 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 259
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 260 PELFPGLIYRMIKPRIVLLIFVSGKV 285
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 142 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 201
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 202 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 261
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 262 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 308
>gi|1827869|pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX
Length = 185
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 11 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 71 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 130
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 131 PELFPGLIYRMIKPRIVLLIFVSGKV 156
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 13 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 73 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 132
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 133 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 179
>gi|26351419|dbj|BAC39346.1| unnamed protein product [Mus musculus]
Length = 316
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRPRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 202 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 261
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 262 PELFPGLIYRMIKPRIVLLIFVSGKV 287
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 144 NIVSTVNLGCKLDLKTIALRPRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 203
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 204 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 263
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 264 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 310
>gi|444316966|ref|XP_004179140.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
gi|387512180|emb|CCH59621.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
Length = 242
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 69 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 128
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 129 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 188
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 189 PELFPGLIYRMVKPKIVLLIFVSGKI 214
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 71 NIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 130
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 131 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 190
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 191 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 239
>gi|47550887|ref|NP_999961.1| TATA box-binding protein-like protein 2 [Danio rerio]
gi|32765839|gb|AAP87373.1| TATA-binding protein 2 [Danio rerio]
Length = 312
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ CPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 139 LQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 198
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV FP++L+ L H QFSSYE
Sbjct: 199 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQFSSYE 258
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 259 PELFPGLIYRMVKPRIVLLIFVSGKV 284
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ CPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 141 NIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 200
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 201 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQFSSYEPE 260
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 261 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 307
>gi|38492542|pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX
Length = 181
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 7 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 67 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 126
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 127 PELFPGLIYRMIKPRIVLLIFVSGKV 152
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 9 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 68
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 69 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 128
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 129 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 175
>gi|33323635|gb|AAQ07596.1|AF503449_1 TATA-binding protein [Danio rerio]
Length = 302
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVGTGA 187
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKV 273
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 130 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVGTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 190 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 296
>gi|409082748|gb|EKM83106.1| hypothetical protein AGABI1DRAFT_111611 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 306
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 115/152 (75%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E I +N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK
Sbjct: 127 EGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGK 186
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H
Sbjct: 187 MVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHG 246
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 247 QFSSYEPELFPGLIYRMIKPKVVLLIFVSGKI 278
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 135 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 194
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 195 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 254
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 255 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 306
>gi|443925999|gb|ELU44748.1| transcription initiation factor TFIID-1 [Rhizoctonia solani AG-1
IA]
Length = 985
Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats.
Identities = 82/144 (56%), Positives = 112/144 (77%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 73 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 132
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEPE
Sbjct: 133 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 192
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 193 LFPGLIYRMLKPKVVLLIFVSGKI 216
Score = 126 bits (317), Expect = 8e-27, Method: Composition-based stats.
Identities = 65/151 (43%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
LN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 72 LNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 131
Query: 99 HEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 132 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 191
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI ++L P+ L F SGK+++ GAK
Sbjct: 192 ELFPGLIYRMLKPKVVLLIFVSGKIVLTGAK 222
>gi|123909816|sp|Q1JPY4.1|TBPL2_DANRE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|94574475|gb|AAI16554.1| TATA box binding protein like 2 [Danio rerio]
gi|182890344|gb|AAI64097.1| Tbpl2 protein [Danio rerio]
Length = 312
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ CPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 139 LQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 198
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV FP++L+ L H QFSSYE
Sbjct: 199 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQFSSYE 258
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 259 PELFPGLIYRMVKPRIVLLIFVSGKV 284
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ CPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 141 NIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 200
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 201 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQFSSYEPE 260
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 261 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 307
>gi|44969211|gb|AAS49602.1| TATA box-binding protein [Scyliorhinus canicula]
Length = 253
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 92 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 151
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 152 RSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 211
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 212 PELFPGLIYRMIKPRIVLLIFVSGKV 237
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA+
Sbjct: 94 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGARS 153
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 154 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 213
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ PR L F SGK+++ GAK
Sbjct: 214 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 243
>gi|147906485|ref|NP_001089038.1| TATA box binding protein [Xenopus laevis]
gi|57032530|gb|AAH88819.1| LOC503680 protein [Xenopus laevis]
Length = 296
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 122 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 181
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 182 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 241
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 242 PELFPGLIYRMIKPRIVLLIFVSGKV 267
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 124 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 183
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 184 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 243
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 244 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 290
>gi|194388082|dbj|BAG65425.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 144 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 203
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 204 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 263
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 264 PELFPGLIYRMIKPRIVLLIFVSGKV 289
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 146 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 205
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 206 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 265
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 266 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 312
>gi|225435804|ref|XP_002285755.1| PREDICTED: TATA-box-binding protein-like [Vitis vinifera]
Length = 200
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 116/154 (75%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F S
Sbjct: 17 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
EH KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|147900802|ref|NP_001084369.1| TATA-box-binding protein [Xenopus laevis]
gi|135642|sp|P27633.1|TBP_XENLA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|65149|emb|CAA46832.1| transcription factor [Xenopus laevis]
gi|76779674|gb|AAI06645.1| TFIIDtau protein [Xenopus laevis]
Length = 297
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 123 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 182
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 183 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 242
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 243 PELFPGLIYRMIKPRIVLLIFVSGKV 268
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 125 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 184
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 185 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 244
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 245 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 291
>gi|254586113|ref|XP_002498624.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
gi|238941518|emb|CAR29691.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
Length = 239
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 66 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 126 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 185
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 186 PELFPGLIYRMVKPKIVLLIFVSGKI 211
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 NIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 127
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 128 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 187
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 188 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 236
>gi|6980708|pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980710|pdb|1C9B|F Chain F, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980712|pdb|1C9B|J Chain J, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980714|pdb|1C9B|N Chain N, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980716|pdb|1C9B|R Chain R, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 180
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 8 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 68 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 128 PELFPGLIYRMIKPRIVLLIFVSGKV 153
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 10 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 70 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 129
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 130 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 176
>gi|403418333|emb|CCM05033.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 144 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 203
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 204 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 263
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 264 PELFPGLIYRMIKPKVVLLIFVSGKI 289
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 146 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 205
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 206 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 265
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 266 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 317
>gi|323305296|gb|EGA59043.1| Spt15p [Saccharomyces cerevisiae FostersB]
Length = 240
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKXFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGKI 212
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVTLGCRLDLKTVALHARNAEYNPKXFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237
>gi|62858635|ref|NP_001016339.1| TATA-box-binding protein [Xenopus (Silurana) tropicalis]
gi|123907365|sp|Q28GG8.1|TBP_XENTR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|89266978|emb|CAJ83650.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|169642632|gb|AAI60510.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213624491|gb|AAI71176.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213627356|gb|AAI71174.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
Length = 297
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 123 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 182
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 183 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 242
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 243 PELFPGLIYRMIKPRIVLLIFVSGKV 268
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 125 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 184
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 185 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 244
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 245 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 291
>gi|365987133|ref|XP_003670398.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
gi|343769168|emb|CCD25155.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
Length = 264
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 91 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 150
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 151 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 210
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 211 PELFPGLIYRMVKPKIVLLIFVSGKI 236
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 NIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 152
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 153 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 212
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 213 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 261
>gi|332374320|gb|AEE62301.1| unknown [Dendroctonus ponderosae]
Length = 243
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 117/146 (80%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N V T+ + L+L IN++ R +E+NP +FHGLIM+I P+TT L F+SGK++ GA
Sbjct: 70 LQNCVATVDMHTTLNLQLINAKTRNTEFNPQRFHGLIMRIREPKTTALIFRSGKIVCTGA 129
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
++E D +AS+KFA+++++LG IK+ FK+ N+V TCD++FP+KL+ L+H+H QFSSYE
Sbjct: 130 RNEFDALIASKKFARVIQKLGFHIKFANFKVQNLVATCDLKFPIKLENLNHMHGQFSSYE 189
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGL+YRM+KP++VLLIFVNG+I
Sbjct: 190 PELFPGLVYRMIKPKIVLLIFVNGKI 215
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N V T+ + L+L IN++ R +E+NP +FHGLIM+I P+TT L F+SGK++ GA++
Sbjct: 72 NCVATVDMHTTLNLQLINAKTRNTEFNPQRFHGLIMRIREPKTTALIFRSGKIVCTGARN 131
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
E D +AS+KFA+++++LG H + F +N+V T + P+ L +N ++S Y P
Sbjct: 132 EFDALIASKKFARVIQKLGFHIKFANFKVQNLVATCDLKFPIKLENLNHMHGQFSSYEPE 191
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GL+ +++ P+ L F +GK++ G K D K A IL+
Sbjct: 192 LFPGLVYRMIKPKIVLLIFVNGKIVFTGGKSREDIKEALENIHPILRSF 240
>gi|15826400|pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 185
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 11 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 71 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 130
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 131 PELFPGLIYRMIKPRIVLLIFVSGKV 156
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 13 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 73 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 132
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 133 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 179
>gi|149248310|ref|XP_001528542.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
gi|146448496|gb|EDK42884.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
Length = 248
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 75 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 134
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 135 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 194
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 195 PELFPGLIYRMVKPKIVLLIFVSGKI 220
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 77 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 136
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 137 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 196
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 197 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEF 245
>gi|392567667|gb|EIW60842.1| TBP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 308
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 115/152 (75%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E I +N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK
Sbjct: 129 EGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGK 188
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H
Sbjct: 189 MVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHG 248
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 249 QFSSYEPELFPGLIYRMIKPKVVLLIFVSGKI 280
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 137 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 196
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 197 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 256
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 257 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 308
>gi|50290217|ref|XP_447540.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526850|emb|CAG60477.1| unnamed protein product [Candida glabrata]
Length = 233
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 60 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 119
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 120 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 179
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 180 PELFPGLIYRMVKPKIVLLIFVSGKI 205
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 62 NIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 121
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 122 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 181
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 182 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 230
>gi|389749066|gb|EIM90243.1| TBP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 301
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 115/152 (75%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E I +N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK
Sbjct: 122 EGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGK 181
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H
Sbjct: 182 MVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHG 241
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 242 QFSSYEPELFPGLIYRMIKPKVVLLIFVSGKI 273
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 130 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 190 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 250 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLVEFRKP 301
>gi|348539536|ref|XP_003457245.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 146 LQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDV FP++L+ L H QFSSYE
Sbjct: 206 KSEEQSRLAARKYARVVQKLGFPARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYE 265
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKV 291
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 148 NIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 207
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMV + V P+ L + + ++S Y P
Sbjct: 208 EEQSRLAARKYARVVQKLGFPARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYEPE 267
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 268 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILK 314
>gi|74095979|ref|NP_001027845.1| TATA box-binding protein-like protein 2 [Takifugu rubripes]
gi|82127187|sp|Q6SJ94.1|TBPL2_FUGRU RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569213|gb|AAR24283.1| TBP-related factor 3 [Takifugu rubripes]
gi|148910851|tpg|DAA06036.1| TPA_inf: TATA box binding protein-like 2 [Takifugu rubripes]
Length = 322
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 149 LQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 208
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDV FP++L+ L H QFSSYE
Sbjct: 209 KSEEQSRLAARKYARVVQKLGFPARFMDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYE 268
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 269 PELFPGLIYRMVKPRIVLLIFVSGKV 294
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 151 NIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 210
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMV + V P+ L + + ++S Y P
Sbjct: 211 EEQSRLAARKYARVVQKLGFPARFMDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYEPE 270
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A IL+
Sbjct: 271 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILR 317
>gi|224051924|ref|XP_002200431.1| PREDICTED: TATA box-binding protein-like protein 2 [Taeniopygia
guttata]
Length = 322
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 148 LQNIVSTVNLACKLDLKNIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 207
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 208 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 267
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGL+YRMVKPR+VLLIFV+G++
Sbjct: 268 PELFPGLVYRMVKPRIVLLIFVSGKV 293
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 150 NIVSTVNLACKLDLKNIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 209
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 210 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 269
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GL+ +++ PR L F SGK+++ GAK + A IL+ P
Sbjct: 270 LFPGLVYRMVKPRIVLLIFVSGKVVLTGAKDRSEIYEAFENIYPILRGFKKP 321
>gi|409046465|gb|EKM55945.1| hypothetical protein PHACADRAFT_256913 [Phanerochaete carnosa
HHB-10118-sp]
Length = 321
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 115/152 (75%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E I +N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK
Sbjct: 142 EGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGK 201
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H
Sbjct: 202 MVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHG 261
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 262 QFSSYEPELFPGLIYRMIKPKVVLLIFVSGKI 293
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 150 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 209
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 210 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 269
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 270 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 321
>gi|403216725|emb|CCK71221.1| hypothetical protein KNAG_0G01630 [Kazachstania naganishii CBS
8797]
Length = 255
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 82 LQNIVATVNLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 142 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 201
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 202 PELFPGLIYRMVKPKIVLLIFVSGKI 227
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 NIVATVNLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 144 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 204 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 252
>gi|999660|pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|999661|pdb|1YTB|B Chain B, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|1633307|pdb|1YTF|A Chain A, Yeast TfiiaTBPDNA COMPLEX
gi|5822424|pdb|1TBA|B Chain B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
gi|29726664|pdb|1NGM|A Chain A, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726668|pdb|1NGM|E Chain E, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726672|pdb|1NGM|I Chain I, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726676|pdb|1NGM|M Chain M, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|38492530|pdb|1NH2|A Chain A, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 180
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 67 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 126
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 127 PELFPGLIYRMVKPKIVLLIFVSGKI 152
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 9 NIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 68
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 69 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 128
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 129 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177
>gi|353234891|emb|CCA66911.1| probable TATA-box-binding factor TBP [Piriformospora indica DSM
11827]
Length = 297
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 115/152 (75%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E I +N+V T+++G LDL I R +EYNP +F +IM+I P+TT L F SG+
Sbjct: 118 EGIVPILQNIVATVNLGTRLDLKTIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGQ 177
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ LH+ H
Sbjct: 178 MVVTGAKSEDDSRLASRKYARIIQKLGFDAKFTEFKIQNIVGSCDVKFPIRLEGLHYGHG 237
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+FSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 238 KFSSYEPELFPGLIYRMIKPKVVLLIFVSGKI 269
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL I R +EYNP +F +IM+I P+TT L F SG++++ GAK
Sbjct: 126 NIVATVNLGTRLDLKTIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGQMVVTGAKS 185
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L ++ ++S Y P
Sbjct: 186 EDDSRLASRKYARIIQKLGFDAKFTEFKIQNIVGSCDVKFPIRLEGLHYGHGKFSSYEPE 245
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L++ P
Sbjct: 246 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNVIYPVLREFKKP 297
>gi|426200613|gb|EKV50537.1| hypothetical protein AGABI2DRAFT_44722, partial [Agaricus bisporus
var. bisporus H97]
Length = 189
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 16 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 75
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 76 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 135
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 136 PELFPGLIYRMIKPKVVLLIFVSGKI 161
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 18 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 77
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 78 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 137
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 138 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 189
>gi|448513790|ref|XP_003867010.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
gi|380351348|emb|CCG21572.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
Length = 251
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 78 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 137
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 138 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 197
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 198 PELFPGLIYRMVKPKIVLLIFVSGKI 223
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 80 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 139
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 140 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 199
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 200 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEF 248
>gi|297746507|emb|CBI16563.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 116/154 (75%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F S
Sbjct: 17 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
EH KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|336367903|gb|EGN96247.1| hypothetical protein SERLA73DRAFT_76226 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380633|gb|EGO21786.1| hypothetical protein SERLADRAFT_410307 [Serpula lacrymans var.
lacrymans S7.9]
Length = 306
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 115/152 (75%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E I +N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK
Sbjct: 127 EGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGK 186
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H
Sbjct: 187 MVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHG 246
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 247 QFSSYEPELFPGLIYRMIKPKVVLLIFVSGKI 278
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 135 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 194
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 195 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 254
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 255 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 306
>gi|494632|pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
gi|494633|pdb|1TBP|B Chain B, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
Length = 180
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 67 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 126
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 127 PELFPGLIYRMVKPKIVLLIFVSGKI 152
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 9 NIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 68
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 69 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 128
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 129 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177
>gi|449016069|dbj|BAM79471.1| TATA-box binding protein [Cyanidioschyzon merolae strain 10D]
Length = 260
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V ++++ CPLDL I R R +EYNP +F +IM+I +PRTT L F SGK++I GA
Sbjct: 45 LQNVVASVNLLCPLDLRHIAMRARNAEYNPQRFAAVIMRIRDPRTTALIFSSGKVVITGA 104
Query: 187 KHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
+ E D +LA+RK+AKI+++LG+ +K F++HN+V + DVRFP++L+AL H HS ++ Y
Sbjct: 105 RSEEDARLAARKYAKIVRKLGYADVKLADFELHNLVASADVRFPIRLEALAHAHSNYAHY 164
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPELFPGL+YRM++PR+ LLIFV+G++
Sbjct: 165 EPELFPGLVYRMLEPRLALLIFVSGKV 191
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++++ CPLDL I R R +EYNP +F +IM+I +PRTT L F SGK++I GA+
Sbjct: 47 NVVASVNLLCPLDLRHIAMRARNAEYNPQRFAAVIMRIRDPRTTALIFSSGKVVITGARS 106
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
E D +LA+RK+AKI+++LG+ ++ F N+V + V P+ L + ++ Y+ Y P
Sbjct: 107 EEDARLAARKYAKIVRKLGYADVKLADFELHNLVASADVRFPIRLEALAHAHSNYAHYEP 166
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GL+ ++L PR L F SGK++I GAK D A ++ +L Q
Sbjct: 167 ELFPGLVYRMLEPRLALLIFVSGKVVITGAKSRDDLNEAFQRLYPVLCQ 215
>gi|47214810|emb|CAF89637.1| unnamed protein product [Tetraodon nigroviridis]
Length = 309
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 136 LQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 195
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDV FP++L+ L H QFSSYE
Sbjct: 196 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYE 255
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 256 PELFPGLIYRMVKPRIVLLIFVSGKV 281
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 138 NIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 197
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMV + V P+ L + + ++S Y P
Sbjct: 198 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYEPE 257
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A IL+
Sbjct: 258 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILR 304
>gi|321473578|gb|EFX84545.1| hypothetical protein DAPPUDRAFT_194512 [Daphnia pulex]
Length = 312
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 139 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 198
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++L P K+ FKI N+V +CDV+FP++L+ L HSQFSSYE
Sbjct: 199 KSEEDSRLAARKYARIVQKLNFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYE 258
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 259 PELFPGLIYRMVKPRIVLLIFVSGKV 284
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 141 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 200
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++L P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 201 EEDSRLAARKYARIVQKLNFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPE 260
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 261 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILK 307
>gi|2897847|gb|AAC03409.1| transcription factor IID [Homo sapiens]
Length = 339
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 165 LQNIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 224
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 225 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 284
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 285 PELFPGLIYRMIKPRIVLLIFVSGKV 310
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 167 NIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 226
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 227 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 286
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 287 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 333
>gi|164429967|gb|ABY55311.1| TATA-binding protein 1 [Gallus gallus]
Length = 302
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EY+P +F +IM+I PRTT L F SGK++ GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 188 KSEEQSRLAARKYARVVRKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKV 273
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EY+P +F +IM+I PRTT L F SGK++ GAK
Sbjct: 130 NIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 190 EEQSRLAARKYARVVRKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 296
>gi|328768487|gb|EGF78533.1| Tata-Box binding protein ytbp [Batrachochytrium dendrobatidis
JAM81]
Length = 218
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F S
Sbjct: 37 HPSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 96
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK+++ GAK E + KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L +
Sbjct: 97 GKMVVTGAKSEDNSKLASRKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYA 156
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 157 HGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKI 190
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 47 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 106
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E + KLASRK+A+I+++LG + F +N+VG+ V P+ L + + +S Y P
Sbjct: 107 EDNSKLASRKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEPE 166
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 167 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFESIYPVLTEFRKP 218
>gi|344305038|gb|EGW35270.1| hypothetical protein SPAPADRAFT_58486 [Spathaspora passalidarum
NRRL Y-27907]
Length = 246
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 73 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 132
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 133 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 192
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 193 PELFPGLIYRMVKPKIVLLIFVSGKI 218
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 75 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 134
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 135 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 194
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 195 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEF 243
>gi|354546879|emb|CCE43611.1| hypothetical protein CPAR2_212550 [Candida parapsilosis]
Length = 259
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 86 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 145
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 146 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 205
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 206 PELFPGLIYRMVKPKIVLLIFVSGKI 231
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 88 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 147
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 148 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 207
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 208 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEF 256
>gi|269980507|gb|ACZ56425.1| TATA-binding protein [Litopenaeus vannamei]
Length = 300
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 127 LQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 186
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HSQFSSYE
Sbjct: 187 KSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYE 246
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 247 PELFPGLIYRMVKPRIVLLIFVSGKV 272
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 129 NIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 188
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 189 EQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPE 248
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 249 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRNQIYEAFDNIYPILKSF 297
>gi|242084298|ref|XP_002442574.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
gi|241943267|gb|EES16412.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
Length = 200
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
EH KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|19115478|ref|NP_594566.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe 972h-]
gi|135639|sp|P17871.1|TBP_SCHPO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|295936|emb|CAA37494.1| TFIID [Schizosaccharomyces pombe]
gi|1044934|emb|CAA91430.1| transcription initiation factor tfiid [Schizosaccharomyces pombe]
gi|6723895|emb|CAB66471.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe]
gi|226987|prf||1612348A transcription factor IID
Length = 231
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
A +E + A A++ K G I+ +N+V T+++ C LDL I R +EYNP
Sbjct: 29 ANNEATNETADSGDAEVSKNEGVSGIVPTL-QNIVATVNLDCRLDLKTIALHARNAEYNP 87
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFK 216
+F +IM+I P++T L F SGK+++LG K E D KLASRK+A+I+++LG K+ FK
Sbjct: 88 KRFAAVIMRIREPKSTALIFASGKMVVLGGKSEDDSKLASRKYARIIQKLGFNAKFTDFK 147
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
I NIV +CDV+FP++L+ L + H FSSYEPELFPGLIYRMVKP+VVLLIFV+G+I
Sbjct: 148 IQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKVVLLIFVSGKI 203
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P++T L F SGK+++LG K
Sbjct: 60 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASGKMVVLGGKS 119
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 120 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPE 179
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 180 LFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEF 228
>gi|260830471|ref|XP_002610184.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
gi|229295548|gb|EEN66194.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
Length = 320
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 114/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GA
Sbjct: 157 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGA 216
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H+QFSSYE
Sbjct: 217 KSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYE 276
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 277 PELFPGLIYRMVKPRIVLLIFVSGKV 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 99/150 (66%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK
Sbjct: 159 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKS 218
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 219 EDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPE 278
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ PR L F SGK+++ GA+
Sbjct: 279 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAQ 308
>gi|255568956|ref|XP_002525448.1| TATA-box binding protein, putative [Ricinus communis]
gi|223535261|gb|EEF36938.1| TATA-box binding protein, putative [Ricinus communis]
Length = 201
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL QI + R +EYNP +F +IM+I P+TT L F S
Sbjct: 18 HPSGIVPTLQNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 77
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 78 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 137
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 138 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 171
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL QI + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 28 NIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 87
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 88 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 147
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 148 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 196
>gi|417882|sp|Q02879.1|TBP2_WHEAT RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|21877|emb|CAA79268.1| DNA binding protein [Triticum aestivum]
gi|170778|gb|AAA34307.1| DNA-binding protein [Triticum aestivum]
Length = 201
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 18 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 77
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 78 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYS 137
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 138 HGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKI 171
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 28 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 87
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+V + V P+ L + S +S Y P
Sbjct: 88 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPE 147
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 148 LFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYSAFENIYPVLTEF 196
>gi|146415198|ref|XP_001483569.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
gi|146392042|gb|EDK40200.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
Length = 240
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+GRI
Sbjct: 187 PELFPGLIYRMVKPKIVLLIFVSGRI 212
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SG++++ GAK + A +L +
Sbjct: 189 LFPGLIYRMVKPKIVLLIFVSGRIVLTGAKQREEIYDAFEAIYPVLSEF 237
>gi|367010504|ref|XP_003679753.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
gi|359747411|emb|CCE90542.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
Length = 235
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 62 LQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 121
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 122 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 181
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLL+FV+G++
Sbjct: 182 PELFPGLIYRMVKPKIVLLVFVSGKV 207
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 64 NIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 123
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 124 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 183
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 184 LFPGLIYRMVKPKIVLLVFVSGKVVLTGAKQREEIYQAFEAIYPVLSEF 232
>gi|393220621|gb|EJD06107.1| TATA-box binding protein, partial [Fomitiporia mediterranea MF3/22]
Length = 189
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 16 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 75
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 76 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 135
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 136 PELFPGLIYRMIKPKVVLLIFVSGKI 161
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 18 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 77
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 78 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 137
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 138 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFKKP 189
>gi|170093960|ref|XP_001878201.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646655|gb|EDR10900.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 189
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 16 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 75
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 76 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 135
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 136 PELFPGLIYRMIKPKVVLLIFVSGKI 161
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 18 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 77
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 78 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 137
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 138 LFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 189
>gi|540193|gb|AAA79367.1| TATA binding protein [Pneumocystis carinii]
Length = 230
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 56 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 115
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 116 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYE 175
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 176 PELFPGLIYRMVKPKIVLLIFVSGKI 201
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 58 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 117
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 118 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPE 177
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 178 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEF 226
>gi|388580273|gb|EIM20589.1| TBP-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 238
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 124
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 125 KSEDDSKLASRKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYTHGHFSSYE 184
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP+VVLLIFV+G+I
Sbjct: 185 PELFPGLIYRMVKPKVVLLIFVSGKI 210
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 67 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 126
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + F +N+VG+ V P+ L + + +S Y P
Sbjct: 127 EDDSKLASRKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYTHGHFSSYEPE 186
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
F GLI +++ P+ L F SGK+++ GAK + A
Sbjct: 187 LFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYTA 224
>gi|326490497|dbj|BAJ84912.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 200
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKI 170
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+V + V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEF 195
>gi|344228428|gb|EGV60314.1| TBP-domain-containing protein [Candida tenuis ATCC 10573]
Length = 237
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 64 LQNIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 123
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E+D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 124 KSENDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 183
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 184 PELFPGLIYRMVKPKIVLLIFVSGKI 209
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 66 NIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 125
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E+D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 126 ENDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 185
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 186 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEF 234
>gi|540195|gb|AAA79368.1| TATA binding protein [Pneumocystis wakefieldiae]
Length = 229
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 129/197 (65%), Gaps = 7/197 (3%)
Query: 83 TCLAFQSGKLLILGAKH--EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTIS 135
+ L+F S +L+ GA + D K + L Q I +N+V T++
Sbjct: 4 SSLSFPSSHILMSGAMYPGSRDEKGLEHGVSTSLNQTATSAFAGVSGIVPSLQNIVATVN 63
Query: 136 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+ C LDL I + R +EYNP +F +IM+I P+TT L F SGK+++ GAK E D KLA
Sbjct: 64 LDCRLDLKTIALQRRNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLA 123
Query: 196 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIY 255
SRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEPELFPGLIY
Sbjct: 124 SRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIY 183
Query: 256 RMVKPRVVLLIFVNGRI 272
RMVKP++VLLIFV+G+I
Sbjct: 184 RMVKPKIVLLIFVSGKI 200
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 6/207 (2%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVR 61
S K L++G+ ++ + F + G + + N+V T+++ C LDL I + R
Sbjct: 23 SRDEKGLEHGVSTSLNQTATSAFAGVSGIVPSLQ----NIVATVNLDCRLDLKTIALQRR 78
Query: 62 YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HP 120
+EYNP +F +IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG +
Sbjct: 79 NAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNA 138
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
+ F +N+VG+ V P+ L + S +S Y P F GLI +++ P+ L F SG
Sbjct: 139 KFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSG 198
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQL 206
K+++ GAK + A +L +
Sbjct: 199 KIVLTGAKVREEIYQAFEAIYPVLNEF 225
>gi|254566373|ref|XP_002490297.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|238030093|emb|CAY68016.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|328350692|emb|CCA37092.1| TATA-box-binding protein [Komagataella pastoris CBS 7435]
Length = 243
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 118/173 (68%), Gaps = 13/173 (7%)
Query: 113 ILKQLGHPEI-------------IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKF 159
I+KQ PEI I +N+V T+++ C LDL I R +EYNP +F
Sbjct: 43 IIKQDIEPEIKDVVVSDDANSSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRF 102
Query: 160 HGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHN 219
+IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI N
Sbjct: 103 AAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQN 162
Query: 220 IVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
IV +CDV+FP++L+ L H FSSYEPELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 163 IVGSCDVKFPIRLEGLAFSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKI 215
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 72 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 131
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 132 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGHFSSYEPE 191
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 192 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYQAFEAIYPVLSEF 240
>gi|380027888|ref|XP_003697647.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 319
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 146 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 206 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 265
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKV 291
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 148 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 207
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 208 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 267
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 268 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 314
>gi|340727525|ref|XP_003402092.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
gi|350422935|ref|XP_003493334.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 314
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 141 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 200
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 201 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 260
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 261 PELFPGLIYRMVKPRIVLLIFVSGKV 286
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 143 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 202
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 203 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 262
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 263 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 309
>gi|383858146|ref|XP_003704563.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 318
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 145 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 204
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 205 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 264
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 265 PELFPGLIYRMVKPRIVLLIFVSGKV 290
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 147 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 206
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 207 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 266
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 267 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 313
>gi|346470907|gb|AEO35298.1| hypothetical protein [Amblyomma maculatum]
Length = 309
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 136 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 195
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FKI N+V +CDVRFP++L+ L HSQFSSYE
Sbjct: 196 KSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYE 255
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 256 PELFPGLIYRMVKPRIVLLIFVSGKV 281
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 138 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 197
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 198 EEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEPE 257
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 258 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILK 304
>gi|320582327|gb|EFW96544.1| TATA-binding protein, general transcription factor [Ogataea
parapolymorpha DL-1]
Length = 246
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 73 LQNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 132
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 133 KSEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGTFSSYE 192
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 193 PELFPGLIYRMVKPKIVLLIFVSGKI 218
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 75 NIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 134
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLA+RK+A+I+++LG + + F +N+VG+ V P+ L + + +S Y P
Sbjct: 135 EDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGTFSSYEPE 194
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 195 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREE 228
>gi|255719850|ref|XP_002556205.1| KLTH0H07502p [Lachancea thermotolerans]
gi|238942171|emb|CAR30343.1| KLTH0H07502p [Lachancea thermotolerans CBS 6340]
Length = 230
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK++++GA
Sbjct: 57 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVIGA 116
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 117 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 176
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 177 PELFPGLIYRMVKPKIVLLIFVSGKI 202
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK++++GAK
Sbjct: 59 NIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVIGAKS 118
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 119 EDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 178
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 179 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 227
>gi|448112531|ref|XP_004202120.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|448115084|ref|XP_004202744.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359383612|emb|CCE79528.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359465109|emb|CCE88814.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
Length = 241
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 68 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 127
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 128 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 187
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 188 PELFPGLIYRMVKPKIVLLIFVSGKI 213
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 70 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 129
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 130 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 189
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 190 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEF 238
>gi|332374462|gb|AEE62372.1| unknown [Dendroctonus ponderosae]
Length = 318
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 145 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 204
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HS FSSYE
Sbjct: 205 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSSFSSYE 264
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 265 PELFPGLIYRMVKPRIVLLIFVSGKV 290
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 147 NIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 206
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 207 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSSFSSYEPE 266
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 267 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 313
>gi|62859883|ref|NP_001017309.1| TATA box-binding protein-like protein 2 [Xenopus (Silurana)
tropicalis]
gi|123915918|sp|Q28DH2.1|TBPL2_XENTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; Short=xTBPL2; AltName:
Full=TATA box-binding protein-related factor 3;
Short=TBP-related factor 3
gi|89274001|emb|CAJ81377.1| Novel protein similar to TBP [Xenopus (Silurana) tropicalis]
Length = 322
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 148 LQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 207
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 208 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 267
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 268 PELFPGLIYRMVKPRIVLLIFVSGKV 293
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 150 NIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 209
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 210 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 269
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 270 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 316
>gi|366997981|ref|XP_003683727.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
gi|357522022|emb|CCE61293.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
Length = 244
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL + R +E+NP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 71 LQNIVATVNLGCRLDLKTVALHARNAEFNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 130
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 131 KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 190
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLL+FV+G+I
Sbjct: 191 PELFPGLIYRMVKPKIVLLVFVSGKI 216
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL + R +E+NP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 73 NIVATVNLGCRLDLKTVALHARNAEFNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 132
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 133 EDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 192
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 193 LFPGLIYRMVKPKIVLLVFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 241
>gi|427788157|gb|JAA59530.1| Putative tata-box-binding protein [Rhipicephalus pulchellus]
Length = 308
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 135 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 194
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FKI N+V +CDVRFP++L+ L HSQFSSYE
Sbjct: 195 KSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYE 254
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 255 PELFPGLIYRMVKPRIVLLIFVSGKV 280
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 137 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 196
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 197 EEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEPE 256
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 257 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILK 303
>gi|378401306|emb|CBK13156.1| TATA binding protein, partial [Oreochromis mossambicus]
Length = 247
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EY+P +F +IM+I PRTT L F SGK++ GA
Sbjct: 100 LQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 159
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V CDV+FP++L+ L H QFSSYE
Sbjct: 160 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGNCDVKFPIRLEGLVLTHQQFSSYE 219
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 220 PELFPGLIYRMIKPRIVLLIFVSGKV 245
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EY+P +F +IM+I PRTT L F SGK++ GAK
Sbjct: 102 NIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 161
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG V P+ L + + ++S Y P
Sbjct: 162 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGNCDVKFPIRLEGLVLTHQQFSSYEPE 221
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLI 183
F GLI +++ PR L F SGK+++
Sbjct: 222 LFPGLIYRMIKPRIVLLIFVSGKVVL 247
>gi|294659650|ref|XP_002770623.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
gi|199434124|emb|CAR65957.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
Length = 243
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 70 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 129
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 130 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 189
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 190 PELFPGLIYRMVKPKIVLLIFVSGKI 215
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 72 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 131
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 132 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 191
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 192 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEF 240
>gi|226088558|dbj|BAH37024.1| TATA-box binding protein [Oryzias latipes]
Length = 305
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 131 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 190
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ KI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 191 KSEEQSRLAARKYARVVQKLGFPAKFLDLKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 250
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 251 PELFPGLIYRMIKPRIVLLIFVSGKV 276
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 133 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 192
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + +NMVG+ V P+ L + + ++S Y P
Sbjct: 193 EEQSRLAARKYARVVQKLGFPAKFLDLKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 252
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 253 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 299
>gi|66536790|ref|XP_623088.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Apis mellifera]
Length = 319
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 146 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 206 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 265
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKV 291
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 148 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 207
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 208 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 267
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 268 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 314
>gi|392596142|gb|EIW85465.1| TBP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 295
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 122 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 181
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 182 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 241
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 242 PELFPGLIYRMLKPKVVLLIFVSGKI 267
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 124 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 183
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 184 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 243
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI ++L P+ L F SGK+++ GAK + A +L + P
Sbjct: 244 LFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRKP 295
>gi|297478910|ref|XP_002690449.1| PREDICTED: TATA-box-binding protein, partial [Bos taurus]
gi|296483816|tpg|DAA25931.1| TPA: TATA box binding protein-like [Bos taurus]
Length = 227
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 111/145 (76%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 73 ENIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 132
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 133 SEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEP 192
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 193 ELFPGLIYRMIKPRIVLLIFVSGKV 217
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 99/153 (64%), Gaps = 2/153 (1%)
Query: 37 TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
T N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 71 TTENIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 130
Query: 97 AKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEY 154
AK E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y
Sbjct: 131 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 190
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
P F GLI +++ PR L F SGK+++ GAK
Sbjct: 191 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 223
>gi|385301759|gb|EIF45927.1| tata-box binding protein [Dekkera bruxellensis AWRI1499]
Length = 259
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 86 LQNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 145
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 146 KSEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGTFSSYE 205
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 206 PELFPGLIYRMVKPKIVLLIFVSGKI 231
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 88 NIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 147
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLA+RK+A+I+++LG + + F +N+VG+ V P+ L + + +S Y P
Sbjct: 148 EDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGTFSSYEPE 207
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 208 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREE 241
>gi|241566250|ref|XP_002402125.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
gi|215499985|gb|EEC09479.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
Length = 286
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 113 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 172
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FKI N+V +CDVRFP++L+ L HSQFSSYE
Sbjct: 173 KSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYE 232
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 233 PELFPGLIYRMVKPRIVLLIFVSGKV 258
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 115 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 174
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 175 EEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEPE 234
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 235 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRAEIYEAFDNIYPILK 281
>gi|320588959|gb|EFX01427.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 268
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+ N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 95 WENIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 154
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 155 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 214
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 215 PELFPGLIYRMIKPKIVLLIFVSGKI 240
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 3/207 (1%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVR 61
S K N GI +A A + K R N+V T+++ C LDL I R
Sbjct: 60 SEKDGNAPNGIKAASTNPASAPGTVATTENKRLRRWE-NIVATVNLDCRLDLKTIALHAR 118
Query: 62 YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HP 120
+EYNP +F +IM+I +P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG +
Sbjct: 119 NAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNA 178
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
+ F +N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SG
Sbjct: 179 KFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSG 238
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQL 206
K+++ GAK + A +L+
Sbjct: 239 KIVLTGAKVREEIYTAFEMIYPVLQDF 265
>gi|91081661|ref|XP_969326.1| PREDICTED: similar to DNA-binding protein [Tribolium castaneum]
gi|270006234|gb|EFA02682.1| hypothetical protein TcasGA2_TC008403 [Tribolium castaneum]
Length = 311
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 138 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 197
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HS FSSYE
Sbjct: 198 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSSFSSYE 257
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 258 PELFPGLIYRMVKPRIVLLIFVSGKV 283
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 140 NIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 199
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 200 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSSFSSYEPE 259
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 260 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRQEIYEAFDNIYPILK 306
>gi|62528966|gb|AAX84779.1| TATA-binding protein [Hydractinia echinata]
Length = 227
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I S R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 54 LQNIVSTVNLSCKLDLKKIASHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 113
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI NIV +CDV+FP++L+ L HSQF SYE
Sbjct: 114 KSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSYE 173
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G++
Sbjct: 174 PELFPGLIYRMVKPKIVLLIFVSGKV 199
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I S R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 56 NIVSTVNLSCKLDLKKIASHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 115
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +N+VG+ V P+ L + + ++ Y P
Sbjct: 116 EEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSYEPE 175
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ P+ L F SGK+++ GAK + A IL+
Sbjct: 176 LFPGLIYRMVKPKIVLLIFVSGKVVLTGAKVRSEIYEAFESIYPILR 222
>gi|260941770|ref|XP_002615051.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
gi|238851474|gb|EEQ40938.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
Length = 237
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 64 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 123
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 124 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 183
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 184 PELFPGLIYRMVKPKIVLLIFVSGKI 209
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 66 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 125
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 126 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 185
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 186 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEF 234
>gi|213401857|ref|XP_002171701.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
gi|211999748|gb|EEB05408.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 231
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 58 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 117
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 118 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYE 177
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 178 PELFPGLIYRMVKPKIVLLIFVSGKI 203
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 60 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 119
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 120 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPE 179
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 180 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRKP 231
>gi|335309027|ref|XP_003361466.1| PREDICTED: TATA-box-binding protein [Sus scrofa]
Length = 326
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 111/144 (77%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 154 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 213
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEPE
Sbjct: 214 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 273
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 274 LFPGLIYRMIKPRIVLLIFVSGKV 297
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 154 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 213
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 214 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 273
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 274 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 320
>gi|37726730|gb|AAO34516.1| TATA-binding protein isoform 1 [Branchiostoma floridae]
gi|37726734|gb|AAO34519.1| TATA-binding protein isoform 3 [Branchiostoma floridae]
Length = 331
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 114/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GA
Sbjct: 157 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGA 216
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H+QFSSYE
Sbjct: 217 KSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYE 276
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 277 PELFPGLIYRMVKPRIVLLIFVSGKV 302
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK
Sbjct: 159 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKS 218
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 219 EDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPE 278
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 279 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFETIYPILK 325
>gi|37726732|gb|AAO34517.1| TATA-binding protein isoform 2 [Branchiostoma floridae]
Length = 329
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 114/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GA
Sbjct: 155 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGA 214
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H+QFSSYE
Sbjct: 215 KSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYE 274
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 275 PELFPGLIYRMVKPRIVLLIFVSGKV 300
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK
Sbjct: 157 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKS 216
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 217 EDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPE 276
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 277 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFETIYPILK 323
>gi|357155673|ref|XP_003577198.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 202
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 19 HPSGIVPMLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 78
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 79 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 138
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 139 HGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKI 172
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 29 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 88
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 89 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 148
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 149 LFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEF 197
>gi|297853252|ref|XP_002894507.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
gi|297340349|gb|EFH70766.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
Length = 200
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
HS FSSYEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 137 HSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKI 170
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
EH KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 147 LFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLTEF 195
>gi|147902539|ref|NP_001080921.1| TATA box-binding protein-like protein 2 [Xenopus laevis]
gi|75570954|sp|Q5UE94.1|TBPL2_XENLA RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|54402365|gb|AAV34742.1| TATA-binding protein 2 [Xenopus laevis]
Length = 320
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 146 LQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 206 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 265
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKV 291
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 148 NIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 207
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 208 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 267
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 268 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 314
>gi|54696182|gb|AAV38463.1| TATA box binding protein [Homo sapiens]
Length = 336
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 162 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 221
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ H QFSSYE
Sbjct: 222 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGPVLTHQQFSSYE 281
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 282 PELFPGLIYRMIKPRIVLLIFVSGKV 307
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 164 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 223
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 224 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGPVLTHQQFSSYEPE 283
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 284 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 330
>gi|357146320|ref|XP_003573949.1| PREDICTED: TATA-box-binding protein 1-like [Brachypodium
distachyon]
Length = 235
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F S
Sbjct: 52 HPSGIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFAS 111
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P ++ FKI NIV +CDV+FP++L+ L +
Sbjct: 112 GKMVCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYS 171
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLL+FV+G+I
Sbjct: 172 HGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKI 205
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 62 NIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 121
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P F +N+V + V P+ L + S +S Y P
Sbjct: 122 EEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPE 181
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 182 LFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTE 229
>gi|326522452|dbj|BAK07688.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F S
Sbjct: 50 HPSGIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFAS 109
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P ++ FKI NIV +CDV+FP++L+ L +
Sbjct: 110 GKMVCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYS 169
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLL+FV+G+I
Sbjct: 170 HGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKI 203
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 60 NIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 119
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P F +N+V + V P+ L + S +S Y P
Sbjct: 120 EEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPE 179
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 180 LFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTE 227
>gi|390598615|gb|EIN08013.1| TATA-box binding protein, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 189
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 16 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 75
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 76 KSEDDSRLAARKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 135
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 136 PELFPGLIYRMLKPKVVLLIFVSGKI 161
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 18 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 77
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 78 EDDSRLAARKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 137
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI ++L P+ L F SGK+++ GAK + A +L + P
Sbjct: 138 LFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYAAFNTIYTVLCEFRKP 189
>gi|15222732|ref|NP_175948.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|30695955|ref|NP_849812.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|135627|sp|P28148.1|TBP2_ARATH RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|16546|emb|CAA38742.1| transcription initiation factor II [Arabidopsis thaliana]
gi|4204264|gb|AAD10645.1| transcription initiation factor II [Arabidopsis thaliana]
gi|30102756|gb|AAP21296.1| At1g55520 [Arabidopsis thaliana]
gi|39545930|gb|AAR28028.1| TBP2 [Arabidopsis thaliana]
gi|110743161|dbj|BAE99472.1| transcription initiation factor TFIID-2 [Arabidopsis thaliana]
gi|225898024|dbj|BAH30344.1| hypothetical protein [Arabidopsis thaliana]
gi|332195136|gb|AEE33257.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|332195137|gb|AEE33258.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|227073|prf||1613452A transcription initiation factor TFIID-1
Length = 200
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
HS FSSYEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 137 HSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKI 170
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
EH KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L++
Sbjct: 147 LFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREF 195
>gi|356571702|ref|XP_003554013.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
HS FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HSAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|357119735|ref|XP_003561589.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 200
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEF 195
>gi|351727953|ref|NP_001238202.1| TATA-box-binding protein [Glycine max]
gi|3122946|sp|Q42808.1|TBP_SOYBN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1220522|gb|AAA91948.1| TATA-box binding protein [Glycine max]
Length = 200
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|135641|sp|P26356.1|TBP1_WHEAT RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|21875|emb|CAA42531.1| TATA binding protein (TFIID) [Triticum aestivum]
Length = 233
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F S
Sbjct: 50 HPSGIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFAS 109
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P ++ FKI NIV +CDV+FP++L+ L +
Sbjct: 110 GKMVCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYS 169
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLL+FV+G+I
Sbjct: 170 HGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKI 203
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 60 NIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 119
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P F +N+V + V P+ L + S +S Y P
Sbjct: 120 EEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPE 179
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 180 LFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTE 227
>gi|135640|sp|P26357.1|TBP_SOLTU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|21581|emb|CAA44360.1| TATA-binding protein [Solanum tuberosum]
Length = 200
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYA 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + + +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 195
>gi|1174643|sp|P46272.1|TBP_ACECL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2654376|emb|CAA82267.1| TATA box binding protein [Acetabularia peniculus]
Length = 191
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 117/154 (75%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++GC L+L +I + R +EYNP +F +IM+I +P+TT L F S
Sbjct: 10 HPSGIIPELQNVVSTVNLGCTLELKEIAMQARNAEYNPKRFAAVIMRIRDPKTTALIFGS 69
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E D + A+RK+AKI+++LG P K+ FKI NIV +CDV+FP++++ L +
Sbjct: 70 GKMVCTGAKSEQDSRTAARKYAKIVQKLGFPAKFTEFKIQNIVGSCDVKFPIRMEPLAYQ 129
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H QF SYEPELFPGLIYRM++P++VLLIFV+G++
Sbjct: 130 HQQFCSYEPELFPGLIYRMLQPKIVLLIFVSGKV 163
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC L+L +I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 20 NVVSTVNLGCTLELKEIAMQARNAEYNPKRFAAVIMRIRDPKTTALIFGSGKMVCTGAKS 79
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D + A+RK+AKI+++LG P + F +N+VG+ V P+ + + + ++ Y P
Sbjct: 80 EQDSRTAARKYAKIVQKLGFPAKFTEFKIQNIVGSCDVKFPIRMEPLAYQHQQFCSYEPE 139
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++L P+ L F SGK+++ GAK + A + +L Q
Sbjct: 140 LFPGLIYRMLQPKIVLLIFVSGKVVLTGAKERTEIYRAFEQIYPVLTQF 188
>gi|307204782|gb|EFN83340.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 304
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 131 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 190
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 191 KSEADSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSYE 250
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 251 PELFPGLIYRMVKPRIVLLIFVSGKV 276
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 133 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 192
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + S ++S Y P
Sbjct: 193 EADSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSYEPE 252
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 253 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRKEIYEAFDNIYPILK 299
>gi|406607792|emb|CCH40897.1| TATA-box-binding protein [Wickerhamomyces ciferrii]
Length = 238
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 124
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 125 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGPFSSYE 184
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 185 PELFPGLIYRMVKPKIVLLIFVSGKI 210
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 67 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 126
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 127 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGPFSSYEPE 186
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 187 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLNEF 235
>gi|393238580|gb|EJD46116.1| TBP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 305
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 132 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 191
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 192 KSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 251
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 252 PELFPGLIYRMLKPKVVLLIFVSGKI 277
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 134 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 193
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 194 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 253
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI ++L P+ L F SGK+++ GAK + A +L + P
Sbjct: 254 LFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYAAFNTIYTVLCEFRKP 305
>gi|356568214|ref|XP_003552308.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+S+ C L+L I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVSLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+S+ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVSLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|343427608|emb|CBQ71135.1| probable TATA-box-binding factor TBP [Sporisorium reilianum SRZ2]
Length = 241
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/186 (48%), Positives = 126/186 (67%), Gaps = 2/186 (1%)
Query: 89 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPEI--IFFFFRNMVGTISVGCPLDLNQIN 146
+G L + + D K+AS L+Q G + I +N+V T+++ LDL I
Sbjct: 28 AGALSKVNGAGDDDKKVASIGKDAGLEQQGLSSVHGIVPTLQNIVATVNLEVRLDLKTIA 87
Query: 147 SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
R +EYNP +F +IM+I P+TT L F SGK+++ GAK E D +LASRK+A+I+++L
Sbjct: 88 LHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQKL 147
Query: 207 GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLI 266
G K+ FKI NIV +CDVRFP++L+ L + H +SSYEPELFPGLIYRMVKP+VVLLI
Sbjct: 148 GFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLI 207
Query: 267 FVNGRI 272
FV+G+I
Sbjct: 208 FVSGKI 213
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 70 NIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 129
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S YS Y P
Sbjct: 130 EDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPE 189
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 190 LFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRKP 241
>gi|50308801|ref|XP_454405.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643540|emb|CAG99492.1| KLLA0E10099p [Kluyveromyces lactis]
Length = 233
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 60 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 119
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 120 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 179
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 180 PELFPGLIYRMVKPKIVLLIFVSGKI 205
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 62 NIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 121
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 122 EDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 181
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 182 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 230
>gi|126274078|ref|XP_001387406.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
gi|126213276|gb|EAZ63383.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
Length = 247
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 74 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 133
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 134 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 193
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 194 PELFPGLIYRMVKPKIVLLIFVSGKI 219
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 76 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 135
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 136 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 195
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 196 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFESIYPVLSEF 244
>gi|17298080|dbj|BAB78514.1| TATA-box binding protein [Ephydatia fluviatilis]
Length = 281
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 114/146 (78%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GA
Sbjct: 108 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALVFSSGKMVCTGA 167
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG P ++ FKI N+V +CDV+FP++L+ L HSQFSSYE
Sbjct: 168 KSEDLSRLAARKYARIIQKLGFPARFMEFKIQNMVGSCDVKFPIRLEGLVVQHSQFSSYE 227
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 228 PELFPGLIYRMVKPRIVLLIFVSGKV 253
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK
Sbjct: 110 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALVFSSGKMVCTGAKS 169
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG P + F +NMVG+ V P+ L + ++S Y P
Sbjct: 170 EDLSRLAARKYARIIQKLGFPARFMEFKIQNMVGSCDVKFPIRLEGLVVQHSQFSSYEPE 229
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 230 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERTEIIEAFHNIYPILK 276
>gi|339251280|ref|XP_003373123.1| TATA-box-binding protein [Trichinella spiralis]
gi|316968993|gb|EFV53163.1| TATA-box-binding protein [Trichinella spiralis]
Length = 260
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 113/146 (77%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL QI + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 87 LQNIVSTVNLGCKLDLKQIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 146
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L++ HSQFS+YE
Sbjct: 147 KSEDLSRLAARKYARIVQKLGFDAKFMDFKVQNMVGSCDVRFPIQLESFCLTHSQFSAYE 206
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 207 PELFPGLIYRMVKPRVVLLIFVSGKV 232
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL QI + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 89 NIVSTVNLGCKLDLKQIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 148
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + ++S Y P
Sbjct: 149 EDLSRLAARKYARIVQKLGFDAKFMDFKVQNMVGSCDVRFPIQLESFCLTHSQFSAYEPE 208
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK++I GAK + D A ILK
Sbjct: 209 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKEKRDIDEAFTSIYPILKSF 257
>gi|363753780|ref|XP_003647106.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890742|gb|AET40289.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
Length = 239
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 66 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 126 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 185
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 186 PELFPGLIYRMVKPKIVLLIFVSGKI 211
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 NIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 127
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 128 EDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 187
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 188 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 236
>gi|242038657|ref|XP_002466723.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
gi|241920577|gb|EER93721.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
Length = 200
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEF 195
>gi|449452638|ref|XP_004144066.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
gi|449493574|ref|XP_004159356.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
Length = 200
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEF 195
>gi|45201230|ref|NP_986800.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|44986084|gb|AAS54624.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|374110049|gb|AEY98954.1| FAGR134Wp [Ashbya gossypii FDAG1]
Length = 239
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 66 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 126 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 185
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 186 PELFPGLIYRMVKPKIVLLIFVSGKI 211
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 NIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 127
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I++++G + F +N+VG+ V P+ L + S +S Y P
Sbjct: 128 EDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 187
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 188 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 236
>gi|115454423|ref|NP_001050812.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|73919858|sp|Q8W0W4.2|TBP2_ORYSJ RecName: Full=TATA-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|31415973|gb|AAP50993.1| TATA-binding protein TBP2 [Oryza sativa Japonica Group]
gi|108710181|gb|ABF97976.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113549283|dbj|BAF12726.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|215686467|dbj|BAG87728.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 20 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 79
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 80 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 139
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 140 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 173
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 30 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 89
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 90 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 149
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 150 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 198
>gi|1351224|sp|P48511.1|TBP_MESCR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|841440|gb|AAA80641.1| TATA-binding protein [Mesembryanthemum crystallinum]
Length = 200
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 115/156 (73%)
Query: 117 LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAF 176
+ HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F
Sbjct: 15 IKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIF 74
Query: 177 QSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH 236
SGK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L
Sbjct: 75 ASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLA 134
Query: 237 HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 135 YSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEF 195
>gi|162459891|ref|NP_001105318.1| TATA-box-binding protein 1 [Zea mays]
gi|1729907|sp|P50158.1|TBP1_MAIZE RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|293904|gb|AAA65941.1| TATA-binding protein [Zea mays]
gi|414872053|tpg|DAA50610.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 200
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEF 195
>gi|196007384|ref|XP_002113558.1| TATA-binding protein [Trichoplax adhaerens]
gi|190583962|gb|EDV24032.1| TATA-binding protein [Trichoplax adhaerens]
Length = 203
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 120/167 (71%), Gaps = 10/167 (5%)
Query: 106 ASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMK 165
A+ + A IL QL +N+V T+++GC L+L +I R +EYNP +F +IM+
Sbjct: 19 ATAEAASILPQL----------QNIVSTVNLGCRLELQRIALHARNAEYNPKRFAAVIMR 68
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 225
I PRTT L F SGK++ GAK E +LA+RK+A+++++LG P K+ F+I N+V +CD
Sbjct: 69 IREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVIQKLGFPAKFTEFRIQNMVGSCD 128
Query: 226 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
V+FP++L+ L H QFSSYEPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 129 VKFPIRLEGLVLAHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 175
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 32 NIVSTVNLGCRLELQRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 91
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 92 EEQSRLAARKYARVIQKLGFPAKFTEFRIQNMVGSCDVKFPIRLEGLVLAHGQFSSYEPE 151
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 152 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRDEIYEAFDNIYPILK 198
>gi|4102725|gb|AAD10238.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|162459971|ref|NP_001105319.1| TATA-box-binding protein 2 [Zea mays]
gi|1729908|sp|P50159.1|TBP2_MAIZE RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|293906|gb|AAA65942.1| TATA-binding protein [Zea mays]
gi|195604414|gb|ACG24037.1| TATA-binding protein 2 [Zea mays]
gi|238014342|gb|ACR38206.1| unknown [Zea mays]
gi|413933540|gb|AFW68091.1| TATA-binding protein2 [Zea mays]
Length = 200
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEF 195
>gi|242022166|ref|XP_002431512.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212516806|gb|EEB18774.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 298
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 125 LQNIVSTVNLGCKLDLKKIAIHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 184
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 185 KSEDDSRLAARKYARIIQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 244
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 245 PELFPGLIYRMVKPRIVLLIFVSGKV 270
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 127 NIVSTVNLGCKLDLKKIAIHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 186
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 187 EDDSRLAARKYARIIQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 246
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 247 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 293
>gi|291241110|ref|XP_002740460.1| PREDICTED: TATA box binding protein-like [Saccoglossus kowalevskii]
Length = 293
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 119 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 178
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 179 KSEDFSRLAARKYARVIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 238
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 239 PELFPGLIYRMVKPRIVLLIFVSGKV 264
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 121 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 180
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 181 EDFSRLAARKYARVIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 240
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 241 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRKEIYEAFENIYPILK 287
>gi|222625492|gb|EEE59624.1| hypothetical protein OsJ_11965 [Oryza sativa Japonica Group]
Length = 207
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 20 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 79
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 80 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 139
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 140 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 173
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 30 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 89
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 90 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 149
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 150 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 198
>gi|363814312|ref|NP_001242795.1| uncharacterized protein LOC100810213 [Glycine max]
gi|255644444|gb|ACU22726.1| unknown [Glycine max]
Length = 200
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 115/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPPKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGH-PEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P+ F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPPKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|326921220|ref|XP_003206860.1| PREDICTED: TATA box-binding protein-like protein 2-like [Meleagris
gallopavo]
Length = 328
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 154 LQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 213
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 214 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 273
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 274 PELFPGLIYRMVKPRIVLLIFVSGKV 299
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 156 NIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 215
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 216 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 275
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A IL+
Sbjct: 276 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILR 322
>gi|4102723|gb|AAD10237.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|322801294|gb|EFZ21981.1| hypothetical protein SINV_10030 [Solenopsis invicta]
Length = 306
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 133 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 192
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 193 KSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSYE 252
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 253 PELFPGLIYRMVKPRIVLLIFVSGKV 278
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 135 NIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 194
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + S ++S Y P
Sbjct: 195 EGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSYEPE 254
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 255 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRTEIYEAFDNIYPILK 301
>gi|332021125|gb|EGI61512.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 305
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 132 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 191
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 192 KSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSYE 251
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 252 PELFPGLIYRMVKPRIVLLIFVSGKV 277
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 134 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 193
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + S ++S Y P
Sbjct: 194 EGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSYEPE 253
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 254 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRKEIYEAFDNIYPILK 300
>gi|50547559|ref|XP_501249.1| YALI0B23056p [Yarrowia lipolytica]
gi|49647115|emb|CAG83502.1| YALI0B23056p [Yarrowia lipolytica CLIB122]
Length = 227
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 54 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 113
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYE
Sbjct: 114 RSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 173
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 174 PELFPGLIYRMVKPKIVLLIFVSGKI 199
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA+
Sbjct: 56 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGARS 115
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V P+ L + S +S Y P
Sbjct: 116 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPE 175
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 176 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLNEF 224
>gi|307182447|gb|EFN69682.1| TATA-box-binding protein [Camponotus floridanus]
Length = 305
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 132 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 191
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 192 KSEGDSRLAARKYARIIQKLGFPAKFIDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSYE 251
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 252 PELFPGLIYRMVKPRIVLLIFVSGKV 277
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 134 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 193
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + I F +NMVG+ V P+ L + S ++S Y P
Sbjct: 194 EGDSRLAARKYARIIQKLGFPAKFIDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSYEPE 253
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 254 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRKEIYEAFDNIYPILK 300
>gi|413933539|gb|AFW68090.1| TATA-binding protein2, partial [Zea mays]
Length = 205
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEF 195
>gi|402225771|gb|EJU05832.1| TBP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 235
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 62 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 121
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG ++ FKI NIV +CDV+FP++L+ L + H QFSSYE
Sbjct: 122 KSEDDSRLASRKYARIVQKLGFDTRFVDFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYE 181
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 182 PELFPGLIYRMLKPKVVLLIFVSGKI 207
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 64 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 123
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S ++S Y P
Sbjct: 124 EDDSRLASRKYARIVQKLGFDTRFVDFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 183
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI ++L P+ L F SGK+++ GAK + A +L++ P
Sbjct: 184 LFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLQEFKKP 235
>gi|89267100|emb|CAJ41964.1| TF21_MAIZE Transcription initiation factor TFIID-1 [Ustilago
hordei]
gi|388856434|emb|CCF49983.1| probable TATA-box-binding factor TBP [Ustilago hordei]
Length = 239
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/185 (49%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Query: 89 SGKLLILGAKHEHDCKLASR-KFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINS 147
+G L E D K A+ K A + + L I +N+V T+++ LDL I
Sbjct: 27 AGALTKANGASEDDKKPAALGKDASLEQGLSSVHGIVPTLQNIVATVNLEVRLDLKTIAL 86
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
R +EYNP +F +IM+I P+TT L F SGK+++ GAK E D +LASRK+A+I+++LG
Sbjct: 87 HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLG 146
Query: 208 HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIF 267
K+ FKI NIV +CDVRFP++L+ L + H +SSYEPELFPGLIYRMVKP+VVLLIF
Sbjct: 147 FEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIF 206
Query: 268 VNGRI 272
V+G+I
Sbjct: 207 VSGKI 211
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 NIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 127
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S YS Y P
Sbjct: 128 EDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPE 187
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 188 LFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRKP 239
>gi|451854730|gb|EMD68022.1| hypothetical protein COCSADRAFT_156488 [Cochliobolus sativus
ND90Pr]
gi|452000886|gb|EMD93346.1| hypothetical protein COCHEDRAFT_1153946 [Cochliobolus
heterostrophus C5]
Length = 249
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 121/193 (62%), Gaps = 8/193 (4%)
Query: 88 QSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEI--------IFFFFRNMVGTISVGCP 139
Q L + EH+ + + + P+ I +N+V T+++
Sbjct: 29 QGANLDMTAPSTEHNTQQVAENANGVATPAATPDTQNGQVPSGIVPTLQNIVATVNLSAR 88
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK E D +LASRK+
Sbjct: 89 LDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAKSEDDSRLASRKY 148
Query: 200 AKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVK 259
A+I+++LG K+ FKI NIV +CD+RFP++L+ L H FSSYEPELFPGLIYRM+K
Sbjct: 149 ARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHTFSSYEPELFPGLIYRMMK 208
Query: 260 PRVVLLIFVNGRI 272
PR+VLLIFV+G+I
Sbjct: 209 PRIVLLIFVSGKI 221
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 78 NIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAKS 137
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 138 EDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHTFSSYEPE 197
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ PR L F SGK+++ GAK
Sbjct: 198 LFPGLIYRMMKPRIVLLIFVSGKIVLTGAK 227
>gi|218184579|gb|EEC67006.1| hypothetical protein OsI_33717 [Oryza sativa Indica Group]
Length = 226
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 120/162 (74%)
Query: 111 AKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPR 170
A+ + + HP I +N+V T+++ C LDL +I + R +EYNP +F +IM+I +P+
Sbjct: 33 AEPVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPK 92
Query: 171 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPV 230
TT L F SGK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP+
Sbjct: 93 TTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPI 152
Query: 231 KLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+L+ L + H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 153 RLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 194
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 51 NIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 110
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 111 EDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 170
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI ++ P+ L F SGK+++ GAK+ + A +L +
Sbjct: 171 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTE 218
>gi|125574885|gb|EAZ16169.1| hypothetical protein OsJ_31618 [Oryza sativa Japonica Group]
Length = 224
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 120/162 (74%)
Query: 111 AKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPR 170
A+ + + HP I +N+V T+++ C LDL +I + R +EYNP +F +IM+I +P+
Sbjct: 31 AEPVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPK 90
Query: 171 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPV 230
TT L F SGK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP+
Sbjct: 91 TTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPI 150
Query: 231 KLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+L+ L + H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 151 RLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 192
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 49 NIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 108
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 109 EDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 168
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI ++ P+ L F SGK+++ GAK+ + A +L +
Sbjct: 169 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTE 216
>gi|115482150|ref|NP_001064668.1| Os10g0432300 [Oryza sativa Japonica Group]
gi|78708692|gb|ABB47667.1| TATA-box binding protein 1, putative, expressed [Oryza sativa
Japonica Group]
gi|113639277|dbj|BAF26582.1| Os10g0432300 [Oryza sativa Japonica Group]
Length = 223
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 120/162 (74%)
Query: 111 AKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPR 170
A+ + + HP I +N+V T+++ C LDL +I + R +EYNP +F +IM+I +P+
Sbjct: 31 AEPVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPK 90
Query: 171 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPV 230
TT L F SGK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP+
Sbjct: 91 TTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPI 150
Query: 231 KLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+L+ L + H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 151 RLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 192
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 49 NIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKS 108
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 109 EDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 168
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI ++ P+ L F SGK+++ GAK+ + A +L +
Sbjct: 169 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTE 216
>gi|39725630|tpg|DAA02137.1| TPA_exp: TBP-related factor 3 [Xenopus laevis]
Length = 320
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 146 LQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QF+SYE
Sbjct: 206 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFNSYE 265
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKV 291
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 148 NIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 207
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + +++ Y P
Sbjct: 208 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFNSYEPE 267
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 268 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 314
>gi|449667471|ref|XP_002160884.2| PREDICTED: TATA-box-binding protein-like isoform 1 [Hydra
magnipapillata]
Length = 255
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 82 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 141
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI NIV +CDV+FP++L+ L HSQF SYE
Sbjct: 142 KSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSYE 201
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 202 PELFPGLIYRMVKPRIVLLIFVSGKV 227
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 84 NIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +N+VG+ V P+ L + + ++ Y P
Sbjct: 144 EEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A IL+
Sbjct: 204 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFESIYPILR 250
>gi|426376979|ref|XP_004055257.1| PREDICTED: TATA box-binding protein-like protein 2 [Gorilla gorilla
gorilla]
Length = 375
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALQAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKV 347
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 204 NIVSTVNLACKLDLKKIALQAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 263
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 264 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 323
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 324 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 370
>gi|322802013|gb|EFZ22550.1| hypothetical protein SINV_10179 [Solenopsis invicta]
Length = 158
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 103/128 (80%)
Query: 145 INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
IN R R SEYNP +F GLIM+I NPR T L F+SGKL+ GA+ E D LA++KFA+I++
Sbjct: 3 INVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGARSEEDSLLAAKKFARIIQ 62
Query: 205 QLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVL 264
+LG P+K+ FKI NIV TCD++FP+KLD L+ +H QFSSYEPEL+PGL YRMV PRVVL
Sbjct: 63 KLGFPVKFTCFKIQNIVATCDLKFPIKLDNLNQMHGQFSSYEPELYPGLTYRMVLPRVVL 122
Query: 265 LIFVNGRI 272
LIFVNG++
Sbjct: 123 LIFVNGKV 130
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 56 INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 115
IN R R SEYNP +F GLIM+I NPR T L F+SGKL+ GA+ E D LA++KFA+I++
Sbjct: 3 INVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGARSEEDSLLAAKKFARIIQ 62
Query: 116 QLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPGKFHGLIMKILNPRTTC 173
+LG P + F +N+V T + P+ L+ +N ++S Y P + GL +++ PR
Sbjct: 63 KLGFPVKFTCFKIQNIVATCDLKFPIKLDNLNQMHGQFSSYEPELYPGLTYRMVLPRVVL 122
Query: 174 LAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
L F +GK+++ GAK+ + + A ILK
Sbjct: 123 LIFVNGKVVLTGAKNRTELQDALNNIYPILKSF 155
>gi|395535316|ref|XP_003769674.1| PREDICTED: TATA-box-binding protein [Sarcophilus harrisii]
Length = 309
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 134 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SSY 245
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QF SSY
Sbjct: 194 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSSY 253
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 254 EPELFPGLIYRMIKPRIVLLIFVSGKV 280
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 136 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 195
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYNP 156
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + S Y P
Sbjct: 196 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSSYEP 255
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 256 ELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 303
>gi|18481630|gb|AAL73490.1|AF464907_1 TATA-binding protein TBP2 [Oryza sativa]
Length = 203
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 20 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 79
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 80 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIXNIVGSCDVKFPIRLEGLAYS 139
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 140 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 173
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 30 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 89
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F N+VG+ V P+ L + S +S Y P
Sbjct: 90 EQQSKLAARKYARIIQKLGFPAKFKDFKIXNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 149
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 150 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 198
>gi|193620436|ref|XP_001949590.1| PREDICTED: TATA-box-binding protein-like [Acyrthosiphon pisum]
Length = 298
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R +E+NP +F +IM+I PRTT L F SGK++ GA
Sbjct: 125 LQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 184
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++L P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 185 KSEEDSRLAARKYARIIQKLSFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 244
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 245 PELFPGLIYRMVKPRIVLLIFVSGKV 270
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R +E+NP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 127 NIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 186
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E D +LA+RK+A+I+++L P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 187 EEDSRLAARKYARIIQKLSFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 246
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 247 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAYDNIYPILK 293
>gi|340939166|gb|EGS19788.1| putative tata-box binding protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 255
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 75 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 134
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 135 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKH 194
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 195 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 227
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 144 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 204 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREE 237
>gi|149642959|ref|NP_001092323.1| TATA box-binding protein-like protein 2 [Gallus gallus]
gi|148910849|tpg|DAA06035.1| TPA_inf: TATA box binding protein-like 2 [Gallus gallus]
Length = 328
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 154 LQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 213
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 214 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 273
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 274 PELFPGLIYRMVKPRIVLLIFVSGKV 299
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 156 NIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 215
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 216 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 275
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A IL+
Sbjct: 276 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILR 322
>gi|312069027|ref|XP_003137490.1| TATA-box binding protein [Loa loa]
gi|307767348|gb|EFO26582.1| TATA-box binding protein [Loa loa]
Length = 369
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 197 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 256
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS+YE
Sbjct: 257 KSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYE 316
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 317 PELFPGLIYRMVKPRVVLLIFVSGKV 342
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 199 NIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 258
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 259 EESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPE 318
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK++I GAK++ D A + ILK
Sbjct: 319 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILK 365
>gi|85096222|ref|XP_960219.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|28921702|gb|EAA30983.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|39979211|emb|CAE85582.1| probable TRANSCRIPTION INITIATION FACTOR TFIID [Neurospora crassa]
Length = 257
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 203
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 204 PELFPGLIYRMIKPKIVLLIFVSGKI 229
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 86 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 145
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 146 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPE 205
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 206 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 235
>gi|974216|emb|CAA62224.1| TATA-box binding protein [Zea mays]
Length = 215
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEF 195
>gi|414872052|tpg|DAA50609.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 215
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEF 195
>gi|336465922|gb|EGO54087.1| hypothetical protein NEUTE1DRAFT_118055 [Neurospora tetrasperma
FGSC 2508]
gi|350287243|gb|EGZ68490.1| putative transcription initiation factor [Neurospora tetrasperma
FGSC 2509]
Length = 257
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 203
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 204 PELFPGLIYRMIKPKIVLLIFVSGKI 229
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 86 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 145
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 146 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPE 205
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 206 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 235
>gi|171681966|ref|XP_001905926.1| hypothetical protein [Podospora anserina S mat+]
gi|170940942|emb|CAP66592.1| unnamed protein product [Podospora anserina S mat+]
Length = 255
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 75 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 134
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 135 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKH 194
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 195 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 227
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 144 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 204 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 233
>gi|384501418|gb|EIE91909.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 239
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 66 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 125
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLA+RK+A+I+++LG K+ FKI NIV +CD++FP++L+ L + H FSSYE
Sbjct: 126 KSEDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDIKFPIRLEGLAYSHGHFSSYE 185
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 186 PELFPGLIYRMVKPKIVLLIFVSGKI 211
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 127
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLA+RK+A+I+++LG + F +N+VG+ + P+ L + S +S Y P
Sbjct: 128 EDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDIKFPIRLEGLAYSHGHFSSYEPE 187
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A + +L + P
Sbjct: 188 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFQAIYPVLTEFRKP 239
>gi|358060360|dbj|GAA93765.1| hypothetical protein E5Q_00411 [Mixia osmundae IAM 14324]
Length = 367
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 194 LQNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 253
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG +++ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 254 KSEDDSRLASRKYARIIQKLGFEAQFKEFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYE 313
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP+VVLLIFV+G+I
Sbjct: 314 PELFPGLIYRMVKPKVVLLIFVSGKI 339
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 196 NIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 255
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 256 EDDSRLASRKYARIIQKLGFEAQFKEFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPE 315
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A + +L + P
Sbjct: 316 LFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYSAFQLIYPVLSEFRKP 367
>gi|170591981|ref|XP_001900748.1| TATA-box binding protein [Brugia malayi]
gi|158591900|gb|EDP30503.1| TATA-box binding protein, putative [Brugia malayi]
Length = 347
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 175 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 234
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS+YE
Sbjct: 235 KSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYE 294
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 295 PELFPGLIYRMVKPRVVLLIFVSGKV 320
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 177 NIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 236
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 237 EESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPE 296
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK++I GAK++ D A + ILK
Sbjct: 297 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILK 343
>gi|44967740|gb|AAS49577.1| TATA box binding protein (TBP)-associated factor [Latimeria
chalumnae]
Length = 249
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 92 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 151
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H Q SSYE
Sbjct: 152 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQSSSYE 211
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLL FV+G++
Sbjct: 212 PELFPGLIYRMIKPRIVLLXFVSGKV 237
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 94 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 153
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + + S Y P
Sbjct: 154 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQSSSYEPE 213
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ PR L F SGK+++ GAK
Sbjct: 214 LFPGLIYRMIKPRIVLLXFVSGKVVLTGAK 243
>gi|315418834|gb|ADU15470.1| TATA box binding protein [Penaeus monodon]
Length = 300
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 127 LQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 186
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HSQFSSYE
Sbjct: 187 KSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYE 246
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+ ++
Sbjct: 247 PELFPGLIYRMVKPRIVLLIFVSRKV 272
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 129 NIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 188
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 189 EQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPE 248
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F S K+++ GAK + A ILK
Sbjct: 249 LFPGLIYRMVKPRIVLLIFVSRKVVLTGAKVRNQIYEAFDNIYPILKSF 297
>gi|322711070|gb|EFZ02644.1| TATA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 253
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 73 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 132
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 133 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 192
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 193 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 225
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 141
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 142 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 201
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 202 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 231
>gi|356532171|ref|XP_003534647.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|324518621|gb|ADY47156.1| TATA-box-binding protein, partial [Ascaris suum]
Length = 384
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 212 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 271
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS+YE
Sbjct: 272 KSEEASRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYE 331
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 332 PELFPGLIYRMVKPRVVLLIFVSGKV 357
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 214 NIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 273
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 274 EEASRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPE 333
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK++I GAK + D A + ILK
Sbjct: 334 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKFKKDIDDAFNQIYPILK 380
>gi|189192825|ref|XP_001932751.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330941403|ref|XP_003306059.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
gi|187978315|gb|EDU44941.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311316652|gb|EFQ85856.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
Length = 249
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 111/153 (72%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 69 PSGIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASG 128
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CD+RFP++L+ L H
Sbjct: 129 KMVVTGAKSEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRH 188
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KPR+VLLIFV+G+I
Sbjct: 189 HTFSSYEPELFPGLIYRMMKPRIVLLIFVSGKI 221
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 78 NIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAKS 137
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 138 EDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHTFSSYEPE 197
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ PR L F SGK+++ GAK
Sbjct: 198 LFPGLIYRMMKPRIVLLIFVSGKIVLTGAK 227
>gi|156053057|ref|XP_001592455.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980]
gi|154704474|gb|EDO04213.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 251
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 78 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 137
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 138 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHMNFSSYE 197
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 198 PELFPGLIYRMMKPKIVLLIFVSGKI 223
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 80 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 139
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR + +S Y P
Sbjct: 140 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHMNFSSYEPE 199
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 200 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREE 233
>gi|3122921|sp|O17488.1|TBP_ARTSF RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2623958|emb|CAA05488.1| TATA-binding protein [Artemia franciscana]
Length = 275
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 113/150 (75%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 182
I N+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F SGK++
Sbjct: 99 IIPVLENIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 158
Query: 183 ILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
GAK E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QF
Sbjct: 159 CTGAKSEEDSRLAARKYARIVQKLGFSAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 218
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
SSYEPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 219 SSYEPELFPGLIYRMVKPRIVLLIFVSGKV 248
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 105 NIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 164
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 165 EEDSRLAARKYARIVQKLGFSAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 224
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 225 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILK 271
>gi|1729912|sp|P53361.1|TBP_SPOFR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349117|gb|AAA62394.1| DNA-binding protein [Spodoptera frugiperda]
Length = 307
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 134 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 194 KSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 253
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 254 PELFPGLIYRMVKPRIVLLIFVSGKV 279
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 136 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 195
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 196 EEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 255
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 256 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILK 302
>gi|392573053|gb|EIW66195.1| hypothetical protein TREMEDRAFT_41045 [Tremella mesenterica DSM
1558]
Length = 255
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F ++M+I P+TT L F SGK+++ GA
Sbjct: 78 LQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPKTTALIFASGKMVVTGA 137
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 138 KSEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 197
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 198 PELFPGLIYRMLKPKVVLLIFVSGKI 223
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F ++M+I P+TT L F SGK+++ GAK
Sbjct: 80 NIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPKTTALIFASGKMVVTGAKS 139
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 140 EDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 199
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++L P+ L F SGK+++ GAK + +A + +L +
Sbjct: 200 LFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYMAFNQIYAVLTEF 248
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ V P+ L + S +S Y P F GLI ++L P+ L F SGK+++ GAK
Sbjct: 170 NIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAK 229
Query: 99 HEHDCKLASRKFAKILKQLGHPEI 122
+ +A + +L + +I
Sbjct: 230 VREEIYMAFNQIYAVLTEFRKDQI 253
>gi|397523415|ref|XP_003831727.1| PREDICTED: TATA box-binding protein-like protein 2 [Pan paniscus]
gi|410048302|ref|XP_003952543.1| PREDICTED: TATA box binding protein like 2 [Pan troglodytes]
Length = 375
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKV 347
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 204 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 263
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 264 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 323
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 324 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 370
>gi|224145959|ref|XP_002325828.1| global transcription factor group [Populus trichocarpa]
gi|222862703|gb|EEF00210.1| global transcription factor group [Populus trichocarpa]
Length = 201
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL QI + R +EYNP +F +IM+I P+TT L F S
Sbjct: 18 HPSGIVPILQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 77
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 78 GKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 137
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPE+FPGLIYRM +P++VLLIFV+G+I
Sbjct: 138 HGAFSSYEPEIFPGLIYRMKQPKIVLLIFVSGKI 171
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL QI + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 28 NIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 87
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 88 EQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 147
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 148 IFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEF 196
>gi|154318373|ref|XP_001558505.1| transcription initiation factor TFIID, TATA binding protein
[Botryotinia fuckeliana B05.10]
gi|347837614|emb|CCD52186.1| similar to transcription initiation factor TFIID [Botryotinia
fuckeliana]
Length = 251
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 78 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 137
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 138 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHMNFSSYE 197
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 198 PELFPGLIYRMMKPKIVLLIFVSGKI 223
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 80 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 139
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR + +S Y P
Sbjct: 140 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHMNFSSYEPE 199
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 200 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 248
>gi|109658498|gb|AAI17186.1| TATA box binding protein like 2 [Homo sapiens]
gi|109658806|gb|AAI17160.1| TATA box binding protein like 2 [Homo sapiens]
gi|313883330|gb|ADR83151.1| TATA box binding protein like 2 [synthetic construct]
Length = 375
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKV 347
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 204 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 263
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 264 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 323
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 324 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 370
>gi|342879468|gb|EGU80715.1| hypothetical protein FOXB_08755 [Fusarium oxysporum Fo5176]
Length = 254
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 74 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 133
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 134 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 193
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 194 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 226
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 142
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 143 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 202
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 203 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 251
>gi|39930602|ref|NP_950248.1| TATA box-binding protein-like protein 2 [Homo sapiens]
gi|74749326|sp|Q6SJ96.1|TBPL2_HUMAN RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569209|gb|AAR24281.1| TBP-related factor 3 [Homo sapiens]
gi|90296776|gb|ABD93323.1| TATA box binding protein like 2 [Homo sapiens]
Length = 375
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKV 347
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 204 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 263
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 264 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 323
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 324 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 370
>gi|414872051|tpg|DAA50608.1| TPA: hypothetical protein ZEAMMB73_869091, partial [Zea mays]
Length = 195
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI ++ P+ L F SGK+++ GAK
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|48374984|gb|AAT42180.1| TATA sequence-binding protein 1 (TBP-1) [Zea mays]
gi|414872054|tpg|DAA50611.1| TPA: TATA sequence-binding protein 1 [Zea mays]
Length = 287
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 111/145 (76%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
RN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 103 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 162
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 163 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 222
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 223 ELFPGLIYRMKQPKIVLLIFVSGKI 247
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 14/210 (6%)
Query: 11 GIGSACIGGGQACFCLIRGGQ------------KNRRGTNLNMVGTISVGCPLDLNQINS 58
+G + G + IRG + N+R N+V T+++ C LDL I
Sbjct: 63 AVGQRALPWGSSVLKAIRGDEMDIDYTTYWDSSDNKRIGVRNIVSTVNLDCKLDLKAIAL 122
Query: 59 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 118
+ R +EYNP +F +IM+I P+TT L F SGK++ GAK E KLA+RK+A+I+++LG
Sbjct: 123 QARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLG 182
Query: 119 HP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAF 176
P + F +N+VG+ V P+ L + S +S Y P F GLI ++ P+ L F
Sbjct: 183 FPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIF 242
Query: 177 QSGKLLILGAKHEHDCKLASRKFAKILKQL 206
SGK+++ GAK + A +L +
Sbjct: 243 VSGKIVLTGAKVREETYTAFENIYPVLAEF 272
>gi|164656154|ref|XP_001729205.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
gi|159103095|gb|EDP41991.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
Length = 257
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 135/227 (59%), Gaps = 16/227 (7%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
L L Q ++V S+ + K L + NP T+ + D K A +
Sbjct: 7 LQLPQAQAKVTSSDASQQKPLALPTQSKNPDTSS-----------QNTADEDDKSAVKDT 55
Query: 111 AKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMK 165
I + + I +N+V T+++ LDL I R +EYNP +F +IM+
Sbjct: 56 QSIPAPITEQTLSNMHGIVPTLQNIVATVNLEARLDLKTIALHARNAEYNPKRFAAVIMR 115
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 225
I P+TT L F SGK++I GAK E D +LASRK+A+I+++LG ++ FKI NIV +CD
Sbjct: 116 IREPKTTALIFASGKMVITGAKSEDDSRLASRKYARIIQKLGFEARFSEFKIQNIVGSCD 175
Query: 226 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
VRFP++L+ L + H +SSYEPELFPGLIYRMVKP+VVLLIFV+G+I
Sbjct: 176 VRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKI 222
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 79 NIVATVNLEARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKS 138
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E D +LASRK+A+I+++LG E F F +N+VG+ V P+ L + S YS Y P
Sbjct: 139 EDDSRLASRKYARIIQKLGF-EARFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEP 197
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 198 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAK 228
>gi|119601081|gb|EAW80675.1| TATA box binding protein like 2, isoform CRA_a [Homo sapiens]
Length = 307
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 134 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 194 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 253
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 254 PELFPGLIYRMVKPRIVLLIFVSGKV 279
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 136 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 195
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 196 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 255
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 256 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 302
>gi|405124108|gb|AFR98870.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 232
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GA
Sbjct: 58 LQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGA 117
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 118 KSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYE 177
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VV+LIFV+G+I
Sbjct: 178 PELFPGLIYRMLKPKVVILIFVSGKI 203
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GAK
Sbjct: 60 NIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAKS 119
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +NMVG+ V P+ L + S +S Y P
Sbjct: 120 EDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPE 179
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GLI ++L P+ L F SGK+++ GAK + +A + +L
Sbjct: 180 LFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVL 225
>gi|255936921|ref|XP_002559487.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584107|emb|CAP92136.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 92 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 151
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 152 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 211
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 212 PELFPGLIYRMMKPKIVLLIFVSGKI 237
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 94 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 153
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 154 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 213
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 214 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 243
>gi|48374976|gb|AAT42173.1| TATA sequence-binding protein 2 (TBP-2) [Zea mays]
gi|413933541|gb|AFW68092.1| TATA-binding protein2 [Zea mays]
Length = 392
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 111/145 (76%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
RN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 173 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 232
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 233 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 292
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 293 ELFPGLIYRMKQPKIVLLIFVSGKI 317
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 24 FCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTT 83
C G K+R N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT
Sbjct: 163 LCSHEEGNKDR-----NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 217
Query: 84 CLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDL 142
L F SGK++ GAK E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L
Sbjct: 218 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 277
Query: 143 NQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 201
+ S +S Y P F GLI ++ P+ L F SGK+++ GAK + A
Sbjct: 278 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYP 337
Query: 202 ILKQL 206
+L +
Sbjct: 338 VLSEF 342
>gi|294034|gb|AAA16924.1| TATA box-binding protein, partial [Onchocerca volvulus]
Length = 179
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 7 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS+YE
Sbjct: 67 KSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYE 126
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 127 PELFPGLIYRMVKPRVVLLIFVSGKV 152
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 9 NIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 68
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 69 EESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPE 128
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK++I GAK++ D A + ILK
Sbjct: 129 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILK 175
>gi|358386238|gb|EHK23834.1| hypothetical protein TRIVIDRAFT_89322 [Trichoderma virens Gv29-8]
Length = 253
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 73 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 132
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 133 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 192
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 193 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 225
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 141
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 142 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 201
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 202 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 250
>gi|336276668|ref|XP_003353087.1| hypothetical protein SMAC_03405 [Sordaria macrospora k-hell]
gi|380092572|emb|CCC09849.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 257
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 203
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 204 PELFPGLIYRMIKPKIVLLIFVSGKI 229
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 86 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 145
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 146 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPE 205
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 206 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 235
>gi|218193429|gb|EEC75856.1| hypothetical protein OsI_12863 [Oryza sativa Indica Group]
Length = 190
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 111/145 (76%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
RN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 12 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 72 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 131
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 132 ELFPGLIYRMKQPKIVLLIFVSGKI 156
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 13 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 73 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 132
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 133 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 181
>gi|63145982|gb|AAY33926.1| TATA box binding protein [Ovis aries]
Length = 141
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 108/141 (76%)
Query: 132 GTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E
Sbjct: 1 STVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQ 60
Query: 192 CKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFP 251
+LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEPELFP
Sbjct: 61 SRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFP 120
Query: 252 GLIYRMVKPRVVLLIFVNGRI 272
GLIYRM+KPR+VLLIFV+G++
Sbjct: 121 GLIYRMIKPRIVLLIFVSGKV 141
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 90/141 (63%), Gaps = 2/141 (1%)
Query: 43 GTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 102
T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E
Sbjct: 1 STVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQ 60
Query: 103 CKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFH 160
+LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P F
Sbjct: 61 SRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFP 120
Query: 161 GLIMKILNPRTTCLAFQSGKL 181
GLI +++ PR L F SGK+
Sbjct: 121 GLIYRMIKPRIVLLIFVSGKV 141
>gi|112983068|ref|NP_001037059.1| TATA-box-binding protein [Bombyx mori]
gi|14423945|sp|O45211.1|TBP_BOMMO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|3326928|emb|CAA11000.1| TBP [Bombyx mori]
Length = 307
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 134 LQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 194 KSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 253
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 254 PELFPGLIYRMVKPRIVLLIFVSGKV 279
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 136 NIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 195
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 196 EEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 255
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 256 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILK 302
>gi|332237163|ref|XP_003267773.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Nomascus leucogenys]
Length = 379
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 206 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 265
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 266 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 325
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 326 PELFPGLIYRMVKPRIVLLIFVSGKV 351
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 208 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 267
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 268 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 327
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 328 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 374
>gi|321264592|ref|XP_003197013.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Cryptococcus gattii WM276]
gi|317463491|gb|ADV25226.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit), putative [Cryptococcus gattii WM276]
Length = 232
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GA
Sbjct: 58 LQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGA 117
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 118 KSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYE 177
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VV+LIFV+G+I
Sbjct: 178 PELFPGLIYRMLKPKVVILIFVSGKI 203
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GAK
Sbjct: 60 NIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAKS 119
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +NMVG+ V P+ L + S +S Y P
Sbjct: 120 EDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPE 179
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GLI ++L P+ L F SGK+++ GAK + +A + +L
Sbjct: 180 LFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVL 225
>gi|440638539|gb|ELR08458.1| TATA-box-binding protein [Geomyces destructans 20631-21]
Length = 262
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYE 208
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 209 PELFPGLIYRMIKPKIVLLIFVSGKI 234
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 91 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 150
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 151 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPE 210
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 211 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 240
>gi|357612491|gb|EHJ68026.1| TATA-box-binding protein [Danaus plexippus]
Length = 306
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 133 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 192
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 193 KSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 252
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 253 PELFPGLIYRMVKPRIVLLIFVSGKV 278
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 135 NIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 194
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 195 EEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 254
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 255 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 301
>gi|58270288|ref|XP_572300.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134117708|ref|XP_772488.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255102|gb|EAL17841.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228558|gb|AAW44993.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 232
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GA
Sbjct: 58 LQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGA 117
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 118 KSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYE 177
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP+VV+LIFV+G+I
Sbjct: 178 PELFPGLIYRMLKPKVVILIFVSGKI 203
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GAK
Sbjct: 60 NIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAKS 119
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +NMVG+ V P+ L + S +S Y P
Sbjct: 120 EDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPE 179
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GLI ++L P+ L F SGK+++ GAK + +A + +L
Sbjct: 180 LFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVL 225
>gi|449296869|gb|EMC92888.1| hypothetical protein BAUCODRAFT_76816 [Baudoinia compniacensis UAMH
10762]
Length = 240
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 67 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 127 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 186
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 187 PELFPGLIYRMMKPKIVLLIFVSGKI 212
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 128
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 129 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPE 188
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 189 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 218
>gi|425767263|gb|EKV05837.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum PHI26]
gi|425780061|gb|EKV18083.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum Pd1]
Length = 263
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 90 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 149
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 150 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 209
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 210 PELFPGLIYRMMKPKIVLLIFVSGKI 235
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 92 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 151
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 152 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 211
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 212 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 241
>gi|367029935|ref|XP_003664251.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
gi|347011521|gb|AEO59006.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
Length = 257
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 77 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 136
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 137 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKH 196
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 197 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 229
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 86 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 145
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 146 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPE 205
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 206 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 254
>gi|355693296|gb|EHH27899.1| hypothetical protein EGK_18211 [Macaca mulatta]
Length = 376
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 203 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 262
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 263 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 322
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 323 PELFPGLIYRMVKPRIVLLIFVSGKV 348
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 205 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 264
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 265 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 324
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 325 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 371
>gi|340517005|gb|EGR47251.1| TATA binding protein [Trichoderma reesei QM6a]
Length = 253
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 73 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 132
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 133 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 192
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 193 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 225
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 141
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 142 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 201
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 202 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 250
>gi|344273811|ref|XP_003408712.1| PREDICTED: TATA box-binding protein-like protein 2-like [Loxodonta
africana]
Length = 344
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 171 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 230
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 231 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 290
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 291 PELFPGLIYRMVKPRIVLLIFVSGKV 316
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 173 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 232
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 233 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 292
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 293 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 339
>gi|358394886|gb|EHK44279.1| hypothetical protein TRIATDRAFT_300545 [Trichoderma atroviride IMI
206040]
Length = 253
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 73 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 132
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 133 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 192
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 193 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 225
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 141
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 142 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 201
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 202 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 250
>gi|170674514|gb|ACB30147.1| TATA binding protein [Epichloe festucae]
Length = 256
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 76 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 135
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 136 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 195
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 196 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 228
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 144
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 145 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 204
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 205 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 253
>gi|402876253|ref|XP_003901890.1| PREDICTED: TATA box-binding protein-like protein 2 [Papio anubis]
Length = 376
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 203 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 262
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 263 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 322
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 323 PELFPGLIYRMVKPRIVLLIFVSGKV 348
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 205 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 264
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 265 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 324
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 325 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 371
>gi|310798673|gb|EFQ33566.1| transcription factor TFIID [Glomerella graminicola M1.001]
Length = 256
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 83 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 142
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 143 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 202
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 203 PELFPGLIYRMIKPKIVLLIFVSGKI 228
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 144
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 145 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 204
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 205 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 253
>gi|302758308|ref|XP_002962577.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
gi|302824582|ref|XP_002993933.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300138205|gb|EFJ04980.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300169438|gb|EFJ36040.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
Length = 199
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F S
Sbjct: 16 HPSGIIPTLQNIVSTVNMDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 75
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P +++ FKI NIV +CDV+FP++L+ L +
Sbjct: 76 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYA 135
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 136 HGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 169
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 NIVSTVNMDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 85
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + + +S Y P
Sbjct: 86 EQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEPE 145
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI ++ P+ L F SGK+++ GAK
Sbjct: 146 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 175
>gi|355778612|gb|EHH63648.1| hypothetical protein EGM_16656 [Macaca fascicularis]
Length = 376
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 203 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 262
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 263 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 322
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 323 PELFPGLIYRMVKPRIVLLIFVSGKV 348
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 205 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 264
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 265 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 324
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 325 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 371
>gi|346974478|gb|EGY17930.1| TATA-box-binding protein [Verticillium dahliae VdLs.17]
Length = 249
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 76 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 135
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 136 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 195
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 196 PELFPGLIYRMIKPKIVLLIFVSGKI 221
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 78 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 137
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 138 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 197
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 198 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 246
>gi|109083719|ref|XP_001088740.1| PREDICTED: TATA box-binding protein-like protein 2-like [Macaca
mulatta]
Length = 376
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 203 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 262
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 263 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 322
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 323 PELFPGLIYRMVKPRIVLLIFVSGKV 348
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 205 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 264
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 265 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 324
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 325 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 371
>gi|37726728|gb|AAO34515.1| TATA-binding protein [Petromyzon marinus]
Length = 292
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 118 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 177
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 178 KSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 237
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 238 PELFPGLIYRMVKPRIVLLIFVSGKV 263
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 120 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 179
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 180 EDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 239
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 240 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 286
>gi|367040469|ref|XP_003650615.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
gi|346997876|gb|AEO64279.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
Length = 256
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 76 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 135
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 136 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKH 195
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 196 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 228
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 144
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 145 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPE 204
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 205 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 253
>gi|302918240|ref|XP_003052617.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733557|gb|EEU46904.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 253
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 73 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 132
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 133 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 192
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 193 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 225
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 141
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 142 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 201
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 202 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 250
>gi|126282854|ref|XP_001376601.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Monodelphis domestica]
Length = 342
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 169 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 228
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RKFA+++++LG P ++ FKI N+V +CDVRFP++L++L H QFSSYE
Sbjct: 229 KSEELSRLAARKFARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLESLVLTHQQFSSYE 288
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGL+YRMVKPR+VLLIFV+G++
Sbjct: 289 PELFPGLVYRMVKPRIVLLIFVSGKV 314
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 171 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 230
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RKFA+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 231 EELSRLAARKFARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLESLVLTHQQFSSYEPE 290
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GL+ +++ PR L F SGK+++ GAK + A ILK
Sbjct: 291 LFPGLVYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 337
>gi|3122925|sp|Q12731.1|TBP_EMENI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|887878|gb|AAB57874.1| TATA-box binding protein [Emericella nidulans]
gi|887880|gb|AAB57876.1| TATA-box binding protein [Emericella nidulans]
Length = 268
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 95 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 154
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 155 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 214
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 215 PELFPGLIYRMMKPKIVLLIFVSGKI 240
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 97 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 156
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 157 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 216
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 217 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 246
>gi|37726863|gb|AAO34522.1| TATA-binding protein [Ginglymostoma cirratum]
Length = 302
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +E P +F +IM+I PRTT L F SGK++ GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEKKPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 188 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 247
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 248 PELFPGLIYRMIKPRIVLLIFVSGKV 273
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +E P +F +IM+I PRTT L F SGK++ GAK
Sbjct: 130 NIVSTVNLGCKLDLKTIALRARNAEKKPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 189
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 190 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 296
>gi|345560531|gb|EGX43656.1| hypothetical protein AOL_s00215g392 [Arthrobotrys oligospora ATCC
24927]
Length = 257
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHHFSSYE 203
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 204 PELFPGLIYRMIKPKIVLLIFVSGKI 229
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 86 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 145
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 146 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHHFSSYEPE 205
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 206 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 235
>gi|453083461|gb|EMF11507.1| transcription initiation factor TFIID, TATA binding protein
[Mycosphaerella populorum SO2202]
Length = 258
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 85 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 144
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 145 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 204
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 205 PELFPGLIYRMMKPKIVLLIFVSGKI 230
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 87 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 146
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 147 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPE 206
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 207 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 236
>gi|259482151|tpe|CBF76358.1| TPA: TATA-box-binding protein (TATA-box factor)(TATA-binding
factor)(TATA sequence-binding
protein)(TBP)(Transcription initiation factor TFIID TBP
subunit) [Source:UniProtKB/Swiss-Prot;Acc:Q12731]
[Aspergillus nidulans FGSC A4]
Length = 284
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 95 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 154
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 155 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 214
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 215 PELFPGLIYRMMKPKIVLLIFVSGKI 240
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 97 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 156
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 157 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 216
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 217 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 246
>gi|358368366|dbj|GAA84983.1| TATA-box binding protein [Aspergillus kawachii IFO 4308]
Length = 262
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKI 234
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 13 GSACIGGGQACFCLIRGGQKNRRGTNL-----NMVGTISVGCPLDLNQINSRVRYSEYNP 67
G+A G G A N G+ + N+V T+++ C LDL I R +EYNP
Sbjct: 59 GNAANGNGVAPATPAATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNP 118
Query: 68 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFF 126
+F +IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F
Sbjct: 119 KRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFK 178
Query: 127 FRNMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ G
Sbjct: 179 IQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTG 238
Query: 186 AK 187
AK
Sbjct: 239 AK 240
>gi|317036144|ref|XP_001397705.2| TATA-box-binding protein [Aspergillus niger CBS 513.88]
Length = 262
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKI 234
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 13 GSACIGGGQACFCLIRGGQKNRRGTNL-----NMVGTISVGCPLDLNQINSRVRYSEYNP 67
G+A G G A N G+ + N+V T+++ C LDL I R +EYNP
Sbjct: 59 GNATNGNGVAPATPAATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNP 118
Query: 68 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFF 126
+F +IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F
Sbjct: 119 KRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFK 178
Query: 127 FRNMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ G
Sbjct: 179 IQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTG 238
Query: 186 AK 187
AK
Sbjct: 239 AK 240
>gi|408395610|gb|EKJ74788.1| hypothetical protein FPSE_05036 [Fusarium pseudograminearum CS3096]
Length = 254
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 74 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 133
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 134 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 193
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 194 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 226
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 142
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 143 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 202
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 203 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 251
>gi|351714662|gb|EHB17581.1| TATA-box-binding protein [Heterocephalus glaber]
Length = 300
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 126 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 185
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 186 KSEEQSSRLARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 245
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 246 PELFPGLIYRMIKPRIVLLIFVSGKV 271
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 128 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 187
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 188 EEQSSRLARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 247
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 248 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 294
>gi|361131465|gb|EHL03148.1| putative TATA-box-binding protein [Glarea lozoyensis 74030]
Length = 255
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 201
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 202 PELFPGLIYRMIKPKIVLLIFVSGKI 227
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 144 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 204 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 252
>gi|312382984|gb|EFR28233.1| hypothetical protein AND_04068 [Anopheles darlingi]
Length = 327
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 154 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 213
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H +FSSYE
Sbjct: 214 KSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYE 273
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 274 PELFPGLIYRMVKPRIVLLIFVSGKV 299
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 156 NIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 215
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + R+S Y P
Sbjct: 216 EEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYEPE 275
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 276 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILK 322
>gi|378727024|gb|EHY53483.1| TATA-box-binding protein [Exophiala dermatitidis NIH/UT8656]
Length = 268
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 87 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 146
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 147 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHPFSSYE 206
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 207 PELFPGLIYRMIKPKIVLLIFVSGKI 232
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 89 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 148
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + S+ +S Y P
Sbjct: 149 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHPFSSYEPE 208
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 209 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 238
>gi|224123800|ref|XP_002319167.1| global transcription factor group [Populus trichocarpa]
gi|222857543|gb|EEE95090.1| global transcription factor group [Populus trichocarpa]
Length = 202
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C L+L QI + R +EYNP +F +IM+I P+TT L F S
Sbjct: 18 HPSGIVPTLQNIVSTVNLDCKLELKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 77
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 78 GKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 137
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 138 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 171
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L QI + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 28 NIVSTVNLDCKLELKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 87
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 88 EQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 147
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 148 LFPGLIYRMKQPKIVLLIFVSGKIVITGAKVREETYTAFENIYPVLTEF 196
>gi|401886560|gb|EJT50588.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 2479]
gi|406698490|gb|EKD01726.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 8904]
Length = 231
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 117/167 (70%), Gaps = 5/167 (2%)
Query: 111 AKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMK 165
A + Q PEI + +N+V T+++ C LDL I R +EYNP +F ++M+
Sbjct: 36 AVVRPQASVPEISPVQGLVPVLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMR 95
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 225
I P+TT L F SGK+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CD
Sbjct: 96 IREPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCD 155
Query: 226 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
V+FP++L+ L H FSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 156 VKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKI 202
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F ++M+I P+TT L F SGK+++ GAK
Sbjct: 59 NIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPKTTALIFASGKMVVTGAKS 118
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 119 EDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAFSHGAFSSYEPE 178
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++L P+ L F SGK+++ GAK + +A ++ +L +
Sbjct: 179 LFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYMAFKQIYSVLVEF 227
>gi|212526960|ref|XP_002143637.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526962|ref|XP_002143638.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526964|ref|XP_002143639.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|62956011|gb|AAY23352.1| TATA-binding protein [Talaromyces marneffei]
gi|62956013|gb|AAY23353.1| TATA-binding protein [Talaromyces marneffei]
gi|210073035|gb|EEA27122.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073036|gb|EEA27123.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073037|gb|EEA27124.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
Length = 255
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 201
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 202 PELFPGLIYRMMKPKIVLLIFVSGKI 227
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 144 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 204 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 233
>gi|297479762|ref|XP_002690959.1| PREDICTED: TATA box binding protein like 2 [Bos taurus]
gi|296483126|tpg|DAA25241.1| TPA: TATA box binding protein like 2-like [Bos taurus]
Length = 341
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 168 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 227
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ F I N+V +CDVRFP+ L+ L H QFSSYE
Sbjct: 228 KSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYE 287
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 288 PELFPGLIYRMVKPRIVLLIFVSGKV 313
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 170 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 229
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMV + V P+ L + + ++S Y P
Sbjct: 230 EEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYEPE 289
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK D A ILK
Sbjct: 290 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILK 336
>gi|296824240|ref|XP_002850621.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
gi|238838175|gb|EEQ27837.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
Length = 266
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 93 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 152
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 153 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 212
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 213 PELFPGLIYRMMKPKIVLLIFVSGKI 238
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 95 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 154
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 155 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 214
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 215 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 244
>gi|115396162|ref|XP_001213720.1| TATA-box binding protein [Aspergillus terreus NIH2624]
gi|114193289|gb|EAU34989.1| TATA-box binding protein [Aspergillus terreus NIH2624]
Length = 263
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 90 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 149
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 150 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 209
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 210 PELFPGLIYRMMKPKIVLLIFVSGKI 235
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 92 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 151
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 152 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 211
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 212 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 241
>gi|17298078|dbj|BAB78513.1| TATA-box binding protein [Lethenteron reissneri]
Length = 301
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 127 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 186
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 187 KSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 246
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 247 PELFPGLIYRMVKPRIVLLIFVSGKV 272
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 129 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 188
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 189 EDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 248
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 249 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 295
>gi|157265561|ref|NP_001098076.1| TATA box-binding protein-like protein 2 [Pan troglodytes]
gi|166987366|sp|A6H907.1|TBPL2_PANTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910843|tpg|DAA06032.1| TPA_inf: TATA box binding protein-like 2 [Pan troglodytes]
Length = 376
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 321
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 322 PELFPGLIYRMIKPRIVLLIFVSGKV 347
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 204 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 263
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 264 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 323
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 324 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 370
>gi|303317340|ref|XP_003068672.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108353|gb|EER26527.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320038620|gb|EFW20555.1| TATA-box binding protein [Coccidioides posadasii str. Silveira]
Length = 252
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 79 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 138
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 139 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 198
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 199 PELFPGLIYRMMKPKIVLLIFVSGKI 224
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 140
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 141 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 200
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 201 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 230
>gi|309252549|gb|ADO60139.1| TATA-binding protein, partial [Beauveria bassiana]
Length = 159
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 109/144 (75%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 1 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 60
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEPE
Sbjct: 61 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 120
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 121 LFPGLIYRMIKPKIVLLIFVSGKI 144
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 1 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 60
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 61 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 120
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 121 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREE 154
>gi|242782217|ref|XP_002479956.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|242782222|ref|XP_002479957.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720103|gb|EED19522.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720104|gb|EED19523.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
Length = 255
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 201
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 202 PELFPGLIYRMMKPKIVLLIFVSGKI 227
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 144 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 204 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 233
>gi|37726742|gb|AAO34521.1| TATA-binding protein [Eptatretus stoutii]
Length = 324
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 150 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 210 KSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 269
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 270 PELFPGLIYRMVKPRIVLLIFVSGKV 295
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 152 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 211
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 212 EDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 271
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 272 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRTEIYEAFDNIYPILK 318
>gi|452989027|gb|EME88782.1| hypothetical protein MYCFIDRAFT_209898 [Pseudocercospora fijiensis
CIRAD86]
Length = 260
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 87 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 146
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 147 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 206
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 207 PELFPGLIYRMMKPKIVLLIFVSGKI 232
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 89 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 148
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 149 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPE 208
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 209 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 238
>gi|429859533|gb|ELA34313.1| RNA polymerase i and iii transcription factor complex component
[Colletotrichum gloeosporioides Nara gc5]
Length = 256
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 83 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 142
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 143 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 202
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 203 PELFPGLIYRMIKPKIVLLIFVSGKI 228
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 144
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 145 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 204
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 205 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 253
>gi|295670940|ref|XP_002796017.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284150|gb|EEH39716.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 265
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 92 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 151
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 152 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 211
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 212 PELFPGLIYRMMKPKIVLLIFVSGKI 237
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 94 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 153
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 154 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 213
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 214 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREE 247
>gi|389632499|ref|XP_003713902.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|351646235|gb|EHA54095.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|440473248|gb|ELQ42063.1| TATA-box-binding protein [Magnaporthe oryzae Y34]
gi|440480212|gb|ELQ60887.1| TATA-box-binding protein [Magnaporthe oryzae P131]
Length = 255
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 201
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 202 PELFPGLIYRMIKPKIVLLIFVSGKI 227
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 144 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 204 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 252
>gi|328856236|gb|EGG05358.1| hypothetical protein MELLADRAFT_75016 [Melampsora larici-populina
98AG31]
Length = 233
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 60 LQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 119
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 120 KSEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVKFPIRLEGLAYNHGHFSSYE 179
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP+VVLLIFV+G+I
Sbjct: 180 PELFPGLIYRMVKPKVVLLIFVSGKI 205
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 62 NIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 121
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + F +N+VG+ V P+ L + + +S Y P
Sbjct: 122 EDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVKFPIRLEGLAYNHGHFSSYEPE 181
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 182 LFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNNIYPVLSEFRKP 233
>gi|70999782|ref|XP_754608.1| RNA polymerase I and III transcription factor complex component Tbp
[Aspergillus fumigatus Af293]
gi|66852245|gb|EAL92570.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus Af293]
gi|159127621|gb|EDP52736.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus A1163]
Length = 283
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 91 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 150
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 151 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 210
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 211 PELFPGLIYRMMKPKIVLLIFVSGKI 236
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 4/179 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 152
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 153 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 212
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFK 216
F GLI +++ P+ L F SGK+++ GAK + A +L G I + GFK
Sbjct: 213 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLS--GTVILFFGFK 269
>gi|296414351|ref|XP_002836865.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632706|emb|CAZ81056.1| unnamed protein product [Tuber melanosporum]
Length = 253
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 139
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 140 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHHFSSYE 199
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 200 PELFPGLIYRMIKPKIVLLIFVSGKI 225
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 10/195 (5%)
Query: 14 SACIGGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGL 73
+A GGG ++ Q N+V T+++ C LDL I R +EYNP +F +
Sbjct: 64 AATPGGGPTVSGIVPTLQ--------NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAV 115
Query: 74 IMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVG 132
IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F +N+VG
Sbjct: 116 IMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVG 175
Query: 133 TISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 176 SCDIKFPIRLEGLASRHHHFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREE 235
Query: 192 CKLASRKFAKILKQL 206
+A +L
Sbjct: 236 IYIAFESIYPVLNDF 250
>gi|400597791|gb|EJP65515.1| transcription factor TFIID [Beauveria bassiana ARSEF 2860]
Length = 253
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 73 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 132
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 133 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 192
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 193 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 225
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 141
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 142 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 201
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 202 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 250
>gi|121705502|ref|XP_001271014.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
gi|119399160|gb|EAW09588.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
Length = 273
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 91 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 150
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 151 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 210
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 211 PELFPGLIYRMMKPKIVLLIFVSGKI 236
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 152
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 153 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 212
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 213 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREE 246
>gi|119491905|ref|XP_001263447.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
gi|119411607|gb|EAW21550.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
Length = 264
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 91 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 150
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 151 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 210
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 211 PELFPGLIYRMMKPKIVLLIFVSGKI 236
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 152
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 153 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 212
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 213 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 242
>gi|407927098|gb|EKG20002.1| TATA-box binding protein [Macrophomina phaseolina MS6]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 77 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 136
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 137 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 196
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 197 PELFPGLIYRMMKPKIVLLIFVSGKI 222
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 79 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 138
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 139 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 198
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 199 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 228
>gi|224285248|gb|ACN40350.1| unknown [Picea sitchensis]
Length = 200
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P ++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHPE-IIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|194670970|ref|XP_871896.3| PREDICTED: TATA box binding protein like 2 [Bos taurus]
Length = 377
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 204 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 263
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ F I N+V +CDVRFP+ L+ L H QFSSYE
Sbjct: 264 KSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYE 323
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 324 PELFPGLIYRMVKPRIVLLIFVSGKV 349
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 206 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 265
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMV + V P+ L + + ++S Y P
Sbjct: 266 EEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYEPE 325
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK D A ILK
Sbjct: 326 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILK 372
>gi|225681638|gb|EEH19922.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb03]
gi|226288778|gb|EEH44290.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 265
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 92 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 151
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 152 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 211
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 212 PELFPGLIYRMMKPKIVLLIFVSGKI 237
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 94 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 153
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 154 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 213
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 214 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREE 247
>gi|134083254|emb|CAK46825.1| unnamed protein product [Aspergillus niger]
gi|350633630|gb|EHA21995.1| hypothetical protein ASPNIDRAFT_210581 [Aspergillus niger ATCC
1015]
Length = 282
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKI 234
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 13 GSACIGGGQACFCLIRGGQKNRRGTNL-----NMVGTISVGCPLDLNQINSRVRYSEYNP 67
G+A G G A N G+ + N+V T+++ C LDL I R +EYNP
Sbjct: 59 GNATNGNGVAPATPAATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNP 118
Query: 68 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFF 126
+F +IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F
Sbjct: 119 KRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFK 178
Query: 127 FRNMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ G
Sbjct: 179 IQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTG 238
Query: 186 AK 187
AK
Sbjct: 239 AK 240
>gi|315055559|ref|XP_003177154.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
gi|311339000|gb|EFQ98202.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
Length = 257
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 203
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 204 PELFPGLIYRMMKPKIVLLIFVSGKI 229
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 86 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 145
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 146 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 205
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 206 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 235
>gi|444728605|gb|ELW69055.1| TATA box-binding protein-like protein 2 [Tupaia chinensis]
Length = 378
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 205 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 264
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 265 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 324
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 325 PELFPGLIYRMVKPRIVLLIFVSGKV 350
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 207 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 266
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 267 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 326
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 327 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 373
>gi|346323634|gb|EGX93232.1| TATA-box binding protein [Cordyceps militaris CM01]
Length = 264
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 73 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 132
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 133 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 192
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 193 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 225
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 106/179 (59%), Gaps = 9/179 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 141
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 142 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 201
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS-------RKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A + F K +L HP
Sbjct: 202 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKATSKLNHP 260
>gi|320591748|gb|EFX04187.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 265
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 109/145 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 92 LQNIVATVNLACRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 151
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FPV+L+ L H FSSYE
Sbjct: 152 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPVRLEGLASRHHNFSSYE 211
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGR 271
PELFPGLIYRM+KP++VLLIFV+G+
Sbjct: 212 PELFPGLIYRMIKPKIVLLIFVSGK 236
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 94 NIVATVNLACRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 153
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 154 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPVRLEGLASRHHNFSSYEPE 213
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK ++ GAK + A +L+
Sbjct: 214 LFPGLIYRMIKPKIVLLIFVSGKTVLTGAKVREEIYQAFEMIYPVLQDF 262
>gi|391336328|ref|XP_003742533.1| PREDICTED: TATA-box-binding protein-like [Metaseiulus occidentalis]
Length = 295
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 112/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 122 LQNIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 181
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG K+ FKI N+V +CDVRFP++L+ L H QFSSYE
Sbjct: 182 KSEDQSRLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHCQFSSYE 241
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 242 PELFPGLIYRMVKPRIVLLIFVSGKV 267
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 124 NIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 183
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 184 EDQSRLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHCQFSSYEPE 243
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 244 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILK 290
>gi|261194208|ref|XP_002623509.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239588523|gb|EEQ71166.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239606906|gb|EEQ83893.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
ER-3]
gi|327351372|gb|EGE80229.1| hypothetical protein BDDG_03170 [Ajellomyces dermatitidis ATCC
18188]
Length = 262
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKI 234
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 91 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 150
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 151 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 210
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 211 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 240
>gi|158287840|ref|XP_309748.2| AGAP010958-PA [Anopheles gambiae str. PEST]
gi|157019382|gb|EAA45305.2| AGAP010958-PA [Anopheles gambiae str. PEST]
Length = 323
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 150 LQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 209
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H +FSSYE
Sbjct: 210 KSEDDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYE 269
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 270 PELFPGLIYRMVKPRIVLLIFVSGKV 295
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 152 NIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 211
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + R+S Y P
Sbjct: 212 EDDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYEPE 271
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 272 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILK 318
>gi|402086781|gb|EJT81679.1| TATA-box-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 255
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 82 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 141
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 142 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 201
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 202 PELFPGLIYRMIKPKIVLLIFVSGKI 227
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 143
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 144 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 203
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 204 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 252
>gi|406862826|gb|EKD15875.1| transcription initiation factor TFIID-2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 264
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 91 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 150
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 151 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 210
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 211 PELFPGLIYRMIKPKIVLLIFVSGKI 236
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 152
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 153 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 212
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L+
Sbjct: 213 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDF 261
>gi|217075508|gb|ACJ86114.1| unknown [Medicago truncatula]
Length = 200
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEVQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EVQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|71012922|ref|XP_758541.1| transcription initiation factor TFIID-1 [Ustilago maydis 521]
gi|46098199|gb|EAK83432.1| TF21_MAIZE Transcription initiation factor TFIID-1 (TATA-box factor
1) (TATA sequence-binding protein 1) (TBP-1) [Ustilago
maydis 521]
Length = 189
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 16 LQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 75
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H +SSYE
Sbjct: 76 KSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYE 135
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP+VVLLIFV+G+I
Sbjct: 136 PELFPGLIYRMVKPKVVLLIFVSGKI 161
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 18 NIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 77
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S YS Y P
Sbjct: 78 EDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPE 137
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 138 LFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRKP 189
>gi|426234189|ref|XP_004011082.1| PREDICTED: TATA box-binding protein-like protein 2 [Ovis aries]
Length = 443
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 270 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 329
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ F I N+V +CDVRFP+ L+ L H QFSSYE
Sbjct: 330 KSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYE 389
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 390 PELFPGLIYRMVKPRIVLLIFVSGKV 415
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 272 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 331
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMV + V P+ L + + ++S Y P
Sbjct: 332 EEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYEPE 391
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK D A ILK
Sbjct: 392 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILK 438
>gi|443895156|dbj|GAC72502.1| hypothetical protein PANT_7d00127 [Pseudozyma antarctica T-34]
Length = 238
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 65 LQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 124
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LASRK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H +SSYE
Sbjct: 125 KSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYE 184
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP+VVLLIFV+G+I
Sbjct: 185 PELFPGLIYRMVKPKVVLLIFVSGKI 210
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 67 NIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 126
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S YS Y P
Sbjct: 127 EDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPE 186
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI +++ P+ L F SGK+++ GAK + A +L + P
Sbjct: 187 LFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRKP 238
>gi|3122941|sp|P93348.1|TBP_TOBAC RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1498162|dbj|BAA13156.1| TATA binding protein (TBP) [Nicotiana tabacum]
Length = 200
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQSSKLAARKYARIIQKLGFDAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EQSSKLAARKYARIIQKLGFDAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|452839378|gb|EME41317.1| TATA-box binding-like protein [Dothistroma septosporum NZE10]
Length = 254
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 81 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 140
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 141 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 200
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 201 PELFPGLIYRMMKPKIVLLIFVSGKI 226
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 142
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 143 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPE 202
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 203 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREE 236
>gi|398406521|ref|XP_003854726.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
gi|339474610|gb|EGP89702.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
Length = 261
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 88 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 147
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 148 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYE 207
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 208 PELFPGLIYRMMKPKIVLLIFVSGKI 233
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 149
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 150 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPE 209
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 210 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 239
>gi|225556591|gb|EEH04879.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
G186AR]
gi|240273705|gb|EER37225.1| TATA-binding protein [Ajellomyces capsulatus H143]
gi|325087599|gb|EGC40909.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
H88]
Length = 262
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 149 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKI 234
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 91 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 150
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 151 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 210
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 211 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 240
>gi|170044283|ref|XP_001849783.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|170067801|ref|XP_001868625.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167863845|gb|EDS27228.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167867494|gb|EDS30877.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 322
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 149 LQNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 208
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H +FSSYE
Sbjct: 209 KSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGKFSSYE 268
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 269 PELFPGLIYRMVKPRIVLLIFVSGKV 294
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 151 NIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 210
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 211 EEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGKFSSYEPE 270
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 271 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILK 317
>gi|115489282|ref|NP_001067128.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|77556288|gb|ABA99084.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113649635|dbj|BAF30147.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|215736829|dbj|BAG95758.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 208
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 25 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 84
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 85 GKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 144
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 145 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 178
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 35 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 94
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 95 EQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 154
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 155 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 203
>gi|157167852|ref|XP_001662432.1| tata-box binding protein [Aedes aegypti]
gi|108871290|gb|EAT35515.1| AAEL012330-PA [Aedes aegypti]
Length = 319
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 146 LQNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 205
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H +FSSYE
Sbjct: 206 KSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGKFSSYE 265
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 266 PELFPGLIYRMVKPRIVLLIFVSGKV 291
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 148 NIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 207
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 208 EEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGKFSSYEPE 267
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 268 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILK 314
>gi|169770491|ref|XP_001819715.1| TATA-box-binding protein [Aspergillus oryzae RIB40]
gi|238487092|ref|XP_002374784.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|83767574|dbj|BAE57713.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699663|gb|EED56002.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|391867294|gb|EIT76540.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aspergillus oryzae 3.042]
Length = 263
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 90 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 149
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 150 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 209
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 210 PELFPGLIYRMMKPKIVLLIFVSGKI 235
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 13 GSACIGGGQACFCLIRGGQKNRRGTNL-----NMVGTISVGCPLDLNQINSRVRYSEYNP 67
G+A G G + N G+ + N+V T+++ C LDL I R +EYNP
Sbjct: 60 GNATNGNGVTPATPVATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNP 119
Query: 68 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFF 126
+F +IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F
Sbjct: 120 KRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFK 179
Query: 127 FRNMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ G
Sbjct: 180 IQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTG 239
Query: 186 AK 187
AK
Sbjct: 240 AK 241
>gi|440897977|gb|ELR49561.1| TATA box-binding protein-like protein 2, partial [Bos grunniens
mutus]
Length = 374
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 201 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 260
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ F I N+V +CDVRFP+ L+ L H QFSSYE
Sbjct: 261 KSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYE 320
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 321 PELFPGLIYRMVKPRIVLLIFVSGKV 346
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 203 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 262
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMV + V P+ L + + ++S Y P
Sbjct: 263 EEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSYEPE 322
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK D A ILK
Sbjct: 323 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILK 369
>gi|67537612|ref|XP_662580.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
gi|40741864|gb|EAA61054.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
Length = 211
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 22 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 81
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 82 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 141
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 142 PELFPGLIYRMMKPKIVLLIFVSGKI 167
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 24 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 83
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 84 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 143
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 144 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREE 177
>gi|15231241|ref|NP_187953.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|135626|sp|P28147.1|TBP1_ARATH RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|1943466|pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer)
gi|1943467|pdb|1VOK|B Chain B, Arabidopsis Thaliana Tbp (Dimer)
gi|1943469|pdb|1VOL|B Chain B, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
gi|7245860|pdb|1QN5|A Chain A, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245861|pdb|1QN5|B Chain B, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245866|pdb|1QN6|A Chain A, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245867|pdb|1QN6|B Chain B, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245872|pdb|1QN7|A Chain A, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245873|pdb|1QN7|B Chain B, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245878|pdb|1QN8|A Chain A, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245879|pdb|1QN8|B Chain B, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245884|pdb|1QN9|A Chain A, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245885|pdb|1QN9|B Chain B, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245890|pdb|1QNA|A Chain A, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245891|pdb|1QNA|B Chain B, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245896|pdb|1QNB|A Chain A, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245897|pdb|1QNB|B Chain B, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245902|pdb|1QNC|A Chain A, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245903|pdb|1QNC|B Chain B, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245908|pdb|1QNE|A Chain A, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245909|pdb|1QNE|B Chain B, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245938|pdb|1QN3|A Chain A, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245939|pdb|1QN3|B Chain B, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246010|pdb|1QN4|A Chain A, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246011|pdb|1QN4|B Chain B, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|11692888|gb|AAG40047.1|AF324696_1 AT3g13445 [Arabidopsis thaliana]
gi|11935207|gb|AAG42019.1|AF327429_1 putative transcription initiation factor TFIID-1 [Arabidopsis
thaliana]
gi|13194816|gb|AAK15570.1|AF349523_1 putative TATA sequence-binding transcription initiation factor
protein [Arabidopsis thaliana]
gi|16548|emb|CAA38743.1| transcription initiation factor II [Arabidopsis thaliana]
gi|9280296|dbj|BAB01751.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|15451056|gb|AAK96799.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|18377408|gb|AAL66870.1| transcription initiation factor TFIID-1 [Arabidopsis thaliana]
gi|21537103|gb|AAM61444.1| transcription initiation factor TFIID-1 (TATA sequence-binding
protein 1) [Arabidopsis thaliana]
gi|39545928|gb|AAR28027.1| TBP1 [Arabidopsis thaliana]
gi|225898637|dbj|BAH30449.1| hypothetical protein [Arabidopsis thaliana]
gi|332641834|gb|AEE75355.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|227074|prf||1613452B transcription initiation factor TFIID-2
Length = 200
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E K+A+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ FSSYEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 137 HAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKI 170
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E K+A+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 147 LFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEF 195
>gi|349602909|gb|AEP98902.1| TATA-box-binding protein-like protein, partial [Equus caballus]
Length = 169
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/140 (55%), Positives = 107/140 (76%)
Query: 133 TISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E
Sbjct: 1 AVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQS 60
Query: 193 KLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPG 252
+LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEPELFPG
Sbjct: 61 RLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPG 120
Query: 253 LIYRMVKPRVVLLIFVNGRI 272
LIYRM+KPR+VLLIFV+G++
Sbjct: 121 LIYRMIKPRIVLLIFVSGKV 140
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 44 TISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 103
+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E
Sbjct: 1 AVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQS 60
Query: 104 KLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHG 161
+LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++S Y P F G
Sbjct: 61 RLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPG 120
Query: 162 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
LI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 121 LIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 163
>gi|217075458|gb|ACJ86089.1| unknown [Medicago truncatula]
gi|388502544|gb|AFK39338.1| unknown [Medicago truncatula]
gi|388506912|gb|AFK41522.1| unknown [Medicago truncatula]
Length = 200
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P K++ FKI N+V +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEVQSKLAARKYARIIQKLGFPAKFKDFKIQNVVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGTFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EVQSKLAARKYARIIQKLGFPAKFKDFKIQNVVGSCDVKFPIRLEGLAYSHGTFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|395843435|ref|XP_003794490.1| PREDICTED: TATA box-binding protein-like protein 2 [Otolemur
garnettii]
Length = 364
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V TI++ C LDL +I R + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 191 LQNIVCTINLACKLDLREIALRAKNTEYNPQRFSAVIMRIREPRTTALIFSSGKIVCTGA 250
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RKFA+++++LG P ++ FKIHN+V +CDV FP++L+ L H QF SYE
Sbjct: 251 KSEEQSRLAARKFARVVQKLGFPARFLDFKIHNMVGSCDVGFPIRLEGLVLAHQQFCSYE 310
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPRVV+LIFV+G++
Sbjct: 311 PELFPGLIYRMVKPRVVVLIFVSGKV 336
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V TI++ C LDL +I R + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 193 NIVCTINLACKLDLREIALRAKNTEYNPQRFSAVIMRIREPRTTALIFSSGKIVCTGAKS 252
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RKFA+++++LG P + F NMVG+ VG P+ L + + ++ Y P
Sbjct: 253 EEQSRLAARKFARVVQKLGFPARFLDFKIHNMVGSCDVGFPIRLEGLVLAHQQFCSYEPE 312
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 313 LFPGLIYRMVKPRVVVLIFVSGKVVLAGAKKRSEIYEAFENIYSILK 359
>gi|392870835|gb|EAS32669.2| TATA-box-binding protein [Coccidioides immitis RS]
Length = 299
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 126 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 185
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 186 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 245
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 246 PELFPGLIYRMMKPKIVLLIFVSGKI 271
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 128 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 187
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 188 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 247
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 248 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 277
>gi|390333257|ref|XP_795391.3| PREDICTED: TATA-box-binding protein-like [Strongylocentrotus
purpuratus]
Length = 262
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 88 LQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 147
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+++++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 148 KSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 207
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 208 PELFPGLIYRMVKPRIVLLIFVSGKV 233
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 90 NIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 149
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+++++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 150 EDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 209
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 210 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSF 258
>gi|302663669|ref|XP_003023473.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
gi|291187474|gb|EFE42855.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
Length = 275
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 203
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 204 PELFPGLIYRMMKPKIVLLIFVSGKI 229
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Query: 13 GSACIGGGQACFCLIRGGQKNRRG---TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGK 69
GS GG A G G T N+V T+++ C LDL I R +EYNP +
Sbjct: 56 GSGPGGGTPATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKR 115
Query: 70 FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFR 128
F +IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F +
Sbjct: 116 FAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQ 175
Query: 129 NMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 176 NIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 235
>gi|20799106|dbj|BAB92075.1| TATA binding protein [Hemicentrotus pulcherrimus]
Length = 250
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 76 LQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 135
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+++++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 136 KSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 195
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 196 PELFPGLIYRMVKPRIVLLIFVSGKV 221
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 78 NIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 137
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+++++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 138 EDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 197
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 198 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSF 246
>gi|326471025|gb|EGD95034.1| TATA-box-binding protein [Trichophyton tonsurans CBS 112818]
Length = 257
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 143
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 203
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 204 PELFPGLIYRMMKPKIVLLIFVSGKI 229
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Query: 13 GSACIGGGQACFCLIRGGQKNRRG---TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGK 69
GS GG A G G T N+V T+++ C LDL I R +EYNP +
Sbjct: 56 GSGPGGGTPATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKR 115
Query: 70 FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFR 128
F +IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F +
Sbjct: 116 FAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQ 175
Query: 129 NMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 176 NIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 235
>gi|79313217|ref|NP_001030688.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|332641835|gb|AEE75356.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
Length = 196
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E K+A+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ FSSYEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 137 HAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKI 170
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E K+A+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI ++ P+ L F SGK++I GAK
Sbjct: 147 LFPGLIYRMKVPKIVLLIFVSGKIVITGAK 176
>gi|339961157|pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
gi|339961158|pdb|1VTL|F Chain F, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
Length = 186
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 5 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 64
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E K+A+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 65 GKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 124
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ FSSYEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 125 HAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKI 158
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 15 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 74
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E K+A+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 75 EDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPE 134
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 135 LFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEF 183
>gi|222617361|gb|EEE53493.1| hypothetical protein OsJ_36653 [Oryza sativa Japonica Group]
Length = 225
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 25 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 84
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 85 GKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 144
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 145 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 178
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 35 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 94
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 95 EQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 154
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 155 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 203
>gi|380491274|emb|CCF35436.1| TATA-box-binding protein [Colletotrichum higginsianum]
Length = 304
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 85 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 144
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 145 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 204
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 205 PELFPGLIYRMIKPKIVLLIFVSGKI 230
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 87 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 146
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 147 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 206
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
F GLI +++ P+ L F SGK+++ GAK + A +L+ P Y +
Sbjct: 207 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQGQYRP--YHFSSL 264
Query: 218 HNIVCTCDVRFPVKLDAL 235
H + RFP + L
Sbjct: 265 HQLTV---ARFPQSIKVL 279
>gi|339961162|pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
gi|339961163|pdb|1VTO|B Chain B, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
Length = 190
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 7 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 66
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E K+A+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 67 GKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 126
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ FSSYEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 127 HAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKI 160
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 17 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 76
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E K+A+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 77 EDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPE 136
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 137 LFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEF 185
>gi|154284482|ref|XP_001543036.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
gi|150406677|gb|EDN02218.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
Length = 268
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 89 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 148
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLAS+K+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYE
Sbjct: 149 KSEDDSKLASKKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYE 208
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 209 PELFPGLIYRMMKPKIVLLIFVSGKI 234
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 91 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 150
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D KLAS+K+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 151 EDDSKLASKKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 210
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 211 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTE 258
>gi|405952231|gb|EKC20068.1| TATA-box-binding protein [Crassostrea gigas]
Length = 452
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 99 LQNIVCTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 158
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E KLA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 159 KSEDQAKLAARKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 218
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 219 PELFPGLIYRMVKPRIVLLIFVSGKV 244
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 102/161 (63%), Gaps = 5/161 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 101 NIVCTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 160
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E KLA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 161 EDQAKLAARKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 220
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRK 198
F GLI +++ PR L F SGK+++ GAK D + A R+
Sbjct: 221 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAK---DWEYAMRR 258
>gi|195425556|ref|XP_002061064.1| GK10649 [Drosophila willistoni]
gi|194157149|gb|EDW72050.1| GK10649 [Drosophila willistoni]
Length = 351
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 177 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 236
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 237 KSEDDSRLAARKYARIIQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 296
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 297 PELFPGLIYRMVRPRIVLLIFVSGKV 322
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 179 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 238
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 239 EDDSRLAARKYARIIQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 298
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 299 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 347
>gi|388512865|gb|AFK44494.1| unknown [Lotus japonicus]
Length = 200
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C L+L I + R +E+NP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEFNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E +LA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEEQSRLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I + R +E+NP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLELKSIALQARNAEFNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E +LA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EEQSRLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF 195
>gi|308467285|ref|XP_003095891.1| CRE-TBP-1 protein [Caenorhabditis remanei]
gi|308244262|gb|EFO88214.1| CRE-TBP-1 protein [Caenorhabditis remanei]
Length = 338
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 113/152 (74%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
+I +N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK
Sbjct: 160 DIPMPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 219
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
++ GAK E +LA+RK+A+I+++LG K+ F + N+V +CDVRFP++L+ L H+
Sbjct: 220 MVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHA 279
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFS+YEPELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 280 QFSTYEPELFPGLIYRMVKPRVVLLIFVSGKV 311
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 168 NIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 227
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 228 EEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYEPE 287
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK++I GAK + D A + ILK
Sbjct: 288 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILK 334
>gi|135634|sp|P26354.1|TBP_ACACA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|5593|emb|CAA44843.1| TFIID [Acanthamoeba castellanii]
gi|155636|gb|AAA27712.1| transcription factor [Acanthamoeba castellanii]
gi|155638|gb|AAA27713.1| TFIID [Acanthamoeba castellanii]
gi|440795312|gb|ELR16441.1| TATAbox-binding protein [Acanthamoeba castellanii str. Neff]
Length = 258
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 116/167 (69%)
Query: 106 ASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMK 165
AS + + HP I +N+V T+++GC LDL I R +EYNP +F +IM+
Sbjct: 64 ASDDMDSDVDRTKHPSGIVPTLQNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMR 123
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 225
I P+TT L F SGK++ GAK E +LA+RK+A+I+++LG K+ FKI NIV +CD
Sbjct: 124 IREPKTTALIFASGKMVCTGAKSEEASRLAARKYARIIQKLGFAAKFLDFKIQNIVGSCD 183
Query: 226 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
VRFP++L+ L H+ + SYEPELFPGLIYRMV+P++VLLIFV+G+I
Sbjct: 184 VRFPIRLEGLAFAHNHYCSYEPELFPGLIYRMVQPKIVLLIFVSGKI 230
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 87 NIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 146
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E +LA+RK+A+I+++LG + + F +N+VG+ V P+ L + + Y Y P
Sbjct: 147 EEASRLAARKYARIIQKLGFAAKFLDFKIQNIVGSCDVRFPIRLEGLAFAHNHYCSYEPE 206
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 207 LFPGLIYRMVQPKIVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLTE 254
>gi|268575218|ref|XP_002642588.1| C. briggsae CBR-TBP-1 protein [Caenorhabditis briggsae]
Length = 337
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 113/152 (74%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
+I +N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK
Sbjct: 159 DIPMPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 218
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
++ GAK E +LA+RK+A+I+++LG K+ F + N+V +CDVRFP++L+ L H+
Sbjct: 219 MVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHA 278
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFS+YEPELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 279 QFSTYEPELFPGLIYRMVKPRVVLLIFVSGKV 310
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 167 NIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 226
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 227 EEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYEPE 286
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK++I GAK + D A + ILK
Sbjct: 287 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILK 333
>gi|125807343|ref|XP_001360369.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|195149788|ref|XP_002015837.1| GL11271 [Drosophila persimilis]
gi|54635541|gb|EAL24944.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|194109684|gb|EDW31727.1| GL11271 [Drosophila persimilis]
Length = 345
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 171 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 230
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 231 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 290
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 291 PELFPGLIYRMVRPRIVLLIFVSGKV 316
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 173 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 232
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 233 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 292
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 293 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 341
>gi|396467023|ref|XP_003837823.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
gi|312214387|emb|CBX94379.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
Length = 246
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 111/153 (72%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 66 PSGIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASG 125
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 126 KMVVTGAKSEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 185
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 186 HTFSSYEPELFPGLIYRMMKPKIVLLIFVSGKI 218
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 75 NIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAKS 134
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D +LASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 135 EDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHTFSSYEPE 194
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 195 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 224
>gi|169606198|ref|XP_001796519.1| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
gi|160706937|gb|EAT85966.2| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
Length = 247
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 111/153 (72%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P I +N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SG
Sbjct: 67 PSGIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASG 126
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
K+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 127 KMVVTGAKSEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 186
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 187 HTFSSYEPELFPGLIYRMMKPKIVLLIFVSGKI 219
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 76 NIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAKS 135
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E D +LASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P
Sbjct: 136 EDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHTFSSYEPE 195
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++ P+ L F SGK+++ GAK
Sbjct: 196 LFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 225
>gi|168003287|ref|XP_001754344.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162694446|gb|EDQ80794.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 214
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNMDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG P +++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYA 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 10/190 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNMDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG P + F +N+VG+ V P+ L + + +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
F GLI ++ P+ L F SGK+++ GAK + A F I +P+ + KI
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEA---FENI-----YPVLTEFRKI 198
Query: 218 HNIVCTCDVR 227
TC V
Sbjct: 199 QQWYVTCMVE 208
>gi|440902256|gb|ELR53068.1| TATA-box-binding protein, partial [Bos grunniens mutus]
Length = 247
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 109/144 (75%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T+++GC LDL I R +EYNP +F +IM+I PRTT L F SGK++ G K
Sbjct: 92 NVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCTGGKS 151
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QF+SYEPE
Sbjct: 152 EEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEPLVLSHQQFASYEPE 211
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGL+YRM+KPR+VLLIFV+G++
Sbjct: 212 LFPGLVYRMIKPRIVLLIFVSGKV 235
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R +EYNP +F +IM+I PRTT L F SGK++ G K
Sbjct: 92 NVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCTGGKS 151
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + S +++ Y P
Sbjct: 152 EEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEPLVLSHQQFASYEPE 211
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GL+ +++ PR L F SGK+++ GAK
Sbjct: 212 LFPGLVYRMIKPRIVLLIFVSGKVVLTGAK 241
>gi|3599497|gb|AAC35362.1| TATA-binding protein [Lytechinus variegatus]
Length = 271
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 97 LQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 156
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+++++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 157 KSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 216
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 217 PELFPGLIYRMVKPRIVLLIFVSGKV 242
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 99 NIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 158
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+++++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 159 EDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 218
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 219 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSF 267
>gi|195585514|ref|XP_002082526.1| GD25175 [Drosophila simulans]
gi|194194535|gb|EDX08111.1| GD25175 [Drosophila simulans]
Length = 352
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 178 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 237
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 238 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 297
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 298 PELFPGLIYRMVRPRIVLLIFVSGKV 323
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 180 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 239
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 240 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 299
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 300 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 348
>gi|194881988|ref|XP_001975095.1| GG20753 [Drosophila erecta]
gi|190658282|gb|EDV55495.1| GG20753 [Drosophila erecta]
Length = 349
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 175 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 234
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 235 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 294
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 295 PELFPGLIYRMVRPRIVLLIFVSGKV 320
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 177 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 236
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 237 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 296
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 297 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 345
>gi|242034379|ref|XP_002464584.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
gi|241918438|gb|EER91582.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
Length = 218
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 35 HPSGIVPALQNIVSTVNLDCQLDLKMIALQARNAEYNPKRFAAVIMRIREPKTTALVFAS 94
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG+P K++ FKI N+V +CDV+FP++L+ L
Sbjct: 95 GKMVCTGAKSEEHSKLAARKYARIVQKLGYPAKFKDFKIQNMVGSCDVKFPIRLEGLAFS 154
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FS+YEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 155 HGAFSNYEPELFPGLIYRMKNPKIVLLIFVSGKI 188
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 45 NIVSTVNLDCQLDLKMIALQARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVCTGAKS 104
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG+P + F +NMVG+ V P+ L + S +S Y P
Sbjct: 105 EEHSKLAARKYARIVQKLGYPAKFKDFKIQNMVGSCDVKFPIRLEGLAFSHGAFSNYEPE 164
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI ++ NP+ L F SGK+++ GAK + A +L +
Sbjct: 165 LFPGLIYRMKNPKIVLLIFVSGKIVLTGAKVREEIYTAFENIYPVLTE 212
>gi|218187146|gb|EEC69573.1| hypothetical protein OsI_38882 [Oryza sativa Indica Group]
Length = 221
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 21 HPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 80
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 81 GKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 140
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G++
Sbjct: 141 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKL 174
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 31 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 90
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 91 EQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 150
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGKL++ GAK + A +L +
Sbjct: 151 LFPGLIYRMKQPKIVLLIFVSGKLVLTGAKVRDETYTAFENIYPVLTEF 199
>gi|1016266|gb|AAA79092.1| TATA-box binding protein [Drosophila melanogaster]
Length = 354
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 180 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 239
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 240 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 299
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 300 PELFPGLIYRMVRPRIVLLIFVSGKV 325
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 182 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 241
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 242 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 301
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 302 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 350
>gi|291403917|ref|XP_002718356.1| PREDICTED: TATA box binding protein like 2-like [Oryctolagus
cuniculus]
Length = 345
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 171 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 230
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SSY 245
K E +LA+RK+A+++++LG+P ++ FKI N+V +CDVRFP++L+ L H QF SSY
Sbjct: 231 KSEEQSRLAARKYARVVQKLGYPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSSY 290
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 291 EPELFPGLIYRMVKPRIVLLIFVSGKV 317
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 173 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 232
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYNP 156
E +LA+RK+A+++++LG+P + F +NMVG+ V P+ L + + S Y P
Sbjct: 233 EEQSRLAARKYARVVQKLGYPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSSYEP 292
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 293 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 340
>gi|17647997|ref|NP_523805.1| TATA binding protein [Drosophila melanogaster]
gi|135636|sp|P20227.1|TBP_DROME RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|158532|gb|AAA28926.1| TATA-consensus-binding transcription factor TFII [Drosophila
melanogaster]
gi|158542|gb|AAA28931.1| TATA-box binding protein [Drosophila melanogaster]
gi|515665|gb|AAA68629.1| TATA-box binding protein [Drosophila melanogaster]
gi|7291324|gb|AAF46754.1| TATA binding protein [Drosophila melanogaster]
gi|17862662|gb|AAL39808.1| LD44083p [Drosophila melanogaster]
gi|220942262|gb|ACL83674.1| Tbp-PA [synthetic construct]
gi|220952470|gb|ACL88778.1| Tbp-PA [synthetic construct]
Length = 353
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 239 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 298
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 299 PELFPGLIYRMVRPRIVLLIFVSGKV 324
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 181 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 240
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 241 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 300
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 301 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 349
>gi|195403015|ref|XP_002060091.1| GJ14917 [Drosophila virilis]
gi|194149413|gb|EDW65108.1| GJ14917 [Drosophila virilis]
Length = 352
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 178 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 237
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 238 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 297
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 298 PELFPGLIYRMVRPRIVLLIFVSGKV 323
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 180 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 239
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 240 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 299
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 300 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 348
>gi|296215093|ref|XP_002807283.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Callithrix jacchus]
Length = 373
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 200 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 259
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ E +LA+RK+A+++++LG P ++ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 260 RSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 319
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 320 PELFPGLIYRMVKPRIVLLIFVSGKV 345
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA+
Sbjct: 202 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGARS 261
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 262 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 321
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 322 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEICEAFENIYPILK 368
>gi|195380351|ref|XP_002048934.1| Tbp [Drosophila virilis]
gi|194143731|gb|EDW60127.1| Tbp [Drosophila virilis]
Length = 351
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 177 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 236
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 237 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 296
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 297 PELFPGLIYRMVRPRIVLLIFVSGKV 322
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 179 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 238
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 239 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 298
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 299 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 347
>gi|443688559|gb|ELT91221.1| hypothetical protein CAPTEDRAFT_209597 [Capitella teleta]
Length = 209
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 36 LQNIVCTVNMACKLELKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 95
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E KLA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L HSQFSSYE
Sbjct: 96 KSEDQAKLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYE 155
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 156 PELFPGLIYRMVKPRIVLLIFVSGKV 181
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 38 NIVCTVNMACKLELKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 97
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E KLA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 98 EDQAKLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPE 157
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 158 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILK 204
>gi|195486396|ref|XP_002091492.1| GE13685 [Drosophila yakuba]
gi|194177593|gb|EDW91204.1| GE13685 [Drosophila yakuba]
Length = 349
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 175 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 234
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 235 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 294
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 295 PELFPGLIYRMVRPRIVLLIFVSGKV 320
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 177 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 236
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 237 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 296
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 297 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 345
>gi|194755930|ref|XP_001960232.1| GF11627 [Drosophila ananassae]
gi|190621530|gb|EDV37054.1| GF11627 [Drosophila ananassae]
Length = 348
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 174 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 233
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 234 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 293
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 294 PELFPGLIYRMVRPRIVLLIFVSGKV 319
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 176 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 235
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 236 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 295
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 296 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 344
>gi|195057981|ref|XP_001995362.1| GH23121 [Drosophila grimshawi]
gi|193899568|gb|EDV98434.1| GH23121 [Drosophila grimshawi]
Length = 348
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 174 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 233
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 234 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 293
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 294 PELFPGLIYRMVRPRIVLLIFVSGKV 319
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 176 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 235
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 236 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 295
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 296 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 344
>gi|255728115|ref|XP_002548983.1| TATA-box binding protein [Candida tropicalis MYA-3404]
gi|240133299|gb|EER32855.1| TATA-box binding protein [Candida tropicalis MYA-3404]
Length = 257
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 143
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV + DV+F ++L+ L H FSSYE
Sbjct: 144 KSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYE 203
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 204 PELFPGLIYRMVKPKIVLLIFVSGKI 229
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 86 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 145
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V + L + + +S Y P
Sbjct: 146 EDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPE 205
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 206 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEF 254
>gi|297695161|ref|XP_002824816.1| PREDICTED: TATA box-binding protein-like protein 2 [Pongo abelii]
Length = 375
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF ++L+ L H QFSSYE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYE 321
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKV 347
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 204 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 263
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V + L + + ++S Y P
Sbjct: 264 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYEPE 323
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 324 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 370
>gi|302773061|ref|XP_002969948.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
gi|302799318|ref|XP_002981418.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300150958|gb|EFJ17606.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300162459|gb|EFJ29072.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
Length = 196
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F S
Sbjct: 13 HPSGIVPTLQNIVATVNMDCKLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 72
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E +C+LA+RK+A+I+++LG P +++ FKI NIV +CDVRFP++L+ L
Sbjct: 73 GKMVCTGAKSEQNCRLAARKYARIIQKLGFPSQFKDFKIQNIVGSCDVRFPIRLEGLAFS 132
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FS+YEPE+FPGLIYRM +P++VLLIFV+G+I
Sbjct: 133 HGHFSTYEPEIFPGLIYRMKQPKIVLLIFVSGKI 166
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 23 NIVATVNMDCKLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 82
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E +C+LA+RK+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 83 EQNCRLAARKYARIIQKLGFPSQFKDFKIQNIVGSCDVRFPIRLEGLAFSHGHFSTYEPE 142
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ GAK + A +L +
Sbjct: 143 IFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLAEF 191
>gi|296482511|tpg|DAA24626.1| TPA: TBP protein-like [Bos taurus]
Length = 303
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 109/144 (75%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T+++GC LDL I R +EYNP +F +IM+I PRTT L F SGK++ G K
Sbjct: 131 NVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCTGGKS 190
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QF+SYEPE
Sbjct: 191 EEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEPLVLSHQQFASYEPE 250
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGL+YRM+KPR+VLLIFV+G++
Sbjct: 251 LFPGLVYRMIKPRIVLLIFVSGKV 274
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R +EYNP +F +IM+I PRTT L F SGK++ G K
Sbjct: 131 NVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCTGGKS 190
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + S +++ Y P
Sbjct: 191 EEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEPLVLSHQQFASYEPE 250
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GL+ +++ PR L F SGK+++ GAK + A ILK
Sbjct: 251 LFPGLVYRMIKPRIVLLIFVSGKVVLTGAKVRSEIYEAFNNIYSILK 297
>gi|149039452|gb|EDL93672.1| rCG45623 [Rattus norvegicus]
Length = 190
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 17 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGA 76
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 77 KSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSYE 136
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIY+MVKP+VVLLIF +G++
Sbjct: 137 PELFPGLIYKMVKPQVVLLIFASGKV 162
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 4/170 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 19 NVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKS 78
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E + +LA+RK+A+++++LG P + FF F+ NMV + V P+ L + + ++S Y P
Sbjct: 79 EDESRLAARKYARVVQKLGFP-VRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSYEP 137
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI K++ P+ L F SGK+++ GAK + A IL+
Sbjct: 138 ELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESF 187
>gi|302833409|ref|XP_002948268.1| TATA-box binding protein [Volvox carteri f. nagariensis]
gi|300266488|gb|EFJ50675.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 338
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GA
Sbjct: 12 LQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D + A+R++AKI+++LG P ++ FKI NIV +CDV+FP++L+ L + HS F+SYE
Sbjct: 72 KSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYE 131
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM +P++VLLIFV+G++
Sbjct: 132 PELFPGLIYRMKQPKIVLLIFVSGKV 157
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 14 NVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D + A+R++AKI+++LG P F +N+VG+ V P+ L + + ++ Y P
Sbjct: 74 EDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYEPE 133
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI ++ P+ L F SGK+++ GAK ++
Sbjct: 134 LFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYE 167
>gi|297829888|ref|XP_002882826.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
gi|297328666|gb|EFH59085.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
Length = 200
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E+ K+A+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEYFSKMAARKYARIVQKLGFSAKFKDFKIQNIVGSCDVKFPIRLEGLAYS 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ FSSYEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 137 HAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKI 170
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E+ K+A+RK+A+I+++LG + F +N+VG+ V P+ L + S +S Y P
Sbjct: 87 EYFSKMAARKYARIVQKLGFSAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK++I GAK + A +L +
Sbjct: 147 LFPGLIYRMKVPKIVLLIFVSGKIVITGAKMREETYRAFENIYPVLTEF 195
>gi|168052908|ref|XP_001778881.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162669750|gb|EDQ56331.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 200
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL +I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 HPSGIIPTLQNIVSTVNMDCRLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++LG ++ FKI NIV +CDV+FP++L+ L +
Sbjct: 77 GKMVCTGAKSEQQSKLAARKYARIIQKLGFQAHFKDFKIQNIVGSCDVKFPIRLEGLAYA 136
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 137 HGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 170
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 NIVSTVNMDCRLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E KLA+RK+A+I+++LG F +N+VG+ V P+ L + + +S Y P
Sbjct: 87 EQQSKLAARKYARIIQKLGFQAHFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI ++ P+ L F SGK+++ GAK
Sbjct: 147 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
>gi|341900545|gb|EGT56480.1| CBN-TBP-1 protein [Caenorhabditis brenneri]
Length = 337
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
H EI +N+V T+++G LDL +I R +EYNP +F +IM+I PRTT L F S
Sbjct: 157 HMEIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 216
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E +LA+RK+A+I+++LG K+ F + N+V +CDVRFP++L+ L
Sbjct: 217 GKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCIT 276
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+QFS+YEPELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 277 HAQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKV 310
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 167 NIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 226
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 227 EEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYEPE 286
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK++I GAK + D A + ILK
Sbjct: 287 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILK 333
>gi|47551211|ref|NP_999786.1| TATA-box-binding protein [Strongylocentrotus purpuratus]
gi|3122940|sp|P91809.1|TBP_STRPU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1840134|gb|AAB47272.1| TATA binding protein [Strongylocentrotus purpuratus]
Length = 265
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 91 LQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 150
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + +LA+RK+A+++++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 151 KREDNSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 210
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 211 PELFPGLIYRMVKPRIVLLIFVSGKV 236
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 93 NIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKR 152
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E + +LA+RK+A+++++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 153 EDNSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 212
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 213 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSF 261
>gi|338726931|ref|XP_001496050.2| PREDICTED: TATA box-binding protein-like protein 2-like [Equus
caballus]
Length = 555
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++ C LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 382 LQNVVSTANLACKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKIVCTGA 441
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ E +LA+RKFA+++++LG P ++ FKI N+V +CDVRFP++L+ L H QF SYE
Sbjct: 442 RSEEQSRLAARKFARVIQKLGFPARFLDFKIQNLVGSCDVRFPIRLEGLVLTHQQFCSYE 501
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV PRVVLLIFV+G++
Sbjct: 502 PELFPGLIYRMVNPRVVLLIFVSGKV 527
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GA+
Sbjct: 384 NVVSTANLACKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKIVCTGARS 443
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RKFA+++++LG P + F +N+VG+ V P+ L + + ++ Y P
Sbjct: 444 EEQSRLAARKFARVIQKLGFPARFLDFKIQNLVGSCDVRFPIRLEGLVLTHQQFCSYEPE 503
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++NPR L F SGK+++ GAK + A + ILK
Sbjct: 504 LFPGLIYRMVNPRVVLLIFVSGKVVLTGAKERSEIYEAFKNIYPILK 550
>gi|150247085|ref|NP_001092831.1| TATA box-binding protein-like protein 2 [Rattus norvegicus]
gi|166987367|sp|A6H909.1|TBPL2_RAT RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910847|tpg|DAA06034.1| TPA_inf: TATA box binding protein-like 2 [Rattus norvegicus]
Length = 344
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 171 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGA 230
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 231 KSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSYE 290
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIY+MVKP+VVLLIF +G++
Sbjct: 291 PELFPGLIYKMVKPQVVLLIFASGKV 316
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 173 NVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKS 232
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E + +LA+RK+A+++++LG P + FF F+ NMV + V P+ L + + ++S Y P
Sbjct: 233 EDESRLAARKYARVVQKLGFP-VRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSYEP 291
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI K++ P+ L F SGK+++ GAK + A IL+
Sbjct: 292 ELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILE 339
>gi|335280289|ref|XP_001924325.3| PREDICTED: TATA box-binding protein-like protein 2-like [Sus
scrofa]
Length = 379
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP + +IM+I PRTT L F SGK++ GA
Sbjct: 206 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRLAAVIMRIREPRTTALIFSSGKMVCTGA 265
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LASRK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H +FSSYE
Sbjct: 266 KSEEQSRLASRKYARVVQKLGFPARFLNFKIQNMVGSCDVRFPIRLEGLVLTHPEFSSYE 325
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G++
Sbjct: 326 PELFPGLIYRMVKPQIVLLIFVSGKV 351
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP + +IM+I PRTT L F SGK++ GAK
Sbjct: 208 NIVSTVNLACKLDLKKIALHAKNAEYNPKRLAAVIMRIREPRTTALIFSSGKMVCTGAKS 267
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LASRK+A+++++LG P + F +NMVG+ V P+ L + + +S Y P
Sbjct: 268 EEQSRLASRKYARVVQKLGFPARFLNFKIQNMVGSCDVRFPIRLEGLVLTHPEFSSYEPE 327
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI +++ P+ L F SGK+++ GAK + A ILK
Sbjct: 328 LFPGLIYRMVKPQIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKD 375
>gi|330846314|ref|XP_003294984.1| TATA-binding protein [Dictyostelium purpureum]
gi|325074431|gb|EGC28489.1| TATA-binding protein [Dictyostelium purpureum]
Length = 224
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F+S
Sbjct: 37 HPSGIIPTLQNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKS 96
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E K A+RK+A+I+++L P ++ FKI NIV +CDV+FP+KL+ LH+
Sbjct: 97 GKMVCTGAKSEDASKYAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNA 156
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ F++YEPE+FPGLIY+M++P+VVLLIFV+G+I
Sbjct: 157 HTSFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKI 190
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 47 NIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGAKS 106
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E K A+RK+A+I+++L P F +N+VG+ V P+ L + N+ ++ Y P
Sbjct: 107 EDASKYAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYEPE 166
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI K++ P+ L F SGK+++ GAK +
Sbjct: 167 IFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREE 200
>gi|195122370|ref|XP_002005684.1| GI18943 [Drosophila mojavensis]
gi|193910752|gb|EDW09619.1| GI18943 [Drosophila mojavensis]
Length = 348
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 174 LQNIVSTVNLCCKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 233
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 234 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 293
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 294 PELFPGLIYRMVRPRIVLLIFVSGKV 319
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 176 NIVSTVNLCCKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 235
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 236 EDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 295
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 296 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 344
>gi|384245994|gb|EIE19486.1| TBP-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GA
Sbjct: 30 LQNIVATVNLDCKLDLKTIAQKARNAEYNPKRFAAVIMRIRDPKTTALVFASGKMVCTGA 89
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + A+RK+AKI+++L P ++ FKI NIV +CDV+FP++L+ L++ H FSSYE
Sbjct: 90 KSEEHARTAARKYAKIIQKLDFPATFKDFKIQNIVGSCDVKFPIRLEGLNYSHGMFSSYE 149
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM +P+VVLLIFV+G++
Sbjct: 150 PELFPGLIYRMKEPKVVLLIFVSGKV 175
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 32 NIVATVNLDCKLDLKTIAQKARNAEYNPKRFAAVIMRIRDPKTTALVFASGKMVCTGAKS 91
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E + A+RK+AKI+++L P F +N+VG+ V P+ L +N S +S Y P
Sbjct: 92 EEHARTAARKYAKIIQKLDFPATFKDFKIQNIVGSCDVKFPIRLEGLNYSHGMFSSYEPE 151
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ G K D A +L++
Sbjct: 152 LFPGLIYRMKEPKVVLLIFVSGKVVLTGGKKREDIYEAFESIYPVLQEF 200
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ V P+ L +N S +S Y P F GLI ++ P+ L F SGK+++ G K
Sbjct: 122 NIVGSCDVKFPIRLEGLNYSHGMFSSYEPELFPGLIYRMKEPKVVLLIFVSGKVVLTGGK 181
Query: 99 HEHDCKLASRKFAKILKQLGHPEII 123
D A +L++ E +
Sbjct: 182 KREDIYEAFESIYPVLQEFRKGEAV 206
>gi|431895824|gb|ELK05242.1| TATA box-binding protein-like protein 2 [Pteropus alecto]
Length = 342
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 169 LQNIVSTANLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 228
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF ++L+ L H QFSSYE
Sbjct: 229 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYE 288
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 289 PELFPGLIYRMVKPRIVLLIFVSGKV 314
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 171 NIVSTANLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 230
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V + L + + ++S Y P
Sbjct: 231 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYEPE 290
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 291 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 337
>gi|238878530|gb|EEQ42168.1| TATA-box binding protein [Candida albicans WO-1]
Length = 238
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 124
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV + DV+F ++L+ L H FSSYE
Sbjct: 125 KSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYE 184
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 185 PELFPGLIYRMVKPKIVLLIFVSGKI 210
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 67 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 126
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V + L + + +S Y P
Sbjct: 127 EDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPE 186
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 187 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEF 235
>gi|68490865|ref|XP_710759.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
gi|68490947|ref|XP_710721.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|3334374|sp|O43133.1|TBP_CANAL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2708495|gb|AAC49985.1| TATA-binding protein [Candida albicans]
gi|2708497|gb|AAC49986.1| TATA-binding protein [Candida albicans]
gi|46431958|gb|EAK91473.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|46432000|gb|EAK91511.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
Length = 238
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 124
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV + DV+F ++L+ L H FSSYE
Sbjct: 125 KSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYE 184
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 185 PELFPGLIYRMVKPKIVLLIFVSGKI 210
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 67 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 126
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V + L + + +S Y P
Sbjct: 127 EDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPE 186
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 187 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREE 220
>gi|148676212|gb|EDL08159.1| TBP-related factor 3 [Mus musculus]
Length = 208
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 35 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGA 94
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 95 KSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSYE 154
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIY+MVKP+VVLLIF +G++
Sbjct: 155 PELFPGLIYKMVKPQVVLLIFASGKV 180
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 4/170 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 37 NVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKS 96
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E + +LA+RK+A+++++LG P + FF F+ NMVG+ V P+ L + + ++S Y P
Sbjct: 97 EEESRLAARKYARVVQKLGFP-VRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSYEP 155
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI K++ P+ L F SGK+++ GAK + A IL+
Sbjct: 156 ELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESF 205
>gi|229577173|ref|NP_001153317.1| TATA binding protein [Nasonia vitripennis]
Length = 306
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 111/145 (76%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T+++ LDL +I R +E+ P +F +IM+I PRTT L F SGK++ GAK
Sbjct: 134 QNIVSTVNLNGKLDLKKIALHARNAEFIPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 193
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H+QFSSYEP
Sbjct: 194 SEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEP 253
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 254 ELFPGLIYRMVKPRIVLLIFVSGKV 278
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL +I R +E+ P +F +IM+I PRTT L F SGK++ GAK
Sbjct: 135 NIVSTVNLNGKLDLKKIALHARNAEFIPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 194
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 195 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPE 254
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 255 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILK 301
>gi|241949839|ref|XP_002417642.1| TATA sequence-binding protein, putative; TATA-binding factor,
putative; TATA-box binding protein, putative; TATA-box
factor, putative; transcription initiation factor tfIID
TBP subunit, putative [Candida dubliniensis CD36]
gi|223640980|emb|CAX45328.1| TATA sequence-binding protein, putative [Candida dubliniensis CD36]
Length = 233
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 60 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 119
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D KLASRK+A+I+++LG K+ FKI NIV + DV+F ++L+ L H FSSYE
Sbjct: 120 KSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYE 179
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 180 PELFPGLIYRMVKPKIVLLIFVSGKI 205
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 62 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 121
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D KLASRK+A+I+++LG + + F +N+VG+ V + L + + +S Y P
Sbjct: 122 EDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPE 181
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L +
Sbjct: 182 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEF 230
>gi|348573495|ref|XP_003472526.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cavia
porcellus]
Length = 397
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 224 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 283
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF ++L+ L H QFSSYE
Sbjct: 284 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYE 343
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 344 PELFPGLIYRMVKPRIVLLIFVSGKV 369
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 226 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 285
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V + L + + ++S Y P
Sbjct: 286 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYEPE 345
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 346 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 392
>gi|449543430|gb|EMD34406.1| hypothetical protein CERSUDRAFT_97665 [Ceriporiopsis subvermispora
B]
Length = 338
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 113/156 (72%), Gaps = 10/156 (6%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPG----------KFHGLIMKILNPRTTCLAF 176
+N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F
Sbjct: 142 LQNIVATVNLDCRLDLKTIALHARNAEYNPKWPDFRVCALQRFAAVIMRIRDPKTTALIF 201
Query: 177 QSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH 236
SGK+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L
Sbjct: 202 ASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLA 261
Query: 237 HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ H QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 262 YSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKI 297
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 12/160 (7%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPG----------KFHGLIMKILNPRTTCLAFQS 89
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F S
Sbjct: 144 NIVATVNLDCRLDLKTIALHARNAEYNPKWPDFRVCALQRFAAVIMRIRDPKTTALIFAS 203
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-S 147
GK+++ GAK E D +LASRK+A+I+++LG + F +N+VG+ V P+ L + S
Sbjct: 204 GKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYS 263
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
++S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 264 HGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAK 303
>gi|17555358|ref|NP_498635.1| Protein TBP-1 [Caenorhabditis elegans]
gi|417896|sp|P32085.1|TBP_CAEEL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|12275988|gb|AAG50207.1|AF303249_1 transcription factor TFIID [Caenorhabditis elegans]
gi|156448|gb|AAA03582.1| TATA-box binding protein [Caenorhabditis elegans]
gi|351061293|emb|CCD69071.1| Protein TBP-1 [Caenorhabditis elegans]
Length = 340
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 112/152 (73%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
+I +N+V T+++G LDL +I R +EYNP +F +IM+I PRTT L F SGK
Sbjct: 162 DIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 221
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
++ GAK E +LA+RK+A+I+++LG K+ F + N+V +CDVRFP++L+ L HS
Sbjct: 222 MVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHS 281
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
QFS+YEPELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 282 QFSTYEPELFPGLIYRMVKPRVVLLIFVSGKV 313
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 170 NIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 229
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E +LA+RK+A+I+++LG + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 230 EEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYEPE 289
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK++I GAK + D A + ILK
Sbjct: 290 LFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKRDIDEAFGQIYPILK 336
>gi|159465587|ref|XP_001691004.1| global transcription factor [Chlamydomonas reinhardtii]
gi|158279690|gb|EDP05450.1| global transcription factor [Chlamydomonas reinhardtii]
Length = 325
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GA
Sbjct: 33 LQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 92
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D + A+R++AKI+++LG P ++ FKI NIV +CDV+FP++L+ L + HS F+SYE
Sbjct: 93 KSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYE 152
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM +P++VLLIFV+G++
Sbjct: 153 PELFPGLIYRMKQPKIVLLIFVSGKV 178
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 35 NVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 94
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D + A+R++AKI+++LG P F +N+VG+ V P+ L + + ++ Y P
Sbjct: 95 EDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYEPE 154
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI ++ P+ L F SGK+++ GAK
Sbjct: 155 LFPGLIYRMKQPKIVLLIFVSGKVVLTGAK 184
>gi|55583664|gb|AAV53354.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 340
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GA
Sbjct: 37 LQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 96
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D + A+R++AKI+++LG P ++ FKI NIV +CDV+FP++L+ L + HS F+SYE
Sbjct: 97 KSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYE 156
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM +P++VLLIFV+G++
Sbjct: 157 PELFPGLIYRMKQPKIVLLIFVSGKV 182
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 39 NVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 98
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D + A+R++AKI+++LG P F +N+VG+ V P+ L + + ++ Y P
Sbjct: 99 EDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYEPE 158
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI ++ P+ L F SGK+++ GAK ++
Sbjct: 159 LFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYE 192
>gi|162605642|ref|XP_001713336.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162605926|ref|XP_001713478.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162606298|ref|XP_001713179.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|6690140|gb|AAF24005.1|AF083031_2 TATA binding protein of transcription factor IID [Guillardia theta]
gi|13794403|gb|AAK39780.1|AF083031_144 TATA binding protein of transcription factor IID [Guillardia theta]
gi|4583657|emb|CAB40395.1| TATA binding protein of transcription factor IID [Guillardia theta]
Length = 249
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 114/146 (78%), Gaps = 1/146 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T+S+G LDL +I + R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 76 QNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVVTGAK 135
Query: 188 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E ++A +K+A+I+++LG+ K+ F+I NIV +CDVRFP++L++L H H+QF SYE
Sbjct: 136 SEDSARVACKKYARIIQRLGYGHAKFIDFRIQNIVASCDVRFPIRLESLAHAHNQFCSYE 195
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+ P+VVLLIFV+G++
Sbjct: 196 PELFPGLIYRMITPKVVLLIFVSGKL 221
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 107/176 (60%), Gaps = 4/176 (2%)
Query: 20 GQACFCLIRGGQKNRRGTNL-NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKIL 78
Q+ R + N N+ N+V T+S+G LDL +I + R +EYNP +F +IM+I
Sbjct: 56 AQSSVVPFRAVRANEITPNIQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIR 115
Query: 79 NPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL--GHPEIIFFFFRNMVGTISV 136
+P+TT L F SGK+++ GAK E ++A +K+A+I+++L GH + I F +N+V + V
Sbjct: 116 DPKTTALIFSSGKMVVTGAKSEDSARVACKKYARIIQRLGYGHAKFIDFRIQNIVASCDV 175
Query: 137 GCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
P+ L + ++ ++ Y P F GLI +++ P+ L F SGKL++ GAK +D
Sbjct: 176 RFPIRLESLAHAHNQFCSYEPELFPGLIYRMITPKVVLLIFVSGKLVLTGAKQRND 231
>gi|195346517|ref|XP_002039804.1| GM15696 [Drosophila sechellia]
gi|194135153|gb|EDW56669.1| GM15696 [Drosophila sechellia]
Length = 352
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 178 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 237
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYE
Sbjct: 238 KSEDSSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 297
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLLIFV+G++
Sbjct: 298 PELFPGLIYRMVRPRIVLLIFVSGKV 323
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 180 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 239
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+I+++LG P + + F +NMVG+ V P+ L + + +S Y P
Sbjct: 240 EDSSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE 299
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L F SGK+++ GAK + A K ILK+
Sbjct: 300 LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 348
>gi|429962646|gb|ELA42190.1| TATA-box-binding protein [Vittaforma corneae ATCC 50505]
Length = 197
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 110/146 (75%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 24 LQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 83
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E K+AS+++AKI+ +LG ++ FKI NIV +CD++F +KL+ L + HS F SYE
Sbjct: 84 KSEKASKMASQRYAKIISKLGFNAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSNFCSYE 143
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 144 PELFPGLIYRMVKPKIVLLIFVSGKI 169
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 26 NVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 85
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E K+AS+++AKI+ +LG + + F +N+V + + + L + + + Y P
Sbjct: 86 EKASKMASQRYAKIISKLGFNAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSNFCSYEPE 145
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI +++ P+ L F SGK+++ GAK D A +L Q
Sbjct: 146 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREDIYEAFDNIYPVLTQ 193
>gi|66819952|ref|XP_643633.1| TATA-binding protein [Dictyostelium discoideum AX4]
gi|166210407|sp|P26355.2|TBP_DICDI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|60471603|gb|EAL69559.1| TATA-binding protein [Dictyostelium discoideum AX4]
Length = 205
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 113/154 (73%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F+S
Sbjct: 19 HPSGIIPTLQNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKS 78
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E + A+RK+A+I+++L P ++ FKI NIV +CDV+FP+KL+ LH+
Sbjct: 79 GKMVCTGAKSEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNA 138
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ F++YEPE+FPGLIY+M++P+VVLLIFV+G+I
Sbjct: 139 HTSFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKI 172
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 29 NIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGAKS 88
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E + A+RK+A+I+++L P F +N+VG+ V P+ L + N+ ++ Y P
Sbjct: 89 EDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYEPE 148
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI K++ P+ L F SGK+++ GAK +
Sbjct: 149 IFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREE 182
>gi|345803952|ref|XP_853710.2| PREDICTED: TATA box binding protein like 2 [Canis lupus familiaris]
Length = 431
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 258 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 317
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF + L+ L H QFSSYE
Sbjct: 318 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAISLEGLVLTHQQFSSYE 377
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 378 PELFPGLIYRMVKPRIVLLIFVSGKV 403
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 260 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 319
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V + L + + ++S Y P
Sbjct: 320 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAISLEGLVLTHQQFSSYEPE 379
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 380 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 426
>gi|6063008|gb|AAF03091.1|AF144035_1 transcription initiation factor TFIID [Antonospora locustae]
Length = 259
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I +P+TT L F SGK+++ GA
Sbjct: 86 LQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 145
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E KLA++KF++I+ +LG K+ FKI NIV +CD +F ++L+ L HS F SYE
Sbjct: 146 KSEQTSKLAAQKFSRIIHKLGFNTKFADFKIQNIVSSCDTQFSIRLEGLAFAHSNFCSYE 205
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 206 PELFPGLIYRMVKPKIVLLIFVSGKI 231
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 7/183 (3%)
Query: 30 GQKNRRGTNL-----NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTC 84
GQ R +++ N+V T+++ C LDL I R R +EYNP +F +IM+I +P+TT
Sbjct: 73 GQDMYRKSDILPALQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTA 132
Query: 85 LAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLN 143
L F SGK+++ GAK E KLA++KF++I+ +LG + + F +N+V + + L
Sbjct: 133 LIFASGKMVVTGAKSEQTSKLAAQKFSRIIHKLGFNTKFADFKIQNIVSSCDTQFSIRLE 192
Query: 144 QIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKI 202
+ + + Y P F GLI +++ P+ L F SGK+++ GAK + A +
Sbjct: 193 GLAFAHSNFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKMRDEIYEAFDNIYPV 252
Query: 203 LKQ 205
L Q
Sbjct: 253 LTQ 255
>gi|428176634|gb|EKX45518.1| hypothetical protein GUITHDRAFT_152740 [Guillardia theta CCMP2712]
Length = 212
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GA
Sbjct: 30 LQNIVATVNLNCSLNLKTITLQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 89
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LASRKFA+I+++LG K+ FKI NIV +CDVRFP++L+ L + H + SYE
Sbjct: 90 KSEESARLASRKFARIIQKLGFSAKFTEFKIQNIVGSCDVRFPIRLEKLAYAHQNYCSYE 149
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+ P+VVLLIFV+G+I
Sbjct: 150 PELFPGLIYRMLVPKVVLLIFVSGKI 175
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 32 NIVATVNLNCSLNLKTITLQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 91
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E +LASRKFA+I+++LG + F +N+VG+ V P+ L ++ + Y Y P
Sbjct: 92 EESARLASRKFARIIQKLGFSAKFTEFKIQNIVGSCDVRFPIRLEKLAYAHQNYCSYEPE 151
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++L P+ L F SGK+++ GAK++ D +A R L +
Sbjct: 152 LFPGLIYRMLVPKVVLLIFVSGKIVLTGAKNKRDIDIAFRTIYHTLHEF 200
>gi|160331843|ref|XP_001712628.1| tfIID [Hemiselmis andersenii]
gi|159766077|gb|ABW98303.1| tfIID [Hemiselmis andersenii]
Length = 267
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 114/146 (78%), Gaps = 1/146 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T+S+G LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++I GAK
Sbjct: 94 QNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVITGAK 153
Query: 188 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E KL +K+A+I+++LG+ +K+ F+I NIV +CDV+FP++L++L H H+QF SYE
Sbjct: 154 SEEAAKLGCKKYARIIQRLGYGHVKFLDFRIQNIVASCDVKFPIRLESLAHAHNQFCSYE 213
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+ P+VVLLIFV+G++
Sbjct: 214 PELFPGLIYRMITPKVVLLIFVSGKL 239
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 98/155 (63%), Gaps = 3/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+S+G LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++I GAK
Sbjct: 95 NVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVITGAKS 154
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
E KL +K+A+I+++LG+ + F FR N+V + V P+ L + ++ ++ Y P
Sbjct: 155 EEAAKLGCKKYARIIQRLGYGHVKFLDFRIQNIVASCDVKFPIRLESLAHAHNQFCSYEP 214
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGKL++ GAK D
Sbjct: 215 ELFPGLIYRMITPKVVLLIFVSGKLVLTGAKERKD 249
>gi|331213275|ref|XP_003319319.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309298309|gb|EFP74900.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 209
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 109/146 (74%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 63 LQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 122
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H FSSYE
Sbjct: 123 KSEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVRFPIRLEGLAYNHGHFSSYE 182
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM K +VVLLIFV+G+I
Sbjct: 183 PELFPGLIYRMNKQKVVLLIFVSGKI 208
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 65 NIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 124
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + F +N+VG+ V P+ L + + +S Y P
Sbjct: 125 EDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVRFPIRLEGLAYNHGHFSSYEPE 184
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLL 182
F GLI ++ + L F SGK++
Sbjct: 185 LFPGLIYRMNKQKVVLLIFVSGKIV 209
>gi|399949933|gb|AFP65589.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 262
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++G LDL +I + R +EYNP +F ++M+I +P+TT L F SGK++I GA
Sbjct: 88 IQNVVSTVNLGIQLDLKRIALKTRNAEYNPRRFAAVVMRIRDPKTTALIFSSGKMVITGA 147
Query: 187 KHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K E KL +K+A+I++++G+ IK+ FKI NIV +CD +FP++L++L H H+QF SY
Sbjct: 148 KSEETAKLGGKKYARIIQKIGYGHIKFLDFKIQNIVASCDTKFPIRLESLAHAHNQFCSY 207
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPELFPGLIYRM+ P+VVLLIFV+G++
Sbjct: 208 EPELFPGLIYRMISPKVVLLIFVSGKL 234
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 99/155 (63%), Gaps = 3/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL +I + R +EYNP +F ++M+I +P+TT L F SGK++I GAK
Sbjct: 90 NVVSTVNLGIQLDLKRIALKTRNAEYNPRRFAAVVMRIRDPKTTALIFSSGKMVITGAKS 149
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
E KL +K+A+I++++G+ I F F+ N+V + P+ L + ++ ++ Y P
Sbjct: 150 EETAKLGGKKYARIIQKIGYGHIKFLDFKIQNIVASCDTKFPIRLESLAHAHNQFCSYEP 209
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI ++++P+ L F SGKL++ GAK +D
Sbjct: 210 ELFPGLIYRMISPKVVLLIFVSGKLVLTGAKQRND 244
>gi|72679753|gb|AAI00306.1| TATA box binding protein like 2 [Mus musculus]
gi|148910845|tpg|DAA06033.1| TPA_inf: TATA box binding protein-like 2 [Mus musculus]
gi|219520477|gb|AAI44905.1| Tbpl2 protein [Mus musculus]
Length = 349
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 176 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGA 235
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QFSSYE
Sbjct: 236 KSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSYE 295
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIY+MVKP+VVLLIF +G++
Sbjct: 296 PELFPGLIYKMVKPQVVLLIFASGKV 321
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 178 NVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKS 237
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E + +LA+RK+A+++++LG P + FF F+ NMVG+ V P+ L + + ++S Y P
Sbjct: 238 EEESRLAARKYARVVQKLGFP-VRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSYEP 296
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI K++ P+ L F SGK+++ GAK + A IL+
Sbjct: 297 ELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILE 344
>gi|322698718|gb|EFY90486.1| TATA binding protein [Metarhizium acridum CQMa 102]
Length = 260
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 112/160 (70%), Gaps = 7/160 (4%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG-------KFHGLIMKILNPRTT 172
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT
Sbjct: 73 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKMLTFDPKRFAAVIMRIREPKTT 132
Query: 173 CLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKL 232
L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L
Sbjct: 133 ALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRL 192
Query: 233 DALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 193 EGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 232
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 9/157 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPG-------KFHGLIMKILNPRTTCLAFQSGKL 92
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+
Sbjct: 82 NIVATVNLDCRLDLKTIALHARNAEYNPKMLTFDPKRFAAVIMRIREPKTTALIFASGKM 141
Query: 93 LILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VR 150
++ GAK E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR
Sbjct: 142 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 201
Query: 151 YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 202 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 238
>gi|198427023|ref|XP_002127120.1| PREDICTED: similar to TATA-box binding protein [Ciona intestinalis]
Length = 356
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 111/146 (76%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 182 LQNIVSTVNLDTKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 241
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E+ +LA+RK+A+++++LG P K+ FKI N+V + DV+FP++L+ L HSQFSSYE
Sbjct: 242 KSENASRLAARKYARVVQKLGFPAKFIDFKIQNMVGSVDVKFPIRLEGLVLAHSQFSSYE 301
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 302 PELFPGLIYRMVKPRIVLLIFVSGKV 327
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 184 NIVSTVNLDTKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 243
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E+ +LA+RK+A+++++LG P + I F +NMVG++ V P+ L + + ++S Y P
Sbjct: 244 ENASRLAARKYARVVQKLGFPAKFIDFKIQNMVGSVDVKFPIRLEGLVLAHSQFSSYEPE 303
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK ++ + A ILK
Sbjct: 304 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVYNEIEEAFNNIYPILK 350
>gi|401826152|ref|XP_003887170.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998328|gb|AFM98189.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
Length = 198
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GA
Sbjct: 25 LQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 84
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E K+A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYE
Sbjct: 85 KSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 144
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKI 170
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 33 NRRG---TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NR G T N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 NRSGIIPTLQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-S 147
GK++I GAK E K+A++++AKI+ +LG + F +N+V + + + L + +
Sbjct: 77 GKMVITGAKSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 136
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
Y Y P F GLI +++ P+ L F SGK+++ GAK D A +L Q
Sbjct: 137 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQ 194
>gi|396081293|gb|AFN82911.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon romaleae SJ-2008]
Length = 198
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GA
Sbjct: 25 LQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 84
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E K+A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYE
Sbjct: 85 KSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 144
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKI 170
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 33 NRRG---TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NR G T N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 NRSGIIPTLQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-S 147
GK++I GAK E K+A++++AKI+ +LG + F +N+V + + + L + +
Sbjct: 77 GKMVITGAKSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 136
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
Y Y P F GLI +++ P+ L F SGK+++ GAK D A +L Q
Sbjct: 137 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQ 194
>gi|169806112|ref|XP_001827801.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
gi|161779087|gb|EDQ31113.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
Length = 233
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 109/145 (75%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T+++ C LDL I R +EYNP KF +IM+I P+TT L F SGK+++ GAK
Sbjct: 61 QNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAK 120
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E ++AS++++KI+++LG + + F + NIV +CD++FP+KL+ L + HS + SYEP
Sbjct: 121 SEKASRIASQRYSKIIQKLGFSVYFDSFTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYEP 180
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 181 ELFPGLIYRMVKPKIVLLIFVSGKI 205
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 4/169 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP KF +IM+I P+TT L F SGK+++ GAK
Sbjct: 62 NVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAKS 121
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E ++AS++++KI+++LG + F F +N+V + + P+ L + + Y Y P
Sbjct: 122 EKASRIASQRYSKIIQKLGF-SVYFDSFTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYEP 180
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI +++ P+ L F SGK+++ GAK D A +L Q
Sbjct: 181 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQ 229
>gi|300701392|ref|XP_002994966.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
gi|239603310|gb|EEQ81295.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
Length = 199
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 107/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GA
Sbjct: 26 LQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKVVITGA 85
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E KLA+++++KI+ +LG + FKI NIV +CD +F ++L+ L + HS + SYE
Sbjct: 86 KSEKQSKLAAQRYSKIINKLGFNADFNDFKIQNIVSSCDTKFSIRLEGLAYSHSNYCSYE 145
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 146 PELFPGLIYRMVKPKIVLLIFVSGKI 171
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 5/184 (2%)
Query: 27 IRGGQKNRRGTN---LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTT 83
I +NR G N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT
Sbjct: 12 IESTVENRSGITPILQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTT 71
Query: 84 CLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDL 142
L F SGK++I GAK E KLA+++++KI+ +LG + + F +N+V + + L
Sbjct: 72 ALIFASGKVVITGAKSEKQSKLAAQRYSKIINKLGFNADFNDFKIQNIVSSCDTKFSIRL 131
Query: 143 NQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 201
+ S Y Y P F GLI +++ P+ L F SGK+++ GAK D A
Sbjct: 132 EGLAYSHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFENIYP 191
Query: 202 ILKQ 205
+L Q
Sbjct: 192 VLTQ 195
>gi|387592277|gb|EIJ87301.1| TATA-box binding protein [Nematocida parisii ERTm3]
gi|387596323|gb|EIJ93945.1| TATA-box binding protein [Nematocida parisii ERTm1]
Length = 189
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 114/154 (74%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP + +N+V T+++ C LDL I R +EYNP +F +I++I PRTT L F S
Sbjct: 8 HPSGLVPTIQNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFAS 67
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK+++ GA+ E D K+A++K++ I+++LG+P+++ FKI NIV +CD +F ++L+ L
Sbjct: 68 GKMVVTGARSEEDSKIAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFG 127
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
HS +SSYEPELFPGLIYRMVKP++VLL+FV+G++
Sbjct: 128 HSNYSSYEPELFPGLIYRMVKPKIVLLVFVSGKV 161
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +I++I PRTT L F SGK+++ GA+
Sbjct: 18 NIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKMVVTGARS 77
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E D K+A++K++ I+++LG+P F +N+V + + L + YS Y P
Sbjct: 78 EEDSKIAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFGHSNYSSYEPE 137
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI +++ P+ L F SGK+++ GAKH + A +LKQ
Sbjct: 138 LFPGLIYRMVKPKIVLLVFVSGKVVLTGAKHREEIYQAFENIYPVLKQ 185
>gi|348686379|gb|EGZ26194.1| hypothetical protein PHYSODRAFT_345098 [Phytophthora sojae]
Length = 255
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 109/144 (75%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+VGT+ + PLDL I R +EYNP +F +IM++ +P+TT L F SGK++I G
Sbjct: 56 NVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITGGTS 115
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E C+LA+RKF +++++L P K+ FK+ N++ TCD+RFP++L+ L + H++FSSYEPE
Sbjct: 116 EESCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSYEPE 175
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGLIY++V+P++ LLIFV+G+I
Sbjct: 176 LFPGLIYKLVEPKLTLLIFVSGKI 199
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+VGT+ + PLDL I R +EYNP +F +IM++ +P+TT L F SGK++I G
Sbjct: 55 MNVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITGGT 114
Query: 99 HEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
E C+LA+RKF +++++L P + F RN++GT + P+ L +N R+S Y P
Sbjct: 115 SEESCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSYEP 174
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI K++ P+ T L F SGK+++ GA+ + A K +L Q
Sbjct: 175 ELFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLHQAIDKMYPVLLQ 223
>gi|307180303|gb|EFN68336.1| TATA-box-binding protein [Camponotus floridanus]
Length = 252
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 111/157 (70%), Gaps = 11/157 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++G L LN IN R R SEYNP +F GLIM+I NPR T L F SGKL+ GA
Sbjct: 68 LQNVVSTANLGTELKLNYINIRTRNSEYNPARFTGLIMRIRNPRATALIFSSGKLVCTGA 127
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKY--QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
K E+D LA+++FA+I+++LG P+K+ FK+ NIV TCDV+FP+KL+ L+ H Q S
Sbjct: 128 KSENDSFLAAKRFARIIQKLGFPVKFMSDSFKVQNIVATCDVKFPIKLENLYREHPQLCS 187
Query: 245 YEPELFPGLIYRMVKP---------RVVLLIFVNGRI 272
YEPEL+PGLIYR+ P +VVLLIFVNG++
Sbjct: 188 YEPELYPGLIYRVYIPGNRDNPPISKVVLLIFVNGKV 224
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 99/179 (55%), Gaps = 13/179 (7%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++G L LN IN R R SEYNP +F GLIM+I NPR T L F SGKL+ GAK
Sbjct: 70 NVVSTANLGTELKLNYINIRTRNSEYNPARFTGLIMRIRNPRATALIFSSGKLVCTGAKS 129
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF---FFFRNMVGTISVGCPLDL-NQINSRVRYSEYN 155
E+D LA+++FA+I+++LG P F +N+V T V P+ L N + Y
Sbjct: 130 ENDSFLAAKRFARIIQKLGFPVKFMSDSFKVQNIVATCDVKFPIKLENLYREHPQLCSYE 189
Query: 156 PGKFHGLIMKILNP---------RTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P + GLI ++ P + L F +GK+++ GAK+ + + A +L Q
Sbjct: 190 PELYPGLIYRVYIPGNRDNPPISKVVLLIFVNGKVVLTGAKNIDELRNALNLMYPVLMQ 248
>gi|19074223|ref|NP_584829.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|19068865|emb|CAD25333.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|449329027|gb|AGE95302.1| transcription initiation factor tfIId [Encephalitozoon cuniculi]
Length = 198
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GA
Sbjct: 25 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 84
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYE
Sbjct: 85 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 144
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKI 170
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 33 NRRG---TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NR G T N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F S
Sbjct: 17 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-S 147
GK++I GAK E ++A++++AKI+ +LG + F +N+V + + + L + +
Sbjct: 77 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 136
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
Y Y P F GLI +++ P+ L F SGK+++ GAK D A +L Q
Sbjct: 137 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQ 194
>gi|301112330|ref|XP_002905244.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262095574|gb|EEY53626.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 251
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 109/144 (75%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+VGT+ + PLDL I R +EYNP +F +IM++ +P+TT L F SGK++I G
Sbjct: 52 NVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITGGTS 111
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E C+LA+RKF +++++L P K+ FK+ N++ TCD+RFP++L+ L + H++FSSYEPE
Sbjct: 112 EDSCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSYEPE 171
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGLIY++V+P++ LLIFV+G+I
Sbjct: 172 LFPGLIYKLVEPKLTLLIFVSGKI 195
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+VGT+ + PLDL I R +EYNP +F +IM++ +P+TT L F SGK++I G
Sbjct: 51 MNVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITGGT 110
Query: 99 HEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
E C+LA+RKF +++++L P + F RN++GT + P+ L +N R+S Y P
Sbjct: 111 SEDSCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSYEP 170
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI K++ P+ T L F SGK+++ GA+ + A K +L Q
Sbjct: 171 ELFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLHQAIDKMYPVLLQ 219
>gi|339961266|pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961267|pdb|3OC3|D Chain D, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961268|pdb|3OCI|A Chain A, Crystal Structure Of Tbp (Tata Box Binding Protein)
gi|339961269|pdb|3OCI|B Chain B, Crystal Structure Of Tbp (Tata Box Binding Protein)
Length = 218
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GA
Sbjct: 45 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 104
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYE
Sbjct: 105 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 164
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 165 PELFPGLIYRMVKPKIVLLIFVSGKI 190
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 33 NRRG---TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NR G T N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F S
Sbjct: 37 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 96
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-S 147
GK++I GAK E ++A++++AKI+ +LG + F +N+V + + + L + +
Sbjct: 97 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 156
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
Y Y P F GLI +++ P+ L F SGK+++ GAK D A +L Q
Sbjct: 157 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQ 214
>gi|259090139|pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein
gi|259090140|pdb|3EIK|B Chain B, Double Stranded Dna Binding Protein
Length = 218
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GA
Sbjct: 45 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 104
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYE
Sbjct: 105 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 164
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 165 PELFPGLIYRMVKPKIVLLIFVSGKI 190
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 33 NRRG---TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NR G T N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F S
Sbjct: 37 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 96
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-S 147
GK++I GAK E ++A++++AKI+ +LG + F +N+V + + + L + +
Sbjct: 97 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 156
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
Y Y P F GLI +++ P+ L F SGK+++ GAK D A +L Q
Sbjct: 157 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQ 214
>gi|303389118|ref|XP_003072792.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
gi|303301934|gb|ADM11432.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
Length = 198
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GA
Sbjct: 25 LQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGA 84
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYE
Sbjct: 85 KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYE 144
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 145 PELFPGLIYRMVKPKIVLLIFVSGKI 170
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 27 NVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKS 86
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E ++A++++AKI+ +LG + F +N+V + + + L + + Y Y P
Sbjct: 87 EKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPE 146
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GLI +++ P+ L F SGK+++ GAK D A +L Q
Sbjct: 147 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYRAFNNIYPVLIQ 194
>gi|46128099|ref|XP_388603.1| hypothetical protein FG08427.1 [Gibberella zeae PH-1]
Length = 290
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 112/159 (70%), Gaps = 6/159 (3%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG------KFHGLIMKILNPRTTC 173
P I +N+V T+++ C LDL I R +EYNP +F +IM+I P+TT
Sbjct: 74 PSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKVHQTLRRFAAVIMRIREPKTTA 133
Query: 174 LAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLD 233
L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+
Sbjct: 134 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLE 193
Query: 234 ALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 194 GLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 232
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 113/198 (57%), Gaps = 10/198 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPG------KFHGLIMKILNPRTTCLAFQSGKLL 93
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK++
Sbjct: 83 NIVATVNLDCRLDLKTIALHARNAEYNPKVHQTLRRFAAVIMRIREPKTTALIFASGKMV 142
Query: 94 ILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRY 151
+ GAK E D KLASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +
Sbjct: 143 VTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNF 202
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL--GHP 209
S Y P F GLI +++ P+ L F SGK+++ GAK + A +L+ L H
Sbjct: 203 SSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQGLRCHHI 262
Query: 210 IKYQGFKIHNIVCTCDVR 227
I Y I I+ TC +R
Sbjct: 263 ISYPTHHIITILSTCMIR 280
>gi|290994623|ref|XP_002679931.1| TATA-box binding protein [Naegleria gruberi]
gi|284093550|gb|EFC47187.1| TATA-box binding protein [Naegleria gruberi]
Length = 318
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 110/150 (73%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 182
I +N+V T+++ C L L I R +EYNP +F +IM+I P+TT L FQSGK++
Sbjct: 131 IIPVIQNVVSTVNLACELKLKMIALHARNAEYNPKRFAAVIMRIREPKTTALIFQSGKMV 190
Query: 183 ILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
+ GAK E + +LA+RK+A+I+++LG K+ FKI NIV +CDV FPV+L+ L+ H +
Sbjct: 191 VTGAKSEEESRLAARKYARIIQKLGFNAKFTEFKIQNIVGSCDVGFPVRLEGLNCQHHSY 250
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+SYEPE+FPGLIYRMV P+VVLLIFV+G+I
Sbjct: 251 ASYEPEIFPGLIYRMVDPKVVLLIFVSGKI 280
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L L I R +EYNP +F +IM+I P+TT L FQSGK+++ GAK
Sbjct: 137 NVVSTVNLACELKLKMIALHARNAEYNPKRFAAVIMRIREPKTTALIFQSGKMVVTGAKS 196
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E + +LA+RK+A+I+++LG + + F +N+VG+ VG P+ L +N Y+ Y P
Sbjct: 197 EEESRLAARKYARIIQKLGFNAKFTEFKIQNIVGSCDVGFPVRLEGLNCQHHSYASYEPE 256
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++++P+ L F SGK+++ GAKH A + +L+
Sbjct: 257 IFPGLIYRMVDPKVVLLIFVSGKIVLTGAKHRDTIYQAFQNIYPVLRDF 305
>gi|307109595|gb|EFN57833.1| hypothetical protein CHLNCDRAFT_20778 [Chlorella variabilis]
Length = 209
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 110/154 (71%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I R +EYNP +F +IM+I P++T L F S
Sbjct: 23 HPSGIVPQLQNVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRIREPKSTALIFHS 82
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ G K E + ++ASRK+AKIL++L + + ++ FKI N+V +CDV+FP++L+ L
Sbjct: 83 GKMVCTGTKSEQEARIASRKYAKILQKLQYSVSFKEFKIQNMVGSCDVKFPIRLEGLAST 142
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ F SYEPELFPGLIYRM P++VLLIFV+G++
Sbjct: 143 HAVFCSYEPELFPGLIYRMADPKIVLLIFVSGKV 176
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 4/155 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P++T L F SGK++ G K
Sbjct: 33 NVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRIREPKSTALIFHSGKMVCTGTKS 92
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSR-VRYSEYNP 156
E + ++ASRK+AKIL++L + + F F +NMVG+ V P+ L + S + Y P
Sbjct: 93 EQEARIASRKYAKILQKLQY-SVSFKEFKIQNMVGSCDVKFPIRLEGLASTHAVFCSYEP 151
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI ++ +P+ L F SGK+++ GAK D
Sbjct: 152 ELFPGLIYRMADPKIVLLIFVSGKVVLTGAKKRED 186
>gi|39979630|ref|NP_951014.1| TATA box-binding protein-like protein 2 [Mus musculus]
gi|81870779|sp|Q6SJ95.1|TBPL2_MOUSE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569211|gb|AAR24282.1| TBP-related factor 3 [Mus musculus]
gi|111600530|gb|AAI19161.1| TATA box binding protein like 2 [Mus musculus]
Length = 350
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 176 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGA 235
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SSY 245
K E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QF SSY
Sbjct: 236 KSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSSY 295
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPELFPGLIY+MVKP+VVLLIF +G++
Sbjct: 296 EPELFPGLIYKMVKPQVVLLIFASGKV 322
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 178 NVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKS 237
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCP--LDLNQINSRVRYSEYN 155
E + +LA+RK+A+++++LG P + FF F+ NMVG+ V P L++ + R S Y
Sbjct: 238 EEESRLAARKYARVVQKLGFP-VRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSSYE 296
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
P F GLI K++ P+ L F SGK+++ GAK + A IL+
Sbjct: 297 PELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILE 345
>gi|328870425|gb|EGG18799.1| TATA-binding protein [Dictyostelium fasciculatum]
Length = 236
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 119/166 (71%)
Query: 107 SRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKI 166
S + A + + HP I +N+V T+++G L+L I +EYNP +F +IM+I
Sbjct: 31 STQQASTIDLVKHPSGIVPVLQNIVSTVNMGTELNLKTIALGALNAEYNPKRFAAVIMRI 90
Query: 167 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDV 226
+P+TT L F+SGK++ GAK E KLA+RK+A+I+++L P ++ FKI NIV +CDV
Sbjct: 91 RDPKTTALIFKSGKMVCTGAKSEEASKLAARKYARIIQKLDFPAIFKDFKIQNIVGSCDV 150
Query: 227 RFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+FP++L+ L++ H F++YEPE+FPGLIY+M++P+VVLLIFV+G+I
Sbjct: 151 KFPIRLENLNNAHKVFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKI 196
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G L+L I +EYNP +F +IM+I +P+TT L F+SGK++ GAK
Sbjct: 53 NIVSTVNMGTELNLKTIALGALNAEYNPKRFAAVIMRIRDPKTTALIFKSGKMVCTGAKS 112
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPG 157
E KLA+RK+A+I+++L P I F +N+VG+ V P+ L +N+ + ++ Y P
Sbjct: 113 EEASKLAARKYARIIQKLDFPAIFKDFKIQNIVGSCDVKFPIRLENLNNAHKVFTNYEPE 172
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GLI K++ P+ L F SGK+++ GAK + A +L P
Sbjct: 173 IFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLNSFRKP 224
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ V P+ L +N+ + ++ Y P F GLI K++ P+ L F SGK+++ GAK
Sbjct: 143 NIVGSCDVKFPIRLENLNNAHKVFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLTGAK 202
Query: 99 HEHDCKLASRKFAKILKQLGHPE 121
+ A +L P+
Sbjct: 203 VREEIYEAFENIYPVLNSFRKPQ 225
>gi|429964398|gb|ELA46396.1| TATA-box-binding protein [Vavraia culicis 'floridensis']
Length = 201
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 108/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C L+L I R R +EYNP +F +IM+I +P+TT L F SGK++I GA
Sbjct: 28 LQNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITGA 87
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E ++A++K+A+I+ +LG ++ FKI NIV +CD +F ++L+ L + HS F SYE
Sbjct: 88 KSEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSYE 147
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV P++VLLIFV+G+I
Sbjct: 148 PELFPGLIYRMVNPKIVLLIFVSGKI 173
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I R R +EYNP +F +IM+I +P+TT L F SGK++I GAK
Sbjct: 30 NVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITGAKS 89
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E ++A++K+A+I+ +LG + + F +N+V + + L + + + Y P
Sbjct: 90 EQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSYEPE 149
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++NP+ L F SGK+++ GAK
Sbjct: 150 LFPGLIYRMVNPKIVLLIFVSGKIVLTGAK 179
>gi|354503979|ref|XP_003514057.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cricetulus
griseus]
Length = 350
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 176 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALLFSSGKVVCTGA 235
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SSY 245
K E + +LA+RK+A+++++LG P+K+ FKI N+V +CDV+FP++L+ L H QF SSY
Sbjct: 236 KSEEESRLAARKYARVVQKLGFPVKFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSSY 295
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPELFPGLIY+MV+P+VVLLIF +G++
Sbjct: 296 EPELFPGLIYKMVRPQVVLLIFASGKV 322
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 178 NVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALLFSSGKVVCTGAKS 237
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCP--LDLNQINSRVRYSEYN 155
E + +LA+RK+A+++++LG P + FF F+ NMVG+ V P L++ + R S Y
Sbjct: 238 EEESRLAARKYARVVQKLGFP-VKFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSSYE 296
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
P F GLI K++ P+ L F SGK+++ GAK + A IL+
Sbjct: 297 PELFPGLIYKMVRPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILE 345
>gi|402470285|gb|EJW04618.1| TATA-box-binding protein [Edhazardia aedis USNM 41457]
Length = 198
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 109/150 (72%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 182
IF +N+V T+++G L L I + R +EYNP +F +IM+I P+TT L F SGK++
Sbjct: 21 IFPIIQNVVATVNLGHHLTLQDIAYKTRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMV 80
Query: 183 ILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
+ GAK E A+RKFA+I+++ G P K++ +KI NIV +CD++F V+L+ L +H +
Sbjct: 81 VTGAKSEASSMFAARKFARIIQKAGFPAKFKDYKIQNIVSSCDIKFNVRLEGLAFMHGPY 140
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
SYEPELFPGLIYRMVKP++VLLIFV+G+I
Sbjct: 141 CSYEPELFPGLIYRMVKPKIVLLIFVSGKI 170
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G L L I + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 27 NVVATVNLGHHLTLQDIAYKTRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVVTGAKS 86
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVR--------- 150
E A+RKFA+I+++ G P F + I C + N VR
Sbjct: 87 EASSMFAARKFARIIQKAGFPAK---FKDYKIQNIVSSCDIKFN-----VRLEGLAFMHG 138
Query: 151 -YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
Y Y P F GLI +++ P+ L F SGK++I GAK + A +L Q
Sbjct: 139 PYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVITGAKAREEIYQAFESIYPVLTQ 194
>gi|320164625|gb|EFW41524.1| Tbpl2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 208
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++G LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GA
Sbjct: 27 LQNVVSTANLGVTLDLKTITMQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 86
Query: 187 KHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K EHD + A+RKFAKI++++G+ K+ FKI N+V +CDV+FP++L+ L HS F+SY
Sbjct: 87 KSEHDSREAARKFAKIIQKVGYKNAKFLDFKIQNMVASCDVKFPIRLEGLVLGHSTFASY 146
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE+FPGL+Y MV P+VVLLIFV+G++
Sbjct: 147 EPEIFPGLVYHMVSPKVVLLIFVSGKV 173
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 3/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++G LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 29 NVVSTANLGVTLDLKTITMQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 88
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLN-QINSRVRYSEYNP 156
EHD + A+RKFAKI++++G+ F F+ NMV + V P+ L + ++ Y P
Sbjct: 89 EHDSREAARKFAKIIQKVGYKNAKFLDFKIQNMVASCDVKFPIRLEGLVLGHSTFASYEP 148
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GL+ +++P+ L F SGK+++ GAK + A +LK+
Sbjct: 149 EIFPGLVYHMVSPKVVLLIFVSGKVVLTGAKEKEQITTAFNNIYAVLKE 197
>gi|167899|gb|AAA33256.1| TFIID [Dictyostelium discoideum]
Length = 205
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 112/154 (72%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ L L I R +EYNP +F +IM+I P+TT L F+S
Sbjct: 19 HPSGIIPTLQNIVSTVNMATELYLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKS 78
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E + A+RK+A+I+++L P ++ FKI NIV +CDV+FP+KL+ LH+
Sbjct: 79 GKMVCTGAKSEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNA 138
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H+ F++YEPE+FPGLIY+M++P+V+LLIFV+G+I
Sbjct: 139 HTSFTNYEPEIFPGLIYKMIQPKVLLLIFVSGKI 172
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ L L I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 29 NIVSTVNMATELYLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGAKS 88
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E + A+RK+A+I+++L P F +N+VG+ V P+ L + N+ ++ Y P
Sbjct: 89 EDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYEPE 148
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI K++ P+ L F SGK+++ GAK
Sbjct: 149 IFPGLIYKMIQPKVLLLIFVSGKIVLTGAK 178
>gi|402588148|gb|EJW82082.1| TATA box binding protein [Wuchereria bancrofti]
Length = 198
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 109/150 (72%), Gaps = 4/150 (2%)
Query: 127 FRNMVGTISVG----CPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 182
+N+V T+++G C +I R +EYNP +F +IM+I PRTT L F SGK++
Sbjct: 22 LQNIVSTVNLGESLKCAAGFEKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 81
Query: 183 ILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
GAK E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QF
Sbjct: 82 CTGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQF 141
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
S+YEPELFPGLIYRMVKPRVVLLIFV+G++
Sbjct: 142 STYEPELFPGLIYRMVKPRVVLLIFVSGKV 171
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 6/171 (3%)
Query: 40 NMVGTISVG----CPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 95
N+V T+++G C +I R +EYNP +F +IM+I PRTT L F SGK++
Sbjct: 24 NIVSTVNLGESLKCAAGFEKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 83
Query: 96 GAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSE 153
GAK E +LA+RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S
Sbjct: 84 GAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFST 143
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
Y P F GLI +++ PR L F SGK++I GAK++ D A + ILK
Sbjct: 144 YEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILK 194
>gi|330038400|ref|XP_003239586.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206510|gb|AEA38688.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 231
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T+++G LDL +I + R +E+NP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 58 QNVVATVNLGIQLDLKRIAIKARNAEFNPRRFAAVIMRIREPKTTALIFSSGKIVVTGAK 117
Query: 188 HEHDCKLASRKFAKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E ++A +K+ +I+++LG+ K+ F+I NIV +CDVRFP++L++L H H+QF SYE
Sbjct: 118 SEDTSRIACKKYTRIIQRLGYGHAKFLNFRIQNIVASCDVRFPIRLESLAHAHNQFCSYE 177
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+ P+VVLLIFV+G++
Sbjct: 178 PELFPGLIYRMINPKVVLLIFVSGKL 203
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 98/155 (63%), Gaps = 3/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL +I + R +E+NP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 59 NVVATVNLGIQLDLKRIAIKARNAEFNPRRFAAVIMRIREPKTTALIFSSGKIVVTGAKS 118
Query: 100 EHDCKLASRKFAKILKQL--GHPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
E ++A +K+ +I+++L GH + + F +N+V + V P+ L + ++ ++ Y P
Sbjct: 119 EDTSRIACKKYTRIIQRLGYGHAKFLNFRIQNIVASCDVRFPIRLESLAHAHNQFCSYEP 178
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++NP+ L F SGKL++ GAK D
Sbjct: 179 ELFPGLIYRMINPKVVLLIFVSGKLVLTGAKQRKD 213
>gi|449278063|gb|EMC86030.1| TATA-box-binding protein [Columba livia]
Length = 301
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 106/146 (72%), Gaps = 2/146 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 129 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 188
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ YE
Sbjct: 189 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGXXXXKKML--YE 246
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 247 PELFPGLIYRMIKPRIVLLIFVSGKV 272
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 131 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 190
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGK 158
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + Y P
Sbjct: 191 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGXXXXKKML-YEPEL 249
Query: 159 FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 250 FPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 295
>gi|440494309|gb|ELQ76708.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Trachipleistophora hominis]
Length = 234
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 108/145 (74%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T+++ C L+L I R R +EYNP +F +IM+I +P+TT L F SGK++I GAK
Sbjct: 62 QNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITGAK 121
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E ++A++K+A+I+ +LG ++ FKI NIV +CD +F ++L+ L + HS F SYEP
Sbjct: 122 SEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSYEP 181
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRMV P++VLLIFV+G+I
Sbjct: 182 ELFPGLIYRMVNPKIVLLIFVSGKI 206
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C L+L I R R +EYNP +F +IM+I +P+TT L F SGK++I GAK
Sbjct: 63 NVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITGAKS 122
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E ++A++K+A+I+ +LG + + F +N+V + + L + + + Y P
Sbjct: 123 EQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSYEPE 182
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI +++NP+ L F SGK+++ GAK
Sbjct: 183 LFPGLIYRMVNPKIVLLIFVSGKIVLTGAK 212
>gi|242039091|ref|XP_002466940.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
gi|241920794|gb|EER93938.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
Length = 225
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP +N+V T+++GC LDL QI S R +EYNP +F +I++I +P+TT L F S
Sbjct: 38 HPSGFVPTLQNIVSTVNLGCKLDLQQIASGARNAEYNPKRFAAVIVRIRDPKTTALVFAS 97
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GK++ GAK E +LA RKFA+I+ +LG +++ FKI NIV +CDV+FP++L+ L
Sbjct: 98 GKMVCTGAKSEEHSRLAGRKFARIVHKLGFQSARFKDFKIQNIVGSCDVKFPIRLEGLAL 157
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
F++YEPE+FPGLIYRMV+P++V+LIFV+G+I
Sbjct: 158 ASGTFANYEPEIFPGLIYRMVEPKIVILIFVSGKI 192
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 3/170 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL QI S R +EYNP +F +I++I +P+TT L F SGK++ GAK
Sbjct: 48 NIVSTVNLGCKLDLQQIASGARNAEYNPKRFAAVIVRIRDPKTTALVFASGKMVCTGAKS 107
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E +LA RKFA+I+ +LG F F +N+VG+ V P+ L + + ++ Y P
Sbjct: 108 EEHSRLAGRKFARIVHKLGFQSARFKDFKIQNIVGSCDVKFPIRLEGLALASGTFANYEP 167
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ GAK + A +L Q
Sbjct: 168 EIFPGLIYRMVEPKIVILIFVSGKIVLTGAKVREEIYTAFENIYPMLVQF 217
>gi|242247621|ref|NP_001156189.1| TATA-box-binding protein-like [Acyrthosiphon pisum]
gi|239791994|dbj|BAH72388.1| ACYPI005546 [Acyrthosiphon pisum]
Length = 331
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 105/145 (72%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V ++GCPLDL +I SEYNP +F+GLIM++ P T L F SGK+++ GAK
Sbjct: 159 QNIVCGANMGCPLDLVRIVMWTSNSEYNPLRFNGLIMRLRTPNVTSLLFPSGKMIMQGAK 218
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ L RK AKIL++LGH +K+ + +HNIVCT DV FP+ L+ L+ HSQF+S+EP
Sbjct: 219 DDRTGNLGCRKVAKILERLGHNVKFSDYTVHNIVCTWDVGFPIMLEELNTAHSQFTSFEP 278
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E+FP LIYRMVKPR V L+FVNG++
Sbjct: 279 EVFPALIYRMVKPRAVFLMFVNGKV 303
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++GCPLDL +I SEYNP +F+GLIM++ P T L F SGK+++ GAK
Sbjct: 160 NIVCGANMGCPLDLVRIVMWTSNSEYNPLRFNGLIMRLRTPNVTSLLFPSGKMIMQGAKD 219
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
+ L RK AKIL++LGH + + N+V T VG P+ L ++N+ +++ + P
Sbjct: 220 DRTGNLGCRKVAKILERLGHNVKFSDYTVHNIVCTWDVGFPIMLEELNTAHSQFTSFEPE 279
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 193
F LI +++ PR L F +GK+++ G K + D K
Sbjct: 280 VFPALIYRMVKPRAVFLMFVNGKVVLTGLKTKSDIK 315
>gi|303283248|ref|XP_003060915.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
gi|226457266|gb|EEH54565.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
Length = 249
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 107/154 (69%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I R EYNP +F IM+I P+TT L F S
Sbjct: 38 HPSGIVPTLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSS 97
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E + A+RK+AK++ +LG P +++ FKI N+V +CDV+FP++L+ L
Sbjct: 98 GKMVCTGAKTEALAREAARKYAKVISKLGFPAQFKEFKIQNMVGSCDVKFPIRLEGLAWS 157
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H F+ YEPELFPGLIYRMV P++VLLIFV+G+I
Sbjct: 158 HGHFAQYEPELFPGLIYRMVVPKIVLLIFVSGKI 191
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R EYNP +F IM+I P+TT L F SGK++ GAK
Sbjct: 48 NIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKMVCTGAKT 107
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E + A+RK+AK++ +LG P + F +NMVG+ V P+ L + S +++Y P
Sbjct: 108 EALAREAARKYAKVISKLGFPAQFKEFKIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPE 167
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+ L F SGK+++ G K D A +L +
Sbjct: 168 LFPGLIYRMVVPKIVLLIFVSGKIVLTGGKKREDIYQAFENIYPVLTEF 216
>gi|118352110|ref|XP_001009328.1| TATA-box binding protein [Tetrahymena thermophila]
gi|89291095|gb|EAR89083.1| TATA-box binding protein [Tetrahymena thermophila SB210]
Length = 246
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 108/152 (71%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E ++ +N+V T+++ LDL QI R R +EYNP +F +IM++ +P+TT L F SGK
Sbjct: 47 EDLYPKLQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGK 106
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
++ GAK E D A+RK+AKI++++G P++++ FKI NIV + DV+FP+ LD L H
Sbjct: 107 MVCTGAKTEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHK 166
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+F YEPE+FPGLIYR ++VLLIFV+G+I
Sbjct: 167 KFVQYEPEIFPGLIYREFNTKIVLLIFVSGKI 198
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL QI R R +EYNP +F +IM++ +P+TT L F SGK++ GAK
Sbjct: 55 NIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGAKT 114
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D A+RK+AKI++++G P + F +N+VG+ V P++L+ + ++ +Y P
Sbjct: 115 EEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQYEPE 174
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
F GLI + N + L F SGK+++ GAK + A +K +L Y+G +
Sbjct: 175 IFPGLIYREFNTKIVLLIFVSGKIVLTGAKTRENINKAFQKIYWVLYNYQKK-DYRGANL 233
Query: 218 HN 219
HN
Sbjct: 234 HN 235
>gi|145352509|ref|XP_001420584.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580819|gb|ABO98877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 226
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 107/154 (69%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I R EYNP +F IM+I NP+TT L F S
Sbjct: 25 HPSGIVPVLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRNPKTTALIFSS 84
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E + A+RK+AK++ +LG P +++ FKI N+V +CDV+FP++L+ L
Sbjct: 85 GKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDVQFPIRLEGLAWQ 144
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H F+ YEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 145 HGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKI 178
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R EYNP +F IM+I NP+TT L F SGK++ GAK
Sbjct: 35 NIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRNPKTTALIFSSGKMVCTGAKT 94
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
E + A+RK+AK++ +LG P + F +NMVG+ V P+ L + + +++Y P
Sbjct: 95 EALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDVQFPIRLEGLAWQHGHFAQYEPE 154
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL---KQLGHP 209
F GLI ++ P+ L F SGK+++ G K D A +L K+L P
Sbjct: 155 LFPGLIYRMQMPKIVLLIFVSGKIVLTGGKRREDIYQAFENIYPVLTEFKKLAQP 209
>gi|255552716|ref|XP_002517401.1| TATA-box binding protein, putative [Ricinus communis]
gi|223543412|gb|EEF44943.1| TATA-box binding protein, putative [Ricinus communis]
Length = 190
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 110/147 (74%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL I R SEYNP +F +IM++ +P+TT L F SGK++ GA
Sbjct: 17 LQNIVSTVNLDCKLDLKDIALHSRNSEYNPRRFSAVIMRLRDPKTTALLFASGKMVCTGA 76
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA-LHHVHSQFSSY 245
K E K+A+RK+A+I+++LG P K++ FKI NIV +CDV F ++L+ ++ H+ FSSY
Sbjct: 77 KSEAQSKIAARKYARIVQKLGFPAKFKDFKIQNIVASCDVNFRIRLEKFVYSKHAAFSSY 136
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE+FPG+IYRM KP++V+LIFV+G+I
Sbjct: 137 EPEIFPGMIYRMTKPKIVMLIFVSGKI 163
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R SEYNP +F +IM++ +P+TT L F SGK++ GAK
Sbjct: 19 NIVSTVNLDCKLDLKDIALHSRNSEYNPRRFSAVIMRLRDPKTTALLFASGKMVCTGAKS 78
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI--NSRVRYSEYNP 156
E K+A+RK+A+I+++LG P + F +N+V + V + L + + +S Y P
Sbjct: 79 EAQSKIAARKYARIVQKLGFPAKFKDFKIQNIVASCDVNFRIRLEKFVYSKHAAFSSYEP 138
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
F G+I ++ P+ L F SGK++I GAK D A
Sbjct: 139 EIFPGMIYRMTKPKIVMLIFVSGKIVITGAKTREDTYAA 177
>gi|67479107|ref|XP_654935.1| TATA binding protein [Entamoeba histolytica HM-1:IMSS]
gi|296439771|sp|A7UFC2.1|TBPL1_ENTHI RecName: Full=TATA-box-binding protein-like protein 1; Short=EhTRF1
gi|56472030|gb|EAL49549.1| TATA binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|155007635|gb|ABS89251.1| TBP-related factor [Entamoeba histolytica]
gi|407041324|gb|EKE40663.1| transcription initiation factor TFIID family protein [Entamoeba
nuttalli P19]
gi|449703269|gb|EMD43751.1| TBPrelated factor, putative [Entamoeba histolytica KU27]
Length = 216
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 101 HDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGK 158
+D +++S I+KQL P EI +N+V T+ + C ++L + RVR +EYNP +
Sbjct: 13 NDLEISSNNNKPIIKQLPVPTNEIEKPVIQNIVATVELDCTINLQDVVRRVRNAEYNPKR 72
Query: 159 FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIH 218
F LI++I NP+TT L F SGKL++ G K D +LA RK+A+IL++LG+ +K+ FKI
Sbjct: 73 FGALIIRITNPKTTALVFHSGKLVVTGGKTVDDSRLAGRKYARILQRLGYNVKFNHFKIQ 132
Query: 219 NIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
N+V +CD++F + L L + + + YEPE+FPG++YR+ P++VLLIF +G+I
Sbjct: 133 NVVASCDMKFAISLKELIQLAPKITKYEPEIFPGVVYRLADPKMVLLIFASGKI 186
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + C ++L + RVR +EYNP +F LI++I NP+TT L F SGKL++ G K
Sbjct: 43 NIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTGGKT 102
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
D +LA RK+A+IL++LG+ + F F +N+V + + + L + I + ++Y P
Sbjct: 103 VDDSRLAGRKYARILQRLGY-NVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITKYEP 161
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
F G++ ++ +P+ L F SGK++ G K A + KIL Q+ +
Sbjct: 162 EIFPGVVYRLADPKMVLLIFASGKIVFTGGKEIEQINKAFSEIYKILLQVAN 213
>gi|328705141|ref|XP_001943046.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Acyrthosiphon pisum]
Length = 343
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 105/145 (72%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V ++GCPLDL +I SEYNP +F+GLIM++ P T L F SGK+++ GAK
Sbjct: 171 QNIVCGANMGCPLDLVRIVMWTSNSEYNPQRFNGLIMRLRTPNVTSLLFPSGKMIMQGAK 230
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ L RK AKIL++LGH +++ + +HNIVCT DV FP+ L+ L+ HSQF+S+EP
Sbjct: 231 DDRTGNLGCRKVAKILERLGHNVQFCDYTVHNIVCTWDVGFPIMLEELNTAHSQFTSFEP 290
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E+FP LIYRMVKPR V L+FVNG++
Sbjct: 291 EVFPALIYRMVKPRAVFLMFVNGKV 315
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++GCPLDL +I SEYNP +F+GLIM++ P T L F SGK+++ GAK
Sbjct: 172 NIVCGANMGCPLDLVRIVMWTSNSEYNPQRFNGLIMRLRTPNVTSLLFPSGKMIMQGAKD 231
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSEYNPG 157
+ L RK AKIL++LGH + + N+V T VG P+ L ++N+ +++ + P
Sbjct: 232 DRTGNLGCRKVAKILERLGHNVQFCDYTVHNIVCTWDVGFPIMLEELNTAHSQFTSFEPE 291
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 193
F LI +++ PR L F +GK+++ G K + D K
Sbjct: 292 VFPALIYRMVKPRAVFLMFVNGKVVLTGLKTKADIK 327
>gi|3122945|sp|Q27850.1|TBP_TETTH RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349811|gb|AAC14470.1| TATA-binding protein [Tetrahymena thermophila]
Length = 246
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 107/152 (70%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E ++ +N+V T+++ LDL QI R R +EYNP +F +IM++ +P+TT L F SGK
Sbjct: 47 EDLYPKLQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGK 106
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
++ GAK E D A+RK+AKI++++G P++++ FKI NIV + DV+FP+ LD L H
Sbjct: 107 MVCTGAKTEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHK 166
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+F YEPE+FPG IYR ++VLLIFV+G+I
Sbjct: 167 KFVQYEPEIFPGKIYREFNTKIVLLIFVSGKI 198
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL QI R R +EYNP +F +IM++ +P+TT L F SGK++ GAK
Sbjct: 55 NIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGAKT 114
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D A+RK+AKI++++G P + F +N+VG+ V P++L+ + ++ +Y P
Sbjct: 115 EEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQYEPE 174
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
F G I + N + L F SGK+++ GAK + A +K +L Y+G +
Sbjct: 175 IFPGKIYREFNTKIVLLIFVSGKIVLTGAKTRENINKAFQKIYWVLYNYQKK-DYRGANL 233
Query: 218 HN 219
HN
Sbjct: 234 HN 235
>gi|255078440|ref|XP_002502800.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
gi|226518066|gb|ACO64058.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
Length = 240
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 106/154 (68%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I R EYNP +F IM+I P+TT L F S
Sbjct: 33 HPSGIVPQLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSS 92
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E + A+RK+AK++ +LG P +++ FKI N+V +CDV+FP++L+ L
Sbjct: 93 GKMVCTGAKTEALAREAARKYAKVISKLGFPAQFKDFKIQNMVGSCDVKFPIRLEGLAWS 152
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H F+ YEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 153 HGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKI 186
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R EYNP +F IM+I P+TT L F SGK++ GAK
Sbjct: 43 NIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKMVCTGAKT 102
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E + A+RK+AK++ +LG P + F +NMVG+ V P+ L + S +++Y P
Sbjct: 103 EALAREAARKYAKVISKLGFPAQFKDFKIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPE 162
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ P+ L F SGK+++ G K+ D A +L +
Sbjct: 163 LFPGLIYRMQMPKIVLLIFVSGKIVLTGGKNRDDIYKAFENIYPVLTEF 211
>gi|167518271|ref|XP_001743476.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778575|gb|EDQ92190.1| predicted protein [Monosiga brevicollis MX1]
Length = 181
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 126 FFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+ RN+V T++ C LDL I + R +EY+P +F +IM+I P TT L F SGK++ G
Sbjct: 6 YCRNLVATVTFNCKLDLKHIANNARNAEYSPKRFSAVIMRIREPHTTALIFSSGKMICTG 65
Query: 186 AKHEHDCKLASRKFAKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
AK E D A+RK+A+I+K+LG+ ++++ F+I N+V +CDVRFP++L+ L H F +
Sbjct: 66 AKSEDDAWRATRKYAQIIKKLGYGELRHENFQIQNMVGSCDVRFPIRLEGLAANHQCFCT 125
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPGL+YRMVKP+VVLLIFV+G++
Sbjct: 126 YEPEIFPGLVYRMVKPKVVLLIFVSGKV 153
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T++ C LDL I + R +EY+P +F +IM+I P TT L F SGK++ GAK
Sbjct: 9 NLVATVTFNCKLDLKHIANNARNAEYSPKRFSAVIMRIREPHTTALIFSSGKMICTGAKS 68
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E D A+RK+A+I+K+LG+ E+ F +NMVG+ V P+ L + + + + Y P
Sbjct: 69 EDDAWRATRKYAQIIKKLGYGELRHENFQIQNMVGSCDVRFPIRLEGLAANHQCFCTYEP 128
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
F GL+ +++ P+ L F SGK+++ GAK A IL+Q P
Sbjct: 129 EIFPGLVYRMVKPKVVLLIFVSGKVVVTGAKSRQTIHDAINAIYSILQQFRKP 181
>gi|196001097|ref|XP_002110416.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
gi|190586367|gb|EDV26420.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
Length = 220
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 107/145 (73%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T ++ C L L I S+ R +EYNP +F LIM+I +P+TT L F SGK++ GAK
Sbjct: 36 QNVVSTFNLKCSLKLRDIASKARNAEYNPKRFAALIMRIRDPKTTALIFSSGKIVCAGAK 95
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+LA+RK A+I+++LG+P K+ F+I NIV +CDV+F + L+ L HS F SYEP
Sbjct: 96 SPELSRLAARKHARIIQKLGYPAKFTQFQIQNIVGSCDVKFHISLEGLVVTHSHFCSYEP 155
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
ELFPGLIYRMV+P+VVLL+FV+G+I
Sbjct: 156 ELFPGLIYRMVQPKVVLLVFVSGKI 180
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++ C L L I S+ R +EYNP +F LIM+I +P+TT L F SGK++ GAK
Sbjct: 37 NVVSTFNLKCSLKLRDIASKARNAEYNPKRFAALIMRIRDPKTTALIFSSGKIVCAGAKS 96
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
+LA+RK A+I+++LG+P + F +N+VG+ V + L + + + Y P
Sbjct: 97 PELSRLAARKHARIIQKLGYPAKFTQFQIQNIVGSCDVKFHISLEGLVVTHSHFCSYEPE 156
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 211
F GLI +++ P+ L F SGK+++ GAK E D A +K +L+ P K
Sbjct: 157 LFPGLIYRMVQPKVVLLVFVSGKIVLTGAKVEEDILEAFKKIYPMLRAFMKPQK 210
>gi|413933837|gb|AFW68388.1| hypothetical protein ZEAMMB73_647229, partial [Zea mays]
Length = 189
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 112/157 (71%)
Query: 116 QLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLA 175
+ G P I +N+V T+++ C +DL + + R +EYNP +F IM+I P+TT L
Sbjct: 6 ESGVPSGIVPNLQNIVSTVNLDCKVDLQHVANSARNAEYNPRRFGAAIMRIREPKTTALI 65
Query: 176 FQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL 235
F +GK++ GAK E D +LA+RKFA+I+++LG P +++ FK+ NIV +CD++FP++L+ L
Sbjct: 66 FATGKMVCTGAKSEADSRLAARKFARIVQKLGFPARFKDFKVQNIVGSCDLKFPIRLEGL 125
Query: 236 HHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
++YEPE+FPGL+YRMV P+VV+L+FV+G+I
Sbjct: 126 ALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKI 162
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C +DL + + R +EYNP +F IM+I P+TT L F +GK++ GAK
Sbjct: 19 NIVSTVNLDCKVDLQHVANSARNAEYNPRRFGAAIMRIREPKTTALIFATGKMVCTGAKS 78
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE-YNPG 157
E D +LA+RKFA+I+++LG P F +N+VG+ + P+ L + S Y P
Sbjct: 79 EADSRLAARKFARIVQKLGFPARFKDFKVQNIVGSCDLKFPIRLEGLALASGLSATYEPE 138
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GL+ ++++P+ L F SGK+++ GAK + + A K +L Q
Sbjct: 139 IFPGLVYRMVDPKVVILVFVSGKIVLTGAKVQEEICAAFEKIHPMLVQF 187
>gi|358335036|dbj|GAA53489.1| transcription initiation factor TFIID TATA-box-binding protein
[Clonorchis sinensis]
Length = 436
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 107/146 (73%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+ +GC L+L QI R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 247 LQNIVCTVYLGCKLNLKQIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 306
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG ++ FKI N+V +CDVRF ++L+ L QF++YE
Sbjct: 307 KSEERARLAARKYARIIQKLGFEAHFKEFKIQNMVGSCDVRFHIRLEGLVLAQGQFATYE 366
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM KP++VLLIFV+G+I
Sbjct: 367 PELFPGLIYRMTKPKIVLLIFVSGKI 392
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ +GC L+L QI R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 249 NIVCTVYLGCKLNLKQIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 308
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
E +LA+RK+A+I+++LG E F F +NMVG+ V + L + ++ +++ Y P
Sbjct: 309 EERARLAARKYARIIQKLGF-EAHFKEFKIQNMVGSCDVRFHIRLEGLVLAQGQFATYEP 367
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 211
F GLI ++ P+ L F SGK+++ GAK + A R ILK P K
Sbjct: 368 ELFPGLIYRMTKPKIVLLIFVSGKIVLTGAKVRDEIYEAFRNIYPILKNFRKPDK 422
>gi|302508189|ref|XP_003016055.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
gi|291179624|gb|EFE35410.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
Length = 295
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 110/170 (64%), Gaps = 24/170 (14%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPG------------------------KFHGL 162
+N+V T+++ C LDL I R +EYNP +F +
Sbjct: 84 LQNIVATVNLDCRLDLKTIALHARNAEYNPKVGAGEVACLLFSFHTQVKIYILFVRFAAV 143
Query: 163 IMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVC 222
IM+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV
Sbjct: 144 IMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVG 203
Query: 223 TCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+CD++FP++L+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 204 SCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKI 253
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 29/204 (14%)
Query: 13 GSACIGGGQACFCLIRGGQKNRRG---TNLNMVGTISVGCPLDLNQINSRVRYSEYNPG- 68
GS GG A G G T N+V T+++ C LDL I R +EYNP
Sbjct: 56 GSGPGGGTPATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKV 115
Query: 69 -----------------------KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKL 105
+F +IM+I P+TT L F SGK+++ GAK E D KL
Sbjct: 116 GAGEVACLLFSFHTQVKIYILFVRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKL 175
Query: 106 ASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLI 163
ASRK+A+I+++LG + + F +N+VG+ + P+ L + SR +S Y P F GLI
Sbjct: 176 ASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLI 235
Query: 164 MKILNPRTTCLAFQSGKLLILGAK 187
+++ P+ L F SGK+++ GAK
Sbjct: 236 YRMMKPKIVLLIFVSGKIVLTGAK 259
>gi|256089271|ref|XP_002580736.1| TATA-box binding protein [Schistosoma mansoni]
gi|350646100|emb|CCD59202.1| TATA-box binding protein, putative [Schistosoma mansoni]
Length = 271
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 106/146 (72%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+ +GC L+L I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 80 LQNIVCTVYLGCKLNLKNIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 139
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E +LA+RK+A+I+++LG ++ FKI N+V +CDVRF ++L+ L QF++YE
Sbjct: 140 KSEEQARLAARKYARIIQRLGFEAHFKEFKIQNMVGSCDVRFHIRLEGLVLSQGQFATYE 199
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM KP++VLL+FV+G+I
Sbjct: 200 PELFPGLIYRMTKPKIVLLVFVSGKI 225
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ +GC L+L I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 82 NIVCTVYLGCKLNLKNIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 141
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
E +LA+RK+A+I+++LG E F F +NMVG+ V + L + S+ +++ Y P
Sbjct: 142 EEQARLAARKYARIIQRLGF-EAHFKEFKIQNMVGSCDVRFHIRLEGLVLSQGQFATYEP 200
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI ++ P+ L F SGK+++ GAK + A ILK
Sbjct: 201 ELFPGLIYRMTKPKIVLLVFVSGKIVLTGAKVREEIYEAFNNIYPILK 248
>gi|256084656|ref|XP_002578543.1| TATA-box binding protein [Schistosoma mansoni]
gi|353228683|emb|CCD74854.1| putative tata-box binding protein [Schistosoma mansoni]
Length = 211
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 105/144 (72%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
NMV T+ +GCP++L ++ VR +EYNP +F G++M++ PR TCL F +G+++ GA+
Sbjct: 39 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVMRLREPRVTCLVFGTGRMVCTGARS 98
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E D L SRK A+IL++LG +K+ F I N+V D++FP++L+ + + Q + YEPE
Sbjct: 99 ESDANLGSRKCARILQRLGFDVKFMNFTIQNMVGLADLKFPIRLEGVQLANEQMTQYEPE 158
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
+FP LIYR++KPR+V+LIFVNG+I
Sbjct: 159 IFPALIYRIIKPRLVMLIFVNGKI 182
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 3/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
NMV T+ +GCP++L ++ VR +EYNP +F G++M++ PR TCL F +G+++ GA+
Sbjct: 39 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVMRLREPRVTCLVFGTGRMVCTGARS 98
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D L SRK A+IL++LG + + F +NMVG + P+ L + + + ++Y P
Sbjct: 99 ESDANLGSRKCARILQRLGFDVKFMNFTIQNMVGLADLKFPIRLEGVQLANEQMTQYEPE 158
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK-HEH 190
F LI +I+ PR L F +GK+++ GAK EH
Sbjct: 159 IFPALIYRIIKPRLVMLIFVNGKIVMTGAKSREH 192
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
IHN+V T D+ P++L L +H + + Y P FPG++ R+ +PRV L+F GR+
Sbjct: 37 IHNMVSTVDLGCPIELRKL-VLHVRSAEYNPRRFPGVVMRLREPRVTCLVFGTGRM 91
>gi|167386161|ref|XP_001737643.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165899478|gb|EDR26064.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 216
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 112/162 (69%), Gaps = 2/162 (1%)
Query: 113 ILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPR 170
I+KQL P EI +N+V T+ + C ++L + RVR +EYNP +F LI++I NP+
Sbjct: 25 IIKQLPVPTNEIEKPVIQNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPK 84
Query: 171 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPV 230
TT L F SGKL++ G K D +LA RK+A+IL++LG+ +K+ FKI N+V +CD++F +
Sbjct: 85 TTALVFHSGKLVVTGGKTVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAI 144
Query: 231 KLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
L L + + + YEPE+FPG++YR+ P++VLLIF +G+I
Sbjct: 145 SLKELIQLAPKITKYEPEIFPGVVYRLADPKMVLLIFASGKI 186
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + C ++L + RVR +EYNP +F LI++I NP+TT L F SGKL++ G K
Sbjct: 43 NIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTGGKT 102
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
D +LA RK+A+IL++LG+ + F F +N+V + + + L + I + ++Y P
Sbjct: 103 VDDSRLAGRKYARILQRLGY-NVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITKYEP 161
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
F G++ ++ +P+ L F SGK++ G K A + KIL Q+ +
Sbjct: 162 EIFPGVVYRLADPKMVLLIFASGKIVFTGGKEIEQINKAFSEIYKILLQVAN 213
>gi|224009416|ref|XP_002293666.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
gi|220970338|gb|EED88675.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
Length = 167
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
Query: 133 TISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
T +G LDL QI R R +E+NP +F +IM++ PR T L F SG+++I G K H+C
Sbjct: 1 TADLGVRLDLKQIALRCRNTEFNPRRFAAVIMRLREPRATALLFSSGRMVITGTKSSHNC 60
Query: 193 KLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFP 251
LA++KFA IL+++G P + FKI N+V T DV FP++L+ + + H FSSYEPELFP
Sbjct: 61 SLATKKFAYILERVGFQPAGFIDFKIQNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFP 120
Query: 252 GLIYRMVKPRVVLLIFVNGRI 272
GLIYR+V+PRVVLLIFV+G++
Sbjct: 121 GLIYRLVQPRVVLLIFVSGKV 141
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 44 TISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 103
T +G LDL QI R R +E+NP +F +IM++ PR T L F SG+++I G K H+C
Sbjct: 1 TADLGVRLDLKQIALRCRNTEFNPRRFAAVIMRLREPRATALLFSSGRMVITGTKSSHNC 60
Query: 104 KLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFH 160
LA++KFA IL+++G F F+ N+VGT+ VG P+ L + + +S Y P F
Sbjct: 61 SLATKKFAYILERVGFQPAGFIDFKIQNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFP 120
Query: 161 GLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
GLI +++ PR L F SGK++I GAK E A RK +L +
Sbjct: 121 GLIYRLVQPRVVLLIFVSGKVVITGAKTEEQMVEALRKVYPVLVEF 166
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F SGK++I GAK
Sbjct: 88 NVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVSGKVVITGAK 147
Query: 99 HEHDCKLASRKFAKILKQL 117
E A RK +L +
Sbjct: 148 TEEQMVEALRKVYPVLVEF 166
>gi|226466670|emb|CAX69470.1| TATA box binding protein like 2 [Schistosoma japonicum]
Length = 212
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 105/144 (72%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
NMV T+ +GCP++L ++ VR +EYNP +F G+++++ PR TCL F +G+++ GA+
Sbjct: 40 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTGARS 99
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E D L SRK A+I+++LG +K+ F I N+V D+RFPV+L+ + + Q + YEPE
Sbjct: 100 EADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQYEPE 159
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
+FP LIYR++KPR+V+LIFVNG++
Sbjct: 160 IFPALIYRIIKPRLVMLIFVNGKV 183
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 97/154 (62%), Gaps = 3/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
NMV T+ +GCP++L ++ VR +EYNP +F G+++++ PR TCL F +G+++ GA+
Sbjct: 40 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTGARS 99
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D L SRK A+I+++LG + + F +NMVG + P+ L + + + ++Y P
Sbjct: 100 EADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQYEPE 159
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK-HEH 190
F LI +I+ PR L F +GK+++ GAK EH
Sbjct: 160 IFPALIYRIIKPRLVMLIFVNGKVVMTGAKSREH 193
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
IHN+V T D+ P++L L +H + + Y P FPG++ R+ +PRV L+F GR+
Sbjct: 38 IHNMVSTVDLGCPIELRKL-VLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRM 92
>gi|323447675|gb|EGB03588.1| hypothetical protein AURANDRAFT_33824 [Aureococcus anophagefferens]
Length = 274
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 108/167 (64%)
Query: 106 ASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMK 165
A+ F HP +N+V T+++ +DL + R +EYNP KF +IM+
Sbjct: 29 AANDFGDDDAPWSHPSGATIDVQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMR 88
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 225
+ PR T L F +GK++I GAK E + +RKFA I++++G K+ FK+ N+V T D
Sbjct: 89 VREPRCTALVFSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKFGEFKVQNMVATSD 148
Query: 226 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FP++L+AL + H++FSSYEPELFPGLIYR+V P+ VLL+FV+GR+
Sbjct: 149 AGFPIRLEALVYAHAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRM 195
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ +DL + R +EYNP KF +IM++ PR T L F +GK++I GAK
Sbjct: 52 NVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGAKS 111
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E + +RKFA I++++G P+ F +NMV T G P+ L + + ++S Y P
Sbjct: 112 EDAARRGARKFAAIIRKIGFQPKFGEFKVQNMVATSDAGFPIRLEALVYAHAKFSSYEPE 171
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ P+T L F SG++++ G K + A K +L +
Sbjct: 172 LFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEF 220
>gi|76155499|gb|AAX26791.2| SJCHGC06425 protein [Schistosoma japonicum]
Length = 227
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 105/144 (72%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
NMV T+ +GCP++L ++ VR +EYNP +F G+++++ PR TCL F +G+++ GA+
Sbjct: 55 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTGARS 114
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E D L SRK A+I+++LG +K+ F I N+V D+RFPV+L+ + + Q + YEPE
Sbjct: 115 EADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQYEPE 174
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
+FP LIYR++KPR+V+LIFVNG++
Sbjct: 175 IFPALIYRIIKPRLVMLIFVNGKV 198
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 97/154 (62%), Gaps = 3/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
NMV T+ +GCP++L ++ VR +EYNP +F G+++++ PR TCL F +G+++ GA+
Sbjct: 55 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTGARS 114
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E D L SRK A+I+++LG + + F +NMVG + P+ L + + + ++Y P
Sbjct: 115 EADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQYEPE 174
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK-HEH 190
F LI +I+ PR L F +GK+++ GAK EH
Sbjct: 175 IFPALIYRIIKPRLVMLIFVNGKVVMTGAKSREH 208
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
IHN+V T D+ P++L L +H + + Y P FPG++ R+ +PRV L+F GR+
Sbjct: 53 IHNMVSTVDLGCPIELRKL-VLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRM 107
>gi|14423952|sp|Q9NHP5.1|TBP_DROVI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|8050582|gb|AAF71711.1|AF220262_1 TATA box-binding protein [Drosophila virilis]
Length = 349
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 104/146 (71%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 175 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAPVIMRIREPRTTALIFSSGKMVCTGA 234
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D +LA+RK+A+I+++LG K+ KI N+V CDV+FP++L+ L H FS YE
Sbjct: 235 KGEDDSRLAARKYARIIQKLGFRAKFLDLKIQNMVGLCDVKFPIRLEGLVLTHCNFSRYE 294
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRMV+PR+VLL+ G++
Sbjct: 295 PELFPGLIYRMVRPRIVLLLPAPGKV 320
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 177 NIVSTVNLCCKLDLKKIALHARNAEYNPKRFAPVIMRIREPRTTALIFSSGKMVCTGAKG 236
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D +LA+RK+A+I+++LG + + +NMVG V P+ L + + +S Y P
Sbjct: 237 EDDSRLAARKYARIIQKLGFRAKFLDLKIQNMVGLCDVKFPIRLEGLVLTHCNFSRYEPE 296
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI +++ PR L GK+++ GAK + A K ILK+
Sbjct: 297 LFPGLIYRMVRPRIVLLLPAPGKVVLTGAKVRQEIYDAFDKIFSILKKF 345
>gi|331686250|gb|AED87005.1| tata box binding protein [Stylonychia lemnae]
Length = 285
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GA
Sbjct: 103 LQNIVSTANLGIKLDLRKIALNCRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGA 162
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K E K A++K++K +K++G + Q FKI NIV +CDVRFP+ L++L H +FS Y
Sbjct: 163 KSEEFSKDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVRFPISLESLSQEHDKFSQY 222
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE+FPGLIYRM P++VLLIF +G+I
Sbjct: 223 EPEIFPGLIYRMANPKIVLLIFASGKI 249
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 105 NIVSTANLGIKLDLRKIALNCRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKS 164
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSR-VRYSEYNP 156
E K A++K++K +K++G ++ F +N+VG+ V P+ L ++ ++S+Y P
Sbjct: 165 EEFSKDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVRFPISLESLSQEHDKFSQYEP 224
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI ++ NP+ L F SGK+++ GAK+++D LA +L++
Sbjct: 225 EIFPGLIYRMANPKIVLLIFASGKIVLTGAKNKNDITLAFNNIYPVLQKF 274
>gi|440295403|gb|ELP88316.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 236
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 122/191 (63%), Gaps = 9/191 (4%)
Query: 82 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLD 141
TT A K+ +G + E + R+F + ++ P +N+V T+ + C ++
Sbjct: 25 TTKNAEGDEKIEKVGTEEEE----SFREFPVDINKIELP-----IIQNIVATVELDCNVN 75
Query: 142 LNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 201
L + RVR +EYNP +F LI++I NP+TT L F SGKL+I G K D +LA RK+A+
Sbjct: 76 LQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVITGGKTIDDSRLAGRKYAR 135
Query: 202 ILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPR 261
IL++LG+ +K+ FK+ N+V +CD++F + L L + + + YEPE+FPG++YR+ +P+
Sbjct: 136 ILQRLGYEVKFNHFKVQNVVASCDMKFAISLRDLITLSPKNTKYEPEIFPGVVYRLAEPK 195
Query: 262 VVLLIFVNGRI 272
+VLLIF +G+I
Sbjct: 196 MVLLIFASGKI 206
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + C ++L + RVR +EYNP +F LI++I NP+TT L F SGKL+I G K
Sbjct: 63 NIVATVELDCNVNLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVITGGKT 122
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
D +LA RK+A+IL++LG+ E+ F F +N+V + + + L I + ++Y P
Sbjct: 123 IDDSRLAGRKYARILQRLGY-EVKFNHFKVQNVVASCDMKFAISLRDLITLSPKNTKYEP 181
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
F G++ ++ P+ L F SGK++ G K A + KIL Q+
Sbjct: 182 EIFPGVVYRLAEPKMVLLIFASGKIVFTGGKEVEQINQAFKTIYKILLQVA 232
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 63 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPE 121
++Y P F G++ ++ P+ L F SGK++ G K A + KIL Q+ E
Sbjct: 177 TKYEPEIFPGVVYRLAEPKMVLLIFASGKIVFTGGKEVEQINQAFKTIYKILLQVASIE 235
>gi|255579166|ref|XP_002530430.1| TATA-box binding protein, putative [Ricinus communis]
gi|223530038|gb|EEF31961.1| TATA-box binding protein, putative [Ricinus communis]
Length = 193
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 108/146 (73%), Gaps = 1/146 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+ T+++ C LDL +I SEY+P +F + M+I +P+TT L F SG+++ GAK
Sbjct: 21 QNIASTVNLDCKLDLKRIALHSLNSEYDPKRFSAVTMRIRHPQTTALIFASGRVVCTGAK 80
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA-LHHVHSQFSSYE 246
E D KLA RKFA+I+++LG P K++ FKI NIV +CD++FP++L+ ++ H+ FS YE
Sbjct: 81 TEEDSKLAMRKFARIVQKLGFPAKFKDFKIQNIVASCDMKFPLRLEKFIYTKHAAFSRYE 140
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
P++FPGLIYRM + R+++LIFV+G++
Sbjct: 141 PDVFPGLIYRMKESRIIMLIFVSGKV 166
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 3/156 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+ T+++ C LDL +I SEY+P +F + M+I +P+TT L F SG+++ GAK
Sbjct: 22 NIASTVNLDCKLDLKRIALHSLNSEYDPKRFSAVTMRIRHPQTTALIFASGRVVCTGAKT 81
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI--NSRVRYSEYNP 156
E D KLA RKFA+I+++LG P + F +N+V + + PL L + +S Y P
Sbjct: 82 EEDSKLAMRKFARIVQKLGFPAKFKDFKIQNIVASCDMKFPLRLEKFIYTKHAAFSRYEP 141
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
F GLI ++ R L F SGK++I GAK +
Sbjct: 142 DVFPGLIYRMKESRIIMLIFVSGKVVITGAKKTDEA 177
>gi|313226921|emb|CBY22066.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 98/125 (78%)
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
R R +EYNP +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+++++LG
Sbjct: 2 RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEKSRLAARKYARVIQKLG 61
Query: 208 HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIF 267
P K++ FKI N+V + DV+F ++L+ L H+QF+S+EPELFPGL+YRM+KP++VLLIF
Sbjct: 62 FPAKFKDFKIQNMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLIF 121
Query: 268 VNGRI 272
V+G++
Sbjct: 122 VSGKV 126
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 59 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 118
R R +EYNP +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+++++LG
Sbjct: 2 RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEKSRLAARKYARVIQKLG 61
Query: 119 HP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAF 176
P + F +NMVG++ V + L Q + + +++ + P F GL+ +++ P+ L F
Sbjct: 62 FPAKFKDFKIQNMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLIF 121
Query: 177 QSGKLLILGAKHEHDCKLASRKFAKILKQL 206
SGK+++ GAK + A IL++
Sbjct: 122 VSGKVVLTGAKQRKEIDDAFNNIYPILRKF 151
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 40 NMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
NMVG++ V + L Q + + +++ + P F GL+ +++ P+ L F SGK+++ GAK
Sbjct: 73 NMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLIFVSGKVVLTGAK 132
Query: 99 HEHDCKLASRKFAKILKQL 117
+ A IL++
Sbjct: 133 QRKEIDDAFNNIYPILRKF 151
>gi|403333508|gb|EJY65856.1| Tata box binding protein [Oxytricha trifallax]
Length = 500
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 126 FFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+N+V T ++G LDL +I R +EYNP +F +IM+I +P+TT L F SGK++ G
Sbjct: 311 ILQNIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCTG 370
Query: 186 AKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
AK E + A++K++K +K++G + Q FKI NIV +CDV FP+ L++L H +FS
Sbjct: 371 AKSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFSQ 430
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPGLIYRM P++VLLIF +G+I
Sbjct: 431 YEPEIFPGLIYRMATPKIVLLIFASGKI 458
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 104/167 (62%), Gaps = 3/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++G LDL +I R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 314 NIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCTGAKS 373
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSR-VRYSEYNP 156
E + A++K++K +K++G ++ F +N+VG+ VG P+ L ++S ++S+Y P
Sbjct: 374 EEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFSQYEP 433
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GLI ++ P+ L F SGK+++ GAK+++D K A +L
Sbjct: 434 EIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 480
>gi|452819885|gb|EME26936.1| transcription initiation factor TFIID TATA-box-binding protein
[Galdieria sulphuraria]
Length = 206
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 106/146 (72%), Gaps = 2/146 (1%)
Query: 129 NMVGTISVGCP-LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V T+++G LDL I + R +EYNP +F +IM++ P+TT L F SGK+++ GAK
Sbjct: 32 NLVCTVNLGVRNLDLKTIAIKARNAEYNPKRFQAVIMRVREPKTTALIFSSGKIVVTGAK 91
Query: 188 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E + K A++KF I+++ G+ K+ FK+ N+V T V FP++L+AL H+QF +YE
Sbjct: 92 SEEESKRAAKKFVVIVRKCGYEEAKFSEFKVQNVVGTSAVDFPIRLEALAQAHTQFCTYE 151
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGL+YRM++P++VLLIFV+G++
Sbjct: 152 PELFPGLVYRMMEPKIVLLIFVSGKL 177
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 4/169 (2%)
Query: 39 LNMVGTISVGCP-LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
+N+V T+++G LDL I + R +EYNP +F +IM++ P+TT L F SGK+++ GA
Sbjct: 31 VNLVCTVNLGVRNLDLKTIAIKARNAEYNPKRFQAVIMRVREPKTTALIFSSGKIVVTGA 90
Query: 98 KHEHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEY 154
K E + K A++KF I+++ G+ E F F +N+VGT +V P+ L + + ++ Y
Sbjct: 91 KSEEESKRAAKKFVVIVRKCGYEEAKFSEFKVQNVVGTSAVDFPIRLEALAQAHTQFCTY 150
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
P F GL+ +++ P+ L F SGKL++ G K A K +L
Sbjct: 151 EPELFPGLVYRMMEPKIVLLIFVSGKLVLTGGKTRKQIDEALEKIKNVL 199
>gi|403354886|gb|EJY77003.1| Tata box binding protein [Oxytricha trifallax]
Length = 502
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 100/146 (68%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T + GC LDL QI R EYNP +F IM+I P+TT L FQSGK++ GA
Sbjct: 301 LQNIVATCNFGCKLDLRQIALNARNCEYNPKRFAAAIMRIREPKTTALIFQSGKMVCTGA 360
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + A +++AK ++++G ++ + FKI N+V + D FP+ L+ L + H +FS+YE
Sbjct: 361 KDEEKSRTACKQYAKAVRKIGFNVQMKEFKIQNVVASHDCGFPISLEGLSNEHDKFSTYE 420
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM P++V+LIF +G+I
Sbjct: 421 PELFPGLIYRMASPKLVMLIFASGKI 446
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T + GC LDL QI R EYNP +F IM+I P+TT L FQSGK++ GAK
Sbjct: 303 NIVATCNFGCKLDLRQIALNARNCEYNPKRFAAAIMRIREPKTTALIFQSGKMVCTGAKD 362
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPG 157
E + A +++AK ++++G + ++ F +N+V + G P+ L + N ++S Y P
Sbjct: 363 EEKSRTACKQYAKAVRKIGFNVQMKEFKIQNVVASHDCGFPISLEGLSNEHDKFSTYEPE 422
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI ++ +P+ L F SGK++ GAK + A R +L+
Sbjct: 423 LFPGLIYRMASPKLVMLIFASGKIVFTGAKTREQIRDAYRNIDPVLR 469
>gi|414864598|tpg|DAA43155.1| TPA: hypothetical protein ZEAMMB73_034825 [Zea mays]
Length = 212
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 112/178 (62%), Gaps = 21/178 (11%)
Query: 116 QLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG------------------ 157
+ G P I +N+V T+++ C +DL + + R +EYNP
Sbjct: 6 ESGVPSGIVPILQNIVSTVNLECKVDLQHVANSARNAEYNPRVCIIISAAAALFFFFFAW 65
Query: 158 ---KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQG 214
+F IM+I P+TT L F SGK++ GAK E D +LA+RKFA+I+++LG P +++
Sbjct: 66 NYIRFAAAIMRIREPKTTTLIFASGKMVCTGAKSEADSRLAARKFARIVQKLGSPARFKD 125
Query: 215 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FK+ NIV +CD++FP++L+ L ++YEPE+FPGL+YRMV P+VV+L+FV+G+I
Sbjct: 126 FKVQNIVGSCDLKFPIRLEGLALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKI 183
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPG---------------------KFHGLIMKIL 78
N+V T+++ C +DL + + R +EYNP +F IM+I
Sbjct: 19 NIVSTVNLECKVDLQHVANSARNAEYNPRVCIIISAAAALFFFFFAWNYIRFAAAIMRIR 78
Query: 79 NPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVG 137
P+TT L F SGK++ GAK E D +LA+RKFA+I+++LG P F +N+VG+ +
Sbjct: 79 EPKTTTLIFASGKMVCTGAKSEADSRLAARKFARIVQKLGSPARFKDFKVQNIVGSCDLK 138
Query: 138 CPLDLNQINSRVRYSE-YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 196
P+ L + S Y P F GL+ ++++P+ L F SGK+++ GAK + A
Sbjct: 139 FPIRLEGLALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLTGAKVREEICAAF 198
Query: 197 RKFAKILKQL 206
K +L Q
Sbjct: 199 EKIHPMLVQF 208
>gi|331686256|gb|AED87008.1| tata box binding protein [Nyctotherus ovalis]
Length = 195
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 103/146 (70%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++ C LDL +I + + +EYNP +F +IM+I NP+TT L F SGK++ GA
Sbjct: 17 LENIVSTVNLACELDLRKITLQAKNAEYNPKRFAAVIMRIRNPKTTALIFSSGKIVCTGA 76
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E D + A+ K+AK +K+LG +K++ F I N+V +C V F + LD L +++FS+Y+
Sbjct: 77 KSETDSRTAAMKYAKTIKKLGFNVKFKEFTIQNMVASCGVEFGINLDELLLSYNRFSTYD 136
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE+FPGLI+RM P++V LIF +G+I
Sbjct: 137 PEIFPGLIFRMEDPKIVFLIFSSGKI 162
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + + +EYNP +F +IM+I NP+TT L F SGK++ GAK
Sbjct: 19 NIVSTVNLACELDLRKITLQAKNAEYNPKRFAAVIMRIRNPKTTALIFSSGKIVCTGAKS 78
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D + A+ K+AK +K+LG + + F +NMV + V ++L++ + S R+S Y+P
Sbjct: 79 ETDSRTAAMKYAKTIKKLGFNVKFKEFTIQNMVASCGVEFGINLDELLLSYNRFSTYDPE 138
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
F GLI ++ +P+ L F SGK+++ GAK
Sbjct: 139 IFPGLIFRMEDPKIVFLIFSSGKIILTGAKQ 169
>gi|378755540|gb|EHY65566.1| TATA-binding protein, partial [Nematocida sp. 1 ERTm2]
Length = 159
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 101/141 (71%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP + +N+V T+++ C LDL I R +EYNP +F +I++I PRTT L F S
Sbjct: 19 HPSGLIPTIQNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFAS 78
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK+++ GA+ E D K+A++K++ I+++LG+P+++ FKI NIV +CD +F ++L+ L
Sbjct: 79 GKMVVTGARSEEDSKMAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFG 138
Query: 239 HSQFSSYEPELFPGLIYRMVK 259
HS +SSYEPELFPGLIYRMVK
Sbjct: 139 HSNYSSYEPELFPGLIYRMVK 159
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +I++I PRTT L F SGK+++ GA+
Sbjct: 29 NIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKMVVTGARS 88
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E D K+A++K++ I+++LG+P F +N+V + + L + YS Y P
Sbjct: 89 EEDSKMAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFGHSNYSSYEPE 148
Query: 158 KFHGLIMKIL 167
F GLI +++
Sbjct: 149 LFPGLIYRMV 158
>gi|331686248|gb|AED87004.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 302
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 126 FFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+N+V T ++G LDL +I R +EYNP +F +IM+I +P+TT L F SGK++ G
Sbjct: 113 ILQNIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCTG 172
Query: 186 AKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
AK E + A++K++K +K++G + Q FKI NIV +CDV FP+ L++L H +FS
Sbjct: 173 AKSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFSQ 232
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPGLIYRM P++VLLIF +G+I
Sbjct: 233 YEPEIFPGLIYRMATPKIVLLIFASGKI 260
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 104/167 (62%), Gaps = 3/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++G LDL +I R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 116 NIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCTGAKS 175
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSR-VRYSEYNP 156
E + A++K++K +K++G ++ F +N+VG+ VG P+ L ++S ++S+Y P
Sbjct: 176 EEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFSQYEP 235
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GLI ++ P+ L F SGK+++ GAK+++D K A +L
Sbjct: 236 EIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 282
>gi|219113475|ref|XP_002186321.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583171|gb|ACI65791.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 203
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 103/146 (70%), Gaps = 1/146 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+NM T+++G LDL +I + R +E+NP +F +IM++ PR T L F SGK+ + G K
Sbjct: 5 QNMSSTVNLGTRLDLKKIALKCRNTEFNPRRFGAVIMRLREPRATALIFSSGKMCVTGVK 64
Query: 188 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
H+ LA++KFA I++++G P + FK+ NIV T DV FP++L+ L + HS F+SYE
Sbjct: 65 STHNANLAAKKFAYIVERVGFKPKENIDFKVQNIVGTADVGFPIRLEGLVYAHSAFASYE 124
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYR V PRVV LIFV+G+I
Sbjct: 125 PELFPGLIYRFVNPRVVFLIFVSGKI 150
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 3/170 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
NM T+++G LDL +I + R +E+NP +F +IM++ PR T L F SGK+ + G K
Sbjct: 6 NMSSTVNLGTRLDLKKIALKCRNTEFNPRRFGAVIMRLREPRATALIFSSGKMCVTGVKS 65
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
H+ LA++KFA I++++G E I F +N+VGT VG P+ L + + ++ Y P
Sbjct: 66 THNANLAAKKFAYIVERVGFKPKENIDFKVQNIVGTADVGFPIRLEGLVYAHSAFASYEP 125
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F GLI + +NPR L F SGK++I GAK E D A K +L +
Sbjct: 126 ELFPGLIYRFVNPRVVFLIFVSGKIVITGAKKEMDLAHALTKLFPVLMEF 175
>gi|407813853|gb|AFU35092.1| TATA box binding protein, partial [Tetranychus urticae]
Length = 122
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 92/117 (78%)
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGF 215
P +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+I+++LG K+ F
Sbjct: 1 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDF 60
Query: 216 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
KI N+V +CDV+FP++L+ L HSQFSSYEPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 117
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 77/122 (63%), Gaps = 2/122 (1%)
Query: 67 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFF 125
P +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+I+++LG + + F
Sbjct: 1 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDF 60
Query: 126 FFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 120
Query: 185 GA 186
GA
Sbjct: 121 GA 122
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 64 NMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 122
>gi|18483230|gb|AAL73974.1|AF466201_3 TATA-binding protein [Sorghum bicolor]
Length = 203
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 101/146 (69%), Gaps = 17/146 (11%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
FRN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK+
Sbjct: 60 FRNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM----- 114
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 115 ------------YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 162
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 163 PELFPGLIYRMKQPKIVLLIFVSGKI 188
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 19/150 (12%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK+
Sbjct: 62 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM------- 114
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
+A+I+++LG P + F +N+VG+ V P+ L + S +S Y P
Sbjct: 115 ----------YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 164
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
F GLI ++ P+ L F SGK+++ GAK
Sbjct: 165 LFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 194
>gi|341886263|gb|EGT42198.1| hypothetical protein CAEBREN_08601 [Caenorhabditis brenneri]
Length = 210
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 102/145 (70%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V TIS+G PLDL +I R EYNP +F IM+I NPRTT L F SGK++ GAK
Sbjct: 41 ENVVSTISLGVPLDLEKIALNGRNIEYNPSRFGAAIMRIRNPRTTGLIFSSGKIVCAGAK 100
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E C+ ASRK+A+I+++LG+ K F+I NIV TC+VRF + L + H +F ++EP
Sbjct: 101 SEESCRRASRKYARIVEKLGYQAKSVVFEIQNIVATCNVRFSINLGGISFTHLKFCTFEP 160
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E+FPGL YRM++P+V ++IF +G++
Sbjct: 161 EIFPGLHYRMLQPKVTIVIFPSGKL 185
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 106/168 (63%), Gaps = 2/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V TIS+G PLDL +I R EYNP +F IM+I NPRTT L F SGK++ GAK
Sbjct: 42 NVVSTISLGVPLDLEKIALNGRNIEYNPSRFGAAIMRIRNPRTTGLIFSSGKIVCAGAKS 101
Query: 100 EHDCKLASRKFAKILKQLGH-PEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPG 157
E C+ ASRK+A+I+++LG+ + + F +N+V T +V ++L I+ + +++ + P
Sbjct: 102 EESCRRASRKYARIVEKLGYQAKSVVFEIQNIVATCNVRFSINLGGISFTHLKFCTFEPE 161
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GL ++L P+ T + F SGKL I GAK++ D A R IL++
Sbjct: 162 IFPGLHYRMLQPKVTIVIFPSGKLNITGAKNKEDIDTAFRHIYPILRK 209
>gi|325182645|emb|CCA17100.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 270
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 105/144 (72%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+VGTI + L+L I R +EYNP +F ++M++ +P+TT L F SGK++I GA+
Sbjct: 78 NVVGTIDLKTRLELKTIALHARNAEYNPKRFCAVVMRLRDPKTTALIFSSGKIVITGARS 137
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E C+LA RKF +++++L P +++ F+I NI+ T DV F ++L+ + + H++F SYEPE
Sbjct: 138 EEFCRLAGRKFTRVIQKLHFPARFENFRIQNIMGTSDVHFSIRLEGILNDHARFCSYEPE 197
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGLIYR+ +P++ +LIFV+G+I
Sbjct: 198 LFPGLIYRLTEPKLTMLIFVSGKI 221
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+VGTI + L+L I R +EYNP +F ++M++ +P+TT L F SGK++I GA+
Sbjct: 77 MNVVGTIDLKTRLELKTIALHARNAEYNPKRFCAVVMRLRDPKTTALIFSSGKIVITGAR 136
Query: 99 HEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
E C+LA RKF +++++L P F +N++GT V + L I N R+ Y P
Sbjct: 137 SEEFCRLAGRKFTRVIQKLHFPARFENFRIQNIMGTSDVHFSIRLEGILNDHARFCSYEP 196
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GLI ++ P+ T L F SGK++ GAK A K +L
Sbjct: 197 ELFPGLIYRLTEPKLTMLIFVSGKIVFCGAKDSSHLDQAIEKMYPVL 243
>gi|222433591|gb|ACM51140.1| TATA box binding protein [Tetranychus cinnabarinus]
Length = 122
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 91/117 (77%)
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGF 215
P F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+I+++LG K+ F
Sbjct: 1 PKSFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDF 60
Query: 216 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
KI N+V +CDV+FP++L+ L HSQFSSYEPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 117
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 67 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFF 125
P F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+I+++LG + + F
Sbjct: 1 PKSFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDF 60
Query: 126 FFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 120
Query: 185 GA 186
GA
Sbjct: 121 GA 122
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 64 NMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 122
>gi|331686252|gb|AED87006.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 299
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 126 FFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+N+V T ++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ G
Sbjct: 110 ILQNIVSTANLGMKLDLRKIALNCRNAEYNPRRFAAVIMRIREPKTTALIFSSGKMVRTG 169
Query: 186 AKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
AK E + A++K++K +K++G + Q FKI NIV +CDV FP+ L++L H +FS
Sbjct: 170 AKSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQ 229
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPGLIYRM P++VLLIF +G+I
Sbjct: 230 YEPEIFPGLIYRMATPKIVLLIFASGKI 257
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 113 NIVSTANLGMKLDLRKIALNCRNAEYNPRRFAAVIMRIREPKTTALIFSSGKMVRTGAKS 172
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINS-RVRYSEYNP 156
E + A++K++K +K++G ++ F +N+VG+ VG P+ L ++S ++S+Y P
Sbjct: 173 EEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQYEP 232
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GLI ++ P+ L F SGK+++ GAK+++D K A +L
Sbjct: 233 EIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 279
>gi|47217167|emb|CAG11003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 283
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
+F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+++++LG P K+ FKI
Sbjct: 140 RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKI 199
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
N+V +CDVRFP++L+ L H QFSSYEPELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 200 QNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKV 254
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFF 127
+F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+++++LG P + + F
Sbjct: 140 RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKI 199
Query: 128 RNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 200 QNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 259
Query: 187 KHEHDCKLASRKFAKILK 204
K + A ILK
Sbjct: 260 KVRAEIYEAFENIYPILK 277
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 40 NMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK
Sbjct: 201 NMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 260
Query: 99 HEHDCKLASRKFAKILK 115
+ A ILK
Sbjct: 261 VRAEIYEAFENIYPILK 277
>gi|395330269|gb|EJF62653.1| TBP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 137
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 90/109 (82%)
Query: 164 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 223
M+I +P+TT L F SGK+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +
Sbjct: 1 MRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGS 60
Query: 224 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
CDV+FP++L+ L + H QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+I
Sbjct: 61 CDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKI 109
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 75 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGT 133
M+I +P+TT L F SGK+++ GAK E D +LASRK+A+I+++LG + F +N+VG+
Sbjct: 1 MRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGS 60
Query: 134 ISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 61 CDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 120
Query: 193 KLASRKFAKILKQLGHP 209
A +L + P
Sbjct: 121 YTAFNTIYTVLVEFRKP 137
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 56 NIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAK 115
Query: 99 HEHDCKLASRKFAKILKQLGHP 120
+ A +L + P
Sbjct: 116 VREEIYTAFNTIYTVLVEFRKP 137
>gi|308809792|ref|XP_003082205.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
gi|116060673|emb|CAL57151.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
Length = 258
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 21/166 (12%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPG---------------------KFHGLIMKI 166
RN+V T+++ C LDL I R EYNP +F IM+I
Sbjct: 50 RNIVATVNLDCKLDLKTIAFHARNVEYNPKVRRATRAPTLGEPTRRDENDFRFAAAIMRI 109
Query: 167 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDV 226
NP+TT L F SGK++ GAK E + A+RK+AK++ +LG P +++ FKI N+V +CDV
Sbjct: 110 RNPKTTALIFSSGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDV 169
Query: 227 RFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+FP++L+ L H F+ YEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 170 QFPIRLEGLAWQHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKI 215
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 26/196 (13%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPG---------------------KFHGLIMKIL 78
N+V T+++ C LDL I R EYNP +F IM+I
Sbjct: 51 NIVATVNLDCKLDLKTIAFHARNVEYNPKVRRATRAPTLGEPTRRDENDFRFAAAIMRIR 110
Query: 79 NPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVG 137
NP+TT L F SGK++ GAK E + A+RK+AK++ +LG P + F +NMVG+ V
Sbjct: 111 NPKTTALIFSSGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDVQ 170
Query: 138 CPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 196
P+ L + + +++Y P F GLI ++ P+ L F SGK+++ G K D A
Sbjct: 171 FPIRLEGLAWQHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLTGGKRREDIYQAF 230
Query: 197 RKFAKIL---KQLGHP 209
+L K+L P
Sbjct: 231 ENIYPVLTEFKKLAQP 246
>gi|331686254|gb|AED87007.1| tata box binding protein [Sterkiella nova]
Length = 301
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T ++G L L +I R +EYNP +F +IM+I P+TT L F+SGK++ GA
Sbjct: 113 LQNIVSTANLGVELKLREIAMNCRNAEYNPRRFAAVIMRIREPKTTALIFRSGKMVCTGA 172
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K E + A++K++K +K++G + Q FKI NIV +CDV FP+ L++L H +FS Y
Sbjct: 173 KSEELSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQY 232
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE+FPGLIYRM P++VLLIF +G+I
Sbjct: 233 EPEIFPGLIYRMATPKIVLLIFASGKI 259
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++G L L +I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 115 NIVSTANLGVELKLREIAMNCRNAEYNPRRFAAVIMRIREPKTTALIFRSGKMVCTGAKS 174
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINS-RVRYSEYNP 156
E + A++K++K +K++G ++ F +N+VG+ VG P+ L ++S ++S+Y P
Sbjct: 175 EELSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQYEP 234
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GLI ++ P+ L F SGK+++ GAK+++D K A +L
Sbjct: 235 EIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 281
>gi|424513557|emb|CCO66179.1| predicted protein [Bathycoccus prasinos]
Length = 289
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 107/187 (57%), Gaps = 33/187 (17%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG--------------------- 157
HP I +N+V T+++ C LDL I R EYNP
Sbjct: 42 HPSGIVPTLQNIVATVNLDCKLDLKTIAFHARNVEYNPKVCRAVGGKEIVKTDAFLHHSF 101
Query: 158 ------------KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
+F IM+I NP+TT L F SGK++ GAK E + A+RK+AK++ +
Sbjct: 102 HQTFRCALLNKQRFAAAIMRIRNPKTTALIFASGKMVCTGAKTEALAREAARKYAKVIIK 161
Query: 206 LGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLL 265
LG P +++ FKI N+V +CDV+FP++L+ L H F+ YEPELFPGLIYRM P++VLL
Sbjct: 162 LGFPAQFKDFKIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPELFPGLIYRMQMPKIVLL 221
Query: 266 IFVNGRI 272
IFV+G+I
Sbjct: 222 IFVSGKI 228
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 35/202 (17%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPG------------------------------- 68
N+V T+++ C LDL I R EYNP
Sbjct: 52 NIVATVNLDCKLDLKTIAFHARNVEYNPKVCRAVGGKEIVKTDAFLHHSFHQTFRCALLN 111
Query: 69 --KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFF 125
+F IM+I NP+TT L F SGK++ GAK E + A+RK+AK++ +LG P + F
Sbjct: 112 KQRFAAAIMRIRNPKTTALIFASGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDF 171
Query: 126 FFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+NMVG+ V P+ L + S +++Y P F GLI ++ P+ L F SGK+++
Sbjct: 172 KIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLT 231
Query: 185 GAKHEHDCKLASRKFAKILKQL 206
G K D A +L +
Sbjct: 232 GGKRREDIYQAFENIYPVLTEF 253
>gi|326497179|dbj|BAK02174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 137
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 87/109 (79%)
Query: 164 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 223
M+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 224 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
CD++FP++L+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 109
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 75 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGT 133
M+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F +N+VG+
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 134 ISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+ P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 120
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 56 NIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 115
Query: 99 HEHDC 103
+
Sbjct: 116 VREEI 120
>gi|119187015|ref|XP_001244114.1| hypothetical protein CIMG_03555 [Coccidioides immitis RS]
Length = 137
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 87/109 (79%)
Query: 164 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 223
M+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 224 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
CD++FP++L+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKI 109
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 75 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGT 133
M+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG + + F +N+VG+
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 134 ISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+ P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 120
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 56 NIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAK 115
Query: 99 HEHDC 103
+
Sbjct: 116 VREEI 120
>gi|413933536|gb|AFW68087.1| TATA-binding protein2 [Zea mays]
Length = 139
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 87/109 (79%)
Query: 164 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 223
M+I P+TT L F SGK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +
Sbjct: 1 MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGS 60
Query: 224 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
CDV+FP++L+ L + H FSSYEPELFPGLIYRM +P++VLLIFV+G+I
Sbjct: 61 CDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKI 109
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 75 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGT 133
M+I P+TT L F SGK++ GAK E KLA+RK+A+I+++LG P + F +N+VG+
Sbjct: 1 MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGS 60
Query: 134 ISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
V P+ L + S +S Y P F GLI ++ P+ L F SGK+++ GAK +
Sbjct: 61 CDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREET 120
Query: 193 KLASRKFAKILKQL 206
A +L +
Sbjct: 121 YTAFENIYPVLSEF 134
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ V P+ L + S +S Y P F GLI ++ P+ L F SGK+++ GAK
Sbjct: 56 NIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 115
Query: 99 HEHDCKLASRKFAKILKQL 117
+ A +L +
Sbjct: 116 VREETYTAFENIYPVLSEF 134
>gi|258563652|ref|XP_002582571.1| TATA-box binding protein [Uncinocarpus reesii 1704]
gi|237908078|gb|EEP82479.1| TATA-box binding protein [Uncinocarpus reesii 1704]
Length = 251
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 95/149 (63%), Gaps = 17/149 (11%)
Query: 124 FFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI 183
F RN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++
Sbjct: 86 MLFSRNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVV 145
Query: 184 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
GAK+ G K+ FKI NIV +CD++F ++L+ L H FS
Sbjct: 146 TGAKNS-----------------GFNAKFTDFKIQNIVGSCDIKFSIRLEGLASRHHNFS 188
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
SYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 189 SYEPELFPGLIYRMMKPKIVLLIFVSGKI 217
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 17/153 (11%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK+
Sbjct: 91 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKN 150
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPGK 158
+ KF F +N+VG+ + + L + SR +S Y P
Sbjct: 151 SG----FNAKFTD------------FKIQNIVGSCDIKFSIRLEGLASRHHNFSSYEPEL 194
Query: 159 FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
F GLI +++ P+ L F SGK+++ GAK +
Sbjct: 195 FPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREE 227
>gi|37727185|gb|AAO34523.1| TATA-binding protein isoform 4 [Branchiostoma floridae]
Length = 136
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 87/107 (81%)
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 225
I +PRTT L F SGK++ GAK E +LA+RK+A+++++LG P K+ FKI N+V +CD
Sbjct: 1 IRDPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCD 60
Query: 226 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
V+FP++L+ L H+QFSSYEPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 61 VKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 107
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 77 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTIS 135
I +PRTT L F SGK++ GAK E +LA+RK+A+++++LG P + + F +NMVG+
Sbjct: 1 IRDPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCD 60
Query: 136 VGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKL 194
V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK +
Sbjct: 61 VKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYE 120
Query: 195 ASRKFAKILK 204
A ILK
Sbjct: 121 AFETIYPILK 130
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK
Sbjct: 54 NMVGSCDVKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAK 113
Query: 99 HEHDCKLASRKFAKILK 115
+ A ILK
Sbjct: 114 VREEIYEAFETIYPILK 130
>gi|167387403|ref|XP_001738146.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898721|gb|EDR25505.1| TATA-box-binding protein [Entamoeba dispar SAW760]
Length = 212
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 105/154 (68%), Gaps = 5/154 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HPEI+ N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+
Sbjct: 31 HPEIV-----NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQT 85
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ G + + K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L AL
Sbjct: 86 GKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDS 145
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ F YEPE+FPGL+YRM P+V LL+F G++
Sbjct: 146 YLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKV 179
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 35 VNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTR 94
Query: 99 HEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
+ K+AS+K+AKI+K++G+P F +N+VG+ V + L ++S + + +Y P
Sbjct: 95 SIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDSYLAFCQYEP 154
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GL+ ++ +P+ T L F +GK+++ GAK E LA + IL
Sbjct: 155 EVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPIL 201
>gi|116195450|ref|XP_001223537.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
gi|88180236|gb|EAQ87704.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
Length = 242
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 109/179 (60%), Gaps = 8/179 (4%)
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYN 155
GA+ E L R+ ++ P+ +N+V T+ +GC LDL I+ + R EYN
Sbjct: 10 GAERE----LRDRQPKTSWRERIKPDWPAPIIQNVVATVDLGCRLDLRLISEQARNVEYN 65
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGF 215
KFH LIM+I PRTT L F SGK++I GAK E KLA+RK A+ L++ G + F
Sbjct: 66 RRKFHALIMRIREPRTTTLVFSSGKMVITGAKSEALAKLAARKHARALQKCGFGTGFSDF 125
Query: 216 KIHNIV--CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
K+ N V TCD F ++L+ + H++ + + YEPELFPGL+Y M++P++ L+F G+I
Sbjct: 126 KVQNYVGSATCD--FLIRLERIAHMYRESAMYEPELFPGLVYTMLRPKLKCLVFSTGKI 182
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ +GC LDL I+ + R EYN KFH LIM+I PRTT L F SGK++I GAK
Sbjct: 39 NVVATVDLGCRLDLRLISEQARNVEYNRRKFHALIMRIREPRTTTLVFSSGKMVITGAKS 98
Query: 100 EHDCKLASRKFAKILKQLGHPE-IIFFFFRNMVGTISVGCPLDLNQINSRVRYSE-YNPG 157
E KLA+RK A+ L++ G F +N VG+ + + L +I R S Y P
Sbjct: 99 EALAKLAARKHARALQKCGFGTGFSDFKVQNYVGSATCDFLIRLERIAHMYRESAMYEPE 158
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
F GL+ +L P+ CL F +GK+++ GAK D + A
Sbjct: 159 LFPGLVYTMLRPKLKCLVFSTGKIVLTGAKAVEDIQEA 196
>gi|167387263|ref|XP_001738088.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898834|gb|EDR25598.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 234
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 105/154 (68%), Gaps = 5/154 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HPEI+ N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+
Sbjct: 53 HPEIV-----NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQT 107
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ G + + K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L AL
Sbjct: 108 GKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDS 167
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ F YEPE+FPGL+YRM P+V LL+F G++
Sbjct: 168 YLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKV 201
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 57 VNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTR 116
Query: 99 HEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
+ K+AS+K+AKI+K++G+P F +N+VG+ V + L ++S + + +Y P
Sbjct: 117 SIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDSYLAFCQYEP 176
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GL+ ++ +P+ T L F +GK+++ GAK E LA + IL
Sbjct: 177 EVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPIL 223
>gi|67473541|ref|XP_652533.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|296439770|sp|C4M7H7.1|TBP2_ENTHI RecName: Full=TATA-box-binding protein 2; Short=EhTBP2; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|56469391|gb|EAL47145.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 212
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HPEI+ N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+
Sbjct: 31 HPEIV-----NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQT 85
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ G + + K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L L
Sbjct: 86 GKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDS 145
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ F YEPE+FPGL+YRM P+V LL+F G++
Sbjct: 146 YLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKV 179
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 35 VNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTR 94
Query: 99 HEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
+ K+AS+K+AKI+K++G+P F +N+VG+ V + L ++S + + +Y P
Sbjct: 95 SIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQYEP 154
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GL+ ++ +P+ T L F +GK+++ GAK E LA + IL
Sbjct: 155 EVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPIL 201
>gi|183235483|ref|XP_001914239.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|3915894|sp|P52653.2|TBP1_ENTHI RecName: Full=TATA-box-binding protein 1; Short=EhTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|3201503|emb|CAA88304.1| TATA box-binding protein [Entamoeba histolytica]
gi|169800528|gb|EDS88986.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449703333|gb|EMD43805.1| transcription initiation factor tfiid, putative [Entamoeba
histolytica KU27]
Length = 234
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HPEI+ N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+
Sbjct: 53 HPEIV-----NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQT 107
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ G + + K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L L
Sbjct: 108 GKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDS 167
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ F YEPE+FPGL+YRM P+V LL+F G++
Sbjct: 168 YLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKV 201
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 57 VNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTR 116
Query: 99 HEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
+ K+AS+K+AKI+K++G+P F +N+VG+ V + L ++S + + +Y P
Sbjct: 117 SIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQYEP 176
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GL+ ++ +P+ T L F +GK+++ GAK E LA + IL
Sbjct: 177 EVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPIL 223
>gi|209877002|ref|XP_002139943.1| TATA-box-binding protein [Cryptosporidium muris RN66]
gi|209555549|gb|EEA05594.1| TATA-box-binding protein, putative [Cryptosporidium muris RN66]
Length = 211
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 105/158 (66%), Gaps = 10/158 (6%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
PEI +N++ ++ + C LDL I R +EYNP K + ++M++ PR T L F+SG
Sbjct: 32 PEI-----QNIIASVHLQCELDLRSIAISARNAEYNPKKVNAVVMRLREPRCTGLLFRSG 86
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
+++I GA++E+D + +K AKI ++ GHP +K+ F++ N++ T D +FP++L+ L +
Sbjct: 87 RMMITGARNENDARYGGKKMAKICQKSGHPRVKFSNFRMENMIATADCKFPIRLEGLAYD 146
Query: 239 HSQFSSYEPELFPGLIYRM----VKPRVVLLIFVNGRI 272
H +F +YEPELFPGL+YR + V+L+FV+G++
Sbjct: 147 HREFCNYEPELFPGLVYRYHPENSPTKAVILLFVSGKV 184
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 7/155 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ ++ + C LDL I R +EYNP K + ++M++ PR T L F+SG+++I GA++
Sbjct: 36 NIIASVHLQCELDLRSIAISARNAEYNPKKVNAVVMRLREPRCTGLLFRSGRMMITGARN 95
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E+D + +K AKI ++ GHP + F FR NM+ T P+ L + R + Y P
Sbjct: 96 ENDARYGGKKMAKICQKSGHPRVKFSNFRMENMIATADCKFPIRLEGLAYDHREFCNYEP 155
Query: 157 GKFHGLIMKI----LNPRTTCLAFQSGKLLILGAK 187
F GL+ + + L F SGK+++ G +
Sbjct: 156 ELFPGLVYRYHPENSPTKAVILLFVSGKVIVTGCR 190
>gi|66359858|ref|XP_627107.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|38491418|gb|AAR21861.1| TATA-binding protein [Cryptosporidium parvum]
gi|46228532|gb|EAK89402.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|323509817|dbj|BAJ77801.1| cgd8_2030 [Cryptosporidium parvum]
Length = 249
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 10/158 (6%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
PEI +N++ ++ + C LDL I R +EYNP K + ++M++ +P+ T L F+SG
Sbjct: 70 PEI-----QNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSG 124
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
+L+I GA+ E+D KL +K AKI ++ G P +K+ FK+ NI+ T D +FP++L+ L +
Sbjct: 125 RLMITGARLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYD 184
Query: 239 HSQFSSYEPELFPGLIYRM----VKPRVVLLIFVNGRI 272
H F +YEPELFPGL+YR + VLL+FV+G++
Sbjct: 185 HRDFCNYEPELFPGLVYRYHPDNSPTKAVLLLFVSGKV 222
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ ++ + C LDL I R +EYNP K + ++M++ +P+ T L F+SG+L+I GA+
Sbjct: 74 NIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGARL 133
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E+D KL +K AKI ++ G P++ F F N++ T P+ L + R + Y P
Sbjct: 134 ENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNYEP 193
Query: 157 GKFHGLIMKILNP-----RTTCLAFQSGKLLILGAKHEHD 191
F GL+ + +P + L F SGK+++ G K+ +
Sbjct: 194 ELFPGLVYR-YHPDNSPTKAVLLLFVSGKVIVTGCKNYQE 232
>gi|67611070|ref|XP_667132.1| TATA-binding protein [Cryptosporidium hominis TU502]
gi|54658235|gb|EAL36903.1| TATA-binding protein [Cryptosporidium hominis]
Length = 249
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 10/158 (6%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
PEI +N++ ++ + C LDL I R +EYNP K + ++M++ +P+ T L F+SG
Sbjct: 70 PEI-----QNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSG 124
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
+L+I GA+ E+D KL +K AKI ++ G P +K+ FK+ NI+ T D +FP++L+ L +
Sbjct: 125 RLMITGARLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYD 184
Query: 239 HSQFSSYEPELFPGLIYRM----VKPRVVLLIFVNGRI 272
H F +YEPELFPGL+YR + VLL+FV+G++
Sbjct: 185 HRDFCNYEPELFPGLVYRYHPDNSPTKAVLLLFVSGKV 222
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ ++ + C LDL I R +EYNP K + ++M++ +P+ T L F+SG+L+I GA+
Sbjct: 74 NIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGARL 133
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E+D KL +K AKI ++ G P++ F F N++ T P+ L + R + Y P
Sbjct: 134 ENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNYEP 193
Query: 157 GKFHGLIMKILNP-----RTTCLAFQSGKLLILGAKHEHD 191
F GL+ + +P + L F SGK+++ G K+ +
Sbjct: 194 ELFPGLVYR-YHPDNSPTKAVLLLFVSGKVIVTGCKNYQE 232
>gi|403278005|ref|XP_003930626.1| PREDICTED: TATA box-binding protein-like protein 2 [Saimiri
boliviensis boliviensis]
Length = 381
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 97/149 (65%), Gaps = 3/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNP---GKFHGLIMKILNPRTTCLAFQSGKLLI 183
+N+V T+++ C LDL +I + +EYNP G+ + P C+
Sbjct: 205 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKLCGEPWHIFSYDYQPNLPCVKPLRSFTSP 264
Query: 184 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
A E +LA+RK+A+++++LG P ++ FKI N+V +CDV+FP++L+ L H QFS
Sbjct: 265 GSANCEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFS 324
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
SYEPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 325 SYEPELFPGLIYRMVKPRIVLLIFVSGKV 353
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 5/170 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNP---GKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V T+++ C LDL +I + +EYNP G+ + P C+
Sbjct: 207 NIVSTVNLACKLDLKKIALHAKNAEYNPKLCGEPWHIFSYDYQPNLPCVKPLRSFTSPGS 266
Query: 97 AKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEY 154
A E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y
Sbjct: 267 ANCEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 326
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
P F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 327 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEICEAFENIYPILK 376
>gi|145494864|ref|XP_001433426.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400543|emb|CAK66029.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 98/148 (66%), Gaps = 4/148 (2%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T+ +G L+L I++ R +EYNP +F +IM++ NP TT L FQSGK++ GAK
Sbjct: 28 QNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLNNPSTTALIFQSGKMVCTGAK 87
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL--HHVHSQFSSY 245
E +A+RK+AKI+++LG P ++ F I NIV + D R P+KLD + Y
Sbjct: 88 SEDQSLVAARKYAKIIQKLGFPAVFKNFTIQNIVASFDFRKPIKLDEFTKDQQYRPVVQY 147
Query: 246 EPELFPGLIYRMV--KPRVVLLIFVNGR 271
EPE+FPGLI+R + + ++ LLIFV+GR
Sbjct: 148 EPEIFPGLIFRKITDQKKITLLIFVSGR 175
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ +G L+L I++ R +EYNP +F +IM++ NP TT L FQSGK++ GAK
Sbjct: 29 NVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLNNPSTTALIFQSGKMVCTGAKS 88
Query: 100 EHDCKLASRKFAKILKQLGHPEII-FFFFRNMVGTISVGCPLDLNQINSRVRYS---EYN 155
E +A+RK+AKI+++LG P + F +N+V + P+ L++ +Y +Y
Sbjct: 89 EDQSLVAARKYAKIIQKLGFPAVFKNFTIQNIVASFDFRKPIKLDEFTKDQQYRPVVQYE 148
Query: 156 PGKFHGLIMKILNP--RTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
P F GLI + + + T L F SG+ +I G K D + IL Q
Sbjct: 149 PEIFPGLIFRKITDQKKITLLIFVSGRCVITGGKKTEDLNNVFKFILPILDQF 201
>gi|1078776|pir||S52407 TATA box-binding protein - Entamoeba histolytica
Length = 233
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 110/175 (62%), Gaps = 6/175 (3%)
Query: 99 HEHDCKLA-SRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
H C+L S K I++ + HPEI+ N+V +G L+L +I + + YNP
Sbjct: 31 HAVICQLQLSHKKVLIIQTITHPEIV-----NVVSRFQLGVKLELRKIVQKAINAIYNPK 85
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
+F G IM+I +P++T L FQ+GK++ G + + K+AS+K+AKI+K++G+PI Y F +
Sbjct: 86 RFAGAIMRISSPKSTALIFQTGKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNV 145
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
NIV +CDV+F + L L F YEPE+FPGL+YRM P+V LL+F G++
Sbjct: 146 QNIVGSCDVKFQIALRTLVDSDLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKV 200
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V +G L+L +I + + YNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 56 VNVVSRFQLGVKLELRKIVQKAINAIYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTR 115
Query: 99 HEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
+ K+AS+K+AKI+K++G+P F +N+VG+ V + L ++S + + +Y P
Sbjct: 116 SIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSDLAFCQYEP 175
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
F GL+ ++ +P+ T L F +GK+++ GAK E LA + IL
Sbjct: 176 EVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPIL 222
>gi|392522653|gb|AFM78115.1| TATA box-binding protein, partial [Skeletonema costatum]
Length = 114
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ L + H FSSYEPELFPGLIYR+V+PRVVLLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPE-IIFFF 126
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G P ++ F
Sbjct: 2 RFAAVIMRLREPRATALIFASGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 64 NIVGTVDVGFPIRLEGLVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|281203489|gb|EFA77689.1| TATA-binding protein [Polysphondylium pallidum PN500]
Length = 192
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 90/132 (68%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++G LDL I R +EYNP +F +IM+I P+TT L F+S
Sbjct: 22 HPSGIVPVLQNIVSTVNMGTQLDLKTIALGARNAEYNPKRFAAVIMRIREPKTTALIFKS 81
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 238
GK++ GAK E KLA+RK+A+I+++L P ++ FKI NIV +CDV+FP+KL+ L++
Sbjct: 82 GKMVCTGAKSEEASKLAARKYARIIQKLDFPAQFTDFKIQNIVGSCDVKFPIKLEMLNNT 141
Query: 239 HSQFSSYEPELF 250
H+ F++ E++
Sbjct: 142 HNSFTNVREEIY 153
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 32 NIVSTVNMGTQLDLKTIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGAKS 91
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINS 147
E KLA+RK+A+I+++L P + F +N+VG+ V P+ L +N+
Sbjct: 92 EEASKLAARKYARIIQKLDFPAQFTDFKIQNIVGSCDVKFPIKLEMLNN 140
>gi|392522721|gb|AFM78149.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ L H FSSYEPELFPGLIYR+V+PRVVLLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPE-IIFFF 126
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G P ++ F
Sbjct: 2 RFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 64 NIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|432937597|ref|XP_004082456.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2-like [Oryzias latipes]
Length = 354
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 179 LQNIVSTVTLGCPLDLKFIARQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
K E + +LA+RK+A+++++LG ++ FKI N+V +CDV FP++L+ L H QFS Y+
Sbjct: 239 KSEEESRLAARKYARVVQKLGFSARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQFSRYQ 298
Query: 247 PELFPGLIYRMVK-PRVVLLIFVN 269
P + P+++L F++
Sbjct: 299 SHQHPTNSWTSCXFPKMLLCFFLD 322
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 181 NIVSTVTLGCPLDLKFIARQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 240
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLN 143
E + +LA+RK+A+++++LG + F +NMV + V P+ L
Sbjct: 241 EEESRLAARKYARVVQKLGFSARFLEFKIQNMVASCDVCFPIRLE 285
>gi|431904621|gb|ELK10003.1| TATA-box-binding protein [Pteropus alecto]
Length = 193
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 82/116 (70%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 66 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 125
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
K E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QF
Sbjct: 126 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQF 181
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 68 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 127
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN 143
E +LA+RK+A+++++LG P + + F +NMVG+ V P+ L
Sbjct: 128 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 172
>gi|403220982|dbj|BAM39115.1| transcription initiation factor [Theileria orientalis strain
Shintoku]
Length = 276
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 113/196 (57%), Gaps = 5/196 (2%)
Query: 82 TTCLAFQSGKLLILGAKHEHDCKLAS-RKFAKILKQLGHPEIIFFFFRNMVGTISVGCPL 140
+T F +L L ++D ++ K++ LK + +N+V ++ +G L
Sbjct: 54 STSNNFDDKDILSLELDDKNDNIISKMSKYSCFLKANYQSNMCIPMVQNIVASVHLGQEL 113
Query: 141 DLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFA 200
DL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G+K D KL +++ A
Sbjct: 114 DLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRIIITGSKTIEDTKLGAKRMA 173
Query: 201 KIL-KQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYR--- 256
K++ K+LG +K+ FKI NI+ T + P++L+ H + S+YEPE F GL+YR
Sbjct: 174 KMIRKELGADLKFNNFKIENIIATFNCNVPIRLEVFSQEHKELSNYEPEFFAGLVYRCRI 233
Query: 257 MVKPRVVLLIFVNGRI 272
VLLIFV+G +
Sbjct: 234 SESSEAVLLIFVSGNV 249
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G+K
Sbjct: 102 NIVASVHLGQELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRIIITGSKT 161
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNP 156
D KL +++ AK++++ ++ F F N++ T + P+ L + + S Y P
Sbjct: 162 IEDTKLGAKRMAKMIRKELGADLKFNNFKIENIIATFNCNVPIRLEVFSQEHKELSNYEP 221
Query: 157 GKFHGLIMK---ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GL+ + + L F SG ++I G K H+ + + IL+Q
Sbjct: 222 EFFAGLVYRCRISESSEAVLLIFVSGNVIITGCKSAHEIQYVFKTMYPILQQ 273
>gi|389748066|gb|EIM89244.1| TATA-box binding protein-like protein [Stereum hirsutum FP-91666
SS1]
Length = 249
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+ +V T+++ C LDL I R +EY P F +I+ I +P+ T L F SGK+++ AK
Sbjct: 51 QTIVVTVNLDCRLDLKTIALHARNAEYTPKCFAAIIVCIRDPKMTALIFPSGKMIVTDAK 110
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E D +LA RK+A+I+++LG K+ FKI NIV +CD++F ++L+ L ++ +
Sbjct: 111 SEDDSRLAPRKYARIVQKLGFNAKFSEFKIQNIVRSCDIKFFIRLEGLAYITGSSA---- 166
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGR 271
LFPGLIYRM+KP+VVLLIFV+ R
Sbjct: 167 -LFPGLIYRMIKPKVVLLIFVSVR 189
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
+V T+++ C LDL I R +EY P F +I+ I +P+ T L F SGK+++ AK
Sbjct: 52 TIVVTVNLDCRLDLKTIALHARNAEYTPKCFAAIIVCIRDPKMTALIFPSGKMIVTDAKS 111
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGK 158
E D +LA RK+A+I+++LG + + F +N+V + + + L + Y +
Sbjct: 112 EDDSRLAPRKYARIVQKLGFNAKFSEFKIQNIVRSCDIKFFIRLEGLA----YITGSSAL 167
Query: 159 FHGLIMKILNPRTTCLAFQSGKLLILGA 186
F GLI +++ P+ L F S + I A
Sbjct: 168 FPGLIYRMIKPKVVLLIFVSVREEIYTA 195
>gi|392522775|gb|AFM78176.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G + FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEEVGFETAPEVDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ L + HS F+SYEPELFPGLIYR+V+PRVV+LIFV+
Sbjct: 62 VQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH---PEIIFF 125
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G PE+ F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEEVGFETAPEVD-F 60
Query: 126 FFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|392522723|gb|AFM78150.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK-YQGFK 216
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G + FK
Sbjct: 2 RFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQLAGMLDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ L H FSSYEPELFPGLIYR+V+PRVVLLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G ++ F
Sbjct: 2 RFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQLAGMLDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 64 NIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|392522731|gb|AFM78154.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK +I G K H+ LA++K A IL+++G P Y FK
Sbjct: 2 RFAAVIMRLREPRATALVFASGKTVITGTKSSHNSSLATKKIAYILERIGFQPASYINFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ + H FSSYEPELFPGLIYR+V+PRV LLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVCLLIFVS 114
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR 128
+F +IM++ PR T L F SGK +I G K H+ LA++K A IL+++G + F+
Sbjct: 2 RFAAVIMRLREPRATALVFASGKTVITGTKSSHNSSLATKKIAYILERIGFQPASYINFK 61
Query: 129 --NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVCLLIFVS 114
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 64 NIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVCLLIFVS 114
>gi|392522725|gb|AFM78151.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK++I G K H+ LA++K A IL+++G P Y FK
Sbjct: 2 RFAAVIMRLREPRATALVFASGKIVITGTKSSHNSGLATKKIAYILERVGFRPSSYINFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ + H FSSYEPELFPGLIYR+ +PRVVLLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLGQPRVVLLIFVS 114
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK++I G K H+ LA++K A IL+++G I F
Sbjct: 2 RFAAVIMRLREPRATALVFASGKIVITGTKSSHNSGLATKKIAYILERVGFRPSSYINFK 61
Query: 127 FRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT+ VG P+ L + + +S Y P F GLI ++ PR L F S
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLGQPRVVLLIFVS 114
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT+ VG P+ L + + +S Y P F GLI ++ PR L F S
Sbjct: 64 NIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLGQPRVVLLIFVS 114
>gi|392522651|gb|AFM78114.1| TATA box-binding protein, partial [Chaetoceros affinis]
gi|392522765|gb|AFM78171.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522771|gb|AFM78174.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522773|gb|AFM78175.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522777|gb|AFM78177.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G + FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ L + HS F+SYEPELFPGLIYR+V+PRVV+LIFV+
Sbjct: 62 VQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH---PEIIFF 125
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G PE+ F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVD-F 60
Query: 126 FFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|126723804|gb|ABO26816.1| TATA-box binding protein, partial [Perna canaliculus]
Length = 111
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 79/111 (71%)
Query: 137 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 196
GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK E KLA+
Sbjct: 1 GCKLDLKRIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEDQAKLAA 60
Query: 197 RKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 61 RKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 111
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK E KLA+
Sbjct: 1 GCKLDLKRIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEDQAKLAA 60
Query: 108 RKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNP 156
RK+A+I+++LG + + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 61 RKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 111
>gi|392522727|gb|AFM78152.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522729|gb|AFM78153.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGKL+I G K H+ LA++K A IL+++G P Y FK
Sbjct: 2 RFAAVIMRLREPRATALVFASGKLVITGTKSSHNSSLATKKIAYILERVGFQPASYINFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ + H FSSYEPELFPGLIYR+ +PRVV LIFV+
Sbjct: 62 MQNIVGTVDVGFPIRLEGVAFGHPTFSSYEPELFPGLIYRLFEPRVVFLIFVS 114
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGKL+I G K H+ LA++K A IL+++G I F
Sbjct: 2 RFAAVIMRLREPRATALVFASGKLVITGTKSSHNSSLATKKIAYILERVGFQPASYINFK 61
Query: 127 FRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT+ VG P+ L + +S Y P F GLI ++ PR L F S
Sbjct: 62 MQNIVGTVDVGFPIRLEGVAFGHPTFSSYEPELFPGLIYRLFEPRVVFLIFVS 114
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT+ VG P+ L + +S Y P F GLI ++ PR L F S
Sbjct: 64 NIVGTVDVGFPIRLEGVAFGHPTFSSYEPELFPGLIYRLFEPRVVFLIFVS 114
>gi|392522769|gb|AFM78173.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G + FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ L + HS F+SYEPELFPGLIYR+V+PRVV+LIFV+
Sbjct: 62 VQNIVGTADVGFPIQLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH---PEIIFF 125
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G PE+ F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVD-F 60
Query: 126 FFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 61 KVQNIVGTADVGFPIQLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 64 NIVGTADVGFPIQLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|301113196|ref|XP_002998368.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262111669|gb|EEY69721.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 220
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 87/133 (65%)
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
+D+ ++ VR ++Y P F L+M+ PR T L ++SGK +++GA D KLA+ K
Sbjct: 40 VDIKKLALLVRNADYAPRGFSALVMRFQAPRATVLLYRSGKFVVIGATSVADAKLAAEKL 99
Query: 200 AKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVK 259
ILK++ P F I N+V + DV F V+L+ L H +FS+YEPELFPGLIYRM++
Sbjct: 100 VSILKKVSFPSDNSPFTIRNVVGSADVCFRVRLEGLARDHLRFSTYEPELFPGLIYRMLR 159
Query: 260 PRVVLLIFVNGRI 272
P+ LLIF++G++
Sbjct: 160 PKCTLLIFISGKL 172
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 30 GQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
Q G +VG V +D+ ++ VR ++Y P F L+M+ PR T L ++S
Sbjct: 21 AQLAEEGVAYRVVGF--VNDRVDIKKLALLVRNADYAPRGFSALVMRFQAPRATVLLYRS 78
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI-NS 147
GK +++GA D KLA+ K ILK++ P + F RN+VG+ V + L +
Sbjct: 79 GKFVVIGATSVADAKLAAEKLVSILKKVSFPSDNSPFTIRNVVGSADVCFRVRLEGLARD 138
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+R+S Y P F GLI ++L P+ T L F SGKL+I G + D + A
Sbjct: 139 HLRFSTYEPELFPGLIYRMLRPKCTLLIFISGKLVITGCESSADGERA 186
>gi|326431087|gb|EGD76657.1| TATA box binding protein [Salpingoeca sp. ATCC 50818]
Length = 166
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 129 NMVGTISVG-CPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V T + L L +I + + SEYNP ++ +IM+I P T L F +GK++I+GAK
Sbjct: 16 NIVATAHLSRTQLKLEEIAEKAKNSEYNPKRYSAIIMRIKEPSATALIFSTGKVVIMGAK 75
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E A+R+FA+ + + G + + KIHN+V D+ F + LD LH H +S+Y+P
Sbjct: 76 SEEAAHAAARQFAQNITKAGTRVSLREIKIHNVVGRVDIGFKLHLDNLHVEHPAWSTYDP 135
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGL YRM +P VVLLIF +G+I
Sbjct: 136 ESFPGLTYRMQEPDVVLLIFHSGKI 160
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 25 CLIRGGQKNRRGTNLNMVGTISVG-CPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTT 83
L R G N +N+V T + L L +I + + SEYNP ++ +IM+I P T
Sbjct: 1 MLKRAGGANSSPNIVNIVATAHLSRTQLKLEEIAEKAKNSEYNPKRYSAIIMRIKEPSAT 60
Query: 84 CLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDL 142
L F +GK++I+GAK E A+R+FA+ + + G + N+VG + +G L L
Sbjct: 61 ALIFSTGKVVIMGAKSEEAAHAAARQFAQNITKAGTRVSLREIKIHNVVGRVDIGFKLHL 120
Query: 143 NQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+ ++ +S Y+P F GL ++ P L F SGK+++ AK
Sbjct: 121 DNLHVEHPAWSTYDPESFPGLTYRMQEPDVVLLIFHSGKIVLTKAK 166
>gi|392522767|gb|AFM78172.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 216
+F + M++ PR T L F SGK+ G K H+ LAS+KFA I++++G + FK
Sbjct: 2 RFAAVTMRLREPRATALIFASGKMCATGTKSTHNASLASKKFALIIEKVGFKTAPEVDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ L + HS F+SYEPELFPGLIYR+V+PRVV+LIFV+
Sbjct: 62 VQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH---PEIIFF 125
+F + M++ PR T L F SGK+ G K H+ LAS+KFA I++++G PE+ F
Sbjct: 2 RFAAVTMRLREPRATALIFASGKMCATGTKSTHNASLASKKFALIIEKVGFKTAPEVD-F 60
Query: 126 FFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|392522733|gb|AFM78155.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK +I G K H+ LA++K A IL+++G P + FK
Sbjct: 2 RFAAVIMRLREPRATALVFASGKTVITGTKSSHNASLATKKIAYILERVGFQPESHIHFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ NIV T DV FP++L+ + H FSSYEPELFPGLIYR+V+PRV LLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVSLLIFVS 114
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPEI-IFFF 126
+F +IM++ PR T L F SGK +I G K H+ LA++K A IL+++G PE I F
Sbjct: 2 RFAAVIMRLREPRATALVFASGKTVITGTKSSHNASLATKKIAYILERVGFQPESHIHFK 61
Query: 127 FRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT+ VG P+ L + + +S Y P F GLI +++ PR + L F S
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVSLLIFVS 114
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT+ VG P+ L + + +S Y P F GLI +++ PR + L F S
Sbjct: 64 NIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVSLLIFVS 114
>gi|440294161|gb|ELP87178.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 106/155 (68%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HPEI+ N+V T + LDL +I + R +EYNP +F G IM+I +P++T L FQ+
Sbjct: 51 HPEIV-----NVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQT 105
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GK++ G + + K+A++K+AKI+K++G+ +++ F + NIV +CDV+F + L +L+
Sbjct: 106 GKIVCTGTRSIEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYD 165
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
++ YEPE+FPGL++RM +P+V LL+F G++
Sbjct: 166 SNTDMCQYEPEVFPGLVFRMTQPKVTLLVFSTGKV 200
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 107/179 (59%), Gaps = 8/179 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V T + LDL +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 55 VNVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTR 114
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYN 155
+ K+A++K+AKI+K++G+ E+ F F +N+VG+ V + L + +S +Y
Sbjct: 115 SIEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMCQYE 174
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL-----KQLGHP 209
P F GL+ ++ P+ T L F +GK+++ GAK + A K IL +++G+P
Sbjct: 175 PEVFPGLVFRMTQPKVTLLVFSTGKVVLTGAKDDESLNTAYTKIYPILLANKKEEIGNP 233
>gi|440298942|gb|ELP91557.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 106/155 (68%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HPEI+ N+V T + LDL +I + R +EYNP +F G IM+I +P++T L FQ+
Sbjct: 51 HPEIV-----NVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQT 105
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GK++ G + + K+A++K+AKI+K++G+ +++ F + NIV +CDV+F + L +L+
Sbjct: 106 GKIVCTGTRSIEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYD 165
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
++ YEPE+FPGL++RM +P+V LL+F G++
Sbjct: 166 SNTDMCQYEPEVFPGLVFRMTQPKVTLLVFSTGKV 200
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 107/179 (59%), Gaps = 8/179 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V T + LDL +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 55 VNVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTR 114
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYN 155
+ K+A++K+AKI+K++G+ E+ F F +N+VG+ V + L + +S +Y
Sbjct: 115 SIEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMCQYE 174
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL-----KQLGHP 209
P F GL+ ++ P+ T L F +GK+++ GAK + A K IL +++G+P
Sbjct: 175 PEVFPGLVFRMTQPKVTLLVFSTGKVVLTGAKDDESLNTAYTKIYPILLANKKEEIGNP 233
>gi|156083957|ref|XP_001609462.1| TATA-box binding protein [Babesia bovis T2Bo]
gi|154796713|gb|EDO05894.1| TATA-box binding protein [Babesia bovis]
Length = 277
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V ++ +G +DL +I R +EYNP KF+ LI+++ NPR T L F++G+L++ G K
Sbjct: 102 QNIVASVHLGNEIDLREIAISTRNAEYNPRKFNALILRMQNPRCTGLVFRTGRLIVTGCK 161
Query: 188 HEHDCKLASRKFAKIL-KQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+L +++ AK++ ++LG I++ FKI NI+ T + P++L+ L+ H F +YE
Sbjct: 162 TVESARLGAKRIAKMVRRELGGGIQFNDFKIENIIATFNCNVPIRLERLYEEHKLFCNYE 221
Query: 247 PELFPGLIYRMVKP---RVVLLIFVNGRI 272
PE+F GL+YR+ P VLL+FV+G +
Sbjct: 222 PEIFAGLVYRIAIPCKSEAVLLVFVSGNV 250
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 6/175 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ +G +DL +I R +EYNP KF+ LI+++ NPR T L F++G+L++ G K
Sbjct: 103 NIVASVHLGNEIDLREIAISTRNAEYNPRKFNALILRMQNPRCTGLVFRTGRLIVTGCKT 162
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNP 156
+L +++ AK++++ I F F N++ T + P+ L ++ + + Y P
Sbjct: 163 VESARLGAKRIAKMVRRELGGGIQFNDFKIENIIATFNCNVPIRLERLYEEHKLFCNYEP 222
Query: 157 GKFHGLIMKILNP---RTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
F GL+ +I P L F SG +++ G + D L R+ A IL + H
Sbjct: 223 EIFAGLVYRIAIPCKSEAVLLVFVSGNVIVTGCRSPEDIYLIYRRMAPILCEFKH 277
>gi|300120388|emb|CBK19942.2| unnamed protein product [Blastocystis hominis]
Length = 199
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 93/146 (63%), Gaps = 2/146 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T+++ ++L ++ ++R +EYNP +F +IM+I P+ T L F+SGK+++ G K
Sbjct: 26 NIVSTVNMKKEINLPEVVDKLRNTEYNPKRFDAMIMRIREPKCTALVFKSGKVVLAGTKS 85
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFK--IHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D + A R+ IL + K K IHN+V D +FP++L+ L + + ++YE
Sbjct: 86 TKDTEAAGRRVVDILSRFTGGNKSDDTKPIIHNMVAVGDFKFPIRLEGLSIEYLESTTYE 145
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELF GLIYRM P VVLLIFV+G++
Sbjct: 146 PELFSGLIYRMKNPDVVLLIFVSGKV 171
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ ++L ++ ++R +EYNP +F +IM+I P+ T L F+SGK+++ G K
Sbjct: 26 NIVSTVNMKKEINLPEVVDKLRNTEYNPKRFDAMIMRIREPKCTALVFKSGKVVLAGTKS 85
Query: 100 EHDCKLASRKFAKILKQL---GHPEIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYN 155
D + A R+ IL + + NMV P+ L ++ + + Y
Sbjct: 86 TKDTEAAGRRVVDILSRFTGGNKSDDTKPIIHNMVAVGDFKFPIRLEGLSIEYLESTTYE 145
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
P F GLI ++ NP L F SGK+++ GAK E D + A RK + ++
Sbjct: 146 PELFSGLIYRMKNPDVVLLIFVSGKVVVTGAKDESDIRQAFRKISPLI 193
>gi|348669793|gb|EGZ09615.1| hypothetical protein PHYSODRAFT_522103 [Phytophthora sojae]
Length = 216
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 86/133 (64%)
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
+++ ++ VR ++Y P F L+M+ PR T L ++SGK +++GA D KLA+ K
Sbjct: 43 VNIEKLALLVRNADYAPRSFSALVMRFQEPRATVLVYRSGKFVVIGATSVDDSKLAADKL 102
Query: 200 AKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVK 259
I K++ P F + N+V + DV F ++L+ L H +FS+YEPE+FPGLIYRM++
Sbjct: 103 VSIFKKVSFPSDCSPFTVRNVVGSSDVGFRIRLEGLARDHLRFSTYEPEMFPGLIYRMLR 162
Query: 260 PRVVLLIFVNGRI 272
P+ LLIF++G+I
Sbjct: 163 PKCTLLIFISGKI 175
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
+++ ++ VR ++Y P F L+M+ PR T L ++SGK +++GA D KLA+ K
Sbjct: 43 VNIEKLALLVRNADYAPRSFSALVMRFQEPRATVLVYRSGKFVVIGATSVDDSKLAADKL 102
Query: 111 AKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILN 168
I K++ P + F RN+VG+ VG + L + +R+S Y P F GLI ++L
Sbjct: 103 VSIFKKVSFPSDCSPFTVRNVVGSSDVGFRIRLEGLARDHLRFSTYEPEMFPGLIYRMLR 162
Query: 169 PRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P+ T L F SGK++I G + + A K +L Q
Sbjct: 163 PKCTLLIFISGKIVITGCESPAQGEKALGKIFPVLLQ 199
>gi|444728636|gb|ELW69085.1| TATA-box-binding protein [Tupaia chinensis]
Length = 313
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 73/90 (81%)
Query: 183 ILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
I+ HE +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QF
Sbjct: 195 IVPQLHEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQF 254
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
SSYEPELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 255 SSYEPELFPGLIYRMIKPRIVLLIFVSGKV 284
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 94 ILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRY 151
I+ HE +LA+RK+A+++++LG P + + F +NMVG+ V P+ L + + ++
Sbjct: 195 IVPQLHEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQF 254
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
S Y P F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 255 SSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 307
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 40 NMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK
Sbjct: 231 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 290
Query: 99 HEHDCKLASRKFAKILK 115
+ A ILK
Sbjct: 291 VRAEIYEAFENIYPILK 307
>gi|18313147|ref|NP_559814.1| transcription factor [Pyrobaculum aerophilum str. IM2]
gi|24638239|sp|Q8ZVR0.1|TBP_PYRAE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|18160658|gb|AAL63996.1| transcription initiation factor TFIID (TATA-binding) [Pyrobaculum
aerophilum str. IM2]
Length = 199
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++
Sbjct: 8 YRIENIVATVNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCT 67
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
GAK+E D K A R K+LK G + + +I NIV + ++ V L+ + + +
Sbjct: 68 GAKNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQ-AVLMLENA 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLIYRM PRVV+LIF +G+I
Sbjct: 127 MYEPEQFPGLIYRMSSPRVVILIFGSGKI 155
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+
Sbjct: 12 NIVATVNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKN 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E D K A R K+LK G PE+ +N+V + ++ +DL Q + + Y
Sbjct: 72 EEDLKNAVRALVKLLKDHGADVPFDPEV---QIQNIVASGNLHAEVDLEQAVLMLENAMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++ GAK E D A +K LK+LG
Sbjct: 129 EPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKELG 181
>gi|392522763|gb|AFM78170.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 78/112 (69%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
+F +IM++ PR T L F SGK+ + G K H+ LA+++FA I++++G FK+
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
NIV T DV FPV+L+ L + HS +SSYEPELFPGLIYR+ PRVV LIFV+
Sbjct: 62 QNIVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEI-IFFFF 127
+F +IM++ PR T L F SGK+ + G K H+ LA+++FA I++++G + F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 128 RNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+N+VGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 62 QNIVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
N+VGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 63 NIVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|392522761|gb|AFM78169.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
+F +IM++ PR T L F SGK+ + G K H+ LA+++FA I++++G FK+
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
N+V T DV FPV+L+ L + HS +SSYEPELFPGLIYR+ PRVV LIFV+
Sbjct: 62 QNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEI-IFFFF 127
+F +IM++ PR T L F SGK+ + G K H+ LA+++FA I++++G + F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 128 RNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 62 QNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NMVGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 63 NMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|145591042|ref|YP_001153044.1| transcription factor [Pyrobaculum arsenaticum DSM 13514]
gi|379004488|ref|YP_005260160.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
gi|145282810|gb|ABP50392.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
arsenaticum DSM 13514]
gi|375159941|gb|AFA39553.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
Length = 201
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL + R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+
Sbjct: 12 NIVATVNLQVELDLEMLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKMVATGAKN 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E D K A R K+LK G PE+ +N+V + ++ +DL Q + + Y
Sbjct: 72 EEDLKNAVRALVKLLKDHGADVPFDPEV---QVQNIVASGNLHAEVDLEQAVLMLENAMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ NPR L F SGK++ GAK E D A +K LK+LG
Sbjct: 129 EPEQFPGLIYRMTNPRVVILIFGSGKIVCTGAKSERDVATAVQKLYNQLKELG 181
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+++ LDL + R+ +EYNP +F GLI+++ PR + L F++GK++
Sbjct: 8 YRIENIVATVNLQVELDLEMLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKMVAT 67
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
GAK+E D K A R K+LK G + + ++ NIV + ++ V L+ + + +
Sbjct: 68 GAKNEEDLKNAVRALVKLLKDHGADVPFDPEVQVQNIVASGNLHAEVDLEQ-AVLMLENA 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLIYRM PRVV+LIF +G+I
Sbjct: 127 MYEPEQFPGLIYRMTNPRVVILIFGSGKI 155
>gi|392522755|gb|AFM78166.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLAYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVGFPIRLEGLAYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 64 NMVGTLDVGFPIRLEGLAYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|399217563|emb|CCF74450.1| unnamed protein product [Babesia microti strain RI]
Length = 283
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 97/156 (62%), Gaps = 11/156 (7%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V ++ +G +DL Q+ R +EYNP K + LI ++L P+ T L FQ+G+++I GAK
Sbjct: 101 QNIVASVYIGIDIDLRQVAISTRNAEYNPKKVNALIFRLLKPKCTSLMFQTGRIMITGAK 160
Query: 188 HEHDCKLASRKFAKILKQL--GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
D K+ +++ K+L ++ I+++ FKI NI+ T D PV+L++L + +F SY
Sbjct: 161 TIEDAKIGAKRIVKLLLKVLKSENIRFKNFKIENIIATADCCLPVRLESLARDYREFCSY 220
Query: 246 EPELFP------GLIYRMVKPR---VVLLIFVNGRI 272
EPELF GL+YR R VLL+FV+G+I
Sbjct: 221 EPELFAGEIFDSGLVYRCPPTRNTKAVLLVFVSGKI 256
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 34 RRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 93
R T N+V ++ +G +DL Q+ R +EYNP K + LI ++L P+ T L FQ+G+++
Sbjct: 96 RSPTVQNIVASVYIGIDIDLRQVAISTRNAEYNPKKVNALIFRLLKPKCTSLMFQTGRIM 155
Query: 94 ILGAKHEHDCKLASRKFAK-ILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR 150
I GAK D K+ +++ K +LK L I F F N++ T P+ L + R
Sbjct: 156 ITGAKTIEDAKIGAKRIVKLLLKVLKSENIRFKNFKIENIIATADCCLPVRLESLARDYR 215
Query: 151 -YSEYNPGKFHGLIMK---------ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFA 200
+ Y P F G I N + L F SGK++I G K +
Sbjct: 216 EFCSYEPELFAGEIFDSGLVYRCPPTRNTKAVLLVFVSGKIIITGCKSMREVHRVFTYMY 275
Query: 201 KILKQ 205
IL+Q
Sbjct: 276 PILRQ 280
>gi|410989830|ref|XP_004001158.1| PREDICTED: TATA box-binding protein-like protein 2-like [Felis
catus]
Length = 135
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 70/84 (83%)
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYEPE
Sbjct: 24 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 83
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 84 LFPGLIYRMVKPRIVLLIFVSGKV 107
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P
Sbjct: 24 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 83
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 84 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 130
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK
Sbjct: 54 NMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAK 113
Query: 99 HEHDCKLASRKFAKILK 115
+ A ILK
Sbjct: 114 ERSEIYEAFENIYPILK 130
>gi|392522747|gb|AFM78162.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHSSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVSFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHSSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ V P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVSFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|171185805|ref|YP_001794724.1| transcription factor [Pyrobaculum neutrophilum V24Sta]
gi|226703562|sp|B1Y949.1|TBP_THENV RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|170935017|gb|ACB40278.1| 2-alkenal reductase [Pyrobaculum neutrophilum V24Sta]
Length = 197
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+++G LDL ++ R+ +EYNP +F GLI+++ PR + L F++GK++
Sbjct: 8 YRIENIVATVNLGVELDLEKLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCT 67
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
GAK+E D K A R K+LK G + + +I NIV + ++ V L+ + + +
Sbjct: 68 GAKNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLFAEVDLEQ-AVLMLENA 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLIYRM PRVV+LIF +G+I
Sbjct: 127 MYEPEQFPGLIYRMSSPRVVILIFGSGKI 155
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL ++ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+
Sbjct: 12 NIVATVNLGVELDLEKLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKN 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E D K A R K+LK G PE+ +N+V + ++ +DL Q + + Y
Sbjct: 72 EEDLKNAVRALVKLLKDHGADVPFDPEV---QIQNIVASGNLFAEVDLEQAVLMLENAMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++ GAK E D A +K LK LG
Sbjct: 129 EPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKDLG 181
>gi|392522739|gb|AFM78158.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFTSYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFTSYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 64 NMVGTLDVGFPIRLEGLVYAHSTFTSYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|392522735|gb|AFM78156.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522757|gb|AFM78167.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 64 NMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|398412558|ref|XP_003857600.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
gi|339477485|gb|EGP92576.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
Length = 177
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V +++ C LDL I VR + Y P +F ++++ PR+T L F+SGK+ I+G K
Sbjct: 7 NVVAGVNLNCRLDLKHIALSVRNASYRPKRFPAVVVRQREPRSTALIFRSGKMQIVGTKS 66
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
D +LA RKFA++L++LG+ +++ F + N+V D R + L+ L + +YEPE
Sbjct: 67 VDDARLAGRKFARMLQKLGYQPRFEDFTVQNMVANVDTRMTIHLEGL-MLTPGTHNYEPE 125
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPG +RMV P V L+F +G++
Sbjct: 126 LFPGAAFRMVDPLVTFLVFHSGKV 149
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 1/168 (0%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V +++ C LDL I VR + Y P +F ++++ PR+T L F+SGK+ I+G K
Sbjct: 7 NVVAGVNLNCRLDLKHIALSVRNASYRPKRFPAVVVRQREPRSTALIFRSGKMQIVGTKS 66
Query: 100 EHDCKLASRKFAKILKQLGH-PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGK 158
D +LA RKFA++L++LG+ P F +NMV + + L + Y P
Sbjct: 67 VDDARLAGRKFARMLQKLGYQPRFEDFTVQNMVANVDTRMTIHLEGLMLTPGTHNYEPEL 126
Query: 159 FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
F G ++++P T L F SGK+++L AK+E D A KF +L Q
Sbjct: 127 FPGAAFRMVDPLVTFLVFHSGKVVLLKAKNEEDMHEAWDKFYPLLMQF 174
>gi|119872319|ref|YP_930326.1| transcription factor [Pyrobaculum islandicum DSM 4184]
gi|166227824|sp|A1RSQ1.1|TBP_PYRIL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|119673727|gb|ABL87983.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
islandicum DSM 4184]
Length = 199
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+++G LDL ++ R+ +EYNP +F GLI+++ PR + L F++GK++
Sbjct: 8 YRIENIVATVNLGVELDLEKLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCT 67
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
GAK+E D K A R K+L+ G + + ++ NIV + ++ V L+ + + +
Sbjct: 68 GAKNEEDLKNAVRALVKLLRDHGAEVPFDPEVQVQNIVASGNLHAEVDLEQ-AVLMLENA 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLIYRM PRVV+LIF +G+I
Sbjct: 127 MYEPEQFPGLIYRMSSPRVVMLIFGSGKI 155
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL ++ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+
Sbjct: 12 NIVATVNLGVELDLEKLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKN 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E D K A R K+L+ G PE+ +N+V + ++ +DL Q + + Y
Sbjct: 72 EEDLKNAVRALVKLLRDHGAEVPFDPEV---QVQNIVASGNLHAEVDLEQAVLMLENAMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++ GAK E D A +K LK LG
Sbjct: 129 EPEQFPGLIYRMSSPRVVMLIFGSGKIVCTGAKSERDVATAVQKLYNQLKDLG 181
>gi|352681411|ref|YP_004891935.1| Box A binding protein [Thermoproteus tenax Kra 1]
gi|269990956|emb|CAP46909.1| TATA-box binding protein [Thermoproteus tenax Kra 1]
gi|350274210|emb|CCC80855.1| TATA-box binding protein (Box A binding protein) (TBP)
[Thermoproteus tenax Kra 1]
Length = 203
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+
Sbjct: 15 NIVATVNLGVELDLEQLAERLPVAEYNPDQFPGLILRLTRPRISALIFRTGKMVCTGAKN 74
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E D K A K+L G +PE+ +N+V + S+ +DL Q + + Y
Sbjct: 75 ETDLKNAVHALVKLLNDNGADVPLNPEV---QVQNIVASGSLNAEVDLEQAALLLDNAMY 131
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ PR L F SGK++ GAK E D +A ++ LK+LG
Sbjct: 132 EPEQFPGLIYRMTEPRVVVLIFGSGKIVCTGAKSEKDVAVAVQRLYDRLKELG 184
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 89/147 (60%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++ GA
Sbjct: 13 IENIVATVNLGVELDLEQLAERLPVAEYNPDQFPGLILRLTRPRISALIFRTGKMVCTGA 72
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K+E D K A K+L G + ++ NIV + + V L+ + + Y
Sbjct: 73 KNETDLKNAVHALVKLLNDNGADVPLNPEVQVQNIVASGSLNAEVDLEQAALLLDN-AMY 131
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLIYRM +PRVV+LIF +G+I
Sbjct: 132 EPEQFPGLIYRMTEPRVVVLIFGSGKI 158
>gi|392522759|gb|AFM78168.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
+F +IM++ PR L F SGK+ + G K H+ LA+++FA I++++G FK+
Sbjct: 2 RFAAVIMRLREPRAAALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
N+V T DV FPV+L+ L + HS +SSYEPELFPGLIYR+ PRVV LIFV+
Sbjct: 62 QNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEI-IFFFF 127
+F +IM++ PR L F SGK+ + G K H+ LA+++FA I++++G + F
Sbjct: 2 RFAAVIMRLREPRAAALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 128 RNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 62 QNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NMVGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 63 NMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|351694348|gb|EHA97266.1| TATA box-binding protein-like protein 2 [Heterocephalus glaber]
Length = 354
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 80/116 (68%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 210 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 269
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
K E +LA+RK+A+++++LG P K+ FKI N+V +CDVRF ++L+ L H QF
Sbjct: 270 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQF 325
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 212 NIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 271
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISV 136
E +LA+RK+A+++++LG P + + F +NMVG+ V
Sbjct: 272 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDV 309
>gi|392522741|gb|AFM78159.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLERLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVGFPIRLERLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NMVGT+ VG P+ L + + + ++ Y P F GLI ++ P+ L F S
Sbjct: 64 NMVGTLDVGFPIRLERLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|8777983|gb|AAF79168.1| TATA-box binding protein 1 [Habrotrocha constricta]
Length = 108
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 78/107 (72%)
Query: 136 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+GCPLDL +I + R +EYNP +F +IM+I NPRTT L F SGK++ GAK E D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQA 60
Query: 196 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
+R++A+++++LG P K++ FKI N+V + DV+FP++L+AL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 47 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 106
+GCPLDL +I + R +EYNP +F +IM+I NPRTT L F SGK++ GAK E D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQA 60
Query: 107 SRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI 145
+R++A+++++LG P + F +NMVG++ V P+ L +
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEAL 100
>gi|84998870|ref|XP_954156.1| transcription initiation factor (TBP ) [Theileria annulata]
gi|65305154|emb|CAI73479.1| transcription initiation factor (TBP homologue), putative
[Theileria annulata]
Length = 222
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 4/163 (2%)
Query: 114 LKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTC 173
L+QL + +N+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T
Sbjct: 33 LQQLPFNNLSIPVVQNIVASVHLGEELDLREIAISTRNAEYNPRKFNALVLRMQNPKCTG 92
Query: 174 LAFQSGKLLILGAKHEHDCKLASRKFAKIL-KQLGHPIKYQGFKIHNIVCTCDVRFPVKL 232
L F++G+++I G+K D KL ++ AK++ K+ G +K+ FKI NI+ T P++L
Sbjct: 93 LIFRTGRIIITGSKTIEDAKLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRL 152
Query: 233 DALHHVHSQFSSYEPELFPGLIYR---MVKPRVVLLIFVNGRI 272
+ H +YEPE F GL+YR + VLLIFV+G +
Sbjct: 153 EVFSQEHKDLCNYEPEFFAGLVYRCRINEESEAVLLIFVSGNV 195
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G+K
Sbjct: 48 NIVASVHLGEELDLREIAISTRNAEYNPRKFNALVLRMQNPKCTGLIFRTGRIIITGSKT 107
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNP 156
D KL ++ AK++++ ++ F F N++ T S P+ L + + Y P
Sbjct: 108 IEDAKLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLCNYEP 167
Query: 157 GKFHGLIMKI-LNPRTTC--LAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GL+ + +N + L F SG ++I G K + + + IL Q
Sbjct: 168 EFFAGLVYRCRINEESEAVLLIFVSGNVIITGCKSPQEIQYVFKIMYPILHQ 219
>gi|392522745|gb|AFM78161.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPMVVFLVFVS 114
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + ++ Y P F GLI ++ P L F S
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPMVVFLVFVS 114
>gi|392522743|gb|AFM78160.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHSPTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHSPTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 64 NMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|71033019|ref|XP_766151.1| transcription initiation factor TFIID [Theileria parva strain
Muguga]
gi|68353108|gb|EAN33868.1| transcription initiation factor TFIID, putative [Theileria parva]
Length = 222
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 97/163 (59%), Gaps = 4/163 (2%)
Query: 114 LKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTC 173
L+QL + +N+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T
Sbjct: 33 LQQLPFNNMNVPMVQNIVASVHLGEELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTG 92
Query: 174 LAFQSGKLLILGAKHEHDCKLASRKFAKIL-KQLGHPIKYQGFKIHNIVCTCDVRFPVKL 232
L F++G+++I G+K D +L ++ AK++ K+ G +K+ FKI NI+ T P++L
Sbjct: 93 LIFRTGRIIITGSKTIEDTRLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRL 152
Query: 233 DALHHVHSQFSSYEPELFPGLIYR---MVKPRVVLLIFVNGRI 272
+ H +YEPE F GL+YR + VLLIFV+G +
Sbjct: 153 EVFSQEHKDLCNYEPEFFAGLVYRCRINEESEAVLLIFVSGNV 195
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G+K
Sbjct: 48 NIVASVHLGEELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRIIITGSKT 107
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNP 156
D +L ++ AK++++ ++ F F N++ T S P+ L + + Y P
Sbjct: 108 IEDTRLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLCNYEP 167
Query: 157 GKFHGLIMKI-LNPRTTC--LAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
F GL+ + +N + L F SG ++I G K + + + IL Q H
Sbjct: 168 EFFAGLVYRCRINEESEAVLLIFVSGNVIITGCKSAQEIQYVFKTMYPILHQYQH 222
>gi|126459691|ref|YP_001055969.1| transcription factor [Pyrobaculum calidifontis JCM 11548]
gi|166227823|sp|A3MV36.1|TBP_PYRCJ RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|126249412|gb|ABO08503.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
calidifontis JCM 11548]
Length = 199
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 4/150 (2%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+++G LDL + R+ +EYNP +F GLI+++ PR + L F++GK++
Sbjct: 8 YRIENIVATVNLGVELDLESLAERLPMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCT 67
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLD-ALHHVHSQF 242
GAK+E D K A R K+L G + + +I NIV + ++ V L+ A+ + +
Sbjct: 68 GAKNEEDLKNAVRALVKLLNDHGAEVPFDPEVQIQNIVASGNLHAEVDLEQAVFMLEN-- 125
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ YEPE FPGLIYRM PRVV+LIF +G+I
Sbjct: 126 AMYEPEQFPGLIYRMSSPRVVILIFGSGKI 155
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL + R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+
Sbjct: 12 NIVATVNLGVELDLESLAERLPMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKN 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E D K A R K+L G PE+ +N+V + ++ +DL Q + + Y
Sbjct: 72 EEDLKNAVRALVKLLNDHGAEVPFDPEV---QIQNIVASGNLHAEVDLEQAVFMLENAMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++ GAK E D A +K LK+LG
Sbjct: 129 EPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKELG 181
>gi|327311063|ref|YP_004337960.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
gi|326947542|gb|AEA12648.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
Length = 207
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 102/173 (58%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL Q+ ++ +EYNP +F GLI+++ PR + L F++GK++ GAK+
Sbjct: 15 NIVATVNLGVELDLEQLAEKLPVAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKN 74
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E+D K A K+L G +PE+ +N+V + S+ +DL Q + + Y
Sbjct: 75 ENDLKNAVHALVKLLNDHGANVPLNPEV---QVQNIVASGSLNAEVDLEQAALLLENAMY 131
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++ GAK E D +A ++ L+++G
Sbjct: 132 EPEQFPGLIYRMTDPRVVVLIFGSGKIVCTGAKSEKDVAVAVQQLYDKLREIG 184
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++G LDL Q+ ++ +EYNP +F GLI+++ PR + L F++GK++ GA
Sbjct: 13 IENIVATVNLGVELDLEQLAEKLPVAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGA 72
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K+E+D K A K+L G + ++ NIV + + V L+ + + + Y
Sbjct: 73 KNENDLKNAVHALVKLLNDHGANVPLNPEVQVQNIVASGSLNAEVDLEQ-AALLLENAMY 131
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLIYRM PRVV+LIF +G+I
Sbjct: 132 EPEQFPGLIYRMTDPRVVVLIFGSGKI 158
>gi|428671167|gb|EKX72085.1| transcription factor TFIID or TATA-binding protein, TBP, putative
[Babesia equi]
Length = 304
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 11/212 (5%)
Query: 71 HGLIMKILNPRTTCL--AFQSGKLLILGAKHEHDCKLASRKFAK---ILKQLGHPEIIFF 125
G + ++ RT + ++ LL+ A + K KFAK ILK E
Sbjct: 67 QGYLDDVIATRTPSRGGSLENEALLLDIASASRNSKSFIEKFAKYSHILKT-SSTETSTP 125
Query: 126 FFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+N+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G
Sbjct: 126 VVQNIVASVHLGRELDLREIAISTRNAEYNPKKFNALVLRMHNPKCTGLIFRTGRIIITG 185
Query: 186 AKHEHDCKLASRKFAKILKQL--GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
++ +L +++ AKI++++ G ++ FKI NI+ T + P++L+ L H
Sbjct: 186 SRTTEAARLGAKRMAKIIRRVLGGDDFAFRNFKIENIIATFNCNVPIRLEVLSSEHEDLC 245
Query: 244 SYEPELFPGLIYRMV---KPRVVLLIFVNGRI 272
+YEPE F GL++R VLLIFV+G +
Sbjct: 246 NYEPEFFAGLVFRFSLTDTSEAVLLIFVSGNV 277
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G++
Sbjct: 129 NIVASVHLGRELDLREIAISTRNAEYNPKKFNALVLRMHNPKCTGLIFRTGRIIITGSRT 188
Query: 100 EHDCKLASRKFAKILKQ-LGHPEIIF--FFFRNMVGTISVGCPLDLNQINSR-VRYSEYN 155
+L +++ AKI+++ LG + F F N++ T + P+ L ++S Y
Sbjct: 189 TEAARLGAKRMAKIIRRVLGGDDFAFRNFKIENIIATFNCNVPIRLEVLSSEHEDLCNYE 248
Query: 156 PGKFHGLIMKILNPRTT---CLAFQSGKLLILGAK 187
P F GL+ + T+ L F SG ++I G K
Sbjct: 249 PEFFAGLVFRFSLTDTSEAVLLIFVSGNVIITGCK 283
>gi|367033977|ref|XP_003666271.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
gi|347013543|gb|AEO61026.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
Length = 242
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 93/155 (60%)
Query: 118 GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 177
PE +N+V T S+ C LDL I R EYN KFH L+M+I PRTT L F
Sbjct: 45 ARPEWPVPTIQNVVATASLECRLDLQAIAQHARNVEYNRRKFHALVMRIREPRTTTLVFA 104
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SG++++ GAK +LA+R+ A+ +++ G P + F++ N V + F V+L+ + H
Sbjct: 105 SGRMVVTGAKSAGLARLAARRHARAIQKCGFPTRLADFRVQNFVGSAACGFLVRLERISH 164
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ Q + +EPELFPGL+Y MV+P + L+F G++
Sbjct: 165 RYWQSARHEPELFPGLVYTMVRPSLKCLVFTTGKV 199
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 7/182 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T S+ C LDL I R EYN KFH L+M+I PRTT L F SG++++ GAK
Sbjct: 56 NVVATASLECRLDLQAIAQHARNVEYNRRKFHALVMRIREPRTTTLVFASGRMVVTGAKS 115
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-EYNPG 157
+LA+R+ A+ +++ G P + F +N VG+ + G + L +I+ R S + P
Sbjct: 116 AGLARLAARRHARAIQKCGFPTRLADFRVQNFVGSAACGFLVRLERISHRYWQSARHEPE 175
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL-----KQLGHPIKY 212
F GL+ ++ P CL F +GK+++ GAK D A +L +Q G P
Sbjct: 176 LFPGLVYTMVRPSLKCLVFTTGKVVLTGAKKREDVFEAFANLYPLLLEAKVEQRGAPPMP 235
Query: 213 QG 214
QG
Sbjct: 236 QG 237
>gi|392522737|gb|AFM78157.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +I ++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +I ++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 64 NMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|221057235|ref|XP_002259755.1| transcription initiation factor TFiid,TATA-binding protein
[Plasmodium knowlesi strain H]
gi|193809827|emb|CAQ40531.1| transcription initiation factor TFiid,TATA-binding protein,
putative [Plasmodium knowlesi strain H]
Length = 250
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F+SG+L++ G K
Sbjct: 76 NIIASANLSVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTGTKT 135
Query: 189 EHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ D +K KI+K + P+K +GF I NI+ + D P++L+ L H H + +YEP
Sbjct: 136 KADAIYGCKKIGKIIKLVTNEPVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCNYEP 195
Query: 248 ELFPGLIYR---MVKPRVVLLIFVNGRI 272
ELF GL+YR K + V+LIFV+G+I
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKI 223
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F+SG+L++ G K
Sbjct: 76 NIIASANLSVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTGTKT 135
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
+ D +K KI+K + + + F N++ + P+ L + + Y Y P
Sbjct: 136 KADAIYGCKKIGKIIKLVTNEPVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCNYEP 195
Query: 157 GKFHGLIMK---ILNPRTTCLAFQSGKLLILGAK 187
F GL+ + ++ L F SGK++I G K
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCK 229
>gi|8777977|gb|AAF79165.1|AF249988_1 TATA-box binding protein 1 [Philodina roseola]
Length = 108
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 79/107 (73%)
Query: 136 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+GCPLDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E+D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 196 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
+R++A+++++LG P K++ FKI N+V + DV+FP++L+AL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 47 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 106
+GCPLDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E+D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 107 SRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI 145
+R++A+++++LG P + F +NMVG++ V P+ L +
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEAL 100
>gi|123507489|ref|XP_001329427.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121912382|gb|EAY17204.1| hypothetical protein TVAG_291560 [Trichomonas vaginalis G3]
Length = 235
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + GC LDL +I S R SEYNP +F ++ P+ T LAF++GK+ I+G K
Sbjct: 56 NIVACVDYGCKLDLLKITSSTRNSEYNPIRFPAATLRNKEPKATALAFKNGKVNIVGCKS 115
Query: 189 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHV--HSQFSSY 245
A+R F ++ K +G +K + F I N+V T D +FP+ L+++ H +F++Y
Sbjct: 116 ADIALKAARCFGRLFKNIGIKDVKIKSFSIANMVATMDCKFPIHLESIASSPGHIKFATY 175
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
PE++ GLIYR+ P+ L+I+V+G+I
Sbjct: 176 NPEIYAGLIYRLASPKTTLMIYVSGKI 202
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 5/171 (2%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + GC LDL +I S R SEYNP +F ++ P+ T LAF++GK+ I+G K
Sbjct: 55 VNIVACVDYGCKLDLLKITSSTRNSEYNPIRFPAATLRNKEPKATALAFKNGKVNIVGCK 114
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSR---VRYSE 153
A+R F ++ K +G ++ F NMV T+ P+ L I S ++++
Sbjct: 115 SADIALKAARCFGRLFKNIGIKDVKIKSFSIANMVATMDCKFPIHLESIASSPGHIKFAT 174
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
YNP + GLI ++ +P+TT + + SGK++I GAK E + K AS IL+
Sbjct: 175 YNPEIYAGLIYRLASPKTTLMIYVSGKIIITGAKSEEELKAASAFIYPILR 225
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 40 NMVGTISVGCPLDLNQINSR---VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
NMV T+ P+ L I S ++++ YNP + GLI ++ +P+TT + + SGK++I G
Sbjct: 147 NMVATMDCKFPIHLESIASSPGHIKFATYNPEIYAGLIYRLASPKTTLMIYVSGKIIITG 206
Query: 97 AKHEHDCKLASRKFAKILKQLGHPE 121
AK E + K AS IL+ E
Sbjct: 207 AKSEEELKAASAFIYPILRLFASTE 231
>gi|8777987|gb|AAF79170.1| TATA-box binding protein [Brachionus plicatilis]
Length = 109
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 77/109 (70%)
Query: 136 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+GC L+L +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK E D +LA
Sbjct: 1 LGCNLELKKIALYARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSRLA 60
Query: 196 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
+RK+A+I+++LG P K+ FKI NIV + DV F ++L+ H HSQFSS
Sbjct: 61 ARKYARIIQKLGFPAKFMDFKIQNIVGSIDVGFCLRLECFHTCHSQFSS 109
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 47 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 106
+GC L+L +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK E D +LA
Sbjct: 1 LGCNLELKKIALYARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSRLA 60
Query: 107 SRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN 143
+RK+A+I+++LG P + + F +N+VG+I VG L L
Sbjct: 61 ARKYARIIQKLGFPAKFMDFKIQNIVGSIDVGFCLRLE 98
>gi|392522753|gb|AFM78165.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDETDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + H F+SYEPELFPGLIYR+ +P+ V L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHFTFASYEPELFPGLIYRLYEPKAVFLVFVS 114
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDETDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHFTFASYEPELFPGLIYRLYEPKAVFLVFVS 114
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 8 LKYGIGSACIGGGQA-----------CFCLIRGGQKNRRGTNL---NMVGTISVGCPLDL 53
L + G C+ G ++ + + + G K + T+ NMVGT+ VG P+ L
Sbjct: 18 LIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDETDFKVQNMVGTLDVGFPIRL 77
Query: 54 N-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
+ + ++ Y P F GLI ++ P+ L F S
Sbjct: 78 EGLVYAHFTFASYEPELFPGLIYRLYEPKAVFLVFVS 114
>gi|294939318|ref|XP_002782410.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894016|gb|EER14205.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 273
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 107/174 (61%), Gaps = 21/174 (12%)
Query: 120 PEIIFFFFRNMVGTISVGCP-------------------LDLNQINSRVRYSEYNPGKFH 160
PE ++ N++ ++ +G +DL ++ + R +EYNP K +
Sbjct: 73 PETVYPVLENVIASVELGIINSTHSTTTTGGSSSSSSHLIDLKKVAFKARNAEYNPRKVN 132
Query: 161 GLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKI-LKQLGHP-IKYQGFKIH 218
++++ +P+ T + + +GK+++ G+ E K A++K AKI +K +P +++ FKI
Sbjct: 133 AVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKVAKIVIKSGAYPQARFRRFKIE 192
Query: 219 NIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
N+V + DVRFP++L+AL + H + SYEPEL+PGL++R+ +P+V LLIFV+G+I
Sbjct: 193 NMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRLFEPKVALLIFVSGKI 246
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 10/167 (5%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
+DL ++ + R +EYNP K + ++++ +P+ T + + +GK+++ G+ E K A++K
Sbjct: 112 IDLKKVAFKARNAEYNPRKVNAVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKV 171
Query: 111 AKI-LKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKI 166
AKI +K +P+ F F NMV + V P+ L + R Y Y P + GL+ ++
Sbjct: 172 AKIVIKSGAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRL 231
Query: 167 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ 213
P+ L F SGK++ GAK+ D A R +L +KYQ
Sbjct: 232 FEPKVALLIFVSGKIVFTGAKNRDDITNAFRNIYPLL------LKYQ 272
>gi|281344600|gb|EFB20184.1| hypothetical protein PANDA_019435 [Ailuropoda melanoleuca]
Length = 89
Score = 116 bits (291), Expect = 8e-24, Method: Composition-based stats.
Identities = 50/84 (59%), Positives = 69/84 (82%)
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF ++L+ L H QFSSYEPE
Sbjct: 2 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAIRLEGLVLTHQQFSSYEPE 61
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
LFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 62 LFPGLIYRMVKPRIVLLIFVSGKV 85
Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQ-INSRVRYSEYNPG 157
E +LA+RK+A+++++LG P + F +NMVG+ V + L + + ++S Y P
Sbjct: 2 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAIRLEGLVLTHQQFSSYEPE 61
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILG 185
F GLI +++ PR L F SGK+++ G
Sbjct: 62 LFPGLIYRMVKPRIVLLIFVSGKVVLTG 89
Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 40 NMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
NMVG+ V + L + + ++S Y P F GLI +++ PR L F SGK+++ G
Sbjct: 32 NMVGSCDVRFAIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 89
>gi|392522749|gb|AFM78163.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +I ++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFATVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDGIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +I ++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + I F
Sbjct: 2 RFATVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDGIDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
+NMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 8 LKYGIGSACIGGGQA-----------CFCLIRGGQKNRRGTNL---NMVGTISVGCPLDL 53
L + G C+ G ++ + + + G K + G + NMVGT+ VG P+ L
Sbjct: 18 LIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDGIDFKVQNMVGTLDVGFPIRL 77
Query: 54 NQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
+ + ++ Y P F GLI ++ P+ L F S
Sbjct: 78 EGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|294939316|ref|XP_002782409.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894015|gb|EER14204.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 302
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 107/174 (61%), Gaps = 21/174 (12%)
Query: 120 PEIIFFFFRNMVGTISVGCP-------------------LDLNQINSRVRYSEYNPGKFH 160
PE ++ N++ ++ +G +DL ++ + R +EYNP K +
Sbjct: 102 PETVYPVLENVIASVELGIINSTHSTTTTGGSSSSSSHLIDLKKVAFKARNAEYNPRKVN 161
Query: 161 GLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKI-LKQLGHP-IKYQGFKIH 218
++++ +P+ T + + +GK+++ G+ E K A++K AKI +K +P +++ FKI
Sbjct: 162 AVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKVAKIVIKSGAYPQARFRRFKIE 221
Query: 219 NIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
N+V + DVRFP++L+AL + H + SYEPEL+PGL++R+ +P+V LLIFV+G+I
Sbjct: 222 NMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRLFEPKVALLIFVSGKI 275
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
+DL ++ + R +EYNP K + ++++ +P+ T + + +GK+++ G+ E K A++K
Sbjct: 141 IDLKKVAFKARNAEYNPRKVNAVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKV 200
Query: 111 AKI-LKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKI 166
AKI +K +P+ F F NMV + V P+ L + R Y Y P + GL+ ++
Sbjct: 201 AKIVIKSGAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRL 260
Query: 167 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQG 214
P+ L F SGK++ GAK+ D A R +L +KYQ
Sbjct: 261 FEPKVALLIFVSGKIVFTGAKNRDDITNAFRNIYPLL------LKYQN 302
>gi|328794393|ref|XP_001123347.2| PREDICTED: TATA-box-binding protein-like, partial [Apis mellifera]
Length = 169
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E+I +N+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK
Sbjct: 62 EVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGK 121
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 225
++ GA+ E D LA+RKFA+I+++LG K+ FKI NIV TCD
Sbjct: 122 IVCTGARSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCD 166
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK++ GA+
Sbjct: 70 NVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGARS 129
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFF-FRNMVGT 133
E D LA+RKFA+I+++LG + F +N+V T
Sbjct: 130 EEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVAT 164
>gi|348523966|ref|XP_003449494.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N++ T+ +GC LDL I R+ EY P F G+I +I P T FQSGK++ LG K
Sbjct: 125 NVISTVDLGCSLDLKFIARRMWNVEYKPQTFTGIIARIREPEATVTIFQSGKIISLGTKS 184
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
+ +LA+RKFA+ L++ G P+++ FKI NIV C FPV L L VH SYEPE
Sbjct: 185 VEESRLAARKFARKLQKFGFPVRFLNFKIQNIVAFCQT-FPVDLAELQKVHRGQCSYEPE 243
Query: 249 LFPGLIYRMV 258
++ GL+ +
Sbjct: 244 MYNGLVLDQI 253
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ T+ +GC LDL I R+ EY P F G+I +I P T FQSGK++ LG K
Sbjct: 125 NVISTVDLGCSLDLKFIARRMWNVEYKPQTFTGIIARIREPEATVTIFQSGKIISLGTKS 184
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPG 157
+ +LA+RKFA+ L++ G P + F +N+V P+DL ++ R Y P
Sbjct: 185 VEESRLAARKFARKLQKFGFPVRFLNFKIQNIVAFCQTF-PVDLAELQKVHRGQCSYEPE 243
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
++GL++ + L F +G + + GAK + + +IL++
Sbjct: 244 MYNGLVLDQITGIRVSL-FSTGYINVFGAKTWAEVNEVFKTICRILRE 290
>gi|193875778|gb|ACF24525.1| TATA binding protein of TFIID [Gymnochlora stellata]
Length = 162
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
LDL ++ + + SEYNP +FH LI++ +P+ T L F+SGK++ G K E + K AS KF
Sbjct: 1 LDLKKVALKAKNSEYNPKRFHALILRSRDPKATALIFKSGKMVCTGTKTETEAKEASLKF 60
Query: 200 AKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMV 258
K++KQ G + + + N+V TCD R P+ LD + + YEPE+FPGL++R
Sbjct: 61 LKVIKQAGFTKAMLKNYSVRNVVATCDYRSPINLDPIFFGYRDQCMYEPEIFPGLLFRPN 120
Query: 259 KPRVVLLIFVNGRI 272
K ++V++ F +G+I
Sbjct: 121 KAKIVVIFFSSGKI 134
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
LDL ++ + + SEYNP +FH LI++ +P+ T L F+SGK++ G K E + K AS KF
Sbjct: 1 LDLKKVALKAKNSEYNPKRFHALILRSRDPKATALIFKSGKMVCTGTKTETEAKEASLKF 60
Query: 111 AKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQINSRVRYS-EYNPGKFHGLIMKIL 167
K++KQ G + + + RN+V T P++L+ I R Y P F GL+ +
Sbjct: 61 LKVIKQAGFTKAMLKNYSVRNVVATCDYRSPINLDPIFFGYRDQCMYEPEIFPGLLFRPN 120
Query: 168 NPRTTCLAFQSGKLLILG 185
+ + F SGK++I G
Sbjct: 121 KAKIVVIFFSSGKIVITG 138
>gi|389584271|dbj|GAB67004.1| transcription initiation factor TFiid TATA-binding protein, partial
[Plasmodium cynomolgi strain B]
Length = 246
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F+SG+L++ G K
Sbjct: 76 NIIASANLSVEIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTGTKT 135
Query: 189 EHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ D A +K KI++ + +K +GF I NI+ + D P++L+ L H H + +YEP
Sbjct: 136 KGDAIYACKKIGKIIRLVTNESVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCNYEP 195
Query: 248 ELFPGLIYR---MVKPRVVLLIFVNGRI 272
ELF GL+YR K + V+LIFV+G+I
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKI 223
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F+SG+L++ G K
Sbjct: 76 NIIASANLSVEIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTGTKT 135
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
+ D A +K KI++ + + + F N++ + P+ L + + Y Y P
Sbjct: 136 KGDAIYACKKIGKIIRLVTNESVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCNYEP 195
Query: 157 GKFHGLIMK---ILNPRTTCLAFQSGKLLILGAK 187
F GL+ + ++ L F SGK++I G K
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCK 229
>gi|167522359|ref|XP_001745517.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775866|gb|EDQ89488.1| predicted protein [Monosiga brevicollis MX1]
Length = 211
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V T ++L ++ + R EYNP +F +++ P +T L F SGKL+I+G K
Sbjct: 36 ENVVATGYFSGKVNLAEVQKKTRNIEYNPRRFAACVIRNKLPHSTGLLFSSGKLVIMGCK 95
Query: 188 HEHDCKLASRKFAKI-LKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E + A KF I +K+ + GFKIHN+V DV F + L LH HS+F +Y+
Sbjct: 96 SEEQAEQAWSKFQDIVIKRCNIAVTPTGFKIHNVVGKVDVGFKIDLHKLHMEHSKFVTYD 155
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL YRM P VVLL+F +G++
Sbjct: 156 PETFPGLTYRMQDPSVVLLVFHSGKV 181
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T ++L ++ + R EYNP +F +++ P +T L F SGKL+I+G K
Sbjct: 37 NVVATGYFSGKVNLAEVQKKTRNIEYNPRRFAACVIRNKLPHSTGLLFSSGKLVIMGCKS 96
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E + A KF I+ + + + F+ N+VG + VG +DL++++ ++ Y+P
Sbjct: 97 EEQAEQAWSKFQDIVIKRCNIAVTPTGFKIHNVVGKVDVGFKIDLHKLHMEHSKFVTYDP 156
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
F GL ++ +P L F SGK+++ AK + R+ LK+
Sbjct: 157 ETFPGLTYRMQDPSVVLLVFHSGKVVLTKAKTRLEMIEGLRRILPTLKE 205
>gi|429216623|ref|YP_007174613.1| TATA-box binding protein [Caldisphaera lagunensis DSM 15908]
gi|429133152|gb|AFZ70164.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Caldisphaera lagunensis DSM 15908]
Length = 209
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
Query: 98 KHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
K E + K ++ G P + N+V T+ + PLDLN I +R+ +YNP
Sbjct: 5 KKEDEEFFGEEKTMDEKEEFGKPTV---KIENIVATVILDTPLDLNLIETRIPDVDYNPD 61
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 216
+F GL+ ++ +P+ T L F+SGK+++ GAK A + K L G P++ + +
Sbjct: 62 QFPGLVYRLQSPKITALIFKSGKMVVTGAKSVKQLVWAVKTILKKLMIKGVPMQGKPQIQ 121
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
I NIV + ++ V L+ + S YEPE FPGLIYRM KPRVVLLIF +G++
Sbjct: 122 IQNIVASANLNVDVDLEKAAFTLPK-SMYEPEQFPGLIYRMEKPRVVLLIFSSGKM 176
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 14/173 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + PLDLN I +R+ +YNP +F GL+ ++ +P+ T L F+SGK+++ GAK
Sbjct: 33 NIVATVILDTPLDLNLIETRIPDVDYNPDQFPGLVYRLQSPKITALIFKSGKMVVTGAKS 92
Query: 100 EHDCKLASRKFAKILKQL--------GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRY 151
A + ILK+L G P+I +N+V + ++ +DL + +
Sbjct: 93 VKQLVWAVK---TILKKLMIKGVPMQGKPQI---QIQNIVASANLNVDVDLEKAAFTLPK 146
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
S Y P +F GLI ++ PR L F SGK++I GAK E + + A ILK
Sbjct: 147 SMYEPEQFPGLIYRMEKPRVVLLIFSSGKMVITGAKRESEVQDAVNGIYNILK 199
>gi|374325915|ref|YP_005084115.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
gi|356641184|gb|AET31863.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
Length = 186
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 2/140 (1%)
Query: 134 ISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 193
+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+E D K
Sbjct: 1 MNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKNEEDLK 60
Query: 194 LASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPG 252
A R K+LK G + + +I NIV + ++ V L+ + + + YEPE FPG
Sbjct: 61 NAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQ-AVLMLENAMYEPEQFPG 119
Query: 253 LIYRMVKPRVVLLIFVNGRI 272
LIYRM PRVV+LIF +G+I
Sbjct: 120 LIYRMSSPRVVILIFGSGKI 139
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 45 ISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 104
+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+E D K
Sbjct: 1 MNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKNEEDLK 60
Query: 105 LASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKF 159
A R K+LK G PE+ +N+V + ++ +DL Q + + Y P +F
Sbjct: 61 NAVRALVKLLKDHGADVPFDPEV---QIQNIVASGNLHAEVDLEQAVLMLENAMYEPEQF 117
Query: 160 HGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
GLI ++ +PR L F SGK++ GAK E D A +K LK LG
Sbjct: 118 PGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYAQLKDLG 165
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ +DL Q + + Y P +F GLI ++ +PR L F SGK++ GAK
Sbjct: 87 NIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKS 146
Query: 100 EHDCKLASRKFAKILKQLG 118
E D A +K LK LG
Sbjct: 147 EKDVATAVQKLYAQLKDLG 165
>gi|392522751|gb|AFM78164.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 216
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 217 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
+ N+V T DV FP +L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+ V+
Sbjct: 62 VQNMVGTLDVGFPNRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVSVS 114
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--PEIIFFF 126
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G + I F
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 127 FRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCL 174
+NMVGT+ VG P L + + ++ Y P F GLI ++ P+ L
Sbjct: 62 VQNMVGTLDVGFPNRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFL 110
>gi|298710178|emb|CBJ26253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 358
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 14/158 (8%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILN---PRTTCLAFQSGKLLILG 185
N+ T + C +DL + R R +EYNP +F I++++N P+ T L F++GK+++ G
Sbjct: 137 NVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTG 196
Query: 186 AKHEHDCKLASRKFAKILKQL-------GHPIKY---QGFKIHNIVCTCDVRFPVKLDAL 235
++ A + FA+IL +L H I + + ++ N+V T DV FP++L+ L
Sbjct: 197 SRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGL 256
Query: 236 HHVHSQ-FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ F +YEPELFPGLIYRM P++ LIFV+G++
Sbjct: 257 VASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKV 294
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILN---PRTTCLAFQSGKLLIL 95
+N+ T + C +DL + R R +EYNP +F I++++N P+ T L F++GK+++
Sbjct: 136 VNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVT 195
Query: 96 GAKHEHDCKLASRKFAKILKQL----GHP--EIIFFFFR-----NMVGTISVGCPLDLNQ 144
G++ A + FA+IL +L G P +I F R NMV T VG P+ L
Sbjct: 196 GSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEG 255
Query: 145 INSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKI 202
+ + + + Y P F GLI ++ +P+ L F SGK+++ GAK + +K
Sbjct: 256 LVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPT 315
Query: 203 LKQL 206
L Q
Sbjct: 316 LCQF 319
>gi|8777975|gb|AAF79164.1|AF249987_1 TATA-box binding protein 1 [Macrotrachela quadricornifera]
Length = 108
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 78/107 (72%)
Query: 136 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+GCPLDL +I + R +EYNP +F +IM I +PRTT L F SGK++ GAK E+D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 196 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
+R++A+++++LG P K++ FKI N+V + DV+FP++L+AL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 47 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 106
+GCPLDL +I + R +EYNP +F +IM I +PRTT L F SGK++ GAK E+D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 107 SRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI 145
+R++A+++++LG P + F +NMVG++ V P+ L +
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEAL 100
>gi|8777979|gb|AAF79166.1| TATA-box binding protein 2 [Macrotrachela quadricornifera]
gi|8777981|gb|AAF79167.1| TATA-box binding protein 2 [Philodina roseola]
Length = 108
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 78/107 (72%)
Query: 136 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+GCPLDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E+ A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQA 60
Query: 196 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
+R++A+++++LG P K++ FKI N+V + DV+FP++L+AL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 47 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 106
+GCPLDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E+ A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQA 60
Query: 107 SRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI 145
+R++A+++++LG P + F +NMVG++ V P+ L +
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEAL 100
>gi|327400113|ref|YP_004340952.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
gi|327315621|gb|AEA46237.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
Length = 184
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G +DLN+I V+ +EY P +F GL+++ P+ L F+SGK++ G+
Sbjct: 9 IENVVASTQIGENIDLNKIAKEVKDAEYKPKQFPGLVLRTKEPKAAALIFRSGKVVCTGS 68
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A R+ KI+ +LG P+ + K+ NIV + D+ + L+A+ + +
Sbjct: 69 KSVEDANRAVRQVVKIISELGIPVILEPEVKVQNIVASADLGVDLNLNAIAIGLGLENIE 128
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ KPRVV+LIF +G++
Sbjct: 129 YEPEQFPGLVYRLDKPRVVVLIFGSGKM 156
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G +DLN+I V+ +EY P +F GL+++ P+ L F+SGK++ G+K
Sbjct: 11 NVVASTQIGENIDLNKIAKEVKDAEYKPKQFPGLVLRTKEPKAAALIFRSGKVVCTGSKS 70
Query: 100 EHDCKLASRKFAKILKQLGHPEII--FFFFRNMVGTISVGCPLDLNQINSRVRYS--EYN 155
D A R+ KI+ +LG P I+ +N+V + +G L+LN I + EY
Sbjct: 71 VEDANRAVRQVVKIISELGIPVILEPEVKVQNIVASADLGVDLNLNAIAIGLGLENIEYE 130
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ PR L F SGK+++ G K+ D A + A+ L LG
Sbjct: 131 PEQFPGLVYRLDKPRVVVLIFGSGKMVVTGGKNPEDAVKAVERIAEELSALG 182
>gi|11497985|ref|NP_069209.1| transcription factor [Archaeoglobus fulgidus DSM 4304]
gi|6647869|sp|O29874.1|TBP_ARCFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2650259|gb|AAB90862.1| transcription initiation factor IID [Archaeoglobus fulgidus DSM
4304]
Length = 183
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 100/175 (57%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G +DLN+I+ ++ SEY P +F GL+++ P+ L F+SGK++ G+K
Sbjct: 10 NVVASTQIGENIDLNKISREIKDSEYKPKQFPGLVLRTKEPKAAALVFRSGKVVCTGSKS 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + A ++ K+LK++G PE+ +N+V + +G L+LN I +
Sbjct: 70 VEDARRAVKQIVKMLKEIGISVIDEPEV---KVQNIVASADLGVDLNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ NPR L F SGK+++ G K D + A + ++ L+ LG
Sbjct: 127 EYEPEQFPGLVYRLDNPRVVVLIFGSGKMVVTGGKSPEDARKAVERISEELRTLG 181
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G +DLN+I+ ++ SEY P +F GL+++ P+ L F+SGK++ G+
Sbjct: 8 IENVVASTQIGENIDLNKISREIKDSEYKPKQFPGLVLRTKEPKAAALVFRSGKVVCTGS 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + A ++ K+LK++G I K+ NIV + D+ + L+A+ + +
Sbjct: 68 KSVEDARRAVKQIVKMLKEIGISVIDEPEVKVQNIVASADLGVDLNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ PRVV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRLDNPRVVVLIFGSGKM 155
>gi|82596850|ref|XP_726432.1| transcription initiation factor TFIId [Plasmodium yoelii yoelii
17XNL]
gi|23481840|gb|EAA17997.1| transcription initiation factor tfiid [Plasmodium yoelii yoelii]
Length = 285
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 103/171 (60%), Gaps = 7/171 (4%)
Query: 107 SRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKI 166
K + I +L H +I N++ + ++ +DL + ++ +EYNP K + LI++I
Sbjct: 90 DNKSSNIKNKLIHKDIPLKI-HNIISSANLDTEIDLRLVAISIKSAEYNPSKINTLIIRI 148
Query: 167 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCD 225
NP+ T L F+SG++++ G K++ D +K KI+K + I+ + FKI NI+ + +
Sbjct: 149 NNPKCTALIFKSGRIMLTGTKNKTDSIKGCKKIGKIIKLVTNQNIRLKNFKIENIIASAN 208
Query: 226 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKP----RVVLLIFVNGRI 272
PV+L+ L H H ++ +YEPELF GL+YR KP + V+LIFV+G+I
Sbjct: 209 CNIPVRLEMLAHDHKEYCNYEPELFAGLVYRY-KPTSNLKSVILIFVSGKI 258
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ + ++ +DL + ++ +EYNP K + LI++I NP+ T L F+SG++++ G K+
Sbjct: 111 NIISSANLDTEIDLRLVAISIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIMLTGTKN 170
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
+ D +K KI+K + + I F N++ + + P+ L + + Y Y P
Sbjct: 171 KTDSIKGCKKIGKIIKLVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCNYEP 230
Query: 157 GKFHGLIMK---ILNPRTTCLAFQSGKLLILGAK 187
F GL+ + N ++ L F SGK++I G K
Sbjct: 231 ELFAGLVYRYKPTSNLKSVILIFVSGKIIITGCK 264
>gi|119601082|gb|EAW80676.1| TATA box binding protein like 2, isoform CRA_b [Homo sapiens]
Length = 113
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 66/79 (83%)
Query: 194 LASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGL 253
+ RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYEPELFPGL
Sbjct: 7 ITQRKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGL 66
Query: 254 IYRMVKPRVVLLIFVNGRI 272
IYRMVKPR+VLLIFV+G++
Sbjct: 67 IYRMVKPRIVLLIFVSGKV 85
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 105 LASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGL 162
+ RK+A+++++LG P + F +NMVG+ V P+ L + + ++S Y P F GL
Sbjct: 7 ITQRKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGL 66
Query: 163 IMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
I +++ PR L F SGK+++ GAK + A ILK
Sbjct: 67 IYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILK 108
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 40 NMVGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
NMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK
Sbjct: 32 NMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAK 91
Query: 99 HEHDCKLASRKFAKILK 115
+ A ILK
Sbjct: 92 ERSEIYEAFENIYPILK 108
>gi|297527104|ref|YP_003669128.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
gi|297256020|gb|ADI32229.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
Length = 196
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+ + LDLN I SRV Y P +F GLI+++ P+TT L F+SGK+++ GA
Sbjct: 17 IENIVATVIIDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTGA 76
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K A +K K+L++ G I + +I NIV + D+ + L+ ++ S Y
Sbjct: 77 KSTQQLIDAVKKIIKLLRKYGIKIVSKPRIQIQNIVASGDINAYINLERAAYLLED-SMY 135
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLI+RM +PRVVLLIF +G++
Sbjct: 136 EPEQFPGLIHRMREPRVVLLIFSSGKM 162
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + LDLN I SRV Y P +F GLI+++ P+TT L F+SGK+++ GAK
Sbjct: 19 NIVATVIIDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTGAKS 78
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
A +K K+L++ G P I +N+V + + ++L + + S Y
Sbjct: 79 TQQLIDAVKKIIKLLRKYGIKIVSKPRI---QIQNIVASGDINAYINLERAAYLLEDSMY 135
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFA 200
P +F GLI ++ PR L F SGK++I GAK E + ++A R A
Sbjct: 136 EPEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEESEVEMAVRNIA 181
>gi|156094392|ref|XP_001613233.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium vivax Sal-1]
gi|148802107|gb|EDL43506.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium vivax]
Length = 250
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F++G++++ G K
Sbjct: 76 NIIASANLCVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTALIFKNGRIMLTGTKT 135
Query: 189 EHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ D +K KI+K + +K +GF I NI+ + D PV+L+ L H H ++ +YEP
Sbjct: 136 KADAIYGCKKIGKIIKLVTNESVKLEGFNIENIIASADCNMPVRLEMLAHDHKEYCNYEP 195
Query: 248 ELFPGLIYR---MVKPRVVLLIFVNGRI 272
ELF GL+YR K + V+LIFV+G+I
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKI 223
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F++G++++ G K
Sbjct: 76 NIIASANLCVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTALIFKNGRIMLTGTKT 135
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
+ D +K KI+K + + + F N++ + P+ L + + Y Y P
Sbjct: 136 KADAIYGCKKIGKIIKLVTNESVKLEGFNIENIIASADCNMPVRLEMLAHDHKEYCNYEP 195
Query: 157 GKFHGLIMK---ILNPRTTCLAFQSGKLLILGAK 187
F GL+ + ++ L F SGK++I G K
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCK 229
>gi|126466212|ref|YP_001041321.1| transcription factor [Staphylothermus marinus F1]
gi|126015035|gb|ABN70413.1| TATA binding protein of transcription factor TFIID [Staphylothermus
marinus F1]
Length = 196
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+ + LDLN I SRV Y P +F GLI+++ P+TT L F+SGK+++ GA
Sbjct: 17 IENIVATVILDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTGA 76
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K A +K K+L++ G I + +I NIV + D+ + L+ ++ S Y
Sbjct: 77 KSTQQLIDAVKKIIKLLRKYGIKIVSKPRIQIQNIVASGDINAYINLERAAYLLED-SMY 135
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLI+RM +PRVVLLIF +G++
Sbjct: 136 EPEQFPGLIHRMREPRVVLLIFSSGKM 162
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + LDLN I SRV Y P +F GLI+++ P+TT L F+SGK+++ GAK
Sbjct: 19 NIVATVILDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTGAKS 78
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
A +K K+L++ G P I +N+V + + ++L + + S Y
Sbjct: 79 TQQLIDAVKKIIKLLRKYGIKIVSKPRI---QIQNIVASGDINAYINLERAAYLLEDSMY 135
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFA 200
P +F GLI ++ PR L F SGK++I GAK E + + A R A
Sbjct: 136 EPEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEESEVETAVRNIA 181
>gi|325969184|ref|YP_004245376.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
gi|323708387|gb|ADY01874.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
Length = 193
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 95/149 (63%), Gaps = 2/149 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+++G LDL+++ R+ +EYNP +F GLI+++ P+ + L F++GK++
Sbjct: 6 YRIENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCT 65
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
GAK E++ K A ++ ++L + G + ++ NIV + ++ V ++ + + S
Sbjct: 66 GAKSENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEK-SALMLENS 124
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLIYRM P+VVLLIF +G+I
Sbjct: 125 MYEPEQFPGLIYRMDDPKVVLLIFSSGKI 153
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 102/173 (58%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL+++ R+ +EYNP +F GLI+++ P+ + L F++GK++ GAK
Sbjct: 10 NIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGH-----PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E++ K A ++ ++L + G PEI +N+V + ++ +D+ + + S Y
Sbjct: 70 ENELKRAVKELVRLLNEHGADVPLTPEI---QVQNIVASGNLHAEVDIEKSALMLENSMY 126
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +P+ L F SGK++ GAK E + A K +L+ +G
Sbjct: 127 EPEQFPGLIYRMDDPKVVLLIFSSGKIVCTGAKKEQQVRDAVFKIHDVLRDIG 179
>gi|307594950|ref|YP_003901267.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
gi|307550151|gb|ADN50216.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
Length = 193
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 95/149 (63%), Gaps = 2/149 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+++G LDL+++ R+ +EYNP +F GLI+++ P+ + L F++GK++
Sbjct: 6 YRIENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCT 65
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
GAK E++ K A ++ ++L + G + ++ NIV + ++ V ++ + + S
Sbjct: 66 GAKSENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEK-SALMLENS 124
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLIYRM P+VVLLIF +G+I
Sbjct: 125 MYEPEQFPGLIYRMDDPKVVLLIFSSGKI 153
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 102/173 (58%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL+++ R+ +EYNP +F GLI+++ P+ + L F++GK++ GAK
Sbjct: 10 NIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGH-----PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E++ K A ++ ++L + G PEI +N+V + ++ +D+ + + S Y
Sbjct: 70 ENELKRAVKELVRLLNEHGADVPLTPEI---QVQNIVASGNLHAEVDIEKSALMLENSMY 126
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +P+ L F SGK++ GAK E + A K ILK +G
Sbjct: 127 EPEQFPGLIYRMDDPKVVLLIFSSGKIVCTGAKKEQQVRDAVFKIHDILKDIG 179
>gi|288931352|ref|YP_003435412.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
gi|288893600|gb|ADC65137.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
Length = 183
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G +DLN+I ++ +EY P +F GL+++ +P+ L F+SGK++ G+K
Sbjct: 10 NVVASTQIGENIDLNKIAREIKDAEYKPKQFPGLVLRTKDPKAAALVFRSGKVVCTGSKS 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + A ++ I+K LG P++ +N+V + +G L+LN I +
Sbjct: 70 VEDARRAVKQVVNIIKSLGIEVYDDPDV---RVQNIVASADLGVDLNLNAIAVGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +PR L F SGK++I G K D K A K ++ L+ LG
Sbjct: 127 EYEPEQFPGLVYRLRDPRVVVLIFGSGKMVITGGKKPEDAKRAVEKISEELQALG 181
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 89/148 (60%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G +DLN+I ++ +EY P +F GL+++ +P+ L F+SGK++ G+
Sbjct: 8 IENVVASTQIGENIDLNKIAREIKDAEYKPKQFPGLVLRTKDPKAAALVFRSGKVVCTGS 67
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + A ++ I+K LG + ++ NIV + D+ + L+A+ + +
Sbjct: 68 KSVEDARRAVKQVVNIIKSLGIEVYDDPDVRVQNIVASADLGVDLNLNAIAVGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ PRVV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRLRDPRVVVLIFGSGKM 155
>gi|118431620|ref|NP_148219.2| transcription factor [Aeropyrum pernix K1]
gi|152031704|sp|Q9YAT1.3|TBP_AERPE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116062944|dbj|BAA80867.2| TATA-box binding protein [Aeropyrum pernix K1]
Length = 203
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 94/157 (59%), Gaps = 5/157 (3%)
Query: 117 LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAF 176
L PE+ N+V T+ + LDLN I ++++ +YNP +F GL+ ++ +PR T L F
Sbjct: 18 LPKPEV---KIENIVATVILENQLDLNLIETKIQDVDYNPDQFPGLVYRLESPRVTVLIF 74
Query: 177 QSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDAL 235
+SGK++I GAK + +K K G PI + +I NIV + +++ + L+
Sbjct: 75 KSGKMVITGAKSINQLIHVVKKLLKAFADQGIPISGKPQIQIQNIVASANLKVYIDLEK- 133
Query: 236 HHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + S YEPE FPGLIYRM +PRVV+LIF +G++
Sbjct: 134 AALEFENSLYEPEQFPGLIYRMDEPRVVMLIFSSGKM 170
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + LDLN I ++++ +YNP +F GL+ ++ +PR T L F+SGK++I GAK
Sbjct: 27 NIVATVILENQLDLNLIETKIQDVDYNPDQFPGLVYRLESPRVTVLIFKSGKMVITGAKS 86
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ +K K G P+I +N+V + ++ +DL + S Y
Sbjct: 87 INQLIHVVKKLLKAFADQGIPISGKPQI---QIQNIVASANLKVYIDLEKAALEFENSLY 143
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++ PR L F SGK++I GAK E++ A +K A+ LK+
Sbjct: 144 EPEQFPGLIYRMDEPRVVMLIFSSGKMVITGAKMENEVYDAVKKVARKLKE 194
>gi|325188734|emb|CCA23265.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 216
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 114 LKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP-GKFHGLIMKILNPRTT 172
+ +L + F N++G+ S+ LD+ + +R ++Y G F+G+I++ PR +
Sbjct: 15 IDRLAKEHGVTFRLVNLLGSGSIRGALDVKNLALMIRNADYAVRGGFNGMILRFRTPRAS 74
Query: 173 CLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKL 232
+A++SGK +++GAK L +KF IL++ G P + FKIHN CD++F +
Sbjct: 75 VIAYRSGKFIVIGAKSPAVADLVIQKFQDILQKSGAPHELVSFKIHNFCAACDLKF--RK 132
Query: 233 DALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
A +Q YEPELFPGLIYRM+ P+ +L+F++G+I
Sbjct: 133 IAYKDASAQ---YEPELFPGLIYRMLVPKCTMLVFISGKI 169
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNP-GKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
+N++G+ S+ LD+ + +R ++Y G F+G+I++ PR + +A++SGK +++GA
Sbjct: 29 VNLLGSGSIRGALDVKNLALMIRNADYAVRGGFNGMILRFRTPRASVIAYRSGKFIVIGA 88
Query: 98 KHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
K L +KF IL++ G P E++ F N C L +I + ++Y P
Sbjct: 89 KSPAVADLVIQKFQDILQKSGAPHELVSFKIHNFCA----ACDLKFRKIAYKDASAQYEP 144
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
F GLI ++L P+ T L F SGK++I G + D + A
Sbjct: 145 ELFPGLIYRMLVPKCTMLVFISGKIVITGFQKIEDGEQA 183
>gi|159041771|ref|YP_001541023.1| transcription factor [Caldivirga maquilingensis IC-167]
gi|157920606|gb|ABW02033.1| 2-alkenal reductase [Caldivirga maquilingensis IC-167]
Length = 194
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSG 179
P+ + N+V T+++G LDL ++ + +EYNP +F GLI++ P+ + L F++G
Sbjct: 2 PKEPVYRIENIVATVNLGVDLDLERLAEVLPAAEYNPDQFPGLILRFQRPKISALIFRTG 61
Query: 180 KLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHV 238
K++ GAK E + K A + K L Q G I+ ++ NIV + ++ V ++ +
Sbjct: 62 KMVCTGAKSEDELKRAVKYLVKTLNQRGAQIQNDSDIQVQNIVASGNLHAEVNIEKAALL 121
Query: 239 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
S YEPE FPGLIYRM P+VV+L+F +G+I
Sbjct: 122 LEN-SMYEPEQFPGLIYRMSDPKVVILVFSSGKI 154
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 2/170 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++G LDL ++ + +EYNP +F GLI++ P+ + L F++GK++ GAK
Sbjct: 11 NIVATVNLGVDLDLERLAEVLPAAEYNPDQFPGLILRFQRPKISALIFRTGKMVCTGAKS 70
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
E + K A + K L Q G +N+V + ++ +++ + + S Y P
Sbjct: 71 EDELKRAVKYLVKTLNQRGAQIQNDSDIQVQNIVASGNLHAEVNIEKAALLLENSMYEPE 130
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F GLI ++ +P+ L F SGK++ GAK E D +A RK LK++
Sbjct: 131 QFPGLIYRMSDPKVVILVFSSGKIVCTGAKKEADVAVAVRKLYDKLKEIN 180
>gi|8777985|gb|AAF79169.1| TATA-box binding protein 2 [Habrotrocha constricta]
Length = 108
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 74/107 (69%)
Query: 136 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
+GC LDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E D A
Sbjct: 1 LGCQLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
Query: 196 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
+R++A+++++LG P K+ FKI N+V + DV F ++L+AL H+ +
Sbjct: 61 ARRYARVIQKLGFPAKFLDFKIQNMVGSADVSFKIQLEALALKHATY 107
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 47 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 106
+GC LDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E D A
Sbjct: 1 LGCQLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
Query: 107 SRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQI 145
+R++A+++++LG P + + F +NMVG+ V + L +
Sbjct: 61 ARRYARVIQKLGFPAKFLDFKIQNMVGSADVSFKIQLEAL 100
>gi|326432016|gb|EGD77586.1| hypothetical protein PTSG_08683 [Salpingoeca sp. ATCC 50818]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 44/183 (24%)
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRV 149
G ++ G + A + + L Q G PE++ N+V T+++ LDL I V
Sbjct: 19 GAVVASGGNTGNAVSAAGGETSSALVQTGRPEVV-----NIVATVNLATHLDLKHITLSV 73
Query: 150 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
R +EY+P +F ++M+I +PRTT L F +GKL+ GAK D + +RKFAKI+K++G
Sbjct: 74 RNAEYSPKRFSAVVMRIRSPRTTALVFATGKLICTGAKSTEDAYVGARKFAKIIKKIG-- 131
Query: 210 IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
FS LFPGLI+RM PRVV+LIFV+
Sbjct: 132 --------------------------------FS-----LFPGLIFRMADPRVVVLIFVS 154
Query: 270 GRI 272
G++
Sbjct: 155 GKL 157
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 41/178 (23%)
Query: 18 GGGQACFCLIRGGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKI 77
GG+ L++ G R +N+V T+++ LDL I VR +EY+P +F ++M+I
Sbjct: 35 AGGETSSALVQTG----RPEVVNIVATVNLATHLDLKHITLSVRNAEYSPKRFSAVVMRI 90
Query: 78 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVG 137
+PRTT L F +GKL+ GAK D + +RKFAKI+K++G
Sbjct: 91 RSPRTTALVFATGKLICTGAKSTEDAYVGARKFAKIIKKIGF------------------ 132
Query: 138 CPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
F GLI ++ +PR L F SGKL+I GAK D + A
Sbjct: 133 -------------------SLFPGLIFRMADPRVVVLIFVSGKLVITGAKSHEDIEQA 171
>gi|367044928|ref|XP_003652844.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
gi|347000106|gb|AEO66508.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
Length = 224
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 92/145 (63%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V T+++ C LDL I + R EY KFH L+M+I PRTT L F SG++++ GAK
Sbjct: 49 QNVVATVNLDCRLDLTLIAQQARNVEYRRKKFHALVMRIREPRTTTLVFASGRMVVAGAK 108
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+LA+R+ A+ +++ G +++ F + N V + FP++L+ + + +++ +EP
Sbjct: 109 SAELARLAARRHARAIQKCGFRTRFRDFAVQNFVGSAACGFPIRLEGIARQYWEWARHEP 168
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E+FPGL++ + KP + L+F G++
Sbjct: 169 EIFPGLVFTVQKPSLKCLVFTTGKV 193
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R EY KFH L+M+I PRTT L F SG++++ GAK
Sbjct: 50 NVVATVNLDCRLDLTLIAQQARNVEYRRKKFHALVMRIREPRTTTLVFASGRMVVAGAKS 109
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSR-VRYSEYNPG 157
+LA+R+ A+ +++ G F +N VG+ + G P+ L I + ++ + P
Sbjct: 110 AELARLAARRHARAIQKCGFRTRFRDFAVQNFVGSAACGFPIRLEGIARQYWEWARHEPE 169
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
F GL+ + P CL F +GK+++ GAK E D A
Sbjct: 170 IFPGLVFTVQKPSLKCLVFTTGKVVLTGAKCEDDVHEA 207
>gi|14423938|sp|P58177.1|TBP_PYROC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|13752554|gb|AAK38723.1|AF367981_1 TATA-binding protein [Pyrodictium occultum]
Length = 199
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+S+ LDLN I + EYNP +F GL+ ++ +P+ T L F+SGK+++ GA
Sbjct: 23 IENIVATVSLDQTLDLNLIERSILTVEYNPEQFPGLVYRLDSPKVTALIFKSGKMVVTGA 82
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
K D A +K + LK+ H I+ G +I NIV + ++ V L+ + + S
Sbjct: 83 KSTRDLIEAVKKIVRNLKK--HGIQIYGRPKVQIQNIVASANLNVCVDLER-AALTLENS 139
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RM +PRVVLLIF +G++
Sbjct: 140 MYEPEQFPGLIHRMDEPRVVLLIFSSGKM 168
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 8/172 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+S+ LDLN I + EYNP +F GL+ ++ +P+ T L F+SGK+++ GAK
Sbjct: 25 NIVATVSLDQTLDLNLIERSILTVEYNPEQFPGLVYRLDSPKVTALIFKSGKMVVTGAKS 84
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D A +K + LK+ G P++ +N+V + ++ +DL + + S Y
Sbjct: 85 TRDLIEAVKKIVRNLKKHGIQIYGRPKV---QIQNIVASANLNVCVDLERAALTLENSMY 141
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
P +F GLI ++ PR L F SGK++I GAK E + A K + LK+L
Sbjct: 142 EPEQFPGLIHRMDEPRVVLLIFSSGKMVITGAKREEEVYEAVNKIYEKLKKL 193
>gi|195035138|ref|XP_001989048.1| GH10255 [Drosophila grimshawi]
gi|193905048|gb|EDW03915.1| GH10255 [Drosophila grimshawi]
Length = 314
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V + SV C L+L I S V Y N L M++ P TT + SG++ G
Sbjct: 28 NVVCSFSVRCHLNLQNIALKGSNVEYRREN----GMLTMRLRRPYTTASIWSSGRITCTG 83
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E K+A+R++A+IL+ LG P+++Q F++ N++ TC + +P+K+ + + +SY
Sbjct: 84 AISEMQAKVAARRYARILEHLGFPVRFQSFRVVNVLATCCMPWPIKIVNFSMHNREMASY 143
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL+PG+ YRM P+ L IF G I
Sbjct: 144 EPELYPGVTYRMRNPKATLRIFSTGNI 170
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V + SV C L+L I S V Y N L M++ P TT + SG++ G
Sbjct: 28 NVVCSFSVRCHLNLQNIALKGSNVEYRREN----GMLTMRLRRPYTTASIWSSGRITCTG 83
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E K+A+R++A+IL+ LG P + F FR N++ T + P+ + + R +
Sbjct: 84 AISEMQAKVAARRYARILEHLGFP-VRFQSFRVVNVLATCCMPWPIKIVNFSMHNREMAS 142
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P + G+ ++ NP+ T F +G + + A
Sbjct: 143 YEPELYPGVTYRMRNPKATLRIFSTGNITVTAA 175
>gi|296109497|ref|YP_003616446.1| TATA-box binding family protein [methanocaldococcus infernus ME]
gi|295434311|gb|ADG13482.1| TATA-box binding family protein [Methanocaldococcus infernus ME]
Length = 187
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + + +DL ++ + +EY P +F GL+ ++ +P+ L F+SGK+ GAK
Sbjct: 7 VNVVVSTKIADSIDLEEVALVLENAEYEPEQFPGLVCRLNDPKVALLMFRSGKVNCTGAK 66
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + + A +K K LK G +PEI +NMV T +G DLN+I V +E
Sbjct: 67 SKEEAERAIKKIIKELKDAGFDVNENPEI---KVQNMVATADLGFEPDLNEIAIYVDETE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K E D K A K + ++++
Sbjct: 124 YEPEQFPGLVYRLNDPKVVVLIFGSGKVVITGLKSEEDAKKALEKIKETIREIQE 178
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + + +DL ++ + +EY P +F GL+ ++ +P+ L F+SGK+ GAK
Sbjct: 8 NVVVSTKIADSIDLEEVALVLENAEYEPEQFPGLVCRLNDPKVALLMFRSGKVNCTGAKS 67
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ + + A +K K LK G + K+ N+V T D+ F L+ + ++ + YEP
Sbjct: 68 KEEAERAIKKIIKELKDAGFDVNENPEIKVQNMVATADLGFEPDLNEI-AIYVDETEYEP 126
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGL+YR+ P+VV+LIF +G++
Sbjct: 127 EQFPGLVYRLNDPKVVVLIFGSGKV 151
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
NMV T +G DLN+I V +EY P +F GL+ ++ +P+ L F SGK++I G K
Sbjct: 99 NMVATADLGFEPDLNEIAIYVDETEYEPEQFPGLVYRLNDPKVVVLIFGSGKVVITGLKS 158
Query: 100 EHDCKLASRKFAKILKQLGHPE 121
E D K A K + ++++ E
Sbjct: 159 EEDAKKALEKIKETIREIQEME 180
>gi|124027807|ref|YP_001013127.1| transcription factor [Hyperthermus butylicus DSM 5456]
gi|123978501|gb|ABM80782.1| TATA-box binding protein [Hyperthermus butylicus DSM 5456]
Length = 202
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 89/147 (60%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+S+ LDL I + EYNP +F GL+ ++ P+ T L F+SGK+++ GA
Sbjct: 26 IENIVATVSLDQQLDLRLIERSILTVEYNPEQFPGLVYRLDEPKVTALIFKSGKMVVTGA 85
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D A +K + LK+ G PI + +I NIV + ++ V L+ + + S Y
Sbjct: 86 KSTKDLIEAVKKIVRNLKKHGIPIYGRPKVQIQNIVASANLNVCVDLER-AALTLENSMY 144
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLI+RM +PRVVLLIF +G++
Sbjct: 145 EPEQFPGLIHRMDEPRVVLLIFSSGKM 171
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+S+ LDL I + EYNP +F GL+ ++ P+ T L F+SGK+++ GAK
Sbjct: 28 NIVATVSLDQQLDLRLIERSILTVEYNPEQFPGLVYRLDEPKVTALIFKSGKMVVTGAKS 87
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF----FFFRNMVGTISVGCPLDLNQINSRVRYSEYN 155
D A +K + LK+ G P I+ +N+V + ++ +DL + + S Y
Sbjct: 88 TKDLIEAVKKIVRNLKKHGIP--IYGRPKVQIQNIVASANLNVCVDLERAALTLENSMYE 145
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
P +F GLI ++ PR L F SGK++I GAK E + A K + LK+L
Sbjct: 146 PEQFPGLIHRMDEPRVVLLIFSSGKMVITGAKREEEVYEAVNKIYEKLKKL 196
>gi|68074137|ref|XP_678983.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium berghei strain ANKA]
gi|56499609|emb|CAH98178.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium berghei]
Length = 252
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 11/179 (6%)
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGK 158
+E+D KF+ I +L H +I N++ + ++ ++L + ++ +EYNP K
Sbjct: 53 YEND----DNKFSNIKNKLIHKDI-PLKIHNIISSANLDAEINLRLVAVSIKSAEYNPSK 107
Query: 159 FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL-GHPIKYQGFKI 217
+ LI++I NP+ T L F+SG++++ G K + D +K KI+K + I+ + FKI
Sbjct: 108 INTLIIRINNPKCTALIFKSGRIMLTGTKSKTDSIKGCKKIGKIIKIVTNQNIRLKNFKI 167
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKP----RVVLLIFVNGRI 272
NI+ + + PV+L+ L H H ++ +YEPELF GL+YR KP + V+LIFV+G+I
Sbjct: 168 ENIIASANCNIPVRLEMLAHDHKEYCNYEPELFAGLVYRY-KPASNLKSVILIFVSGKI 225
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 6/154 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ + ++ ++L + ++ +EYNP K + LI++I NP+ T L F+SG++++ G K
Sbjct: 78 NIISSANLDAEINLRLVAVSIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIMLTGTKS 137
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
+ D +K KI+K + + I F N++ + + P+ L + + Y Y P
Sbjct: 138 KTDSIKGCKKIGKIIKIVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCNYEP 197
Query: 157 GKFHGLIMK---ILNPRTTCLAFQSGKLLILGAK 187
F GL+ + N ++ L F SGK++I G K
Sbjct: 198 ELFAGLVYRYKPASNLKSVILIFVSGKIIITGCK 231
>gi|374719192|gb|AEZ67282.1| TBP, partial [Eidolon helvum]
gi|374719194|gb|AEZ67283.1| TBP, partial [Myotis daubentonii]
gi|374719196|gb|AEZ67284.1| TBP, partial [Pipistrellus sp. DR-2011]
Length = 96
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 67/94 (71%)
Query: 142 LNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 201
L I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+
Sbjct: 1 LKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYAR 60
Query: 202 ILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL 235
++++LG P K+ FKI N+V +CDV+FP++L+ L
Sbjct: 61 VVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 94
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 53 LNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 112
L I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+
Sbjct: 1 LKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYAR 60
Query: 113 ILKQLGHP-EIIFFFFRNMVGTISVGCPLDLN 143
++++LG P + + F +NMVG+ V P+ L
Sbjct: 61 VVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 92
>gi|15668684|ref|NP_247483.1| transcription factor [Methanocaldococcus jannaschii DSM 2661]
gi|2833518|sp|Q57930.1|TBP_METJA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1591210|gb|AAB98497.1| transcription initiation factor IID, TATA-box binding protein
[Methanocaldococcus jannaschii DSM 2661]
Length = 183
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 11 VNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK 70
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + ++A +K K LK G +PEI +NMV T +G +L+ I V +E
Sbjct: 71 SKEEAEIAIKKIIKELKDAGIDVIENPEI---KIQNMVATADLGIEPNLDDIALMVEGTE 127
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K E D K A +K +K++
Sbjct: 128 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQE 182
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 5/158 (3%)
Query: 116 QLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLA 175
++ PEI N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L
Sbjct: 2 KIMEPEIKIV---NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLI 58
Query: 176 FQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDA 234
F+SGK+ GAK + + ++A +K K LK G I+ KI N+V T D+ LD
Sbjct: 59 FRSGKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDD 118
Query: 235 LHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 119 I-ALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKV 155
>gi|197305019|pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp
gi|197305020|pdb|2Z8U|B Chain B, Methanococcus Jannaschii Tbp
gi|197305021|pdb|2Z8U|P Chain P, Methanococcus Jannaschii Tbp
gi|197305022|pdb|2Z8U|Q Chain Q, Methanococcus Jannaschii Tbp
Length = 188
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 16 VNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK 75
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + ++A +K K LK G +PEI +NMV T +G +L+ I V +E
Sbjct: 76 SKEEAEIAIKKIIKELKDAGIDVIENPEI---KIQNMVATADLGIEPNLDDIALMVEGTE 132
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K E D K A +K +K++
Sbjct: 133 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQE 187
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+S
Sbjct: 10 EPEIKIV---NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRS 66
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GK+ GAK + + ++A +K K LK G I+ KI N+V T D+ LD +
Sbjct: 67 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDI-A 125
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 126 LMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKV 160
>gi|145509947|ref|XP_001440912.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408140|emb|CAK73515.1| unnamed protein product [Paramecium tetraurelia]
Length = 201
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 89/148 (60%), Gaps = 9/148 (6%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+ +G L+L I++ R +EYNP +F +IM++ NP TT L FQSGK++ GA
Sbjct: 27 IQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLSNPSTTALIFQSGKMVCTGA 86
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL-HHVHSQFSSY 245
K E +A+RK+AKI+ +LG P+ + + + + + L + Y
Sbjct: 87 KSEDQSLIAARKYAKIINKLGFPV------VTLLQASTSESQSNQTNLLKDQQYRSVVQY 140
Query: 246 EPELFPGLIYRMV--KPRVVLLIFVNGR 271
EPE+FPGLI+R + + ++ LLIFV+GR
Sbjct: 141 EPEIFPGLIFRKITDQKKITLLIFVSGR 168
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ +G L+L I++ R +EYNP +F +IM++ NP TT L FQSGK++ GAK
Sbjct: 29 NVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLSNPSTTALIFQSGKMVCTGAKS 88
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKF 159
E +A+RK+AKI+ +LG P + + L Q S V +Y P F
Sbjct: 89 EDQSLIAARKYAKIINKLGFPVVTLLQASTSESQSNQTNLLKDQQYRSVV---QYEPEIF 145
Query: 160 HGLIMKILNP--RTTCLAFQSGKLLILGAKHEHD 191
GLI + + + T L F SG+ +I G K D
Sbjct: 146 PGLIFRKITDQKKITLLIFVSGRCVITGGKKTED 179
>gi|284161184|ref|YP_003399807.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
gi|284011181|gb|ADB57134.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
Length = 184
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G +DLN+I + ++Y P +F GL+++ P+ L F+SGK++ G+K
Sbjct: 11 NVVASTQIGENIDLNKIAREIPDADYKPKQFPGLVLRTKEPKAAALIFRSGKVVCTGSKS 70
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D + ++ KI+ LG P E +N+V + +G L+LN I + EY
Sbjct: 71 VEDARRVVKQIVKIVGSLGIPVIEEPEVKVQNIVASADLGTDLNLNAIAIGLGLENVEYE 130
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ +PR L F SGK+++ G K D + A K A+ L+ LG
Sbjct: 131 PEQFPGLVYRLRDPRVVVLIFGSGKMVVTGGKTPDDARRAVEKIAEELESLG 182
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G +DLN+I + ++Y P +F GL+++ P+ L F+SGK++ G+
Sbjct: 9 IENVVASTQIGENIDLNKIAREIPDADYKPKQFPGLVLRTKEPKAAALIFRSGKVVCTGS 68
Query: 187 KHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + ++ KI+ LG P I+ K+ NIV + D+ + L+A+ + +
Sbjct: 69 KSVEDARRVVKQIVKIVGSLGIPVIEEPEVKVQNIVASADLGTDLNLNAIAIGLGLENVE 128
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ PRVV+LIF +G++
Sbjct: 129 YEPEQFPGLVYRLRDPRVVVLIFGSGKM 156
>gi|333910819|ref|YP_004484552.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
gi|333751408|gb|AEF96487.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
Length = 181
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 99/177 (55%), Gaps = 8/177 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + + +EY P +F GL+ ++ +P+ L F+SGK+ GAK
Sbjct: 8 VNVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKVNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + ++A +K K LK G +PE+ +NMV T +G +L+ I + +E
Sbjct: 68 SKEEAEVAIKKIIKELKDAGMDIIDNPEV---KVQNMVATADLGIEPNLDDIALMIEGTE 124
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPI 210
Y P +F GL+ ++ +P+ L F SGK++I G K E D ++A K + L+++ I
Sbjct: 125 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKREEDAEIALNKILETLREIEEII 181
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + +G +DL + + +EY P +F GL+ ++ +P+ L F+SGK+ GAK
Sbjct: 9 NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKVNCTGAKS 68
Query: 189 EHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ + ++A +K K LK G I K+ N+V T D+ LD + + + + YEP
Sbjct: 69 KEEAEVAIKKIIKELKDAGMDIIDNPEVKVQNMVATADLGIEPNLDDI-ALMIEGTEYEP 127
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGL+YR+ P+VV+LIF +G++
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKV 152
>gi|171691522|ref|XP_001910686.1| hypothetical protein [Podospora anserina S mat+]
gi|170945709|emb|CAP71822.1| unnamed protein product [Podospora anserina S mat+]
Length = 223
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 10/155 (6%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N V T+++ C +DLN + R R EY P +F+ +IM+I +PRTT L F +G++++ GAK
Sbjct: 32 QNFVVTVNLDCRIDLNYLAQRARNVEYRPRRFNAVIMRIRDPRTTALIFATGRMVVTGAK 91
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SSYE 246
E +LA++K L++ G K++ F + NI+ + +V F ++L+ L + + +S+
Sbjct: 92 SEALARLAAKKHTYALQKCGFTPKFRDFTVQNIIGSANVGFNIRLEGLANKYVTVGASFV 151
Query: 247 PELFPGLIYRMV-------KPRV--VLLIFVNGRI 272
PE+FPGL ++ PR LLIF G+I
Sbjct: 152 PEIFPGLSFKQYLGYRADGTPRSCPTLLIFTTGKI 186
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 15/175 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N V T+++ C +DLN + R R EY P +F+ +IM+I +PRTT L F +G++++ GAK
Sbjct: 33 NFVVTVNLDCRIDLNYLAQRARNVEYRPRRFNAVIMRIRDPRTTALIFATGRMVVTGAKS 92
Query: 100 EHDCKLASRKFAKILKQLGH-PEIIFFFFRNMVGTISVGCPLDLNQINSRVRY--SEYNP 156
E +LA++K L++ G P+ F +N++G+ +VG + L + ++ + + P
Sbjct: 93 EALARLAAKKHTYALQKCGFTPKFRDFTVQNIIGSANVGFNIRLEGLANKYVTVGASFVP 152
Query: 157 GKFHGLIMKIL-------NPRT--TCLAFQSGKLLILGAKHEHDCKLASRKFAKI 202
F GL K PR+ T L F +GK+++ GAK E D + A FA++
Sbjct: 153 EIFPGLSFKQYLGYRADGTPRSCPTLLIFTTGKIVVTGAKTEEDFRAA---FARV 204
>gi|326432022|gb|EGD77592.1| TATA-box-binding protein [Salpingoeca sp. ATCC 50818]
Length = 271
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 106/212 (50%), Gaps = 62/212 (29%)
Query: 118 GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNP-------- 169
G PEI+ N+V T+++G LDL I R ++Y P +F ++M+I +
Sbjct: 38 GLPEIV-----NVVATVNLGLTLDLKYIAMHARNAQYTPNRFSAMVMRIRDEEKQNTSHI 92
Query: 170 ----------RTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH----------- 208
+ T L F +GKL+ G K + + A++KFAKI++++ H
Sbjct: 93 ASRRRTGRPMKATALVFATGKLICTGTKGPEEARAAAKKFAKIIRKILHLERAEKAAARE 152
Query: 209 ----------------------------PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+++ GFK+ N+V CD RFP++L+AL +
Sbjct: 153 AATAMLTEHGGQRDHDDEEEEGEQEEAARVRFDGFKVQNMVAKCDCRFPIRLEALQAHYP 212
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
FS+YEPELFPGL++RM +PR V+L FV+G++
Sbjct: 213 VFSTYEPELFPGLVFRMAEPRCVVLCFVSGKL 244
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 59/225 (26%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNP------------------ 80
+N+V T+++G LDL I R ++Y P +F ++M+I +
Sbjct: 43 VNVVATVNLGLTLDLKYIAMHARNAQYTPNRFSAMVMRIRDEEKQNTSHIASRRRTGRPM 102
Query: 81 RTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH--------------------- 119
+ T L F +GKL+ G K + + A++KFAKI++++ H
Sbjct: 103 KATALVFATGKLICTGTKGPEEARAAAKKFAKIIRKILHLERAEKAAAREAATAMLTEHG 162
Query: 120 -----------------PEIIF--FFFRNMVGTISVGCPLDLNQINSRVR-YSEYNPGKF 159
+ F F +NMV P+ L + + +S Y P F
Sbjct: 163 GQRDHDDEEEEGEQEEAARVRFDGFKVQNMVAKCDCRFPIRLEALQAHYPVFSTYEPELF 222
Query: 160 HGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 204
GL+ ++ PR L F SGKL+I GAK + A +LK
Sbjct: 223 PGLVFRMAEPRCVVLCFVSGKLVITGAKSREQIQEAFDNICDMLK 267
>gi|325185920|emb|CCA20424.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 203
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 127 FRNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+N+V + ++G DL I S+ R +E P K + ++MKI +P TT + F +GKL++
Sbjct: 11 IKNVVCSANLGMRFDLTDLLIKSQKR-AELVPKK-NCILMKIPSPDTTAMLFSNGKLVVT 68
Query: 185 GAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
GA E K A+RKF +I++++ +P + FKI NI+ CDV F + ++ H+
Sbjct: 69 GANSEDQVKTAARKFTQIIQKMDYPGVNLIDFKIRNIIGNCDVGFRILMEKFAAAHASRC 128
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPEL+P LIYR+ P V +L+FV+G++
Sbjct: 129 IYEPELYPALIYRLAHPSVKILVFVSGKV 157
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 40 NMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
N+V + ++G DL I S+ R +E P K + ++MKI +P TT + F +GKL++ GA
Sbjct: 13 NVVCSANLGMRFDLTDLLIKSQKR-AELVPKK-NCILMKIPSPDTTAMLFSNGKLVVTGA 70
Query: 98 KHEHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQI-NSRVRYSEY 154
E K A+RKF +I++++ +P +I F RN++G VG + + + + Y
Sbjct: 71 NSEDQVKTAARKFTQIIQKMDYPGVNLIDFKIRNIIGNCDVGFRILMEKFAAAHASRCIY 130
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
P + LI ++ +P L F SGK++ G+K D A + +L Q
Sbjct: 131 EPELYPALIYRLAHPSVKILVFVSGKVVFTGSKDPRDLHAACEQIYPLLVQF 182
>gi|289193261|ref|YP_003459202.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
gi|288939711|gb|ADC70466.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
Length = 180
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 8 VNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + ++A +K K LK+ G +P+I +NMV T +G +L+ I V +E
Sbjct: 68 SKEEAEIAIKKVIKELKEAGMDVIENPDI---KIQNMVATADLGIEPNLDDIALMVEGTE 124
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K E D K A +K +K++
Sbjct: 125 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQE 179
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GK+ GAK + + ++A +K K LK+ G I+ KI N+V T D+ LD +
Sbjct: 59 GKVNCTGAKSKEEAEIAIKKVIKELKEAGMDVIENPDIKIQNMVATADLGIEPNLDDI-A 117
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 118 LMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKV 152
>gi|14423942|sp|Q9P9I9.1|TBP_METTL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor;
AltName: Full=aTBP
gi|6723836|emb|CAB66385.1| archaeal transcription factor TBP [Methanothermococcus
thermolithotrophicus]
Length = 181
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 8 VNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ D ++A +K K LK G +PE+ +NMV T +G +L+ I S + +E
Sbjct: 68 SKEDAEIAIKKIIKELKDAGMDIIDNPEV---NVQNMVATADLGIEPNLDDI-STLEGTE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K + D LA K LK+L
Sbjct: 124 YEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKKKDDAYLALDKILSTLKELEE 178
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GKL GAK + D ++A +K K LK G I + N+V T D+ LD +
Sbjct: 59 GKLNCTGAKSKEDAEIAIKKIIKELKDAGMDIIDNPEVNVQNMVATADLGIEPNLDDIST 118
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 119 LEG--TEYEPEQFPGLVYRLSDPKVVVLIFGSGKV 151
>gi|301103642|ref|XP_002900907.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
gi|262101662|gb|EEY59714.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
Length = 163
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 84/124 (67%), Gaps = 2/124 (1%)
Query: 150 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
R +E P K + ++MK+ NP+ T + F +GKL+ GA+ E K A+R+F ++++++ P
Sbjct: 14 RRAELVPKK-NCILMKLHNPKATAMLFANGKLVCTGAETEDAIKNAARRFTQVIQKMDFP 72
Query: 210 -IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFV 268
+ FKI N+V TCD+ F V ++AL HS +YEPEL+P LIYR+ KP+V +L+FV
Sbjct: 73 GVNLIDFKIQNVVGTCDMGFRVLVEALAFAHSDRCTYEPELYPALIYRLEKPQVKVLVFV 132
Query: 269 NGRI 272
+G++
Sbjct: 133 SGKV 136
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 61 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 120
R +E P K + ++MK+ NP+ T + F +GKL+ GA+ E K A+R+F ++++++ P
Sbjct: 14 RRAELVPKK-NCILMKLHNPKATAMLFANGKLVCTGAETEDAIKNAARRFTQVIQKMDFP 72
Query: 121 --EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 177
+I F +N+VGT +G + + + + Y P + LI ++ P+ L F
Sbjct: 73 GVNLIDFKIQNVVGTCDMGFRVLVEALAFAHSDRCTYEPELYPALIYRLEKPQVKVLVFV 132
Query: 178 SGKLLILGAKHEHD 191
SGK++ +K +
Sbjct: 133 SGKVVFTDSKEPRE 146
>gi|195964300|gb|ACG60161.1| TATA binding protein [Notothenia coriiceps]
Length = 171
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 75 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 134
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 221
K E +LA+RK+A+++++LG P K+ FKI N+V
Sbjct: 135 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 169
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 77 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 136
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGT 133
E +LA+RK+A+++++LG P + + F +NMVG+
Sbjct: 137 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 171
>gi|294939320|ref|XP_002782411.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894017|gb|EER14206.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 255
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 94/149 (63%), Gaps = 3/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNP-RTTCLAFQSGKLLILG 185
N++ + +G +D I +R EYNP K + +++ +P + TC +++GK++I G
Sbjct: 80 LDNVIASFELGIDIDPKTIAFNLRNCEYNPRKHNCAVIRFTSPTKATCHIYRNGKVMING 139
Query: 186 AKHEHDCKLASRKFAKILKQLGH--PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
A K +K K+++++ H IK+ FK+ N++ + DVRFP++L+ L + HS ++
Sbjct: 140 AYTIELAKKIGKKIVKLVRRITHNPSIKFINFKVENMIASVDVRFPIRLERLAYDHSAYA 199
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+YEPEL GL +R+ P++V++I+V+G+I
Sbjct: 200 TYEPELSSGLYFRLFDPKLVIMIYVSGKI 228
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 5/171 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNP-RTTCLAFQSGKLLILGAK 98
N++ + +G +D I +R EYNP K + +++ +P + TC +++GK++I GA
Sbjct: 82 NVIASFELGIDIDPKTIAFNLRNCEYNPRKHNCAVIRFTSPTKATCHIYRNGKVMINGAY 141
Query: 99 HEHDCKLASRKFAKILKQLGH-PEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEY 154
K +K K+++++ H P I F F+ NM+ ++ V P+ L ++ Y+ Y
Sbjct: 142 TIELAKKIGKKIVKLVRRITHNPSIKFINFKVENMIASVDVRFPIRLERLAYDHSAYATY 201
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P GL ++ +P+ + + SGK+ +G K D A +L Q
Sbjct: 202 EPELSSGLYFRLFDPKLVIMIYVSGKISFIGGKTLDDISKAFCSIYPLLTQ 252
>gi|256810655|ref|YP_003128024.1| transcription factor [Methanocaldococcus fervens AG86]
gi|256793855|gb|ACV24524.1| TATA-box binding family protein [Methanocaldococcus fervens AG86]
Length = 180
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 8 VNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + ++A +K K LK G +PEI +NMV T +G +L+ I V +E
Sbjct: 68 SKEEAEIAIKKIIKELKDAGIDVIENPEI---KIQNMVATADLGIEPNLDDIALMVEGTE 124
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K E D K A +K ++++
Sbjct: 125 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIREVQE 179
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GK+ GAK + + ++A +K K LK G I+ KI N+V T D+ LD +
Sbjct: 59 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDI-A 117
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 118 LMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKV 152
>gi|261403691|ref|YP_003247915.1| transcription factor [Methanocaldococcus vulcanius M7]
gi|261370684|gb|ACX73433.1| TATA-box binding family protein [Methanocaldococcus vulcanius M7]
Length = 180
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 8 VNVVVSTKIGDNIDLEEVALILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + ++A +K K LK G +PEI +NMV T +G +L+ I V +E
Sbjct: 68 SKEEAEIAIKKIIKELKDAGIEVIENPEI---KIQNMVATADLGIEPNLDDIALMVEGTE 124
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K E D K A K + +K++
Sbjct: 125 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALNKILETIKEVQE 179
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTKIGDNIDLEEVALILENAEYEPEQFPGLVCRLSVPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GK+ GAK + + ++A +K K LK G I+ KI N+V T D+ LD +
Sbjct: 59 GKVNCTGAKSKEEAEIAIKKIIKELKDAGIEVIENPEIKIQNMVATADLGIEPNLDDI-A 117
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 118 LMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKV 152
>gi|14423943|sp|Q9UWN7.1|TBP_SULAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|6578935|gb|AAF18138.1|AF205428_1 TATA-box binding protein [Sulfolobus acidocaldarius]
Length = 197
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GA
Sbjct: 14 IENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGA 73
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K + A ++ K LK+ G + + +I NIV + ++ V LD + + Y
Sbjct: 74 KSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMY 132
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLIYRM +PRVVLLIF +G++
Sbjct: 133 EPEQFPGLIYRMDEPRVVLLIFSSGKM 159
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK
Sbjct: 16 NIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKS 75
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ A ++ K LK+ G P+I +N+V + ++ ++L++ + + Y
Sbjct: 76 TDELIKAVKRIIKTLKKYGMQLTGKPKI---QIQNIVASANLHVIVNLDKAAFLLENNMY 132
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ PR L F SGK++I GAK E + A +K L +L
Sbjct: 133 EPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELD 185
>gi|195964302|gb|ACG60162.1| TATA binding protein [Chionodraco rastrospinosus]
Length = 173
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 77 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCAGA 136
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 221
K E +LA+RK+A+++++LG P K+ FKI N+V
Sbjct: 137 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 171
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 79 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCAGAKS 138
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGT 133
E +LA+RK+A+++++LG P + + F +NMVG+
Sbjct: 139 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 173
>gi|38492428|pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|38492429|pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|1419209|emb|CAA64405.1| box A binding protein (BAP) [Sulfolobus acidocaldarius]
Length = 198
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GA
Sbjct: 15 IENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGA 74
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K + A ++ K LK+ G + + +I NIV + ++ V LD + + Y
Sbjct: 75 KSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMY 133
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLIYRM +PRVVLLIF +G++
Sbjct: 134 EPEQFPGLIYRMDEPRVVLLIFSSGKM 160
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK
Sbjct: 17 NIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKS 76
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ A ++ K LK+ G P+I +N+V + ++ ++L++ + + Y
Sbjct: 77 TDELIKAVKRIIKTLKKYGMQLTGKPKI---QIQNIVASANLHVIVNLDKAAFLLENNMY 133
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ PR L F SGK++I GAK E + A +K L +L
Sbjct: 134 EPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELD 186
>gi|14424468|sp|Q55031.2|TBP_SULSH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GA
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGA 73
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
K + A ++ K LK+ G IK G +I NIV + ++ V LD + +
Sbjct: 74 KSTEELIKAVKRIIKTLKKYG--IKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-N 130
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RM PRVVLLIF +G++
Sbjct: 131 MYEPEQFPGLIFRMDDPRVVLLIFSSGKM 159
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 16 NIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKS 75
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ A ++ K LK+ +G P+I +N+V + ++ ++L++ + + Y
Sbjct: 76 TEELIKAVKRIIKTLKKYGIKIMGKPKI---QIQNIVASANLHVNVNLDKAAFLLENNMY 132
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++I GAK E + A ++ L +L
Sbjct: 133 EPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAELD 185
>gi|347523992|ref|YP_004781562.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
gi|343460874|gb|AEM39310.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
Length = 207
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 8/161 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL I + + EYNP +F GL+ ++ P+ T L F+SGK+++ GAK
Sbjct: 30 NIVATVTLDQNLDLYAIETSIPNVEYNPEQFPGLVFRLEEPKVTALIFKSGKMVVTGAKS 89
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
A +K + LK+ +G P++ +N+V + ++ +DL + + S Y
Sbjct: 90 TQQLIEAVKKIIRELKRHGIVIVGRPKV---QIQNIVASANLNVCVDLEKAALTLENSMY 146
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
P +F GLI ++ NPR L F SGK++I GAK E + K A
Sbjct: 147 EPEQFPGLIYRMQNPRVVLLIFSSGKMVITGAKREEEVKEA 187
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 10/153 (6%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+++ LDL I + + EYNP +F GL+ ++ P+ T L F+SGK+++
Sbjct: 26 YRIENIVATVTLDQNLDLYAIETSIPNVEYNPEQFPGLVFRLEEPKVTALIFKSGKMVVT 85
Query: 185 GAKHEHDCKLASRKFAKILKQ-----LGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
GAK A +K + LK+ +G P +I NIV + ++ V L+ +
Sbjct: 86 GAKSTQQLIEAVKKIIRELKRHGIVIVGRP----KVQIQNIVASANLNVCVDLEK-AALT 140
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ S YEPE FPGLIYRM PRVVLLIF +G++
Sbjct: 141 LENSMYEPEQFPGLIYRMQNPRVVLLIFSSGKM 173
>gi|886020|gb|AAC43403.1| TATA-binding protein homolog; Method: conceptual translation
supplied by author, partial [Sulfolobus shibatae]
Length = 198
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GA
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGA 73
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
K + A ++ K LK+ G IK G +I NIV + ++ V LD + +
Sbjct: 74 KSTEELIKAVKRIIKTLKKYG--IKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-N 130
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RM PRVVLLIF +G++
Sbjct: 131 MYEPEQFPGLIFRMDDPRVVLLIFSSGKM 159
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 16 NIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKS 75
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ A ++ K LK+ +G P+I +N+V + ++ ++L++ + + Y
Sbjct: 76 TEELIKAVKRIIKTLKKYGIKIMGKPKI---QIQNIVASANLHVNVNLDKAAFLLENNMY 132
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++I GAK E + A ++ L +L
Sbjct: 133 EPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAELD 185
>gi|302347997|ref|YP_003815635.1| TATA-box-binding protein [Acidilobus saccharovorans 345-15]
gi|302328409|gb|ADL18604.1| TATA-box-binding protein [Acidilobus saccharovorans 345-15]
Length = 207
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+ + LDLN I +R+ +YNP +F GL+ ++ +P+ T L F+SGK+++ GA
Sbjct: 33 IENIVATVILENTLDLNLIEARIPDVDYNPDQFPGLVYRLQSPKITALVFKSGKMVVTGA 92
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
K A + K K + I QG +I NIV + ++ V L+ V S
Sbjct: 93 KSVKQLVWAVKAILK--KFITKGIVIQGRPQIQIQNIVASANLNVVVDLEKAAFVLPH-S 149
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RM KPRVVLLIF +G++
Sbjct: 150 MYEPEQFPGLIFRMDKPRVVLLIFSSGKM 178
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + LDLN I +R+ +YNP +F GL+ ++ +P+ T L F+SGK+++ GAK
Sbjct: 35 NIVATVILENTLDLNLIEARIPDVDYNPDQFPGLVYRLQSPKITALVFKSGKMVVTGAKS 94
Query: 100 EHDCKLASRKFAK--ILKQL---GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
A + K I K + G P+I +N+V + ++ +DL + + +S Y
Sbjct: 95 VKQLVWAVKAILKKFITKGIVIQGRPQI---QIQNIVASANLNVVVDLEKAAFVLPHSMY 151
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++ PR L F SGK++I GAK E++ A KIL +
Sbjct: 152 EPEQFPGLIFRMDKPRVVLLIFSSGKMVITGAKRENEVYEAVNNIYKILDE 202
>gi|288559645|ref|YP_003423131.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
gi|288542355|gb|ADC46239.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
Length = 181
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+G + L ++ + ++N +F GL+ K+ +P+T L F SGKL+ GA
Sbjct: 8 IENIVASASIGKDIVLTEVAKALEGVDFNREQFPGLVFKLQDPKTAALIFSSGKLVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D KLA +K +++ + I ++ KI NIV + +++ + L+A+ + + + Y
Sbjct: 68 KSIDDSKLAIKKTVDLMRTIDTEIPHEFDIKIQNIVASANLQSTLNLEAV-ALELENTEY 126
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ P+VVLL+F +G++
Sbjct: 127 EPEQFPGLVYRLSDPKVVLLLFGSGKV 153
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+G + L ++ + ++N +F GL+ K+ +P+T L F SGKL+ GAK
Sbjct: 10 NIVASASIGKDIVLTEVAKALEGVDFNREQFPGLVFKLQDPKTAALIFSSGKLVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D KLA +K +++ + P +N+V + ++ L+L + + +EY P
Sbjct: 70 IDDSKLAIKKTVDLMRTIDTEIPHEFDIKIQNIVASANLQSTLNLEAVALELENTEYEPE 129
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKL 194
+F GL+ ++ +P+ L F SGK++ GAK + D +L
Sbjct: 130 QFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTKQDARL 166
>gi|296241961|ref|YP_003649448.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
gi|296094545|gb|ADG90496.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
Length = 193
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 6/151 (3%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+ + LDL I +R+ Y P +F GLI ++ P+TT L F+SGK+++
Sbjct: 11 YKIENIVATVILEHELDLELIETRIPAITYKPDQFPGLIFRLDKPKTTALIFKSGKMVVT 70
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQ 241
GAK A ++ K+L L + IK G +I NIV + D+ V L+ ++
Sbjct: 71 GAKSTQQLIEAVKRMIKVL--LKYDIKVTGKPRIQIQNIVASGDIGAYVHLEKAAYLLED 128
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
S YEPE FPGLI+RM PRVVLLIF +G++
Sbjct: 129 -SMYEPEQFPGLIHRMRSPRVVLLIFSSGKM 158
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 8/151 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + LDL I +R+ Y P +F GLI ++ P+TT L F+SGK+++ GAK
Sbjct: 15 NIVATVILEHELDLELIETRIPAITYKPDQFPGLIFRLDKPKTTALIFKSGKMVVTGAKS 74
Query: 100 EHDCKLASRKFAKIL-----KQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
A ++ K+L K G P I +N+V + +G + L + + S Y
Sbjct: 75 TQQLIEAVKRMIKVLLKYDIKVTGKPRI---QIQNIVASGDIGAYVHLEKAAYLLEDSMY 131
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P +F GLI ++ +PR L F SGK++I G
Sbjct: 132 EPEQFPGLIHRMRSPRVVLLIFSSGKMVITG 162
>gi|345312931|ref|XP_001513505.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Ornithorhynchus anatinus]
Length = 170
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 26/153 (16%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++ C LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ G+
Sbjct: 20 LQNIVSTVNLACKLDLKRIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGS 79
Query: 187 KHEH-------DCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
+ D + R A F+ + V R P + D
Sbjct: 80 QKRPTGNVFLVDARDGDRALATF-----------SFRDVSTVKISLSRPPDRDD------ 122
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+YEPELFPGLIYRMVKPR+VLLIFV+G++
Sbjct: 123 --IPTYEPELFPGLIYRMVKPRIVLLIFVSGKV 153
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 26/158 (16%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ G++
Sbjct: 22 NIVSTVNLACKLDLKRIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGSQK 81
Query: 100 EH-------DCKLASRKFAKILKQLGHPEIIFFFFRNMVGT-ISVGCPLDLNQINSRVRY 151
D + R A F FR++ IS+ P D + I +
Sbjct: 82 RPTGNVFLVDARDGDRALAT------------FSFRDVSTVKISLSRPPDRDDIPT---- 125
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHE 189
Y P F GLI +++ PR L F SGK+++ G E
Sbjct: 126 --YEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGESGE 161
>gi|195964298|gb|ACG60160.1| TATA binding protein [Chaenocephalus aceratus]
Length = 173
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 77 LQNIVPTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 136
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 221
K E +LA+RK+A+++++LG P K+ FKI N+V
Sbjct: 137 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 171
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 79 NIVPTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 138
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGT 133
E +LA+RK+A+++++LG P + + F +NMVG+
Sbjct: 139 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 173
>gi|385805423|ref|YP_005841821.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
gi|383795286|gb|AFH42369.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
Length = 206
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 8/150 (5%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++ LDL++I +V EYNP +F GL+ ++ P+ T L F+SGK+++ G+
Sbjct: 20 IENIVATVTLDQQLDLHEIERKVPRVEYNPDQFPGLVFRLDRPKITALIFKSGKMVVTGS 79
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKL-DALHHVHSQF 242
K + A ++ K H IK G +I NIV + ++ V L DA + + +
Sbjct: 80 KSTQELITAVKRIIKTF--YNHGIKITGRPKIQIQNIVASANLNVDVNLEDAAYKLENNM 137
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RM P VVLLIF +G++
Sbjct: 138 --YEPEQFPGLIHRMTDPYVVLLIFSSGKM 165
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL++I +V EYNP +F GL+ ++ P+ T L F+SGK+++ G+K
Sbjct: 22 NIVATVTLDQQLDLHEIERKVPRVEYNPDQFPGLVFRLDRPKITALIFKSGKMVVTGSKS 81
Query: 100 EHDCKLASRKFAKI-----LKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ A ++ K +K G P+I +N+V + ++ ++L ++ + Y
Sbjct: 82 TQELITAVKRIIKTFYNHGIKITGRPKI---QIQNIVASANLNVDVNLEDAAYKLENNMY 138
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +P L F SGK++I GAK E + A K LK+L
Sbjct: 139 EPEQFPGLIHRMTDPYVVLLIFSSGKMVITGAKREEEVSKAVENIYKTLKELD 191
>gi|291191925|gb|ADD83026.1| TATA box binding protein [Gobiocypris rarus]
Length = 224
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 129 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 188
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 221
K E +LA+RK+A+++++LG P K+ FKI N+V
Sbjct: 189 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 223
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 131 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 190
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVG 132
E +LA+RK+A+++++LG P + + F +NMVG
Sbjct: 191 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVG 224
>gi|150400012|ref|YP_001323779.1| transcription factor [Methanococcus vannielii SB]
gi|166227822|sp|A6URP5.1|TBP_METVS RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150012715|gb|ABR55167.1| TATA-box binding [Methanococcus vannielii SB]
Length = 181
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 8 VNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLGHPEII---FFFFRNMVGTISVGCPLDLNQINSRVRYSEYN 155
+ D ++A +K K LK+ G EII +NMV T +G +L+ I S + +EY
Sbjct: 68 SKEDAEIAIKKIIKELKEAGM-EIIDNPVVSVQNMVATTELGMEPNLDDI-STLECTEYE 125
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
P +F GL+ ++ +P+ L F SGK++I G K D +A K + LK+L
Sbjct: 126 PEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKVIEDAYIAFDKISATLKELEQ 178
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GKL GAK + D ++A +K K LK+ G I + N+V T ++ LD +
Sbjct: 59 GKLNCTGAKSKEDAEIAIKKIIKELKEAGMEIIDNPVVSVQNMVATTELGMEPNLDDIST 118
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 119 LEC--TEYEPEQFPGLVYRLSDPKVVVLIFGSGKV 151
>gi|14423939|sp|P58178.1|TBP_SULSO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GA
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGA 73
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
K + A ++ K LK+ G IK G +I NIV + ++ V LD + +
Sbjct: 74 KSTEELIKAVKRIIKTLKKYG--IKIVGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-N 130
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RM PRVVLLIF +G++
Sbjct: 131 MYEPEQFPGLIFRMDDPRVVLLIFSSGKM 159
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 16 NIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKS 75
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ A ++ K LK+ +G P+I +N+V + ++ ++L++ + + Y
Sbjct: 76 TEELIKAVKRIIKTLKKYGIKIVGKPKI---QIQNIVASANLHVNVNLDKAAFLLENNMY 132
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++I GAK E + A ++ L +L
Sbjct: 133 EPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAELD 185
>gi|305663395|ref|YP_003859683.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
gi|304377964|gb|ADM27803.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
Length = 218
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 116 QLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLA 175
LG+P I N+V T+SV +DL+ ++ + EY+P +F GL+ ++ +P+ T L
Sbjct: 2 DLGNPNI-SVKIENIVATVSVDQTIDLDYLDKVLPNVEYDPDQFPGLVFRLESPKVTALI 60
Query: 176 FQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDA 234
F+SG++++ GAK D A ++ + L + PI + +I NIV + ++ + L+
Sbjct: 61 FRSGRMVVTGAKSTADLIKAVKRIVRTLLKYDIPITSKPRIQIQNIVASANLGSEIMLEK 120
Query: 235 LHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + YEPE FPGLIYRM P VVLL+F +G++
Sbjct: 121 VAFLLEN-TMYEPEQFPGLIYRMTDPHVVLLVFSSGKM 157
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+SV +DL+ ++ + EY+P +F GL+ ++ +P+ T L F+SG++++ GAK
Sbjct: 14 NIVATVSVDQTIDLDYLDKVLPNVEYDPDQFPGLVFRLESPKVTALIFRSGRMVVTGAKS 73
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D A ++ + L + P I +N+V + ++G + L ++ + + Y
Sbjct: 74 TADLIKAVKRIVRTLLKYDIPITSKPRI---QIQNIVASANLGSEIMLEKVAFLLENTMY 130
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +P L F SGK++I GAK E + A R LK+LG
Sbjct: 131 EPEQFPGLIYRMTDPHVVLLVFSSGKMVITGAKSEEEVFQAVRNLYLKLKELG 183
>gi|148642780|ref|YP_001273293.1| transcription factor [Methanobrevibacter smithii ATCC 35061]
gi|222445725|ref|ZP_03608240.1| hypothetical protein METSMIALI_01367 [Methanobrevibacter smithii
DSM 2375]
gi|261349727|ref|ZP_05975144.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
gi|166227821|sp|A5UL47.1|TBP_METS3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|148551797|gb|ABQ86925.1| transcription initiation factor TFIID TATA binding protein
[Methanobrevibacter smithii ATCC 35061]
gi|222435290|gb|EEE42455.1| transcription factor [Methanobrevibacter smithii DSM 2375]
gi|288861682|gb|EFC93980.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
Length = 181
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 89/147 (60%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+G + L +++ + +N +F GL+ K+ +P+T L F SGKL+ GA
Sbjct: 8 IENIVASASIGKDIVLTEVSEALEGVNFNREQFPGLVFKLKDPKTAALIFSSGKLVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D KLA +K +++ + I ++ KI NIV + ++ + L+A+ + + + Y
Sbjct: 68 KSIDDSKLAIKKTVDLMRTIDTEIPHEFEIKIQNIVASANLESTLNLEAV-ALELEDTEY 126
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ P+VVLL+F +G++
Sbjct: 127 EPEQFPGLVYRLSDPKVVLLLFGSGKV 153
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+G + L +++ + +N +F GL+ K+ +P+T L F SGKL+ GAK
Sbjct: 10 NIVASASIGKDIVLTEVSEALEGVNFNREQFPGLVFKLKDPKTAALIFSSGKLVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D KLA +K +++ + P +N+V + ++ L+L + + +EY P
Sbjct: 70 IDDSKLAIKKTVDLMRTIDTEIPHEFEIKIQNIVASANLESTLNLEAVALELEDTEYEPE 129
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ +P+ L F SGK++ GAK D KL + L +L
Sbjct: 130 QFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTRSDAKLGVERAYDRLSEL 178
>gi|374636062|ref|ZP_09707646.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
gi|373560320|gb|EHP86587.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
Length = 188
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 8/175 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 15 VNVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKVNCTGAK 74
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + ++A +K K LK G PE+ +NMV T +G +L+ I + +E
Sbjct: 75 SKEEAEVAIKKIIKELKDAGMDIIDDPEV---KVQNMVATADLGIEPNLDDIALMIEGTE 131
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K E D ++A K + L+++
Sbjct: 132 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKKEGDAEIALNKILETLREIEE 186
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + +G +DL + + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 16 NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKVNCTGAKS 75
Query: 189 EHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ + ++A +K K LK G I K+ N+V T D+ LD + + + + YEP
Sbjct: 76 KEEAEVAIKKIIKELKDAGMDIIDDPEVKVQNMVATADLGIEPNLDDI-ALMIEGTEYEP 134
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGL+YR+ P+VV+LIF +G++
Sbjct: 135 EQFPGLVYRLDDPKVVVLIFGSGKV 159
>gi|242015292|ref|XP_002428298.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512883|gb|EEB15560.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 289
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 112 KILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPR 170
K L++ PEI N+V + SV C L+L +I + EY K +G++ MK+ P
Sbjct: 40 KHLEEEPAPEIDIVI-NNVVCSFSVRCHLNLKEIATHGANVEYR--KENGMVTMKLRKPY 96
Query: 171 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPV 230
TT + SGK+ GA E + K+A+R+FA+ L++LG +++ F++ N++ TC + F +
Sbjct: 97 TTASIWSSGKITCTGATSEDNAKIAARRFARSLQKLGFEVRFNNFRVVNVLGTCSMPFGI 156
Query: 231 KLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
K+++ + + + YEPE+ PG+ YR+ P+ L IF G I
Sbjct: 157 KINSFSAKYPKQAEYEPEIHPGVTYRLKDPKATLKIFSTGSI 198
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L +I + EY K +G++ MK+ P TT + SGK+ GA
Sbjct: 56 NVVCSFSVRCHLNLKEIATHGANVEYR--KENGMVTMKLRKPYTTASIWSSGKITCTGAT 113
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRV-RYSEYN 155
E + K+A+R+FA+ L++LG E+ F FR N++GT S+ + +N +++ + +EY
Sbjct: 114 SEDNAKIAARRFARSLQKLGF-EVRFNNFRVVNVLGTCSMPFGIKINSFSAKYPKQAEYE 172
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ ++ +P+ T F +G + +
Sbjct: 173 PEIHPGVTYRLKDPKATLKIFSTGSITVTA 202
>gi|161899533|ref|XP_001712992.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
gi|75756487|gb|ABA27380.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
Length = 204
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 182
I + N+V ++ + LDL +I R + +E+N +FHGLIM+ +P+ T + F+SG ++
Sbjct: 16 IAYKIHNVVLSVRLDSILDLKKIALRSKNTEFNSKRFHGLIMRSRDPKATAIVFKSGSMI 75
Query: 183 ILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQ 241
GAK E D K A KF KI++ G +K Q ++I NI T D + P+ L +H +
Sbjct: 76 CTGAKSEKDGKEAILKFVKIIRNAGFTDLKMQNYRITNIFATMDYKVPINLMQIHIAFPR 135
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +EPE+ GL+Y ++++ I+ +G+I
Sbjct: 136 ITKHEPEVHRGLLYYPFDTKLLVTIYASGKI 166
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL +I R + +E+N +FHGLIM+ +P+ T + F+SG ++ GAK
Sbjct: 22 NVVLSVRLDSILDLKKIALRSKNTEFNSKRFHGLIMRSRDPKATAIVFKSGSMICTGAKS 81
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEYNP 156
E D K A KF KI++ G ++ +R N+ T+ P++L QI+ + R +++ P
Sbjct: 82 EKDGKEAILKFVKIIRNAGFTDLKMQNYRITNIFATMDYKVPINLMQIHIAFPRITKHEP 141
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
GL+ + + + SGK+ I GAK
Sbjct: 142 EVHRGLLYYPFDTKLLVTIYASGKITITGAK 172
>gi|24638240|sp|Q971V3.2|TBP_SULTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V T+++ LDL + V EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 16 ENIVATVTLDQNLDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAK 75
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ A ++ K LK+ G + + +I NIV + ++ V LD + + YE
Sbjct: 76 STDELIKAVKRIIKTLKRYGMNLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYE 134
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLIYRM PRVVLLIF +G++
Sbjct: 135 PEQFPGLIYRMEDPRVVLLIFSSGKM 160
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL + V EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 17 NIVATVTLDQNLDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKS 76
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ A ++ K LK+ G P+I +N+V + ++ ++L++ + + Y
Sbjct: 77 TDELIKAVKRIIKTLKRYGMNLTGKPKI---QIQNIVASANLHVIVNLDKAAFLLENNMY 133
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++I GAK E + A +K L +L
Sbjct: 134 EPEQFPGLIYRMEDPRVVLLIFSSGKMVITGAKREEEVHKAVKKIFDKLVELD 186
>gi|195393646|ref|XP_002055464.1| GJ19385 [Drosophila virilis]
gi|194149974|gb|EDW65665.1| GJ19385 [Drosophila virilis]
Length = 711
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 10/161 (6%)
Query: 116 QLGHPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRT 171
Q PE+ N+V + SV C L L +I S V Y N G++ MK+ P T
Sbjct: 272 QDAEPELDIVI-NNVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKLRRPYT 325
Query: 172 TCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVK 231
T + SG++ GA E K+A+R++A+ L +LG P +Q F+I N++ TC + + +K
Sbjct: 326 TASIWSSGRITCTGATSESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIK 385
Query: 232 LDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ H +SYEPEL PG+ Y+M +P+ L IF G I
Sbjct: 386 IVNFSERHRDNASYEPELHPGVTYKMREPKATLKIFSTGSI 426
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 13/154 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L L +I S V Y N G++ MK+ P TT + SG++
Sbjct: 284 NVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKLRRPYTTASIWSSGRITCT 338
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YS 152
GA E K+A+R++A+ L +LG P F FR N++GT S+ + + + R R +
Sbjct: 339 GATSESQAKIAARRYARCLSKLGFP-THFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNA 397
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P G+ K+ P+ T F +G + + A
Sbjct: 398 SYEPELHPGVTYKMREPKATLKIFSTGSITVTAA 431
>gi|195134909|ref|XP_002011879.1| GI14331 [Drosophila mojavensis]
gi|193909133|gb|EDW08000.1| GI14331 [Drosophila mojavensis]
Length = 656
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 111 AKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKI 166
+K PE+ N+V + SV C L L +I S V Y N G++ MK+
Sbjct: 250 SKTTDPDAEPELDIVI-NNVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKL 303
Query: 167 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDV 226
P TT + SG++ GA E K+A+R++A+ L +LG P +Q F+I N++ TC +
Sbjct: 304 RRPYTTASIWSSGRITCTGATSESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSM 363
Query: 227 RFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +K+ H +SYEPEL PG+ Y+M +P+ L IF G I
Sbjct: 364 PWAIKIVNFSERHRDNASYEPELHPGVTYKMREPKATLKIFSTGSI 409
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 13/154 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L L +I S V Y N G++ MK+ P TT + SG++
Sbjct: 267 NVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKLRRPYTTASIWSSGRITCT 321
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YS 152
GA E K+A+R++A+ L +LG P F FR N++GT S+ + + + R R +
Sbjct: 322 GATSESQAKIAARRYARCLSKLGFP-THFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNA 380
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P G+ K+ P+ T F +G + + A
Sbjct: 381 SYEPELHPGVTYKMREPKATLKIFSTGSITVTAA 414
>gi|348686462|gb|EGZ26277.1| hypothetical protein PHYSODRAFT_484921 [Phytophthora sojae]
Length = 161
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 83/124 (66%), Gaps = 2/124 (1%)
Query: 150 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
R +E P K + ++MK+ NP+ T + F +GKL+ GA+ E K +R+F ++++++ P
Sbjct: 14 RRAELVPKK-NCILMKLHNPKATAMLFANGKLVCTGAETEEAIKNVARRFTQVIQKMDFP 72
Query: 210 -IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFV 268
+ FKI N+V TCD+ F V ++A+ HS +YEPEL+P LIYR+ KP+V +L+FV
Sbjct: 73 GVNLIDFKIQNVVGTCDLGFRVLVEAIAFAHSDCCTYEPELYPALIYRLDKPQVKVLVFV 132
Query: 269 NGRI 272
+G++
Sbjct: 133 SGKV 136
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 61 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 120
R +E P K + ++MK+ NP+ T + F +GKL+ GA+ E K +R+F ++++++ P
Sbjct: 14 RRAELVPKK-NCILMKLHNPKATAMLFANGKLVCTGAETEEAIKNVARRFTQVIQKMDFP 72
Query: 121 --EIIFFFFRNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 177
+I F +N+VGT +G + + I + Y P + LI ++ P+ L F
Sbjct: 73 GVNLIDFKIQNVVGTCDLGFRVLVEAIAFAHSDCCTYEPELYPALIYRLDKPQVKVLVFV 132
Query: 178 SGKLLILGAKHEHD 191
SGK++ +K +
Sbjct: 133 SGKVVFTDSKEPRE 146
>gi|315231074|ref|YP_004071510.1| TATA-box binding protein [Thermococcus barophilus MP]
gi|315184102|gb|ADT84287.1| TATA-box binding protein [Thermococcus barophilus MP]
Length = 190
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFTQLDLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K ++L ++G P+I +NMV + +G +L+ + + EY
Sbjct: 73 VEDIERAVSKLVQMLSKIGTKFQRAPQID---IQNMVFSGDIGMEFNLDAVALVLPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ PR L F SGK++ GAK EHD A RK + L++ G
Sbjct: 130 EPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEHDAWEAVRKLLRELEKYG 182
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + LDL ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 12 ENIVASVDLFTQLDLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ---GFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
D + A K ++L ++G K+Q I N+V + D+ LDA+ V
Sbjct: 72 SVEDIERAVSKLVQMLSKIGT--KFQRAPQIDIQNMVFSGDIGMEFNLDAVALVLPN-CE 128
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 129 YEPEQFPGVIYRVKEPRAVILLFSSGKI 156
>gi|156937779|ref|YP_001435575.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
gi|156566763|gb|ABU82168.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
Length = 207
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYS-EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+V T+S+ +DL +I + EY+P +F GLI ++ PR T L F+SGK+++ GAK
Sbjct: 15 NIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLIFRLEEPRVTALIFKSGKMVVTGAK 74
Query: 99 HEHDCKLASRKFAKILKQLG------HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS 152
+ A +K ILK G P I +N+V + ++G + L + + S
Sbjct: 75 STQELITAVKKIFYILKSKGIVSGKVRPRI---QIQNIVASANLGVEVHLEKAAYLLENS 131
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P +F GLI ++ PR L F SGK+++ GAK E + A K + LK+ G
Sbjct: 132 MYEPEQFPGLIYRLDEPRVVLLLFSSGKMVVTGAKKEEEVSKAVEKVFQNLKEKG 186
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 12/153 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYS-EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V T+S+ +DL +I + EY+P +F GLI ++ PR T L F+SGK+++ G
Sbjct: 13 IENIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLIFRLEEPRVTALIFKSGKMVVTG 72
Query: 186 AKHEHDCKLASRKFAKILKQLG------HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVH 239
AK + A +K ILK G P +I NIV + ++ V L+ ++
Sbjct: 73 AKSTQELITAVKKIFYILKSKGIVSGKVRP----RIQIQNIVASANLGVEVHLEKAAYLL 128
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
S YEPE FPGLIYR+ +PRVVLL+F +G++
Sbjct: 129 EN-SMYEPEQFPGLIYRLDEPRVVLLLFSSGKM 160
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 214 GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
KI NIV T + + L+ + Y+P+ FPGLI+R+ +PRV LIF +G++
Sbjct: 10 SIKIENIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLIFRLEEPRVTALIFKSGKM 68
>gi|298712244|emb|CBJ26695.1| transcription initiation factor TFIID [Ectocarpus siliculosus]
Length = 214
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 122 IIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKL 181
++ +N+ T+++ +D + + +++R++EYNP K ++M+I P+ T L F SGK+
Sbjct: 30 VVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKV 89
Query: 182 LILGAKHEHDCKLASRKFAKILKQLG-HPIKYQG---FKIHNIVCTCDVRFPVKLDALHH 237
+I GA + A+++F +++ +G +P F + N+V T +V P+ L+ + +
Sbjct: 90 VITGAAGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAY 149
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+++ YEPELFPGLIY+ VV +F +GR+
Sbjct: 150 CQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRV 184
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+ T+++ +D + + +++R++EYNP K ++M+I P+ T L F SGK++I GA
Sbjct: 37 NVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAG 96
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINS-RVRYSE 153
+ A+++F +++ +G +P + F +NMV T V P+ L + + R+
Sbjct: 97 VEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCM 156
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
Y P F GLI + + F SG++++ G K E A + IL Q P
Sbjct: 157 YEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQP 212
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 40 NMVGTISVGCPLDLNQINS-RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
NMV T V P+ L + + R+ Y P F GLI + + F SG++++ G K
Sbjct: 131 NMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGK 190
Query: 99 HEHDCKLASRKFAKILKQLGHPE 121
E A + IL Q P+
Sbjct: 191 QEDHLNEALVRLLPILNQYRQPD 213
>gi|320100857|ref|YP_004176449.1| TATA-binding protein of transcription factor TFIID [Desulfurococcus
mucosus DSM 2162]
gi|319753209|gb|ADV64967.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
mucosus DSM 2162]
Length = 193
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 2/149 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++
Sbjct: 11 YRVENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVT 70
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
G K A +K K+ + G ++ + +I NIV D+ V L+ + H + S
Sbjct: 71 GTKSTQQLVEAVKKIIKVFMKSGVDVRGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDS 129
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RM PRVVLLIF +G++
Sbjct: 130 MYEPEQFPGLIHRMRDPRVVLLIFSSGKM 158
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++ G K
Sbjct: 15 NIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGTKS 74
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
A +K K+ + G P + +N+V + ++L + + S Y
Sbjct: 75 TQQLVEAVKKIIKVFMKSGVDVRGRPRV---QIQNIVAGGDIHAYVNLEKAAYHLEDSMY 131
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 203
P +F GLI ++ +PR L F SGK++I GAK E + + A A+ L
Sbjct: 132 EPEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEESEVERAVVNIARQL 180
>gi|390986539|gb|AFM35789.1| hypothetical protein, partial [Oryza eichingeri]
Length = 88
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 65/88 (73%)
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
+F +IM+I P+TT L F SGK++ GAK E KLA+RK+A+I+++LG P K++ FKI
Sbjct: 1 RFAAVIMRIREPKTTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKI 60
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSY 245
NIV +CDV+FP++L+ L + H FSSY
Sbjct: 61 QNIVGSCDVKFPIRLEGLAYSHGAFSSY 88
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 69 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFF 127
+F +IM+I P+TT L F SGK++ GAK E KLA+RK+A+I+++LG P + F
Sbjct: 1 RFAAVIMRIREPKTTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKI 60
Query: 128 RNMVGTISVGCPLDLN 143
+N+VG+ V P+ L
Sbjct: 61 QNIVGSCDVKFPIRLE 76
>gi|405976239|gb|EKC40752.1| TATA box-binding-like protein 1 [Crassostrea gigas]
Length = 280
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQ 177
P I N+V + + C L+L I + EY + ++ MKI P TT +
Sbjct: 43 EPPTIDIIINNVVCSFNTRCHLNLRSIAMEGSHVEYR--REQSMVNMKIRRPYTTATIWS 100
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SGK++ GA E + K+A+RKFA+ L++LG+ + + F++ N++ TC + F +K+
Sbjct: 101 SGKIVCTGATSEEESKIAARKFARKLQRLGYKVTFTNFRVVNVLGTCGMPFRIKIAGFSQ 160
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H + +SYEPEL PG+ Y++ P+ L IF G I
Sbjct: 161 KHPKDASYEPELHPGVTYKIKDPKATLKIFSTGSI 195
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 7/150 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + + C L+L I + EY + ++ MKI P TT + SGK++ GA
Sbjct: 53 NVVCSFNTRCHLNLRSIAMEGSHVEYR--REQSMVNMKIRRPYTTATIWSSGKIVCTGAT 110
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSR-VRYSEYN 155
E + K+A+RKFA+ L++LG+ ++ F FR N++GT + + + + + + + Y
Sbjct: 111 SEEESKIAARKFARKLQRLGY-KVTFTNFRVVNVLGTCGMPFRIKIAGFSQKHPKDASYE 169
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ KI +P+ T F +G + +
Sbjct: 170 PELHPGVTYKIKDPKATLKIFSTGSITVTA 199
>gi|73668595|ref|YP_304610.1| transcription factor [Methanosarcina barkeri str. Fusaro]
gi|72395757|gb|AAZ70030.1| TATA binding protein of transcription factor TFIID [Methanosarcina
barkeri str. Fusaro]
Length = 184
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ DL +I +R+ +EYN KF GL+ + NP+ L F SGK++ GAK
Sbjct: 9 NVVASTTLAEDFDLQKIEARLEKAEYNKAKFPGLVYRTENPKAAFLIFTSGKVVCTGAKT 68
Query: 100 EHDCKLASRKFAKILKQLG------HPEIIFFFFRNMVGTISVGCPLDLNQINSR--VRY 151
+ K+A A LK +G P++ +N+V T + L+LN I +
Sbjct: 69 VDNAKMAIINLASTLKSIGCEKINPEPDV---HIQNIVATADLETNLNLNTIVIAFGMEN 125
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P F GL+ ++ +PR L F SGKL+I G K DC+ R K LG
Sbjct: 126 VEYEPEVFPGLVYRLEDPRVVVLIFSSGKLVITGGKSPEDCEEGLRVIKKEFDNLG 181
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + ++ DL +I +R+ +EYN KF GL+ + NP+ L F SGK++ GAK
Sbjct: 8 ENVVASTTLAEDFDLQKIEARLEKAEYNKAKFPGLVYRTENPKAAFLIFTSGKVVCTGAK 67
Query: 188 HEHDCKLASRKFAKILKQLG-HPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHS-QFSS 244
+ K+A A LK +G I + I NIV T D+ + L+ + +
Sbjct: 68 TVDNAKMAIINLASTLKSIGCEKINPEPDVHIQNIVATADLETNLNLNTIVIAFGMENVE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPGL+YR+ PRVV+LIF +G++
Sbjct: 128 YEPEVFPGLVYRLEDPRVVVLIFSSGKL 155
>gi|212224460|ref|YP_002307696.1| transcription factor [Thermococcus onnurineus NA1]
gi|226703563|sp|B6YXI6.1|TBP_THEON RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|212009417|gb|ACJ16799.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Thermococcus onnurineus NA1]
Length = 192
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGH-----PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K ++LK++G P+I +NMV + +G +L+ + + EY
Sbjct: 73 VEDIERAVNKLIQMLKRIGAKFQRAPQI---DIQNMVFSGDIGMEFNLDAVALSLPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ PR L F SGK++ GAK EHD A RK + L++ G
Sbjct: 130 EPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEHDAWEAVRKLLRELEKYG 182
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 12 ENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ---GFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
D + A K ++LK++G K+Q I N+V + D+ LDA+ +
Sbjct: 72 SVEDIERAVNKLIQMLKRIGA--KFQRAPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNCE 128
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 129 YEPEQFPGVIYRVKEPRAVILLFSSGKI 156
>gi|390961570|ref|YP_006425404.1| TATA-box binding protein [Thermococcus sp. CL1]
gi|390519878|gb|AFL95610.1| TATA-box binding protein [Thermococcus sp. CL1]
Length = 187
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 10 NIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGH-----PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K ++LK++G P+I +NMV + +G +L+ + + EY
Sbjct: 70 VEDIERAVNKLIQMLKKIGAKFGRAPQI---DIQNMVFSGDIGMEFNLDAVALSLPNCEY 126
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ PR L F SGK++ GAK EHD A RK + L++ G
Sbjct: 127 EPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEHDAWEAVRKLLRELEKYG 179
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 9 ENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGAK 68
Query: 188 HEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D + A K ++LK++G + I N+V + D+ LDA+ + YE
Sbjct: 69 SVEDIERAVNKLIQMLKKIGAKFGRAPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNCEYE 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 128 PEQFPGVIYRVKEPRAVILLFSSGKI 153
>gi|341582887|ref|YP_004763379.1| transcription factor [Thermococcus sp. 4557]
gi|340810545|gb|AEK73702.1| transcription factor [Thermococcus sp. 4557]
Length = 190
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGH-----PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K ++LK++G P+I +NMV + +G +L+ + + EY
Sbjct: 73 VEDIERAVNKLIQMLKKIGAKFARAPQI---DIQNMVFSGDIGMEFNLDAVALSLPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ PR L F SGK++ GAK EHD A RK + L++ G
Sbjct: 130 EPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEHDAWEAVRKLLRELEKYG 182
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 12 ENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D + A K ++LK++G + I N+V + D+ LDA+ + YE
Sbjct: 72 SVEDIERAVNKLIQMLKKIGAKFARAPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNCEYE 130
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 131 PEQFPGVIYRVKEPRAVILLFSSGKI 156
>gi|427787417|gb|JAA59160.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 321
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 8/190 (4%)
Query: 89 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPE-----IIFFFFRNMVGTISVGCPLDLN 143
S + + A + D +AS + + G E +I N+V + SV C L+L
Sbjct: 41 SQQQQLESAGQQQDVVVASSEVMEQPAAAGGTEADSSPVIDIVINNVVCSFSVRCHLNLR 100
Query: 144 QINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKI 202
QI EY + +G L MKI P TT + SGK+ GA E KLA+R++A+I
Sbjct: 101 QIALTASNVEYR--RENGMLTMKIRTPYTTASMWSSGKVTCTGATSEETAKLAARRYARI 158
Query: 203 LKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRV 262
L++LG +K+ +++ N++ TC + F +KL + +SYEPEL PG+ Y++ +
Sbjct: 159 LQKLGFRVKFMNYRVVNVLGTCTMPFAIKLIPFSQSNRPIASYEPELHPGVTYKIKDLKA 218
Query: 263 VLLIFVNGRI 272
L IF G I
Sbjct: 219 TLKIFSTGSI 228
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L QI EY + +G L MKI P TT + SGK+ GA
Sbjct: 86 NVVCSFSVRCHLNLRQIALTASNVEYR--RENGMLTMKIRTPYTTASMWSSGKVTCTGAT 143
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDL---NQINSRVRYSE 153
E KLA+R++A+IL++LG + F +R N++GT ++ + L +Q N + +
Sbjct: 144 SEETAKLAARRYARILQKLGF-RVKFMNYRVVNVLGTCTMPFAIKLIPFSQSNRPI--AS 200
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P G+ KI + + T F +G + +
Sbjct: 201 YEPELHPGVTYKIKDLKATLKIFSTGSITVTA 232
>gi|134046443|ref|YP_001097928.1| transcription factor [Methanococcus maripaludis C5]
gi|132664068|gb|ABO35714.1| TATA binding protein of transcription factor TFIID [Methanococcus
maripaludis C5]
Length = 181
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 9/177 (5%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 8 VNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ D +A K K LK+ G +PE+ +NMV T +G +L+ I S + +E
Sbjct: 68 CKEDAVIAINKITKELKEAGMDLIDNPEV---NVQNMVATTELGMEPNLDDI-STLECTE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPI 210
Y P +F GL+ ++ +P+ L F SGK++I G K D A K +K LK+L +
Sbjct: 124 YEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKVIEDAYRAYEKISKTLKELEEEL 180
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GKL GAK + D +A K K LK+ G I + N+V T ++ LD +
Sbjct: 59 GKLNCTGAKCKEDAVIAINKITKELKEAGMDLIDNPEVNVQNMVATTELGMEPNLDDIST 118
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 119 L--ECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKV 151
>gi|336121024|ref|YP_004575799.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
gi|334855545|gb|AEH06021.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
Length = 181
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + +EY P +F GL+ ++ P+ L F+SGKL GAK
Sbjct: 8 VNVVVSTKIGNDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ + ++A +K LK+ G +PE+ +NMV T +G +L+ I + + +E
Sbjct: 68 SKEEAEIAIKKVIGYLKEAGFEIDENPEV---KVQNMVATAELGIEPNLDDI-ATLEGTE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ NP+ L F SGK++I G KH+ D +A K LK++
Sbjct: 124 YEPEQFPGLVYRLDNPKVVVLIFGSGKVVITGLKHKEDAYIALEKILNTLKEMEE 178
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 82/145 (56%), Gaps = 3/145 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + +G +DL + +EY P +F GL+ ++ P+ L F+SGKL GAK
Sbjct: 9 NVVVSTKIGNDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGAKS 68
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ + ++A +K LK+ G I K+ N+V T ++ LD + + + YEP
Sbjct: 69 KEEAEIAIKKVIGYLKEAGFEIDENPEVKVQNMVATAELGIEPNLDDIATLEG--TEYEP 126
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGL+YR+ P+VV+LIF +G++
Sbjct: 127 EQFPGLVYRLDNPKVVVLIFGSGKV 151
>gi|150400624|ref|YP_001324390.1| transcription factor [Methanococcus aeolicus Nankai-3]
gi|166227819|sp|A6UTF6.1|TBP_META3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150013327|gb|ABR55778.1| TATA-box binding protein [Methanococcus aeolicus Nankai-3]
Length = 181
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + + SEY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 8 VNVVVSTKIGDDIDLEYVADVLDNSEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ D +A K + L++ G PE+ +NMV T +G +L+ +++ R +E
Sbjct: 68 SKEDAVIAINKVMEYLREAGLDLIDTPEV---KVQNMVATAELGMEPNLDDLSTLER-TE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K++ D +A K +K+L
Sbjct: 124 YEPEQFPGLVYRMESPKVVLLVFGSGKVVITGLKNKEDAYIALEKIKNTVKELEE 178
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + +G +DL + + SEY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 9 NVVVSTKIGDDIDLEYVADVLDNSEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 189 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ D +A K + L++ G I K+ N+V T ++ LD L + + YEP
Sbjct: 69 KEDAVIAINKVMEYLREAGLDLIDTPEVKVQNMVATAELGMEPNLDDLSTLER--TEYEP 126
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGL+YRM P+VVLL+F +G++
Sbjct: 127 EQFPGLVYRMESPKVVLLVFGSGKV 151
>gi|315427150|dbj|BAJ48765.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|315427168|dbj|BAJ48782.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|343485784|dbj|BAJ51438.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
Length = 187
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 10/151 (6%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V ++++ LDL QI EY P +F GL+ ++ P+T L F SGK++ GA
Sbjct: 11 IQNVVSSVTLFQKLDLAQIQRTFPDVEYKPAQFPGLVFRLAKPKTATLIFSSGKMVCTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLD----ALHHVHSQ 241
K E + A R K LK+ G I+ + +I NIV + D+ + L+ L +V
Sbjct: 71 KSEEESIRAVRTVVKALKKEGFVIREEPQIEIQNIVASIDLHGRIDLERAATTLENVM-- 128
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLIYRM P+VV+L+F +G++
Sbjct: 129 ---YEPEQFPGLIYRMNSPKVVILMFASGKL 156
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++++ LDL QI EY P +F GL+ ++ P+T L F SGK++ GAK
Sbjct: 13 NVVSSVTLFQKLDLAQIQRTFPDVEYKPAQFPGLVFRLAKPKTATLIFSSGKMVCTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E + A R K LK+ G P+I +N+V +I + +DL + + + Y
Sbjct: 73 EEESIRAVRTVVKALKKEGFVIREEPQI---EIQNIVASIDLHGRIDLERAATTLENVMY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++ +P+ L F SGKL+ GAK+E D A K ++L++
Sbjct: 130 EPEQFPGLIYRMNSPKVVILMFASGKLVCTGAKYEKDVYDAVNKLQQLLEE 180
>gi|312136408|ref|YP_004003745.1| tata binding protein of transcription factor tfiid [Methanothermus
fervidus DSM 2088]
gi|311224127|gb|ADP76983.1| TATA binding protein of transcription factor TFIID [Methanothermus
fervidus DSM 2088]
Length = 183
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G P+DL++I+ ++ +N +F GL+ K+ P+T L F SGKL+ GA
Sbjct: 10 IENIVASATLGRPIDLSKISKALKSVNFNRKQFPGLVYKLDKPKTAALIFGSGKLVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGH--PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
K D A + ++++ P Y+ KI NIV + ++ P+ LD + +
Sbjct: 70 KSVEDSIKAIKTTVNKIREVDPDIPEDYE-IKIQNIVASANLSKPLNLDEIAMTLEN-TE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ KP+VVLL+F +G++
Sbjct: 128 YEPEQFPGLVYRLDKPKVVLLLFGSGKV 155
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 96/169 (56%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G P+DL++I+ ++ +N +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 12 NIVASATLGRPIDLSKISKALKSVNFNRKQFPGLVYKLDKPKTAALIFGSGKLVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D A + ++++ PE +N+V + ++ PL+L++I + +EY P
Sbjct: 72 VEDSIKAIKTTVNKIREVDPDIPEDYEIKIQNIVASANLSKPLNLDEIAMTLENTEYEPE 131
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ P+ L F SGK++ GA+ D KL +K + LK+L
Sbjct: 132 QFPGLVYRLDKPKVVLLLFGSGKVVCTGARDPKDAKLGVKKTKERLKEL 180
>gi|2833470|sp|Q56253.1|TBP_THECE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|498255|gb|AAA73412.1| TATA-binding protein [Thermococcus celer]
Length = 189
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + L+L ++ +S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 10 NIVASVDLFTQLNLERVIEMCPHSKYNPEEFPGIICRFDEPKVALLIFSSGKLVVTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K ++LK++G P+I +NMV + +G +L+ + + EY
Sbjct: 70 VEDIERAVNKLIQMLKKIGAKFSRAPQID---IQNMVFSGDIGMEFNLDAVALSLPNCEY 126
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F G+I ++ PR L F SGK++ GAK EHD A RK + L++
Sbjct: 127 EPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEHDAWEAVRKLLRELEK 177
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + L+L ++ +S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 9 ENIVASVDLFTQLNLERVIEMCPHSKYNPEEFPGIICRFDEPKVALLIFSSGKLVVTGAK 68
Query: 188 HEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D + A K ++LK++G + I N+V + D+ LDA+ + YE
Sbjct: 69 SVEDIERAVNKLIQMLKKIGAKFSRAPQIDIQNMVFSGDIGMEFNLDAV-ALSLPNCEYE 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 128 PEQFPGVIYRVKEPRAVILLFSSGKI 153
>gi|337284406|ref|YP_004623880.1| transcription factor [Pyrococcus yayanosii CH1]
gi|334900340|gb|AEH24608.1| transcription factor [Pyrococcus yayanosii CH1]
Length = 191
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D + A K ++LK +G +NMV + +G +L+ + + EY P
Sbjct: 73 VEDIERAVGKLVQMLKGIGVSFKRAPLIDIQNMVFSGDIGREFNLDTVALSLPNCEYEPE 132
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F G+I ++ PR L F SGK++ GAK EHD A RK + L++ G
Sbjct: 133 QFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEHDAWEAVRKLLRELEKYG 182
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLDLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D + A K ++LK +G K I N+V + D+ LD + + Y
Sbjct: 71 KSVEDIERAVGKLVQMLKGIGVSFKRAPLIDIQNMVFSGDIGREFNLDTV-ALSLPNCEY 129
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 130 EPEQFPGVIYRVKEPRAVILLFSSGKI 156
>gi|7960166|gb|AAF71245.1| TA-TA binding protein 1 [Gallus gallus]
gi|7960168|gb|AAF71246.1| TA-TA binding protein 1 [Gallus gallus]
Length = 210
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GA
Sbjct: 116 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 175
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHN 219
K E +LA+RK+A+++++LG P K+ FKI
Sbjct: 176 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQT 208
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 118 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 177
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFF 126
E +LA+RK+A+++++LG P F
Sbjct: 178 EEQSRLAARKYARVVQKLGFPAKFLDF 204
>gi|297620217|ref|YP_003708322.1| TATA-box binding family protein [Methanococcus voltae A3]
gi|297379194|gb|ADI37349.1| TATA-box binding family protein [Methanococcus voltae A3]
Length = 181
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 9/175 (5%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 8 VNVVVSTQIGTDIDLEYAADVLDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ D ++A +K LK+ G +PE+ +NMV T +G +L+ I S + +E
Sbjct: 68 SKSDAEIAIKKIIAELKEAGMEIIDNPEV---SIQNMVATTELGMEPNLDDI-STLECTE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K D A K LK+L
Sbjct: 124 YEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKKIDDAYTAFNKILTTLKELEE 178
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTQIGTDIDLEYAADVLDNAEYEPEQFPGLVCRLSDPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GKL GAK + D ++A +K LK+ G I I N+V T ++ LD +
Sbjct: 59 GKLNCTGAKSKSDAEIAIKKIIAELKEAGMEIIDNPEVSIQNMVATTELGMEPNLDDIST 118
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 119 LEC--TEYEPEQFPGLVYRLSDPKVVVLIFGSGKV 151
>gi|170291079|ref|YP_001737895.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175159|gb|ACB08212.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 211
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 107 SRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKI 166
+ +ILK + PEI +N+V + + LDL++I+ R++ S Y+P KF GL++KI
Sbjct: 18 EERIQRILKNIREPEIAI---QNVVSSADIRQRLDLHEISRRIKKSRYDPEKFPGLVLKI 74
Query: 167 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCD 225
P+ L F SGK + G K + A ++L++ G +K + K NIV +
Sbjct: 75 DEPKAALLLFSSGKFVCTGTKSVEESAKAINAAIEVLQKHGIEVKGRPLIKAENIVASAK 134
Query: 226 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 270
+ V ++ L + + + YEPE FPGLI+RM P VV LIF +G
Sbjct: 135 LHVKVDIERL-ALELENTLYEPEQFPGLIFRMKDPDVVFLIFASG 178
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + LDL++I+ R++ S Y+P KF GL++KI P+ L F SGK + G K
Sbjct: 37 NVVSSADIRQRLDLHEISRRIKKSRYDPEKFPGLVLKIDEPKAALLLFSSGKFVCTGTKS 96
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ A ++L++ G P N+V + + +D+ ++ + + Y
Sbjct: 97 VEESAKAINAAIEVLQKHGIEVKGRP---LIKAENIVASAKLHVKVDIERLALELENTLY 153
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
P +F GLI ++ +P L F SG L+ GAK E D + A K IL + G+
Sbjct: 154 EPEQFPGLIFRMKDPDVVFLIFASGSLVCTGAKKESDVRRAVYKLRDILARKGY 207
>gi|227827548|ref|YP_002829328.1| transcription factor [Sulfolobus islandicus M.14.25]
gi|227830235|ref|YP_002832015.1| transcription factor [Sulfolobus islandicus L.S.2.15]
gi|229579050|ref|YP_002837448.1| transcription factor [Sulfolobus islandicus Y.G.57.14]
gi|229582199|ref|YP_002840598.1| transcription factor [Sulfolobus islandicus Y.N.15.51]
gi|229584751|ref|YP_002843253.1| transcription factor [Sulfolobus islandicus M.16.27]
gi|238619705|ref|YP_002914531.1| transcription factor [Sulfolobus islandicus M.16.4]
gi|284997658|ref|YP_003419425.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|385773217|ref|YP_005645783.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
gi|385775851|ref|YP_005648419.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|227456683|gb|ACP35370.1| TATA-box binding family protein [Sulfolobus islandicus L.S.2.15]
gi|227459344|gb|ACP38030.1| TATA-box binding family protein [Sulfolobus islandicus M.14.25]
gi|228009764|gb|ACP45526.1| TATA-box binding family protein [Sulfolobus islandicus Y.G.57.14]
gi|228012915|gb|ACP48676.1| TATA-box binding family protein [Sulfolobus islandicus Y.N.15.51]
gi|228019801|gb|ACP55208.1| TATA-box binding family protein [Sulfolobus islandicus M.16.27]
gi|238380775|gb|ACR41863.1| TATA-box binding family protein [Sulfolobus islandicus M.16.4]
gi|284445553|gb|ADB87055.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|323474599|gb|ADX85205.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|323477331|gb|ADX82569.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
Length = 181
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Query: 131 VGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 190
+ T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 191 DCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ A ++ K LK+ G IK G +I NIV + ++ V LD + + YEP
Sbjct: 61 ELIKAVKRIIKTLKKYG--IKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-NMYEP 117
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM PRVVLLIF +G++
Sbjct: 118 EQFPGLIFRMDDPRVVLLIFSSGKM 142
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 42 VGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 101
+ T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 102 DCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
+ A ++ K LK+ +G P+I +N+V + ++ ++L++ + + Y P
Sbjct: 61 ELIKAVKRIIKTLKKYGIKIMGKPKI---QIQNIVASANLHVNVNLDKAAFLLENNMYEP 117
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F GLI ++ +PR L F SGK++I GAK E + A ++ L +L
Sbjct: 118 EQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAELD 168
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I GAK
Sbjct: 90 NIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKR 149
Query: 100 EHDCKLASRKFAKILKQLG 118
E + A ++ L +L
Sbjct: 150 EDEVSKAVKRIFDKLAELD 168
>gi|195044570|ref|XP_001991843.1| GH11849 [Drosophila grimshawi]
gi|193901601|gb|EDW00468.1| GH11849 [Drosophila grimshawi]
Length = 689
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 112 KILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKIL 167
K Q PE+ N+V + SV C L L +I S V Y N G++ MK+
Sbjct: 200 KGTDQDAEPEL-DIVINNVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKLR 253
Query: 168 NPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVR 227
P TT + SG++ GA E K+A+R++A+ L +LG P +Q F+I N++ TC +
Sbjct: 254 RPYTTASIWSSGRITCTGATSELQAKIAARRYARCLGKLGFPTHFQHFRIVNVLGTCSMP 313
Query: 228 FPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +K+ H +SYEPEL PG+ Y+M +P+ L IF G I
Sbjct: 314 WAIKIVNFSERHRDNASYEPELHPGVTYKMREPKATLKIFSTGSI 358
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L L +I S V Y N G++ MK+ P TT + SG++
Sbjct: 216 NVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKLRRPYTTASIWSSGRITCT 270
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YS 152
GA E K+A+R++A+ L +LG P F FR N++GT S+ + + + R R +
Sbjct: 271 GATSELQAKIAARRYARCLGKLGFP-THFQHFRIVNVLGTCSMPWAIKIVNFSERHRDNA 329
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P G+ K+ P+ T F +G + +
Sbjct: 330 SYEPELHPGVTYKMREPKATLKIFSTGSITVTA 362
>gi|389848878|ref|YP_006351115.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614622|ref|ZP_21663769.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388246184|gb|AFK21128.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445753956|gb|EMA05371.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V + V LDL++++ + ++Y+P F GL+ + NP+ CL F+SGK++ GA
Sbjct: 13 QNVVASTEVTLELDLDRLSLDMSGTDYDPENFPGLVYRTENPKAACLVFRSGKIVCTGAD 72
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 245
D A L LG P+ + NIV + D+ + L+AL + + Y
Sbjct: 73 SVEDVNTAIETLFDDLDDLGIPVPDDPNTTVQNIVSSADLGAALNLNALAIGLGLEDVEY 132
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ P VV+L+F +G+I
Sbjct: 133 EPEQFPGLVYRLDDPNVVVLMFGSGKI 159
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL++++ + ++Y+P F GL+ + NP+ CL F+SGK++ GA
Sbjct: 14 NVVASTEVTLELDLDRLSLDMSGTDYDPENFPGLVYRTENPKAACLVFRSGKIVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A L LG P+ +N+V + +G L+LN I + EY
Sbjct: 74 VEDVNTAIETLFDDLDDLGIPVPDDPNTTVQNIVSSADLGAALNLNALAIGLGLEDVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ +P L F SGK++I GA+ D + A +++LG
Sbjct: 134 PEQFPGLVYRLDDPNVVVLMFGSGKIVITGAEAVVDAESALETVDGDVRELG 185
>gi|195114322|ref|XP_002001716.1| GI15474 [Drosophila mojavensis]
gi|193912291|gb|EDW11158.1| GI15474 [Drosophila mojavensis]
Length = 442
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 9/157 (5%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLA 175
P + N+V + SV C L L +I S V Y N G++ M++ P TT
Sbjct: 86 PSELDIVINNVVCSFSVRCHLKLREIALHGSNVEYRREN-----GMVTMRLRRPYTTASI 140
Query: 176 FQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL 235
+ SG++ GA E K+A+R++A+ L +LG P+++Q F+I N++ TC + +P+++
Sbjct: 141 WSSGRITCTGAISESQAKVAARRYARSLSKLGFPVRFQQFRIVNVLGTCSMPWPIRIVNF 200
Query: 236 HHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H + + YEPEL PG+ ++M P+ L IF G I
Sbjct: 201 SERHRESACYEPELHPGVTFKMQDPKATLKIFSTGSI 237
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 13/154 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L L +I S V Y N G++ M++ P TT + SG++
Sbjct: 95 NVVCSFSVRCHLKLREIALHGSNVEYRREN-----GMVTMRLRRPYTTASIWSSGRITCT 149
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSE 153
GA E K+A+R++A+ L +LG P + F FR N++GT S+ P+ + + R R S
Sbjct: 150 GAISESQAKVAARRYARSLSKLGFP-VRFQQFRIVNVLGTCSMPWPIRIVNFSERHRESA 208
Query: 154 -YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P G+ K+ +P+ T F +G + + A
Sbjct: 209 CYEPELHPGVTFKMQDPKATLKIFSTGSITVTAA 242
>gi|307352931|ref|YP_003893982.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
gi|307156164|gb|ADN35544.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
Length = 186
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL IN +++ +EYN +F G+++++ P+ L F SGK+++ GAK
Sbjct: 13 NIVASAKVAKELDLQMINEKIKDAEYNKKRFPGVVLRMQEPKIAALVFGSGKVVLTGAKS 72
Query: 100 EHDCKLASRKFAKILKQ--LGHPEIIFFFFRNMVGTISVGCPLDLNQINS--RVRYSEYN 155
L++ L P+ + + +N+V + +G P++LN+I + EY
Sbjct: 73 IDSLSKGLDILGDKLRELKLDIPKNLEYKVQNIVTSADLGTPINLNKIAVGFNLERIEYE 132
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P+ L F SGKL+I G K D K A +K L LG
Sbjct: 133 PEQFPGLVYRLDEPKVVVLLFGSGKLIITGGKQPEDAKKAVQKILSDLSNLG 184
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDL IN +++ +EYN +F G+++++ P+ L F SGK+++ GA
Sbjct: 11 IENIVASAKVAKELDLQMINEKIKDAEYNKKRFPGVVLRMQEPKIAALVFGSGKVVLTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K L++L I K +K+ NIV + D+ P+ L+ + + +
Sbjct: 71 KSIDSLSKGLDILGDKLRELKLDIPKNLEYKVQNIVTSADLGTPINLNKIAVGFNLERIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+L+F +G++
Sbjct: 131 YEPEQFPGLVYRLDEPKVVVLLFGSGKL 158
>gi|194769912|ref|XP_001967045.1| GF21727 [Drosophila ananassae]
gi|190622840|gb|EDV38364.1| GF21727 [Drosophila ananassae]
Length = 1683
Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 9/148 (6%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 184
N+V + SV C L L I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1247 NVVCSFSVRCHLKLRDIALNGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1301
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
GA E K+A+R++A+ L +LG P ++Q F+I N++ TC + + +K+ H + +S
Sbjct: 1302 GATSEPMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1361
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPEL PG+ Y+M P+ L IF G I
Sbjct: 1362 YEPELHPGVTYKMRDPKATLKIFSTGSI 1389
Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 17/156 (10%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L L I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1247 NVVCSFSVRCHLKLRDIALNGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1301
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSE 153
GA E K+A+R++A+ L +LG P F FR N++GT S+ P + +N R+ E
Sbjct: 1302 GATSEPMAKVAARRYARCLGKLGFP-TRFQNFRIVNVLGTCSM--PWAIKIVNFSERHRE 1358
Query: 154 ---YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P G+ K+ +P+ T F +G + + A
Sbjct: 1359 NASYEPELHPGVTYKMRDPKATLKIFSTGSITVTAA 1394
>gi|45357820|ref|NP_987377.1| transcription factor [Methanococcus maripaludis S2]
gi|340623439|ref|YP_004741892.1| transcription factor [Methanococcus maripaludis X1]
gi|56749680|sp|Q6M0L3.1|TBP_METMP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|45047380|emb|CAF29813.1| TATA-binding protein (TBP) [Methanococcus maripaludis S2]
gi|339903707|gb|AEK19149.1| transcription factor [Methanococcus maripaludis X1]
Length = 181
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + +EY P +F GL+ ++ P+ L F+SGKL GA+
Sbjct: 8 VNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGAR 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ D +A K K LK+ G +PE+ +NMV T +G +L+ I S + +E
Sbjct: 68 CKEDAVIAINKIVKELKEAGMDLIDNPEV---KVQNMVATTELGMEPNLDDI-STLECTE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPI 210
Y P +F GL+ ++ P+ L F SGK++I G K D +A K +K LK+L +
Sbjct: 124 YEPEQFPGLVYRLSEPKVVVLIFGSGKVVITGLKVIEDAYIAFDKISKTLKELEEEL 180
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL + +EY P +F GL+ ++ P+ L F+S
Sbjct: 2 EPEIKVV---NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GKL GA+ + D +A K K LK+ G I K+ N+V T ++ LD +
Sbjct: 59 GKLNCTGARCKEDAVIAINKIVKELKEAGMDLIDNPEVKVQNMVATTELGMEPNLDDIST 118
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + YEPE FPGL+YR+ +P+VV+LIF +G++
Sbjct: 119 LEC--TEYEPEQFPGLVYRLSEPKVVVLIFGSGKV 151
>gi|15897830|ref|NP_342435.1| transcription factor [Sulfolobus solfataricus P2]
gi|284175636|ref|ZP_06389605.1| transcription factor [Sulfolobus solfataricus 98/2]
gi|384434381|ref|YP_005643739.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
gi|13814131|gb|AAK41225.1| TATA box binding protein, hypothetical (tfIID) [Sulfolobus
solfataricus P2]
gi|261602535|gb|ACX92138.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
Length = 181
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Query: 131 VGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 190
+ T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 191 DCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ A ++ K LK+ G IK G +I NIV + ++ V LD + + YEP
Sbjct: 61 ELIKAVKRIIKTLKKYG--IKIVGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-NMYEP 117
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM PRVVLLIF +G++
Sbjct: 118 EQFPGLIFRMDDPRVVLLIFSSGKM 142
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 42 VGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 101
+ T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 102 DCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
+ A ++ K LK+ +G P+I +N+V + ++ ++L++ + + Y P
Sbjct: 61 ELIKAVKRIIKTLKKYGIKIVGKPKI---QIQNIVASANLHVNVNLDKAAFLLENNMYEP 117
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F GLI ++ +PR L F SGK++I GAK E + A ++ L +L
Sbjct: 118 EQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAELD 168
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I GAK
Sbjct: 90 NIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKR 149
Query: 100 EHDCKLASRKFAKILKQLG 118
E + A ++ L +L
Sbjct: 150 EDEVSKAVKRIFDKLAELD 168
>gi|401407154|ref|XP_003883026.1| TATA-binding protein, related [Neospora caninum Liverpool]
gi|325117442|emb|CBZ52994.1| TATA-binding protein, related [Neospora caninum Liverpool]
Length = 538
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 32/229 (13%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
LDL + R++EYNP K + I+++ NP+ T L F+SG+L+I GA+ E + + A+R
Sbjct: 308 LDLRHLAISCRFAEYNPRKINACIVRLRNPKCTVLVFRSGRLIITGARSETEAERAARLT 367
Query: 111 AKILKQLGHPEIIFFFFRNMVGTI-SVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILN 168
AK+L + + ++ S PL L S+ R S + G +
Sbjct: 368 AKMLT------FAYCGSSDKDASLHSPSAPLRLASGPSKDDRVSSDESRRRSGSFGED-- 419
Query: 169 PRTTCLAFQSGK--LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDV 226
C A QS + L+++ KL R F K+ N+V + D
Sbjct: 420 -SAACTAVQSSESSLVLVEPDRRSKQKLCLRDF----------------KVENVVASADC 462
Query: 227 RFPVKLDALHHVHSQFSSYEPELFPGLIYR---MVKPRVVLLIFVNGRI 272
PV+L+ L H +FSSYEPELF GL+YR + VLL+FV+G++
Sbjct: 463 GVPVRLEGLAFEHKEFSSYEPELFSGLVYRYNPTASLKAVLLVFVSGKV 511
>gi|448568567|ref|ZP_21638101.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445725917|gb|ELZ77535.1| transcription factor [Haloferax lucentense DSM 14919]
Length = 188
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A +LG PI + NIV + D+ + L+AL + +
Sbjct: 72 DSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKI 159
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++ GA
Sbjct: 14 NVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A +LG P+ +N+V + +G L+LN I + EY
Sbjct: 74 VDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GAK D + A +++LG
Sbjct: 134 PEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVGDAEAALETVDDDVRELG 185
>gi|292494314|ref|YP_003533457.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|448289408|ref|ZP_21480579.1| transcription factor [Haloferax volcanii DS2]
gi|291369097|gb|ADE01327.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|445582489|gb|ELY36830.1| transcription factor [Haloferax volcanii DS2]
Length = 188
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A +LG PI + NIV + D+ + L+AL + +
Sbjct: 72 DSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKI 159
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++ GA
Sbjct: 14 NVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A +LG P+ +N+V + +G L+LN I + EY
Sbjct: 74 VDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I G K D + A +++LG
Sbjct: 134 PEQFPGLVYRLDEPSVVVLMFGSGKIVITGVKRVGDAETALETVDDDVRELG 185
>gi|57640067|ref|YP_182545.1| transcription factor [Thermococcus kodakarensis KOD1]
gi|2833446|sp|Q52366.1|TBP_PYRKO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2129420|pir||JC4514 TATA-binding protein - Pyrococcus sp
gi|1405351|dbj|BAA08743.1| TATA binding protein [Pyrococcus sp.]
gi|57158391|dbj|BAD84321.1| transcription initiation factor TFIID [Thermococcus kodakarensis
KOD1]
Length = 190
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFTDLNLEKVIEICPSSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D K A K ++LK++G P+I +NMV + +G +L+ + + EY
Sbjct: 73 VDDIKRAVYKLIEMLKKIGAKFTREPQI---DIQNMVFSGDIGMEFNLDAVALILPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ PR L F SGK++ GAK E D A +K + L++ G
Sbjct: 130 EPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEQDAWEAVKKLLRELEKYG 182
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 12 ENIVASVDLFTDLNLEKVIEICPSSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D K A K ++LK++G + I N+V + D+ LDA+ + YE
Sbjct: 72 SVDDIKRAVYKLIEMLKKIGAKFTREPQIDIQNMVFSGDIGMEFNLDAVALILPN-CEYE 130
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 131 PEQFPGVIYRVKEPRAVILLFSSGKI 156
>gi|448540133|ref|ZP_21623370.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551731|ref|ZP_21629465.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448553994|ref|ZP_21630784.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445710007|gb|ELZ61830.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710121|gb|ELZ61943.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445719179|gb|ELZ70861.1| transcription factor [Haloferax sp. ATCC BAA-644]
Length = 188
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A +LG PI + NIV + D+ + L+AL + +
Sbjct: 72 DSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKI 159
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++ GA
Sbjct: 14 NVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A +LG P+ +N+V + +G L+LN I + EY
Sbjct: 74 VDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEAVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GAK D + A +++LG
Sbjct: 134 PEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVSDAETALETVDDDVRELG 185
>gi|433425962|ref|ZP_20406798.1| transcription factor [Haloferax sp. BAB2207]
gi|448594544|ref|ZP_21652891.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|432197431|gb|ELK53812.1| transcription factor [Haloferax sp. BAB2207]
gi|445744180|gb|ELZ95659.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 188
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A +LG PI + NIV + D+ + L+AL + +
Sbjct: 72 DSVDDVSTAIETLFDEFTELGIPIPDDPDVTVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKI 159
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++ GA
Sbjct: 14 NVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A +LG P+ +N+V + +G L+LN I + EY
Sbjct: 74 VDDVSTAIETLFDEFTELGIPIPDDPDVTVQNIVSSADLGAALNLNALAIGLGLEAVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GAK D + A +++LG
Sbjct: 134 PEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVGDAEAALETVDDDVRELG 185
>gi|118575298|ref|YP_875041.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118193819|gb|ABK76737.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN + + +EYNP +F GL+ ++ +P+T L F++GK++ GAK
Sbjct: 12 NVVASASVDQKIDLNDVTKKFPDTEYNPEQFPGLVFRLTSPKTATLIFRTGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
E A R + L++ G + +N+V I++G + L + + S Y P
Sbjct: 72 EDMAVKAVRTVVQKLRKSGIKIKKDAVVVVQNIVAAINLGGKIHLEKAARVLPRSMYEPE 131
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
+F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 132 QFPGLIHRMLDPKTVILLFASGKLVCTGAKKESD 165
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DLN + + +EYNP +F GL+ ++ +P+T L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLNDVTKKFPDTEYNPEQFPGLVFRLTSPKTATLIFRTGKMVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E A R + L++ G IK + NIV ++ + L+ V + S YE
Sbjct: 71 SEDMAVKAVRTVVQKLRKSGIKIKKDAVVVVQNIVAAINLGGKIHLEKAARVLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKL 155
>gi|374628586|ref|ZP_09700971.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
gi|373906699|gb|EHQ34803.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
Length = 186
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL IN ++ +EYN +F G+++++ +P+ L F SGK+++ GAK
Sbjct: 13 NIVASAKVADELDLQMINEEIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGAKS 72
Query: 100 EHDCKLASRKFAKILK--QLGHPEIIFFFFRNMVGTISVGCPLDLNQINS--RVRYSEYN 155
+ + L+ +L P + + +N+V + +G P++LN+I + EY
Sbjct: 73 IDNLSRGLEILGEKLRALKLDIPTNLEYKVQNIVTSADLGSPINLNKIAVGFNLDRIEYE 132
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P+ L F SGKL+I G K D K A K L LG
Sbjct: 133 PEQFPGLVYRLEEPKVVVLLFGSGKLIITGGKETKDAKAAVIKIMSDLSNLG 184
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDL IN ++ +EYN +F G+++++ +P+ L F SGK+++ GA
Sbjct: 11 IENIVASAKVADELDLQMINEEIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K + + L+ L I +K+ NIV + D+ P+ L+ + +
Sbjct: 71 KSIDNLSRGLEILGEKLRALKLDIPTNLEYKVQNIVTSADLGSPINLNKIAVGFNLDRIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+L+F +G++
Sbjct: 131 YEPEQFPGLVYRLEEPKVVVLLFGSGKL 158
>gi|159905083|ref|YP_001548745.1| transcription factor [Methanococcus maripaludis C6]
gi|226703561|sp|A9A840.1|TBP_METM6 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|159886576|gb|ABX01513.1| TATA-box binding family protein [Methanococcus maripaludis C6]
Length = 181
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + +EY P +F GL+ ++ P+ L F+SGKL GAK
Sbjct: 8 VNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ D +A K K LK+ G +PE+ +NMV T +G +L+ I S + +E
Sbjct: 68 CKEDAVIAIHKIIKELKEAGMDLIDNPEV---NVQNMVATTELGMEPNLDDI-STLECTE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPI 210
Y P +F GL+ ++ +P+ L F SGK++I G K D A K +K LK+L +
Sbjct: 124 YEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKVIEDAYKAYDKISKTLKELEEEL 180
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL + +EY P +F GL+ ++ P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GKL GAK + D +A K K LK+ G I + N+V T ++ LD +
Sbjct: 59 GKLNCTGAKCKEDAVIAIHKIIKELKEAGMDLIDNPEVNVQNMVATTELGMEPNLDDIST 118
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 119 L--ECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKV 151
>gi|375083218|ref|ZP_09730248.1| transcription factor [Thermococcus litoralis DSM 5473]
gi|374742172|gb|EHR78580.1| transcription factor [Thermococcus litoralis DSM 5473]
Length = 188
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ +S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K ++L ++G PEI +NMV + + +L+ + + EY
Sbjct: 73 VEDIQAAVSKLVEMLSKIGTKFTRAPEI---DIQNMVFSGDLKMEFNLDAVALVLPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ +P+ L F SGK++ GAK EHD A +K L++ G
Sbjct: 130 EPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSEHDAWEAVKKLLHELEKYG 182
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + LDL ++ +S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 12 ENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D + A K ++L ++G + I N+V + D++ LDA+ V YE
Sbjct: 72 SVEDIQAAVSKLVEMLSKIGTKFTRAPEIDIQNMVFSGDLKMEFNLDAVALVLPN-CEYE 130
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPG+IYR+ P+ V+L+F +G+I
Sbjct: 131 PEQFPGVIYRVKDPKAVILLFSSGKI 156
>gi|397780477|ref|YP_006544950.1| TATA-box-binding protein [Methanoculleus bourgensis MS2]
gi|396938979|emb|CCJ36234.1| TATA-box-binding protein AltName: Full=TATA-box factor
[Methanoculleus bourgensis MS2]
Length = 237
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDLN + S+++ +EYN +F G+++++ +P+ L F SGK+++ GAK
Sbjct: 64 NIVASAKVTDSLDLNSLASQLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGAKS 123
Query: 100 EHDCKLASRKFAKILKQL--GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS--EYN 155
+ + L+ L PE + + +N+V + +G P++LN+I EY
Sbjct: 124 IDNLSRGLQILGDQLRALNIDIPENLTYKVQNIVTSADLGTPINLNKIAVGFNLDKIEYE 183
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ +P+ L F SGKL+I G K D + A ++ L LG
Sbjct: 184 PEQFPGLVYRLDDPKVVVLLFGSGKLIITGGKQPEDARRAVQRILSELSSLG 235
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDLN + S+++ +EYN +F G+++++ +P+ L F SGK+++ GA
Sbjct: 62 IENIVASAKVTDSLDLNSLASQLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGA 121
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K + + L+ L I +K+ NIV + D+ P+ L+ + +
Sbjct: 122 KSIDNLSRGLQILGDQLRALNIDIPENLTYKVQNIVTSADLGTPINLNKIAVGFNLDKIE 181
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 182 YEPEQFPGLVYRLDDPKVVVLLFGSGKL 209
>gi|150403180|ref|YP_001330474.1| transcription factor [Methanococcus maripaludis C7]
gi|166227820|sp|A6VIP7.1|TBP_METM7 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150034210|gb|ABR66323.1| TATA-box binding [Methanococcus maripaludis C7]
Length = 181
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 9/175 (5%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 8 VNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAK 67
Query: 99 HEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
+ D +A K K L++ G +PE+ +NMV T +G +L+ I S + +E
Sbjct: 68 SKDDAVIAINKIIKELQEAGMDIIDNPEV---NVQNMVATTELGMEPNLDDI-STLECTE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
Y P +F GL+ ++ +P+ L F SGK++I G K D +A K LK+L
Sbjct: 124 YEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKRIDDAYVAFNKILTTLKELEE 178
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
PEI N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+S
Sbjct: 2 EPEIKIV---NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRS 58
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHH 237
GKL GAK + D +A K K L++ G I + N+V T ++ LD +
Sbjct: 59 GKLNCTGAKSKDDAVIAINKIIKELQEAGMDIIDNPEVNVQNMVATTELGMEPNLDDIST 118
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 119 LEC--TEYEPEQFPGLVYRLSDPKVVVLIFGSGKV 151
>gi|393796700|ref|ZP_10380064.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
Length = 187
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +V DLN I + +EY+P +F GL+ ++ NP+T L F++GK++ G+K
Sbjct: 11 VNVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTGSK 70
Query: 99 HEHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
E + A + + L++ G + +N+V +I++G + L + + S Y P
Sbjct: 71 SEEMARSAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEKAARTLPRSMYEP 130
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F GLI ++L+P+T L F SGKL+ GAK+E D + +L++ G
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLVCTGAKNESDVFRSVHNLHSLLEEKG 181
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + +V DLN I + +EY+P +F GL+ ++ NP+T L F++GK++ G+K
Sbjct: 12 NVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTGSKS 71
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E + A + + L++ G +K + NIV + ++ V L+ + S YEP
Sbjct: 72 EEMARSAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEKAARTLPR-SMYEP 130
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM+ P+ V+LIF +G++
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKL 155
>gi|195438615|ref|XP_002067228.1| GK16294 [Drosophila willistoni]
gi|194163313|gb|EDW78214.1| GK16294 [Drosophila willistoni]
Length = 1222
Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV C L L +I EY + +G++ MK+ +P TT + SG++ GA
Sbjct: 736 NVVCSFSVRCHLKLREIALHGANVEYR--RENGMVTMKLRHPYTTASIWSSGRITCTGAT 793
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E K+A+R++A+ L +LG P ++Q F+I N++ TC + + +K+ H +SYEP
Sbjct: 794 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYEP 853
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
EL PG+ Y+M +P+ L IF G I
Sbjct: 854 ELHPGVTYKMREPKATLKIFSTGSI 878
Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L L +I EY + +G++ MK+ +P TT + SG++ GA
Sbjct: 736 NVVCSFSVRCHLKLREIALHGANVEYR--RENGMVTMKLRHPYTTASIWSSGRITCTGAT 793
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYN 155
E K+A+R++A+ L +LG P F FR N++GT S+ + + + R R + Y
Sbjct: 794 SEIMAKVAARRYARCLGKLGFP-TRFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYE 852
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
P G+ K+ P+ T F +G + + A
Sbjct: 853 PELHPGVTYKMREPKATLKIFSTGSITVTAA 883
>gi|383852426|ref|XP_003701729.1| PREDICTED: TATA box-binding protein-like protein 1-like [Megachile
rotundata]
Length = 295
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 4/177 (2%)
Query: 98 KHEHDCKLASRKFAKILKQ-LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
K E D +L R+ + P + N+V + SV C L+L +I EY
Sbjct: 39 KEEQDERLFDRQIQPYVDTPEQEPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYR- 97
Query: 157 GKFHGLI-MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGF 215
+ G+I MK+ P TT + SGK+ GA E K+A+R+FA+ L++LG +++ +
Sbjct: 98 -RESGMITMKLRRPYTTASIWSSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNY 156
Query: 216 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
++ N++ TC + F +K+ + H + + YEPEL PG+ Y++ +P+ L IF G +
Sbjct: 157 RVVNVLGTCCMPFAIKITSFSLYHKENADYEPELHPGVTYKLKEPKATLKIFSTGSV 213
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L +I EY + G+I MK+ P TT + SGK+ GA
Sbjct: 71 NVVCSFSVRCHLNLREIALNGSNVEYR--RESGMITMKLRRPYTTASIWSSGKVTCTGAT 128
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEYN 155
E K+A+R+FA+ L++LG ++ F +R N++GT + + + + ++Y
Sbjct: 129 SEVQAKIAARRFARSLQKLGF-KVRFNNYRVVNVLGTCCMPFAIKITSFSLYHKENADYE 187
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ K+ P+ T F +G + +
Sbjct: 188 PELHPGVTYKLKEPKATLKIFSTGSVTVTA 217
>gi|14521176|ref|NP_126651.1| transcription factor [Pyrococcus abyssi GE5]
gi|13124586|sp|Q9V024.1|TBP_PYRAB RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|5458394|emb|CAB49882.1| TATA box binding protein TFIIB-BBRE complex, chain A [Pyrococcus
abyssi GE5]
gi|380741746|tpe|CCE70380.1| TPA: transcription factor [Pyrococcus abyssi GE5]
Length = 191
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
HD + A K + LK +G +NMV + +G +L+ + + EY P
Sbjct: 73 IHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPE 132
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F G+I ++ +PR L F SGK++ GAK E D A RK + L++ G
Sbjct: 133 QFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYG 182
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K HD + A K + LK +G K I N+V + D+ LD + Y
Sbjct: 71 KSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN-CEY 129
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPG+IYR+ PR V+L+F +G+I
Sbjct: 130 EPEQFPGVIYRVKDPRAVILLFSSGKI 156
>gi|448577353|ref|ZP_21642983.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445727998|gb|ELZ79607.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 12/153 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +VG LDL ++ V +E+NP F GL+ + +PR L F+SGK++ GA
Sbjct: 12 IQNVVASSAVGLELDLESLSDDVPGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDA------LHHVH 239
+ A + + L LG PI + + NIV + D+ + L+A L HV
Sbjct: 72 SSVDEVNQALEQVFEELGSLGIPIDGREEATVQNIVSSADLGTTLNLNALAIGLGLEHVE 131
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 -----YEPEQFPGLVYRIDEPNVVVLLFGSGKI 159
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +VG LDL ++ V +E+NP F GL+ + +PR L F+SGK++ GA
Sbjct: 14 NVVASSAVGLELDLESLSDDVPGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCTGASS 73
Query: 100 EHDCKLASRKFAKILKQLGHP-----EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
+ A + + L LG P E +N+V + +G L+LN I + +
Sbjct: 74 VDEVNQALEQVFEELGSLGIPIDGREEAT---VQNIVSSADLGTTLNLNALAIGLGLEHV 130
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P L F SGK++I GAK + A + ++ LG
Sbjct: 131 EYEPEQFPGLVYRIDEPNVVVLLFGSGKIVITGAKKVEYAREAINVVSDEIESLG 185
>gi|390938384|ref|YP_006402122.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
fermentans DSM 16532]
gi|390191491|gb|AFL66547.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
fermentans DSM 16532]
Length = 194
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++
Sbjct: 10 YRVENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVT 69
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQ 241
G K A +K K + G + G +I NIV D+ V L+ + H +
Sbjct: 70 GTKSTQQLVEAVKKIIKTFVKNG--VNVHGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLE 126
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
S YEPE FPGLI+RM PRVVLLIF +G++
Sbjct: 127 DSMYEPEQFPGLIHRMRDPRVVLLIFSSGKM 157
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++ G K
Sbjct: 14 NIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGTKS 73
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
A +K K + G P + +N+V + ++L + + S Y
Sbjct: 74 TQQLVEAVKKIIKTFVKNGVNVHGRPRV---QIQNIVAGGDIHAYVNLEKAAYHLEDSMY 130
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++I GAK E + + A A+ L + G
Sbjct: 131 EPEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEEVEVERAVNNIARQLYKAG 183
>gi|218883586|ref|YP_002427968.1| transcription factor [Desulfurococcus kamchatkensis 1221n]
gi|218765202|gb|ACL10601.1| transcription factor - TATA-box-binding protein [Desulfurococcus
kamchatkensis 1221n]
Length = 194
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
+ N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++
Sbjct: 10 YRVENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVT 69
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQ 241
G K A +K K + G + G +I NIV D+ V L+ + H +
Sbjct: 70 GTKSTQQLVEAVKKIIKTFVKNG--VNVHGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLE 126
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
S YEPE FPGLI+RM PRVVLLIF +G++
Sbjct: 127 DSMYEPEQFPGLIHRMRDPRVVLLIFSSGKM 157
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++ G K
Sbjct: 14 NIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGTKS 73
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
A +K K + G P + +N+V + ++L + + S Y
Sbjct: 74 TQQLVEAVKKIIKTFVKNGVNVHGRPRV---QIQNIVAGGDIHAYVNLEKAAYHLEDSMY 130
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ +PR L F SGK++I GAK E + + A A+ L + G
Sbjct: 131 EPEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEEVEVERAVNNIARQLYKAG 183
>gi|329766561|ref|ZP_08258104.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796800|ref|ZP_10380164.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329136816|gb|EGG41109.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 187
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 8/158 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 12 NVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E +A + ++++L +I +N+V I++G + L + + S Y
Sbjct: 72 ED---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
P +F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDV 166
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DLN+I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEDMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKL 155
>gi|158285534|ref|XP_308361.4| AGAP007517-PA [Anopheles gambiae str. PEST]
gi|157020038|gb|EAA04678.5| AGAP007517-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 116 QLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCL 174
Q PEI N+V + SV C L+L+ I E+ + HG++ MK+ P TT
Sbjct: 246 QEEQPEI-DIVINNVVCSFSVRCHLNLHDIARHGHNVEFR--REHGMVTMKLRRPYTTAS 302
Query: 175 AFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA 234
+ SGK+ GA EH K+A+R++++ L++LG ++++ F+I N++ TC + F + +
Sbjct: 303 IWSSGKITCTGATSEHQAKIAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPFGIMIVN 362
Query: 235 LHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + +SYEPEL PG+ Y++ P+ L IF G I
Sbjct: 363 FSEKYKKDASYEPELHPGVTYKLYSPKATLKIFSTGSI 400
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L+ I E+ + HG++ MK+ P TT + SGK+ GA
Sbjct: 258 NVVCSFSVRCHLNLHDIARHGHNVEFR--REHGMVTMKLRRPYTTASIWSSGKITCTGAT 315
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRY---SE 153
EH K+A+R++++ L++LG + F FR N++GT S+ P + +N +Y +
Sbjct: 316 SEHQAKIAARRYSRCLQKLGF-NVRFRNFRIVNVLGTCSM--PFGIMIVNFSEKYKKDAS 372
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P G+ K+ +P+ T F +G + + A
Sbjct: 373 YEPELHPGVTYKLYSPKATLKIFSTGSITVTAA 405
>gi|380016952|ref|XP_003692431.1| PREDICTED: TATA box-binding protein-like protein 1-like [Apis
florea]
Length = 304
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 9/158 (5%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCL 174
P + N+V + SV C L+L +I S V Y N G+I MK+ P TT
Sbjct: 56 EPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTAS 110
Query: 175 AFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA 234
+ SGK+ GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ +
Sbjct: 111 IWSSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITS 170
Query: 235 LHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H + + YEPEL PG+ Y++ +P+ L IF G +
Sbjct: 171 FSSCHKENADYEPELHPGVTYKLKEPKATLKIFSTGSV 208
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 66 NVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTCT 120
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYS 152
GA E K+A+R+FA+ L++LG ++ F +R N++GT + + + +S +
Sbjct: 121 GATSEVQAKIAARRFARSLQKLGF-KVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENA 179
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+Y P G+ K+ P+ T F +G + +
Sbjct: 180 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVTA 212
>gi|198471801|ref|XP_001355729.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
gi|198146086|gb|EAL32788.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
Length = 1037
Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV C L L I R EY + +G++ MK+ P TT + SG++ GA
Sbjct: 556 NVVCSFSVRCHLKLRDIALRGCNVEYR--RENGMVTMKLRRPYTTASIWSSGRITCTGAT 613
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E K+A+R++A+ L +LG P ++Q F+I N++ TC + + +K+ H +SYEP
Sbjct: 614 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYEP 673
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
EL PG+ Y+M P+ L IF G I
Sbjct: 674 ELHPGVTYKMKMPKATLKIFSTGSI 698
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L L I R EY + +G++ MK+ P TT + SG++ GA
Sbjct: 556 NVVCSFSVRCHLKLRDIALRGCNVEYR--RENGMVTMKLRRPYTTASIWSSGRITCTGAT 613
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYN 155
E K+A+R++A+ L +LG P F FR N++GT S+ + + + + R + Y
Sbjct: 614 SEIMAKVAARRYARCLGKLGFP-TRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYE 672
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
P G+ K+ P+ T F +G + + A
Sbjct: 673 PELHPGVTYKMKMPKATLKIFSTGSITVTAA 703
>gi|195164313|ref|XP_002022993.1| GL16412 [Drosophila persimilis]
gi|194105055|gb|EDW27098.1| GL16412 [Drosophila persimilis]
Length = 987
Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV C L L I R EY + +G++ MK+ P TT + SG++ GA
Sbjct: 505 NVVCSFSVRCHLKLRDIALRGCNVEYR--RENGMVTMKLRRPYTTASIWSSGRITCTGAT 562
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E K+A+R++A+ L +LG P ++Q F+I N++ TC + + +K+ H +SYEP
Sbjct: 563 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYEP 622
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
EL PG+ Y+M P+ L IF G I
Sbjct: 623 ELHPGVTYKMKMPKATLKIFSTGSI 647
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L L I R EY + +G++ MK+ P TT + SG++ GA
Sbjct: 505 NVVCSFSVRCHLKLRDIALRGCNVEYR--RENGMVTMKLRRPYTTASIWSSGRITCTGAT 562
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYN 155
E K+A+R++A+ L +LG P F FR N++GT S+ + + + + R + Y
Sbjct: 563 SEIMAKVAARRYARCLGKLGFP-TRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYE 621
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
P G+ K+ P+ T F +G + + A
Sbjct: 622 PELHPGVTYKMKMPKATLKIFSTGSITVTAA 652
>gi|242398131|ref|YP_002993555.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
gi|259517220|sp|C6A0R1.1|TBP_THESM RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|242264524|gb|ACS89206.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
Length = 185
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 92/173 (53%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ +S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 10 NIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K ++L ++G PEI +NMV + + +L+ + + EY
Sbjct: 70 VDDIQAAVSKLVEMLSKIGTKFGRAPEI---DIQNMVFSGDLKMEFNLDAVALVLPNCEY 126
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ +P+ L F SGK++ GAK EHD A +K L + G
Sbjct: 127 EPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSEHDAWEAVKKLLHELDKYG 179
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + LDL ++ +S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 9 ENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTGAK 68
Query: 188 HEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D + A K ++L ++G + I N+V + D++ LDA+ V YE
Sbjct: 69 SVDDIQAAVSKLVEMLSKIGTKFGRAPEIDIQNMVFSGDLKMEFNLDAVALVLPN-CEYE 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPG+IYR+ P+ V+L+F +G+I
Sbjct: 128 PEQFPGVIYRVKDPKAVILLFSSGKI 153
>gi|340345517|ref|ZP_08668649.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520658|gb|EGP94381.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 8/158 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 12 NVVASASVEQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E +A + ++++L +I +N+V I++G + L + + S Y
Sbjct: 72 ED---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
P +F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDV 166
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DLN+I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 11 ENVVASASVEQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEDMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKL 155
>gi|329764975|ref|ZP_08256562.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138512|gb|EGG42761.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
Length = 187
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + +V DLN I + +EY+P +F GL+ ++ NP+T L F++GK++ G+K
Sbjct: 11 VNVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTGSK 70
Query: 99 HEHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
E + A + + L++ G + +N+V +I++G + L + + S Y P
Sbjct: 71 SEEMARNAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEKAARTLPRSMYEP 130
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F GLI ++L+P+T L F SGKL+ GAK+E D + +L++ G
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLVCTGAKNESDVFRSVHNLHSLLEEKG 181
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + +V DLN I + +EY+P +F GL+ ++ NP+T L F++GK++ G+K
Sbjct: 12 NVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTGSKS 71
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E + A + + L++ G +K + NIV + ++ V L+ + S YEP
Sbjct: 72 EEMARNAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEKAARTLPR-SMYEP 130
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM+ P+ V+LIF +G++
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKL 155
>gi|340712494|ref|XP_003394794.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
terrestris]
Length = 290
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 9/158 (5%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCL 174
P + N+V + SV C L+L +I S V Y N G+I MK+ P TT
Sbjct: 56 EPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTAS 110
Query: 175 AFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA 234
+ SGK+ GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ +
Sbjct: 111 IWSSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITS 170
Query: 235 LHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H + + YEPEL PG+ Y++ +P+ L IF G +
Sbjct: 171 FSSCHKENADYEPELHPGVTYKLKEPKATLKIFSTGSV 208
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 66 NVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTCT 120
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYS 152
GA E K+A+R+FA+ L++LG ++ F +R N++GT + + + +S +
Sbjct: 121 GATSEVQAKIAARRFARSLQKLGF-KVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENA 179
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+Y P G+ K+ P+ T F +G + +
Sbjct: 180 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVTA 212
>gi|328791980|ref|XP_396371.4| PREDICTED: TATA box binding protein-related factor 2 isoform 1
[Apis mellifera]
Length = 306
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 9/158 (5%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCL 174
P + N+V + SV C L+L +I S V Y N G+I MK+ P TT
Sbjct: 56 EPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTAS 110
Query: 175 AFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA 234
+ SGK+ GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ +
Sbjct: 111 IWSSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITS 170
Query: 235 LHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H + + YEPEL PG+ Y++ +P+ L IF G +
Sbjct: 171 FSSCHKENADYEPELHPGVTYKLKEPKATLKIFSTGSV 208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 66 NVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTCT 120
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYS 152
GA E K+A+R+FA+ L++LG ++ F +R N++GT + + + +S +
Sbjct: 121 GATSEVQAKIAARRFARSLQKLGF-KVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENA 179
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+Y P G+ K+ P+ T F +G + +
Sbjct: 180 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVTA 212
>gi|350399828|ref|XP_003485652.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
impatiens]
Length = 290
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 9/158 (5%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCL 174
P + N+V + SV C L+L +I S V Y N G+I MK+ P TT
Sbjct: 56 EPRELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTAS 110
Query: 175 AFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA 234
+ SGK+ GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ +
Sbjct: 111 IWSSGKVTCTGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITS 170
Query: 235 LHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H + + YEPEL PG+ Y++ +P+ L IF G +
Sbjct: 171 FSSCHKENADYEPELHPGVTYKLKEPKATLKIFSTGSV 208
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 66 NVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTCT 120
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYS 152
GA E K+A+R+FA+ L++LG ++ F +R N++GT + + + +S +
Sbjct: 121 GATSEVQAKIAARRFARSLQKLGF-KVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENA 179
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+Y P G+ K+ P+ T F +G + +
Sbjct: 180 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVTA 212
>gi|389852335|ref|YP_006354569.1| transcription factor (TATA-box-binding protein) [Pyrococcus sp.
ST04]
gi|388249641|gb|AFK22494.1| transcription factor (TATA-box-binding protein) [Pyrococcus sp.
ST04]
Length = 191
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K + LK +G P+I +NMV + +G +L+ + + EY
Sbjct: 73 VQDIERAVAKLVQKLKGIGVKFRRAPQI---DIQNMVFSGDIGREFNLDNVALTLPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ PR L F SGK++ GAK E D A RK + L++ G
Sbjct: 130 EPEQFPGVIYRVREPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYG 182
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ---GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
K D + A K + LK +G +K++ I N+V + D+ LD +
Sbjct: 71 KSVQDIERAVAKLVQKLKGIG--VKFRRAPQIDIQNMVFSGDIGREFNLDNVALTLPN-C 127
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 128 EYEPEQFPGVIYRVREPRAVILLFSSGKI 156
>gi|123395858|ref|XP_001300812.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881909|gb|EAX87882.1| hypothetical protein TVAG_285070 [Trichomonas vaginalis G3]
Length = 233
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 3/147 (2%)
Query: 129 NMVGTISVGC-PLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N++ C L+L I S +R +EY P + ++++I +P+ T L F +GK+ I+G +
Sbjct: 53 NVIALAQYSCNKLNLVSIASTIRNAEYKPKRIKAVVIRIRDPKATGLVFSNGKINIVGCR 112
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV--HSQFSSY 245
D K A+ KF K+L+Q+G+ +K I +IV T F + + + H F Y
Sbjct: 113 SVEDAKRAAHKFRKMLQQIGYDVKLVNITISSIVATIHTPFNIAIAQIASADGHKLFCQY 172
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
PE F GLIYR+ P+ +LIF +G I
Sbjct: 173 RPEKFAGLIYRLTDPQCTMLIFQSGSI 199
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 39 LNMVGTISVGC-PLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
+N++ C L+L I S +R +EY P + ++++I +P+ T L F +GK+ I+G
Sbjct: 52 VNVIALAQYSCNKLNLVSIASTIRNAEYKPKRIKAVVIRIRDPKATGLVFSNGKINIVGC 111
Query: 98 KHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRV---RYSE 153
+ D K A+ KF K+L+Q+G+ +++ ++V TI + + QI S + +
Sbjct: 112 RSVEDAKRAAHKFRKMLQQIGYDVKLVNITISSIVATIHTPFNIAIAQIASADGHKLFCQ 171
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
Y P KF GLI ++ +P+ T L FQSG ++L AK E D S +L++
Sbjct: 172 YRPEKFAGLIYRLTDPQCTMLIFQSGS-IVLTAKSEDDLTAGSNWIYPVLQKF 223
>gi|399578906|ref|ZP_10772650.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
gi|399235932|gb|EJN56872.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
Length = 189
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G ++L Q+ ++ ++YNP F G++ ++ +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGTEIELEQLAMDLQGADYNPENFPGIVYRLQDPKAATLIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
A ++ L+ LG PE+I +N+V + +G L+LN I +
Sbjct: 72 IEYVHAACQRVFDDLRTLGIDVDDDPEVI---VQNIVASADLGDSLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
EY P +F GL+ +I +P+ L F SGKL+I G K D K A + L +LG P
Sbjct: 129 EYEPEQFPGLVYRIDDPKVVALLFGSGKLVITGGKTPSDAKRAVTVIVERLTELGMP 185
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G ++L Q+ ++ ++YNP F G++ ++ +P+ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGTEIELEQLAMDLQGADYNPENFPGIVYRLQDPKAATLIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K A ++ L+ LG + + NIV + D+ + L+A+ + +
Sbjct: 70 KSIEYVHAACQRVFDDLRTLGIDVDDDPEVIVQNIVASADLGDSLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRIDDPKVVALLFGSGKL 157
>gi|410916287|ref|XP_003971618.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T + GC LDL+ I S+ + Y P K + M++ PR T + SGK++ +GA
Sbjct: 15 NVVATFTTGCRLDLHTIGSKGKNVIYKP-KQGTVTMQLRKPRITANIWASGKVICIGASS 73
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E D KL +R+ A+ L++LG + + FK+ N++ TC + F + L ++ ++YEPE
Sbjct: 74 EADAKLGARRIARCLQKLGFGVTFGTFKVVNVMATCSMPFKISLVDFTMMNRFRATYEPE 133
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
L P +Y M +P+ + + G +
Sbjct: 134 LHPAALYTMKEPKATIKAYATGSV 157
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T + GC LDL+ I S+ + Y P K + M++ PR T + SGK++ +GA
Sbjct: 15 NVVATFTTGCRLDLHTIGSKGKNVIYKP-KQGTVTMQLRKPRITANIWASGKVICIGASS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRY-SEYNP 156
E D KL +R+ A+ L++LG + F F+ N++ T S+ + L R+ + Y P
Sbjct: 74 EADAKLGARRIARCLQKLGF-GVTFGTFKVVNVMATCSMPFKISLVDFTMMNRFRATYEP 132
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+ + P+ T A+ +G + IL
Sbjct: 133 ELHPAALYTMKEPKATIKAYATGSVTILA 161
>gi|18977667|ref|NP_579024.1| transcription factor [Pyrococcus furiosus DSM 3638]
gi|397651790|ref|YP_006492371.1| transcription factor [Pyrococcus furiosus COM1]
gi|48429154|sp|P62000.1|TBP_PYRFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48429155|sp|P62001.1|TBP_PYRWO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1942573|pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein
gi|1942574|pdb|1PCZ|B Chain B, Structure Of Tata-Binding Protein
gi|498649|gb|AAA73447.1| TATA-binding protein [Pyrococcus woesei]
gi|1245168|gb|AAA93368.1| TATA-box binding protein [Pyrococcus furiosus]
gi|18893395|gb|AAL81419.1| transcription initiation factor TFIID (TATA-box factor) chain a
(TATA sequence-binding protein) (tbp) [Pyrococcus
furiosus DSM 3638]
gi|393189381|gb|AFN04079.1| transcription factor [Pyrococcus furiosus COM1]
Length = 191
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K A+ LK +G P+I +NMV + +G +L+ + + EY
Sbjct: 73 VQDIERAVAKLAQKLKSIGVKFKRAPQI---DVQNMVFSGDIGREFNLDVVALTLPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F G+I ++ P++ L F SGK++ GAK E D A RK + L + G
Sbjct: 130 EPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKYG 182
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D + A K A+ LK +G K + N+V + D+ LD + Y
Sbjct: 71 KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-CEY 129
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPG+IYR+ +P+ V+L+F +G+I
Sbjct: 130 EPEQFPGVIYRVKEPKSVILLFSSGKI 156
>gi|88601869|ref|YP_502047.1| transcription factor [Methanospirillum hungatei JF-1]
gi|88187331|gb|ABD40328.1| TATA binding protein of transcription factor TFIID
[Methanospirillum hungatei JF-1]
Length = 186
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 6/173 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + LDL QI S ++ +EYN +F G+++++ NP+ L F SGK+++ GAK
Sbjct: 13 NIVASAKISESLDLPQIASSIKDAEYNKKRFPGVVIRMQNPKIAALVFGSGKVVLTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGHPEI---IFFFFRNMVGTISVGCPLDLNQINS--RVRYSEY 154
+L+ L + EI + + +N+V + +G ++LN+I + EY
Sbjct: 73 VESLNKGLEILGDLLRSL-NIEIASELTYKIQNIVTSADLGSGINLNKIAVGFNLERIEY 131
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ +P+ L F SGKL+I G K D K A K LK LG
Sbjct: 132 EPEQFPGLVYRLEDPKVVVLLFGSGKLIITGGKEPEDAKKAVLKIVDDLKGLG 184
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + LDL QI S ++ +EYN +F G+++++ NP+ L F SGK+++ GA
Sbjct: 11 IENIVASAKISESLDLPQIASSIKDAEYNKKRFPGVVIRMQNPKIAALVFGSGKVVLTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K +L+ L I + +KI NIV + D+ + L+ + + +
Sbjct: 71 KSVESLNKGLEILGDLLRSLNIEIASELTYKIQNIVTSADLGSGINLNKIAVGFNLERIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 131 YEPEQFPGLVYRLEDPKVVVLLFGSGKL 158
>gi|19073311|gb|AAL84756.1|AF469636_1 TATA binding protein D [Halobacterium sp. GN101]
Length = 186
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G L L Q+ + + ++YNP +F G+I ++ +P +T L F SGK + GA
Sbjct: 10 IENVVASSTLGAELALEQLAADLPGADYNPEEFPGVIYRLDDPPSTTLIFDSGKAVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
+ D A + L++LG I + NIVC+ D+ P+ L+A+ + +
Sbjct: 70 QTVDDVHEALSIVVEDLRELGIDIAADPPVDVQNIVCSADLDQPLNLNAIAIGLGLEAIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV+L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVVLLFGSGKL 157
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G L L Q+ + + ++YNP +F G+I ++ +P +T L F SGK + GA+
Sbjct: 12 NVVASSTLGAELALEQLAADLPGADYNPEEFPGVIYRLDDPPSTTLIFDSGKAVCTGAQT 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A + L++LG P + +N+V + + PL+LN I +
Sbjct: 72 VDDVHEALSIVVEDLRELGIDIAADPPV---DVQNIVCSADLDQPLNLNAIAIGLGLEAI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G D +A L LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGSDPDDATVALEDVHDRLTDLG 183
>gi|195386532|ref|XP_002051958.1| GJ17285 [Drosophila virilis]
gi|194148415|gb|EDW64113.1| GJ17285 [Drosophila virilis]
Length = 387
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 20/203 (9%)
Query: 85 LAFQSGKLLILG--------AKHEHDCKLASRKFAKILKQLGHPEI---IFFFFRNMVGT 133
+ F +L IL A + A+ + A+ + +PE + N+V +
Sbjct: 1 MVFNENELPILTTNMAETTTAAANETIETAAIQAAEASEADANPEPSSELDIVINNVVCS 60
Query: 134 ISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAKHE 189
SV C L L +I S V Y N G++ M++ P TT + SG++ GA E
Sbjct: 61 FSVRCHLKLREIALHGSNVEYRREN-----GMVTMRLRRPYTTASIWSSGRITCTGAISE 115
Query: 190 HDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPEL 249
K+A+R++A+ L +LG P+ +Q F+I N++ TC + + +++ H +SYEPEL
Sbjct: 116 PQAKVAARRYARSLGKLGFPVHFQNFRIVNVLGTCSMPWSIRIVKFSERHRDNASYEPEL 175
Query: 250 FPGLIYRMVKPRVVLLIFVNGRI 272
PG+ Y+M P+ + IF G I
Sbjct: 176 HPGVTYKMRDPKATMKIFSTGSI 198
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 13/154 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L L +I S V Y N G++ M++ P TT + SG++
Sbjct: 56 NVVCSFSVRCHLKLREIALHGSNVEYRREN-----GMVTMRLRRPYTTASIWSSGRITCT 110
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YS 152
GA E K+A+R++A+ L +LG P + F FR N++GT S+ + + + + R R +
Sbjct: 111 GAISEPQAKVAARRYARSLGKLGFP-VHFQNFRIVNVLGTCSMPWSIRIVKFSERHRDNA 169
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P G+ K+ +P+ T F +G + + A
Sbjct: 170 SYEPELHPGVTYKMRDPKATMKIFSTGSITVTAA 203
>gi|449067334|ref|YP_007434416.1| transcription factor [Sulfolobus acidocaldarius N8]
gi|449069604|ref|YP_007436685.1| transcription factor [Sulfolobus acidocaldarius Ron12/I]
gi|449035842|gb|AGE71268.1| transcription factor [Sulfolobus acidocaldarius N8]
gi|449038112|gb|AGE73537.1| transcription factor [Sulfolobus acidocaldarius Ron12/I]
Length = 177
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Query: 134 ISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 193
+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK +
Sbjct: 1 MTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELI 60
Query: 194 LASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPG 252
A ++ K LK+ G + + +I NIV + ++ V LD + + YEPE FPG
Sbjct: 61 KAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPG 119
Query: 253 LIYRMVKPRVVLLIFVNGRI 272
LIYRM +PRVVLLIF +G++
Sbjct: 120 LIYRMDEPRVVLLIFSSGKM 139
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 45 ISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 104
+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK +
Sbjct: 1 MTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELI 60
Query: 105 LASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKF 159
A ++ K LK+ G P+I +N+V + ++ ++L++ + + Y P +F
Sbjct: 61 KAVKRIIKTLKKYGMQLTGKPKI---QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQF 117
Query: 160 HGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
GLI ++ PR L F SGK++I GAK E + A +K L +L
Sbjct: 118 PGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELD 165
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQK-----NRRGTNL---------NMVGTISV 47
S K +L + G + G ++ LI+ ++ + G L N+V + ++
Sbjct: 35 SPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANL 94
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
++L++ + + Y P +F GLI ++ PR L F SGK++I GAK E + A
Sbjct: 95 HVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAV 154
Query: 108 RKFAKILKQLG 118
+K L +L
Sbjct: 155 KKIFDKLVELD 165
>gi|304313987|ref|YP_003849134.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302587446|gb|ADL57821.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
Length = 181
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G +DL + + ++N +F GL+ K+ P+T L F SGKL+ GA
Sbjct: 8 IENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKLVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D K A + +++ + I + KI NIV + ++ P+ L+A+ + + + Y
Sbjct: 68 KSIEDSKRAIKLTVDMMRTMDPDIPEEFEIKIQNIVASANLGKPLNLEAVA-LGLENTEY 126
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ +P+VVLL+F +G++
Sbjct: 127 EPEQFPGLVYRLDEPKVVLLLFGSGKV 153
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G +DL + + ++N +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 10 NIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKLVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D K A + +++ + PE +N+V + ++G PL+L + + +EY P
Sbjct: 70 IEDSKRAIKLTVDMMRTMDPDIPEEFEIKIQNIVASANLGKPLNLEAVALGLENTEYEPE 129
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ P+ L F SGK++ GAK D KL K L +L
Sbjct: 130 QFPGLVYRLDEPKVVLLLFGSGKVVCTGAKSAEDAKLGVEKTKARLAEL 178
>gi|410916461|ref|XP_003971705.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T GC L+L+ I S+ + YN + + M++ PR T + SGK++ +GA
Sbjct: 15 NVVATFRTGCRLNLHTIGSKGKNVIYNTRR-GKVTMQLRKPRITASIWASGKVICIGASS 73
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E + KL +R+ A+ L++LG +K+ FK+ N++ C + F + L + ++YEPE
Sbjct: 74 EDEAKLGARRIARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKNRPIATYEPE 133
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
L+P +Y M +P+ + +F G +
Sbjct: 134 LYPAAMYTMRQPKATIKVFSTGSV 157
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T GC L+L+ I S+ + YN + + M++ PR T + SGK++ +GA
Sbjct: 15 NVVATFRTGCRLNLHTIGSKGKNVIYNTRR-GKVTMQLRKPRITASIWASGKVICIGASS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPL-------DLNQINSRVRYS 152
E + KL +R+ A+ L++LG ++ F F+ V + GC + D + N + +
Sbjct: 74 EDEAKLGARRIARCLQKLGF-KVKFSAFK--VVNVMAGCSMPFKISLIDFTKKNRPI--A 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + + + P+ T F +G + IL
Sbjct: 129 TYEPELYPAAMYTMRQPKATIKVFSTGSVTILA 161
>gi|15679622|ref|NP_276739.1| transcription factor [Methanothermobacter thermautotrophicus str.
Delta H]
gi|6647868|sp|O27664.1|TBP_METTH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2622753|gb|AAB86100.1| TATA-binding transcription initiation factor [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 181
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G +DL + + ++N +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 10 NIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKLVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D K A + +++ + PE +N+V + ++G PL+L + + +EY P
Sbjct: 70 IEDSKRAIKLTVDMMRTMDPDIPEEFEIKIQNIVASANLGKPLNLEAVALGLENTEYEPE 129
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ +P+ L F SGK++ GAK D KL K L +L
Sbjct: 130 QFPGLVYRLDDPKVVLLLFGSGKVVCTGAKSAEDAKLGVEKTKARLAEL 178
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G +DL + + ++N +F GL+ K+ P+T L F SGKL+ GA
Sbjct: 8 IENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKLVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D K A + +++ + I + KI NIV + ++ P+ L+A+ + + + Y
Sbjct: 68 KSIEDSKRAIKLTVDMMRTMDPDIPEEFEIKIQNIVASANLGKPLNLEAVA-LGLENTEY 126
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ P+VVLL+F +G++
Sbjct: 127 EPEQFPGLVYRLDDPKVVLLLFGSGKV 153
>gi|386875594|ref|ZP_10117754.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386806582|gb|EIJ66041.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V +DLN+I EY+P +F GL+ ++ P+T L F SGK++ G+K
Sbjct: 12 NVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVCTGSKS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
E + A + + L++ G + +N+V +I++G + L Q + S Y P
Sbjct: 72 EEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPRSMYEPE 131
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+F GLI ++L+P+T L F SGKL+ GAKHE D
Sbjct: 132 QFPGLIHRMLDPKTVILLFSSGKLVCTGAKHEPDV 166
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + V +DLN+I EY+P +F GL+ ++ P+T L F SGK++ G+K
Sbjct: 11 ENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVCTGSK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E + A + + L++ G +K I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKL 155
>gi|407463138|ref|YP_006774455.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046760|gb|AFS81513.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 187
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I + +EY+P +F GL+ ++ +PRT L F++GK++ GAK
Sbjct: 12 NVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLKSPRTATLIFRTGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E ++A + ++++L +I +N+V I++G + L + + S Y
Sbjct: 72 E---EMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++L+P+T L F SGKL+ GAK E D + +L++
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSVLEE 179
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DLN+I + +EY+P +F GL+ ++ +PRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLKSPRTATLIFRTGKMVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEEMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKL 155
>gi|448610758|ref|ZP_21661425.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445744442|gb|ELZ95920.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 188
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V + V LDL++++ + ++Y+P F GL+ + +P+ CL F+SGK++ GA
Sbjct: 13 QNVVASTEVSFELDLDRLSLDMSSTDYDPENFPGLVYRTHDPKAACLVFRSGKIVCTGAD 72
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 245
D A L LG P+ I NIV + D+ + L+AL + + Y
Sbjct: 73 SVTDVNAAIETLFDELDSLGVPVPDDPSPTIQNIVSSADLGGALNLNALAIGLGLEAVEY 132
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 133 EPEQFPGLVYRLDEPNVVILMFGSGKI 159
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL++++ + ++Y+P F GL+ + +P+ CL F+SGK++ GA
Sbjct: 14 NVVASTEVSFELDLDRLSLDMSSTDYDPENFPGLVYRTHDPKAACLVFRSGKIVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A L LG P+ +N+V + +G L+LN I + EY
Sbjct: 74 VTDVNAAIETLFDELDSLGVPVPDDPSPTIQNIVSSADLGGALNLNALAIGLGLEAVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GA+ D + A +++LG
Sbjct: 134 PEQFPGLVYRLDEPNVVILMFGSGKIVITGAEAVADAESALEVVDSDVRELG 185
>gi|448567600|ref|ZP_21637525.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445711598|gb|ELZ63388.1| transcription factor [Haloferax prahovense DSM 18310]
Length = 188
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A LG P+ + NIV + D+ + L+AL + +
Sbjct: 72 DSVDDVSTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGEALNLNALAIGLGLEAVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKI 159
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++ GA
Sbjct: 14 NVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A LG PE +N+V + +G L+LN I + EY
Sbjct: 74 VDDVSTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGEALNLNALAIGLGLEAVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GAK D + A + + +++LG
Sbjct: 134 PEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRTADAEAALKTVDEDVRELG 185
>gi|429193145|ref|YP_007178823.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448327012|ref|ZP_21516352.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429137363|gb|AFZ74374.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445609541|gb|ELY63341.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 185
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + EY+P F G + +I +P+ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLGPVAMDLEGVEYDPELFPGAVYRIDDPKAALLLFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 245
K D + A + L+ L P++ G + NIV + D+ + L+A+ + + Y
Sbjct: 70 KSTDDMRRAVEIVFEKLRDLSIPVEPDGVTVQNIVSSADLGHHLNLNAIAIGLGLENIEY 129
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ P VVLL+F +G+I
Sbjct: 130 EPEQFPGLVYRIDDPDVVLLLFGSGKI 156
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + EY+P F G + +I +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLGPVAMDLEGVEYDPELFPGAVYRIDDPKAALLLFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRVRYS--EYNP 156
D + A + L+ L P E +N+V + +G L+LN I + EY P
Sbjct: 72 TDDMRRAVEIVFEKLRDLSIPVEPDGVTVQNIVSSADLGHHLNLNAIAIGLGLENIEYEP 131
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F GL+ +I +P L F SGK++I G + D + A + L +LG
Sbjct: 132 EQFPGLVYRIDDPDVVLLLFGSGKIVITGGEQPDDAEQAVGQVRNRLGELG 182
>gi|307191585|gb|EFN75083.1| TATA box-binding protein-like protein 1 [Harpegnathos saltator]
Length = 297
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV C L+L +I + EY + +G+I MK+ P TT + SGK+ GA
Sbjct: 75 NVVCSFSVRCHLNLREIALKGSNVEYR--RENGMITMKLRRPYTTASIWSSGKVTCTGAT 132
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + + YEP
Sbjct: 133 SEVQAKIAARRFARSLQKLGFQVRFNNYRVVNVLGTCCMPFAIKITSFSVYHKENAEYEP 192
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
EL PG+ Y++ +P+ L IF G +
Sbjct: 193 ELHPGVTYKLKEPKATLKIFSTGSV 217
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L +I + EY + +G+I MK+ P TT + SGK+ GA
Sbjct: 75 NVVCSFSVRCHLNLREIALKGSNVEYR--RENGMITMKLRRPYTTASIWSSGKVTCTGAT 132
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINS-RVRYSEYN 155
E K+A+R+FA+ L++LG ++ F +R N++GT + + + + +EY
Sbjct: 133 SEVQAKIAARRFARSLQKLGF-QVRFNNYRVVNVLGTCCMPFAIKITSFSVYHKENAEYE 191
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ K+ P+ T F +G + +
Sbjct: 192 PELHPGVTYKLKEPKATLKIFSTGSVTVTA 221
>gi|126179334|ref|YP_001047299.1| transcription factor [Methanoculleus marisnigri JR1]
gi|125862128|gb|ABN57317.1| TATA binding protein of transcription factor TFIID [Methanoculleus
marisnigri JR1]
Length = 187
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL + SR++ +EYN +F G+++++ +P+ L F SGK+++ GAK
Sbjct: 14 NIVASAKVTDSLDLPSLASRLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGAKS 73
Query: 100 EHDCKLASRKFAKILKQL--GHPEIIFFFFRNMVGTISVGCPLDLNQINS--RVRYSEYN 155
+ + A L+ L PE + +N+V + +G P++LN+I + EY
Sbjct: 74 IDNLSRGLQILADQLRALDIDIPENPEYKIQNIVTSADLGTPINLNKIAVGFNLDKIEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ +P+ L F SGKL+I G K D + A ++ L LG
Sbjct: 134 PEQFPGLVYRLDDPKVVVLLFGSGKLIITGGKVPEDAQRAVKRILSELSSLG 185
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDL + SR++ +EYN +F G+++++ +P+ L F SGK+++ GA
Sbjct: 12 IENIVASAKVTDSLDLPSLASRLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K + + A L+ L I + +KI NIV + D+ P+ L+ + +
Sbjct: 72 KSIDNLSRGLQILADQLRALDIDIPENPEYKIQNIVTSADLGTPINLNKIAVGFNLDKIE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 132 YEPEQFPGLVYRLDDPKVVVLLFGSGKL 159
>gi|161529027|ref|YP_001582853.1| TATA-box binding family protein [Nitrosopumilus maritimus SCM1]
gi|160340328|gb|ABX13415.1| TATA-box binding family protein [Nitrosopumilus maritimus SCM1]
Length = 187
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I + +EY+P +F GL+ ++ PRT L F++GK++ GAK
Sbjct: 12 NVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLSTPRTATLIFRTGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E ++A + ++++L +I +N+V I++G + L + + S Y
Sbjct: 72 E---EMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++L+P+T L F SGKL+ GAK E D + +L++
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSVLEE 179
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DLN+I + +EY+P +F GL+ ++ PRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLSTPRTATLIFRTGKMVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEEMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKL 155
>gi|167042577|gb|ABZ07300.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW133I6]
Length = 186
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I + EY+P +F GL+ +I +P+T L F SGK++ GAK
Sbjct: 12 NVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
E + A + + L++ G + +N+V +I++G + L Q + S Y P
Sbjct: 72 ETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPRSMYEPE 131
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+F GLI ++++P+T L F SGKL+ GAK E D
Sbjct: 132 QFPGLIHRMVDPKTVILLFSSGKLVCTGAKKEPDV 166
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + SV +DLN+I + EY+P +F GL+ +I +P+T L F SGK++ GA
Sbjct: 10 IENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K E + A + + L++ G IK I NIV + ++ + L+ + S Y
Sbjct: 70 KSETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPR-SMY 128
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLI+RMV P+ V+L+F +G++
Sbjct: 129 EPEQFPGLIHRMVDPKTVILLFSSGKL 155
>gi|435850312|ref|YP_007311898.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
gi|433660942|gb|AGB48368.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
Length = 183
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL +I + +EYN KF GL+ ++ P+ L F SGK++ GA
Sbjct: 8 IENVVASTKLADEFDLTKIEAEFEGAEYNKQKFPGLVYRVSEPKAAFLVFTSGKVVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D AK L ++G IK + NIV + D+ + L+A+ + +
Sbjct: 68 KNVADVHTVISNMAKKLNEIGIKTIKEPEITVQNIVASADLHAVLNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ KP+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIDKPKVVVLIFSSGKL 155
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL +I + +EYN KF GL+ ++ P+ L F SGK++ GAK+
Sbjct: 10 NVVASTKLADEFDLTKIEAEFEGAEYNKQKFPGLVYRVSEPKAAFLVFTSGKVVCTGAKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D AK L ++G PEI +N+V + + L+LN I +
Sbjct: 70 VADVHTVISNMAKKLNEIGIKTIKEPEIT---VQNIVASADLHAVLNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K +C + L +G
Sbjct: 127 EYEPEQFPGLVYRIDKPKVVVLIFSSGKLVVTGGKTPENCAEGVEVVKQQLDSMG 181
>gi|391329921|ref|XP_003739415.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Metaseiulus occidentalis]
Length = 284
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 9/157 (5%)
Query: 120 PEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLA 175
P+ + N+V + SVGC L+L QI + V + + G++ MK+ NP TT
Sbjct: 54 PDELDIVINNVVCSFSVGCHLNLRQIALTGANVVFR-----RESGMVSMKLRNPYTTASI 108
Query: 176 FQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL 235
+ SGK+ GA E+ K+A+R+FA+ L++LG +++ FK+ N++ TC + F ++L
Sbjct: 109 WSSGKITCTGATSENTSKIAARRFARTLQKLGFKARFKNFKVVNVLGTCTMPFAIRLVPF 168
Query: 236 HHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + YEPEL PG+ Y++ + R L IF G I
Sbjct: 169 SQTNKPIAQYEPELHPGVTYKIKEIRASLKIFSTGSI 205
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SVGC L+L QI + V + + G++ MK+ NP TT + SGK+
Sbjct: 63 NVVCSFSVGCHLNLRQIALTGANVVFR-----RESGMVSMKLRNPYTTASIWSSGKITCT 117
Query: 96 GAKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDL---NQINSRVRY 151
GA E+ K+A+R+FA+ L++LG F N++GT ++ + L +Q N +
Sbjct: 118 GATSENTSKIAARRFARTLQKLGFKARFKNFKVVNVLGTCTMPFAIRLVPFSQTNKPI-- 175
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
++Y P G+ KI R + F +G + +
Sbjct: 176 AQYEPELHPGVTYKIKEIRASLKIFSTGSITVTA 209
>gi|241239027|ref|XP_002401459.1| TATA-box-binding protein, putative [Ixodes scapularis]
gi|215496181|gb|EEC05822.1| TATA-box-binding protein, putative [Ixodes scapularis]
Length = 316
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 122 IIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGK 180
+I N+V + SV C L+L QI EY + +G L MKI P TT + SGK
Sbjct: 70 VIDIVINNVVCSFSVRCHLNLRQIALTATNVEYR--RENGMLTMKIRAPYTTASMWSSGK 127
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+ GA E K+A+R++A+IL++LG +K+ +++ N++ TC + F +KL +
Sbjct: 128 VTCTGATSEETAKMAARRYARILQKLGFRVKFMNYRVVNVLGTCTMPFAIKLIPFSQHNR 187
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+SYEPEL PG+ Y++ + L IF G I
Sbjct: 188 GLASYEPELHPGVTYKIKDLKATLKIFSTGSI 219
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L QI EY + +G L MKI P TT + SGK+ GA
Sbjct: 77 NVVCSFSVRCHLNLRQIALTATNVEYR--RENGMLTMKIRAPYTTASMWSSGKVTCTGAT 134
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYN 155
E K+A+R++A+IL++LG + F +R N++GT ++ + L + R + Y
Sbjct: 135 SEETAKMAARRYARILQKLGF-RVKFMNYRVVNVLGTCTMPFAIKLIPFSQHNRGLASYE 193
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ KI + + T F +G + +
Sbjct: 194 PELHPGVTYKIKDLKATLKIFSTGSITVTA 223
>gi|167042151|gb|ABZ06885.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW93E5]
Length = 186
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I + EY+P +F GL+ +I +P+T L F SGK++ GAK
Sbjct: 12 NVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
E + A + + L++ G + +N+V +I++G + L Q + S Y P
Sbjct: 72 ETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPRSMYEPE 131
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+F GLI ++++P+T L F SGKL+ GAK E D
Sbjct: 132 QFPGLIHRMVDPKTVILLFSSGKLVCTGAKKEPDV 166
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + SV +DLN+I + EY+P +F GL+ +I +P+T L F SGK++ GA
Sbjct: 10 IENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K E + A + + L++ G IK I NIV + ++ + L+ + S Y
Sbjct: 70 KSETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPR-SMY 128
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLI+RMV P+ V+L+F +G++
Sbjct: 129 EPEQFPGLIHRMVDPKTVILLFSSGKL 155
>gi|332031263|gb|EGI70797.1| TATA box-binding protein-like protein 1 [Acromyrmex echinatior]
Length = 401
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 9/148 (6%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 184
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 176 NVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTCT 230
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + +
Sbjct: 231 GATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCSMPFAIKITSFSVHHKENAD 290
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPEL PG+ Y++ +P+ L IF G +
Sbjct: 291 YEPELHPGVTYKLKEPKATLKIFSTGSV 318
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 176 NVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTCT 230
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRY-S 152
GA E K+A+R+FA+ L++LG ++ F +R N++GT S+ + + + + +
Sbjct: 231 GATSEVQAKIAARRFARSLQKLGF-KVRFNNYRVVNVLGTCSMPFAIKITSFSVHHKENA 289
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+Y P G+ K+ P+ T F +G + +
Sbjct: 290 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVTA 322
>gi|448581629|ref|ZP_21645410.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445733392|gb|ELZ84962.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 188
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++ GA
Sbjct: 14 NVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKVVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A LG PE +N+V + +G L+LN I + EY
Sbjct: 74 VDDVGTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGAALNLNALAIGLGLEDVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GAK D + A + + +++LG
Sbjct: 134 PEQFPGLVYRLDEPSVVVLMFGSGKVVITGAKRTTDAEAALKTVDEDVRELG 185
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKVVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A LG P+ + NIV + D+ + L+AL + +
Sbjct: 72 DSVDDVGTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGAALNLNALAIGLGLEDVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G++
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKV 159
>gi|448593777|ref|ZP_21652677.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445728641|gb|ELZ80242.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 12/153 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +VG LDL ++ V +E+NP F GL+ + +PR L F+SGK++ GA
Sbjct: 12 IQNVVASSAVGQELDLESLSDDVAGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDA------LHHVH 239
+ A + + L LG P + + NIV + D+ + L+A L HV
Sbjct: 72 SSVDEVNRALEQVFEELGSLGIPTDGREEATVQNIVSSADLGTTLNLNALAIGLGLEHVE 131
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV+L+F +G+I
Sbjct: 132 -----YEPEQFPGLVYRIDDPNVVVLLFGSGKI 159
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +VG LDL ++ V +E+NP F GL+ + +PR L F+SGK++ GA
Sbjct: 14 NVVASSAVGQELDLESLSDDVAGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCTGASS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEI--IFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
+ A + + L LG P +N+V + +G L+LN I + + EY
Sbjct: 74 VDEVNRALEQVFEELGSLGIPTDGREEATVQNIVSSADLGTTLNLNALAIGLGLEHVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ +I +P L F SGK++I GAK + A + ++ LG
Sbjct: 134 PEQFPGLVYRIDDPNVVVLLFGSGKIVITGAKKVEFAREAINVVSDEIESLG 185
>gi|433593266|ref|YP_007282752.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|433308304|gb|AGB34114.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
Length = 194
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + VG L+L + + +SEYNPG F G++ +I +P L F+SGK++ GA
Sbjct: 10 IENVVASTGVGQELNLEALADDLPHSEYNPGNFPGMVHRIQDPNAVTLLFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
+ D A + L+ LG + Q I NIV + D+ + L+A+ + + +
Sbjct: 70 QSTADVTDALNILFQDLRDLGIDVVDQPEITIQNIVSSGDLGEQIDLNAIAIGLGLEHTE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV+L+F +G++
Sbjct: 130 YEPEQFPGLVYRLTSPPVVVLLFGSGKL 157
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + VG L+L + + +SEYNPG F G++ +I +P L F+SGK++ GA+
Sbjct: 12 NVVASTGVGQELNLEALADDLPHSEYNPGNFPGMVHRIQDPNAVTLLFRSGKIVCTGAQS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A + L+ LG PEI +N+V + +G +DLN I + ++
Sbjct: 72 TADVTDALNILFQDLRDLGIDVVDQPEIT---IQNIVSSGDLGEQIDLNAIAIGLGLEHT 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
EY P +F GL+ ++ +P L F SGKL+I GAK + + A L++L
Sbjct: 129 EYEPEQFPGLVYRLTSPPVVVLLFGSGKLVITGAKTRDNAQSALETVHSRLREL 182
>gi|118576418|ref|YP_876161.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118194939|gb|ABK77857.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 12 NVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSKS 71
Query: 100 EHDCKLASRKFAKILKQLG---HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
E + A + + L++ G E + +N+V +I++G + L Q + S Y P
Sbjct: 72 EEMARKAVKTVVQKLRKGGIKVKKEAV-VEIQNIVASINLGGKIHLEQAARTLPRSMYEP 130
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 131 EQFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDV 166
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 11 ENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E + A + + L++ G +K + +I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKEAVVEIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKL 155
>gi|325959799|ref|YP_004291265.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
gi|325331231|gb|ADZ10293.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
Length = 181
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + ++G LDL Q+ + EYN +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 9 ENIVASAALGKSLDLPQVAPALEGVEYNSEQFPGLVYKLKEPKTAALIFGSGKLVCTGAK 68
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D K A ++ L I ++ KI NIV + ++ + L+++ + + + YE
Sbjct: 69 SIEDSKKAIHIAVDKMRALDTEIPHEFEIKIQNIVASANLGKTLNLESVA-LDLENTEYE 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL+YR+ P+VVLL+F +G++
Sbjct: 128 PEQFPGLVYRLDDPKVVLLLFGSGKV 153
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G LDL Q+ + EYN +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 10 NIVASAALGKSLDLPQVAPALEGVEYNSEQFPGLVYKLKEPKTAALIFGSGKLVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D K A ++ L P +N+V + ++G L+L + + +EY P
Sbjct: 70 IEDSKKAIHIAVDKMRALDTEIPHEFEIKIQNIVASANLGKTLNLESVALDLENTEYEPE 129
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ +P+ L F SGK++ GAK D +L K + L +L
Sbjct: 130 QFPGLVYRLDDPKVVLLLFGSGKVVCTGAKSFEDAQLGVEKTKERLAEL 178
>gi|161528106|ref|YP_001581932.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407462144|ref|YP_006773461.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
gi|160339407|gb|ABX12494.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407045766|gb|AFS80519.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
Length = 186
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 12 NVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSKS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
E + A + + L++ G + +N+V +I++G + L Q + S Y P
Sbjct: 72 EEMARKAVKTVVQKLRKGGIKVKKDAVVEIQNIVASINLGGKIHLEQAARTLPRSMYEPE 131
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 132 QFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDV 166
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 11 ENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E + A + + L++ G +K +I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKDAVVEIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKL 155
>gi|407465522|ref|YP_006776404.1| TATA-box binding family protein [Candidatus Nitrosopumilus sp. AR2]
gi|407048710|gb|AFS83462.1| TATA-box binding family protein [Candidatus Nitrosopumilus sp. AR2]
Length = 187
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 90/158 (56%), Gaps = 8/158 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DL +I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 12 NVVASASVDQKIDLIEITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E ++A + ++++L +I +N+V I++G + L + + S Y
Sbjct: 72 E---EMAIKAVNTVVQKLRKGKIKIKKDAVITVQNIVAAINLGGKIHLEKAARTLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
P +F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDV 166
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DL +I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLIEITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEEMAIKAVNTVVQKLRKGKIKIKKDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKL 155
>gi|189237795|ref|XP_972962.2| PREDICTED: similar to tata-box binding protein [Tribolium
castaneum]
gi|270007920|gb|EFA04368.1| hypothetical protein TcasGA2_TC014666 [Tribolium castaneum]
Length = 262
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 9/157 (5%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLA 175
PEI N+V + SV C L+L +I V Y + N GK + MK+ P TT
Sbjct: 48 EPEIDIMI-NNVVCSFSVRCHLNLREIALNGINVEYRKEN-GK---ITMKLRRPYTTASI 102
Query: 176 FQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL 235
+ SGK+ GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+++
Sbjct: 103 WSSGKVTCTGATSELQAKIAARRFARCLQKLGFKVRFNNYRVVNVLGTCSMPFAIKINSF 162
Query: 236 HHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H + + YEPEL PG+ Y++ P+ L IF G +
Sbjct: 163 SERHKE-ADYEPELHPGVTYKLQSPKATLKIFSTGSV 198
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V + SV C L+L +I V Y + N GK + MK+ P TT + SGK+ G
Sbjct: 57 NVVCSFSVRCHLNLREIALNGINVEYRKEN-GK---ITMKLRRPYTTASIWSSGKVTCTG 112
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSEY 154
A E K+A+R+FA+ L++LG ++ F +R N++GT S+ + +N + R + ++Y
Sbjct: 113 ATSELQAKIAARRFARCLQKLGF-KVRFNNYRVVNVLGTCSMPFAIKINSFSERHKEADY 171
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ K+ +P+ T F +G + +
Sbjct: 172 EPELHPGVTYKLQSPKATLKIFSTGSVTVTA 202
>gi|448621885|ref|ZP_21668634.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445754915|gb|EMA06309.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A LG PI + + NIV + D+ + L+AL + +
Sbjct: 72 NSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKI 159
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++ GA
Sbjct: 14 NVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGANS 73
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A LG P+ +N+V + +G L+LN I + EY
Sbjct: 74 VGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEAVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GAK D + A + +++LG
Sbjct: 134 PEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKQVADAEAALETVDEDVRELG 185
>gi|298675995|ref|YP_003727745.1| TATA-box-binding family protein [Methanohalobium evestigatum
Z-7303]
gi|298288983|gb|ADI74949.1| TATA-box binding family protein [Methanohalobium evestigatum
Z-7303]
Length = 187
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL +I + +EYN KF GL+ ++ NP+ L F SGK++ GA
Sbjct: 12 IENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D + AK L +G IK + NIV + D+ + L+A+ + +
Sbjct: 72 KNVDDVHVVIGNMAKKLNDIGIETIKDPVITVQNIVASADLHAVLNLNAIAIGLGLENIE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 132 YEPEQFPGLVYRIDDPKVVVLIFSSGKL 159
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL +I + +EYN KF GL+ ++ NP+ L F SGK++ GAK+
Sbjct: 14 NVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTGAKN 73
Query: 100 EHDCKLASRKFAKILKQLGHPEI--IFFFFRNMVGTISVGCPLDLNQINSRVRYS--EYN 155
D + AK L +G I +N+V + + L+LN I + EY
Sbjct: 74 VDDVHVVIGNMAKKLNDIGIETIKDPVITVQNIVASADLHAVLNLNAIAIGLGLENIEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 193
P +F GL+ +I +P+ L F SGKL++ G K C+
Sbjct: 134 PEQFPGLVYRIDDPKVVVLIFSSGKLVVTGGKSPDHCE 171
>gi|329764826|ref|ZP_08256418.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|340344477|ref|ZP_08667609.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|393796672|ref|ZP_10380036.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
gi|329138693|gb|EGG42937.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|339519618|gb|EGP93341.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 12 NVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSKS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
E + A + + L++ G + +N+V +I++G + L Q + S Y P
Sbjct: 72 EEMARKAVKTVVQKLRKGGIKVKKDATVEIQNIVASINLGGKIHLEQAARTLPRSMYEPE 131
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 132 QFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDV 166
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 11 ENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E + A + + L++ G +K +I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKDATVEIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKL 155
>gi|448603976|ref|ZP_21657400.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445744772|gb|ELZ96244.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
Length = 188
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A LG PI + + NIV + D+ + L+AL + +
Sbjct: 72 NSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEAVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRLDEPSVVVLMFGSGKI 159
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++ GA
Sbjct: 14 NVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCTGANS 73
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A LG P+ +N+V + +G L+LN I + EY
Sbjct: 74 VGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEAVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GAK D + A + +++LG
Sbjct: 134 PEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVADAEAALETVDEDVRELG 185
>gi|407465173|ref|YP_006776055.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407048361|gb|AFS83113.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 4/172 (2%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 11 VNVVASATIEQKLDLVDITKKFPAVEYHPEQFPGAVFRLKNPKTATLLFGSGKMVCTGAK 70
Query: 99 HEHDCKLASRKFAKILKQLGHPEI---IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYN 155
+ + A + KIL++ G +I +N+V +I++G ++L Q + S Y
Sbjct: 71 SQELAETAVFEVVKILRK-GKIKIKNDPIVSIQNIVSSINLGGKVNLEQAARTLPRSMYE 129
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++L+P+T L F SGKL+ +GAK E D + + +L++ G
Sbjct: 130 PEQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKDVHRSVNQIHALLEEKG 181
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 12 NVVASATIEQKLDLVDITKKFPAVEYHPEQFPGAVFRLKNPKTATLLFGSGKMVCTGAKS 71
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ + A + KIL++ IK I NIV + ++ V L+ + S YEP
Sbjct: 72 QELAETAVFEVVKILRKGKIKIKNDPIVSIQNIVSSINLGGKVNLEQAARTLPR-SMYEP 130
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM+ P+ V+LIF +G++
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKL 155
>gi|410722027|ref|ZP_11361343.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
gi|410597924|gb|EKQ52528.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
Length = 181
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G LDL Q+ + EYN +F GL+ KI P+T L F SGKL+ GA
Sbjct: 8 VENIVTSATIGKDLDLPQVAPALEGVEYNLEQFPGLVYKIKEPKTAALIFGSGKLVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K + K A ++ L I ++ K+ NIV + ++ + L+A+ + + + Y
Sbjct: 68 KSIENSKKAIHIAVDKMRTLDPEIPHEYEMKVQNIVASANLEKTLNLEAVA-LDLENTEY 126
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ +P+VVLL+F +G++
Sbjct: 127 EPEQFPGLVYRLGEPKVVLLLFGSGKV 153
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G LDL Q+ + EYN +F GL+ KI P+T L F SGKL+ GAK
Sbjct: 10 NIVTSATIGKDLDLPQVAPALEGVEYNLEQFPGLVYKIKEPKTAALIFGSGKLVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFF---FRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
+ K A ++ L PEI + +N+V + ++ L+L + + +EY P
Sbjct: 70 IENSKKAIHIAVDKMRTL-DPEIPHEYEMKVQNIVASANLEKTLNLEAVALDLENTEYEP 128
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ P+ L F SGK++ GAK D +L K + L +L
Sbjct: 129 EQFPGLVYRLGEPKVVLLLFGSGKVVCTGAKTIADAQLGVEKTKERLSEL 178
>gi|6573566|pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 181
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K A+ LK +G P+I +NMV + +G +L+ + + EY
Sbjct: 73 VQDIERAVAKLAQKLKSIGVKFKRAPQI---DVQNMVFSGDIGREFNLDVVALTLPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F G+I ++ P++ L F SGK++ GAK E D A RK + L +
Sbjct: 130 EPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDK 180
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D + A K A+ LK +G K + N+V + D+ LD + Y
Sbjct: 71 KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-CEY 129
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPG+IYR+ +P+ V+L+F +G+I
Sbjct: 130 EPEQFPGVIYRVKEPKSVILLFSSGKI 156
>gi|2392146|pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 182
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
D + A K A+ LK +G P+I +NMV + +G +L+ + + EY
Sbjct: 73 VQDIERAVAKLAQKLKSIGVKFKRAPQI---DVQNMVFSGDIGREFNLDVVALTLPNCEY 129
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F G+I ++ P++ L F SGK++ GAK E D A RK + L +
Sbjct: 130 EPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDK 180
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D + A K A+ LK +G K + N+V + D+ LD + Y
Sbjct: 71 KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-CEY 129
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPG+IYR+ +P+ V+L+F +G+I
Sbjct: 130 EPEQFPGVIYRVKEPKSVILLFSSGKI 156
>gi|116753474|ref|YP_842592.1| transcription factor [Methanosaeta thermophila PT]
gi|121693723|sp|A0B5H8.1|TBP_METTP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116664925|gb|ABK13952.1| TATA binding protein of transcription factor TFIID [Methanosaeta
thermophila PT]
Length = 183
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL +I S + +EYN KF GL+ ++ +P+ L F SGK++ GAK+
Sbjct: 9 NVVASTKLADEFDLVKIESELEGAEYNKEKFPGLVYRVKSPKAAFLIFTSGKVVCTGAKN 68
Query: 100 EHDCKLASRKFAKILKQLG------HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS- 152
D + A+ LK +G PEI +N+V + + L+LN I +
Sbjct: 69 VEDVRTVITNMARTLKSIGFDNINLEPEI---HVQNIVASADLKTDLNLNAIALGLGLEN 125
Query: 153 -EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K +C+ R + L+ LG
Sbjct: 126 IEYEPEQFPGLVYRIKQPKVVVLIFSSGKLVVTGGKSPEECEEGVRIVRQQLENLG 181
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL +I S + +EYN KF GL+ ++ +P+ L F SGK++ GA
Sbjct: 7 IENVVASTKLADEFDLVKIESELEGAEYNKEKFPGLVYRVKSPKAAFLIFTSGKVVCTGA 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--NIVCTCDVRFPVKLDALH-HVHSQFS 243
K+ D + A+ LK +G +IH NIV + D++ + L+A+ + +
Sbjct: 67 KNVEDVRTVITNMARTLKSIGFDNINLEPEIHVQNIVASADLKTDLNLNAIALGLGLENI 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+LIF +G++
Sbjct: 127 EYEPEQFPGLVYRIKQPKVVVLIFSSGKL 155
>gi|448316921|ref|ZP_21506499.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445606151|gb|ELY60056.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + G DL + + ++Y+P F G++ ++ NP++ L F +GK++ GAK
Sbjct: 11 ENVVASGDTGREFDLQALADDLNNAQYDPNTFPGIVYRMDNPQSAGLIFHTGKIVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYE 246
D ++ LKQLG ++ F I NIV + D+ + L+A+ + YE
Sbjct: 71 SVEDINKSAETIFNALKQLGIAVEENPFTIQNIVSSADLGCSLNLNAVAIGLGLGQIEYE 130
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGR 271
PE FPGL+YR+ KP VV+L+F +G+
Sbjct: 131 PEQFPGLVYRLDKPDVVVLLFGSGK 155
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 3/174 (1%)
Query: 37 TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
T N+V + G DL + + ++Y+P F G++ ++ NP++ L F +GK++ G
Sbjct: 9 TTENVVASGDTGREFDLQALADDLNNAQYDPNTFPGIVYRMDNPQSAGLIFHTGKIVCTG 68
Query: 97 AKHEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS--E 153
AK D ++ LKQLG E F +N+V + +GC L+LN + + E
Sbjct: 69 AKSVEDINKSAETIFNALKQLGIAVEENPFTIQNIVSSADLGCSLNLNAVAIGLGLGQIE 128
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P +F GL+ ++ P L F SGK +I G D A L+ +G
Sbjct: 129 YEPEQFPGLVYRLDKPDVVVLLFGSGKAVITGGTEIQDAATAVNVIISKLENVG 182
>gi|257386786|ref|YP_003176559.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
gi|257169093|gb|ACV46852.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
Length = 186
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHQSLRIVFDKLRDLNIQVDDDPEIV---VQNIVTSADLGRTLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D K A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKEAVDKIVSRLEDLG 183
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRTLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVALLFGSGKL 157
>gi|342306417|dbj|BAK54506.1| TATA box-binding protein [Sulfolobus tokodaii str. 7]
Length = 175
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
LDL + V EY+P +F GLI ++ P+ T L F+SGK+++ GAK + A ++
Sbjct: 5 LDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRI 64
Query: 200 AKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMV 258
K LK+ G + + +I NIV + ++ V LD + + YEPE FPGLIYRM
Sbjct: 65 IKTLKRYGMNLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPGLIYRME 123
Query: 259 KPRVVLLIFVNGRI 272
PRVVLLIF +G++
Sbjct: 124 DPRVVLLIFSSGKM 137
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
LDL + V EY+P +F GLI ++ P+ T L F+SGK+++ GAK + A ++
Sbjct: 5 LDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRI 64
Query: 111 AKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMK 165
K LK+ G P+I +N+V + ++ ++L++ + + Y P +F GLI +
Sbjct: 65 IKTLKRYGMNLTGKPKIQ---IQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYR 121
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+ +PR L F SGK++I GAK E + A +K L +L
Sbjct: 122 MEDPRVVLLIFSSGKMVITGAKREEEVHKAVKKIFDKLVELD 163
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQK-----NRRGTNL---------NMVGTISV 47
+ K +L + G + G ++ LI+ ++ R G NL N+V + ++
Sbjct: 33 APKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRYGMNLTGKPKIQIQNIVASANL 92
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
++L++ + + Y P +F GLI ++ +PR L F SGK++I GAK E + A
Sbjct: 93 HVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVITGAKREEEVHKAV 152
Query: 108 RKFAKILKQLG 118
+K L +L
Sbjct: 153 KKIFDKLVELD 163
>gi|294496460|ref|YP_003542953.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
gi|292667459|gb|ADE37308.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
Length = 183
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL +I + +EYN KF GL+ ++ NP+ L F SGK++ GA
Sbjct: 8 IENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D AK L +G ++ + NIV + D++ + L+A+ + +
Sbjct: 68 KNVDDVHTVIADMAKKLNGIGIDTLEKPDITVQNIVASADLKAVLNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKL 155
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL +I + +EYN KF GL+ ++ NP+ L F SGK++ GAK+
Sbjct: 10 NVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTGAKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D AK L +G P+I +N+V + + L+LN I +
Sbjct: 70 VDDVHTVIADMAKKLNGIGIDTLEKPDIT---VQNIVASADLKAVLNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K +C+ + L +G
Sbjct: 127 EYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKSPENCEEGVEVVRQQLDNMG 181
>gi|442615484|ref|NP_001259329.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
gi|440216531|gb|AGB95174.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
Length = 1714
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 184
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1288 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1342
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 1343 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1402
Query: 245 YEPELFPGLIYRM--VKPRVVLLIFVNGRI 272
YEPEL PG+ Y+M P+ L IF G +
Sbjct: 1403 YEPELHPGVTYKMRDPDPKATLKIFSTGSV 1432
Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 19/162 (11%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1288 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1342
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSE 153
GA E K+A+R++A+ L +LG P F FR N++GT S+ P + +N R+ E
Sbjct: 1343 GATSESMAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSM--PWAIKIVNFSERHRE 1399
Query: 154 ---YNPGKFHGLIMKIL--NPRTTCLAFQSGKLLILGAKHEH 190
Y P G+ K+ +P+ T F +G + + A H
Sbjct: 1400 NASYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVNH 1441
>gi|161077628|ref|NP_001096905.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|281360601|ref|NP_001162701.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|442615486|ref|NP_001259330.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
gi|76446337|gb|ABA42953.1| TRF2 [Drosophila melanogaster]
gi|158031744|gb|ABW09355.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|272506032|gb|ACZ95236.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|440216532|gb|AGB95175.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
Length = 1715
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 184
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1289 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1343
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 1344 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1403
Query: 245 YEPELFPGLIYRM--VKPRVVLLIFVNGRI 272
YEPEL PG+ Y+M P+ L IF G +
Sbjct: 1404 YEPELHPGVTYKMRDPDPKATLKIFSTGSV 1433
Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 19/162 (11%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1289 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1343
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSE 153
GA E K+A+R++A+ L +LG P F FR N++GT S+ P + +N R+ E
Sbjct: 1344 GATSESMAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSM--PWAIKIVNFSERHRE 1400
Query: 154 ---YNPGKFHGLIMKIL--NPRTTCLAFQSGKLLILGAKHEH 190
Y P G+ K+ +P+ T F +G + + A H
Sbjct: 1401 NASYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVNH 1442
>gi|417904|sp|P32086.1|TBP_PLAFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|5911375|gb|AAD55768.1|AF177280_1 TATA-binding protein [Plasmodium falciparum]
gi|160700|gb|AAA29769.1| TATA-binding protein [Plasmodium falciparum]
gi|38194140|gb|AAR13208.1| TATA-binding protein [synthetic construct]
Length = 228
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 12/152 (7%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N++ + ++ ++L + +R +EYNP K + LI+++ P+ T L F++G++++ G +
Sbjct: 54 NIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTGTRT 113
Query: 189 EHD----CKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
+ D CK ++ + K +K+ FKI NI+ + + P++L+ L H H ++ +
Sbjct: 114 KKDSIMGCKKIAKIIKIVTKD---KVKFCNFKIENIIASANCNIPIRLEVLAHDHKEYCN 170
Query: 245 YEPELFPGLIYRMVKP----RVVLLIFVNGRI 272
YEPELF GL+YR KP + V+LIFV+G+I
Sbjct: 171 YEPELFAGLVYRY-KPTSNLKSVILIFVSGKI 201
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ + ++ ++L + +R +EYNP K + LI+++ P+ T L F++G++++ G +
Sbjct: 54 NIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTGTRT 113
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
+ D + +K AKI+K + ++ F F N++ + + P+ L + + Y Y P
Sbjct: 114 KKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHKEYCNYEP 173
Query: 157 GKFHGLIMK---ILNPRTTCLAFQSGKLLILGAK 187
F GL+ + N ++ L F SGK++I G K
Sbjct: 174 ELFAGLVYRYKPTSNLKSVILIFVSGKIIITGCK 207
>gi|448576731|ref|ZP_21642607.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445728919|gb|ELZ80519.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + + LDL ++ + +EYNP F GL+ + +P++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
A + L LG P+ + + NIV + D+R + L+AL + +
Sbjct: 72 DSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLNALAIGLGLEDVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G++
Sbjct: 132 YEPEQFPGLVYRLEEPSVVVLMFGSGKV 159
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + LDL ++ + +EYNP F GL+ + +P++ CL F+SGK++ GA
Sbjct: 14 NVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKIVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
A + L LG PEI +N+V + + L+LN I +
Sbjct: 74 VEGVHAALDILFEELSDLGIPLPDEPEIT---VQNIVSSADLRSNLNLNALAIGLGLEDV 130
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGK++I GAK + A +++LG
Sbjct: 131 EYEPEQFPGLVYRLEEPSVVVLMFGSGKVVITGAKEVAQAEQAIEVVRDEVQKLG 185
>gi|332159172|ref|YP_004424451.1| transcription factor [Pyrococcus sp. NA2]
gi|331034635|gb|AEC52447.1| transcription factor [Pyrococcus sp. NA2]
Length = 191
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D + A K + LK +G +NMV + +G +L+ + + EY P
Sbjct: 73 IQDIEKAVAKLIQKLKGIGVKFKRAPLIDIQNMVFSGDLGREFNLDNVALTLPNCEYEPE 132
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F G+I ++ +PR L F SGK++ GAK E D A RK + L++ G
Sbjct: 133 QFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYG 182
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D + A K + LK +G K I N+V + D+ LD + Y
Sbjct: 71 KSIQDIEKAVAKLIQKLKGIGVKFKRAPLIDIQNMVFSGDLGREFNLDNVALTLPN-CEY 129
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPG+IYR+ PR V+L+F +G+I
Sbjct: 130 EPEQFPGVIYRVKDPRAVILLFSSGKI 156
>gi|448591939|ref|ZP_21651314.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445733228|gb|ELZ84803.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + + LDL ++ + +EYNP F GL+ + +P++ CL F+SGK++ GA
Sbjct: 12 IQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
A + L LG P+ + + NIV + D+R + L+AL + +
Sbjct: 72 DSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLNALAIGLGLEDVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G++
Sbjct: 132 YEPEQFPGLVYRLEEPSVVVLMFGSGKV 159
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + LDL ++ + +EYNP F GL+ + +P++ CL F+SGK++ GA
Sbjct: 14 NVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKIVCTGADS 73
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
A + L LG PEI +N+V + + L+LN I +
Sbjct: 74 VEGVHAALDILFEELSDLGIPLPDEPEIT---VQNIVSSADLRSNLNLNALAIGLGLEDV 130
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGK++I GAK + A + +++LG
Sbjct: 131 EYEPEQFPGLVYRLEEPSVVVLMFGSGKVVITGAKEVAQAEEAIKVVRDEVQKLG 185
>gi|14590849|ref|NP_142921.1| transcription factor [Pyrococcus horikoshii OT3]
gi|6647870|sp|O58737.1|TBP_PYRHO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|3257423|dbj|BAA30106.1| 191aa long hypothetical TATA-binding protein (transcription
initiation factor TFIID) [Pyrococcus horikoshii OT3]
Length = 191
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D + A K + LK +G +NMV + +G +L+ + + EY P
Sbjct: 73 IQDIERAVAKLIQKLKGIGVKFKRAPLIDVQNMVFSGDIGREFNLDNVALTLPNCEYEPE 132
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F G+I ++ PR L F SGK++ GAK E D A RK + L++ G
Sbjct: 133 QFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYG 182
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K D + A K + LK +G K + N+V + D+ LD + Y
Sbjct: 71 KSIQDIERAVAKLIQKLKGIGVKFKRAPLIDVQNMVFSGDIGREFNLDNVALTLPN-CEY 129
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPG+IYR+ +PR V+L+F +G+I
Sbjct: 130 EPEQFPGVIYRVKEPRAVILLFSSGKI 156
>gi|393796304|ref|ZP_10379668.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia BG20]
Length = 186
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 4/170 (2%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 11 VNVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGAK 70
Query: 99 HEHDCKLASRKFAKILKQLGHPEI---IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYN 155
+ + A K +LK+ G +I +N+V +I++G ++L Q + S Y
Sbjct: 71 SQELAETAVAKVVSMLKK-GKIKIKNEAEVTIQNIVSSINLGGRVNLEQAARTLPRSMYE 129
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++L+P+T L F SGKL+ +GAK E D + + +L++
Sbjct: 130 PEQFPGLIHRMLDPKTVILIFSSGKLVCVGAKLEKDVHRSVNQIHSLLEE 179
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 12 NVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGAKS 71
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ + A K +LK+ IK + I NIV + ++ V L+ + S YEP
Sbjct: 72 QELAETAVAKVVSMLKKGKIKIKNEAEVTIQNIVSSINLGGRVNLEQAARTLPR-SMYEP 130
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM+ P+ V+LIF +G++
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKL 155
>gi|15791061|ref|NP_280885.1| transcription factor [Halobacterium sp. NRC-1]
gi|169236811|ref|YP_001690011.1| transcription factor [Halobacterium salinarum R1]
gi|14423951|sp|Q9HN56.1|TBPE_HALSA RecName: Full=TATA-box-binding protein E; AltName: Full=Box
A-binding protein E; Short=BAP E; AltName: Full=TATA
sequence-binding protein E; Short=TBP E; AltName:
Full=TATA-box factor E
gi|10581658|gb|AAG20365.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|167727877|emb|CAP14665.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELSIKVEDDPEIV---VQNIVTSADLGRQLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A K L++LG
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPKDAEHAVDKITSRLEELG 183
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L ++ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELSIKVEDDPEIVVQNIVTSADLGRQLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPEVVALLFGSGKL 157
>gi|340344813|ref|ZP_08667945.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519954|gb|EGP93677.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 11 VNVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGAK 70
Query: 99 HEHDCKLASRKFAKILKQLGHPEI---IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYN 155
+ + A K +IL++ G +I +N+V +I++G ++L Q + S Y
Sbjct: 71 SQELAEDAVSKVVEILRK-GKIKIKNDATVTIQNIVSSINLGGRVNLEQAARTLPRSMYE 129
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++L+P+T L F SGKL+ +GAK E D + + +L++
Sbjct: 130 PEQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKDIHRSVHQIHSMLEE 179
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 12 NVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGAKS 71
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ + A K +IL++ IK I NIV + ++ V L+ + S YEP
Sbjct: 72 QELAEDAVSKVVEILRKGKIKIKNDATVTIQNIVSSINLGGRVNLEQAARTLPR-SMYEP 130
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM+ P+ V+LIF +G++
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKL 155
>gi|322796560|gb|EFZ19034.1| hypothetical protein SINV_07503 [Solenopsis invicta]
Length = 303
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV C L+L +I + EY + +G+I MK+ P TT + SGK+ GA
Sbjct: 81 NVVCSFSVRCHLNLREIALKGSNVEYR--RENGMITMKLRRPYTTASIWSSGKVTCTGAT 138
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + + YEP
Sbjct: 139 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSIHHKENADYEP 198
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
EL PG+ Y++ P+ L IF G +
Sbjct: 199 ELHPGVTYKLKDPKATLKIFSTGSV 223
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 7/150 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L +I + EY + +G+I MK+ P TT + SGK+ GA
Sbjct: 81 NVVCSFSVRCHLNLREIALKGSNVEYR--RENGMITMKLRRPYTTASIWSSGKVTCTGAT 138
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQIN-SRVRYSEYN 155
E K+A+R+FA+ L++LG ++ F +R N++GT + + + + ++Y
Sbjct: 139 SEVQAKIAARRFARSLQKLGF-KVRFNNYRVVNVLGTCCMPFAIKITSFSIHHKENADYE 197
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ K+ +P+ T F +G + +
Sbjct: 198 PELHPGVTYKLKDPKATLKIFSTGSVTVTA 227
>gi|395646355|ref|ZP_10434215.1| TATA-box-binding protein [Methanofollis liminatans DSM 4140]
gi|395443095|gb|EJG07852.1| TATA-box-binding protein [Methanofollis liminatans DSM 4140]
Length = 186
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 18/179 (10%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL I+SR++ ++YN +F G+++++ +P+ L F SGK+++ GAK
Sbjct: 13 NIVASAKVTDSLDLPAISSRIQGADYNKKRFPGVVIRMQDPKIAALVFGSGKVVLTGAK- 71
Query: 100 EHDCKLASRKFAKILKQLG---------HPEIIFFFFRNMVGTISVGCPLDLNQI--NSR 148
+ +K L+ LG + + +N+V + +G P++LN+I
Sbjct: 72 ------SVESLSKGLEILGGKLRDLDIDIDADLTYTIQNIVTSADLGKPINLNKIAIGFN 125
Query: 149 VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+ EY P +F GL+ ++ +P+ L F SGKL+I G K D KLA RK L LG
Sbjct: 126 LDRIEYEPEQFPGLVYRLEDPKVVVLLFGSGKLIITGGKQPGDAKLAVRKIIADLSNLG 184
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 17/164 (10%)
Query: 118 GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 177
G+PE N+V + V LDL I+SR++ ++YN +F G+++++ +P+ L F
Sbjct: 3 GNPEE-SLKIENIVASAKVTDSLDLPAISSRIQGADYNKKRFPGVVIRMQDPKIAALVFG 61
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQG--------FKIHNIVCTCDVRFP 229
SGK+++ GAK + +K L+ LG ++ + I NIV + D+ P
Sbjct: 62 SGKVVLTGAK-------SVESLSKGLEILGGKLRDLDIDIDADLTYTIQNIVTSADLGKP 114
Query: 230 VKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ L+ + + YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 115 INLNKIAIGFNLDRIEYEPEQFPGLVYRLEDPKVVVLLFGSGKL 158
>gi|330507959|ref|YP_004384387.1| transcription factor TFIID [Methanosaeta concilii GP6]
gi|328928767|gb|AEB68569.1| transcription factor TFIID [Methanosaeta concilii GP6]
Length = 183
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL++I + + +EYN KF GL+ ++ PR L F SGK++ GA
Sbjct: 7 IENVVASTKLAEEFDLHKIEAELEGAEYNKEKFPGLVYRVKAPRAAFLIFTSGKVVCTGA 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--NIVCTCDVRFPVKLDALH-HVHSQFS 243
K+ D + A+ LK +G +IH NIV + D++ + L+A+ + +
Sbjct: 67 KNVEDVRTVITNMAQTLKSIGFENIDLEPEIHVQNIVASADLKTDLNLNAIALGLGLENI 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 127 EYEPEQFPGLVYRIKTPKVVVLIFSSGKL 155
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL++I + + +EYN KF GL+ ++ PR L F SGK++ GAK+
Sbjct: 9 NVVASTKLAEEFDLHKIEAELEGAEYNKEKFPGLVYRVKAPRAAFLIFTSGKVVCTGAKN 68
Query: 100 EHDCKLASRKFAKILKQLG------HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS- 152
D + A+ LK +G PEI +N+V + + L+LN I +
Sbjct: 69 VEDVRTVITNMAQTLKSIGFENIDLEPEI---HVQNIVASADLKTDLNLNAIALGLGLEN 125
Query: 153 -EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K +C+ + + L+ +G
Sbjct: 126 IEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVTGGKSPEECEEGVKIVREQLENMG 181
>gi|194891201|ref|XP_001977450.1| GG18249 [Drosophila erecta]
gi|190649099|gb|EDV46377.1| GG18249 [Drosophila erecta]
Length = 641
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 6/157 (3%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQ 177
PE+ N+V + SVGC L L I + EY + +G++ MK+ +P TT +
Sbjct: 212 EPEL-DIVINNVVCSFSVGCHLKLRDIALQGSNVEYR--RENGMVTMKLRHPYTTASIWS 268
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SG++ GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+
Sbjct: 269 SGRITCTGATSEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSE 328
Query: 238 VHSQFSSYEPELFPGLIYRM--VKPRVVLLIFVNGRI 272
H + +SYEPEL PG+ Y+M P+ L IF G +
Sbjct: 329 RHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSV 365
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SVGC L L I + EY + +G++ MK+ +P TT + SG++ GA
Sbjct: 221 NVVCSFSVGCHLKLRDIALQGSNVEYR--RENGMVTMKLRHPYTTASIWSSGRITCTGAT 278
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSE--- 153
E K+A+R++A+ L +LG P F FR N++GT S+ P + +N R+ E
Sbjct: 279 SEAMAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSM--PWAIKIVNFSERHRENAS 335
Query: 154 YNPGKFHGLI--MKILNPRTTCLAFQSGKLLILGAKHEH 190
Y P G+ M+ +P+ T F +G + + A H
Sbjct: 336 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVSH 374
>gi|386874609|ref|ZP_10116844.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807582|gb|EIJ66966.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 187
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 8/158 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DL I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 12 NVVASASVDQKIDLITITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E ++A + ++++L +I +N+V I++G + L + + S Y
Sbjct: 72 E---EMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
P +F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDV 166
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + SV +DL I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLITITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEEMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKL 155
>gi|389861732|ref|YP_006363972.1| transcription factor [Thermogladius cellulolyticus 1633]
gi|388526636|gb|AFK51834.1| transcription factor [Thermogladius cellulolyticus 1633]
Length = 210
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V T+ + +DL+ + S++ + P +F GLI ++ P+ T L F+SGK+++ G
Sbjct: 28 IENIVATVILEHGIDLDLLESKIPNITFRPDQFPGLIFRLDKPKATALIFRSGKMVVTGT 87
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFS 243
K ++ ++ +IL + H I+ G +I NIV + D+ V L+ ++ S
Sbjct: 88 KSTNELIEVVKRMIRILAR--HGIRITGKPRIQIQNIVASGDIHALVNLERAAYMLED-S 144
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RM +PRVVLLIF +G++
Sbjct: 145 MYEPEQFPGLIHRMREPRVVLLIFSSGKM 173
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+ + +DL+ + S++ + P +F GLI ++ P+ T L F+SGK+++ G K
Sbjct: 30 NIVATVILEHGIDLDLLESKIPNITFRPDQFPGLIFRLDKPKATALIFRSGKMVVTGTKS 89
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
++ ++ +IL + G P I +N+V + + ++L + + S Y
Sbjct: 90 TNELIEVVKRMIRILARHGIRITGKPRI---QIQNIVASGDIHALVNLERAAYMLEDSMY 146
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GLI ++ PR L F SGK++I GAK E + + A++K A+ L LG
Sbjct: 147 EPEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEEKEVEEAAKKIAQELTDLG 199
>gi|4741972|gb|AAD28784.1|AF136569_1 TATA box binding protein-related factor 2 [Drosophila melanogaster]
Length = 632
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 184
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 206 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 260
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 261 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 320
Query: 245 YEPELFPGLIYRM--VKPRVVLLIFVNGRI 272
YEPEL PG+ Y+M P+ L IF G +
Sbjct: 321 YEPELHPGVTYKMRDPDPKATLKIFSTGSV 350
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 206 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 260
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRY-S 152
GA E K+A+R++A+ L +LG P F FR N++GT S+ + + + R R +
Sbjct: 261 GATSESMAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 319
Query: 153 EYNPGKFHGLI--MKILNPRTTCLAFQSGKLLILGAKHEH 190
Y P G+ M+ +P+ T F +G + + A H
Sbjct: 320 SYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVNH 359
>gi|289581532|ref|YP_003479998.1| TATA-box binding family protein [Natrialba magadii ATCC 43099]
gi|336252658|ref|YP_004595765.1| TATA-box binding family protein [Halopiger xanaduensis SH-6]
gi|433589465|ref|YP_007278961.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448283054|ref|ZP_21474333.1| transcription factor [Natrialba magadii ATCC 43099]
gi|448354487|ref|ZP_21543243.1| transcription factor [Natrialba hulunbeirensis JCM 10989]
gi|448357153|ref|ZP_21545859.1| transcription factor [Natrialba chahannaoensis JCM 10990]
gi|448381388|ref|ZP_21561591.1| transcription factor [Haloterrigena thermotolerans DSM 11522]
gi|289531085|gb|ADD05436.1| TATA-box binding family protein [Natrialba magadii ATCC 43099]
gi|335336647|gb|AEH35886.1| TATA-box binding family protein [Halopiger xanaduensis SH-6]
gi|433304245|gb|AGB30057.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445574762|gb|ELY29250.1| transcription factor [Natrialba magadii ATCC 43099]
gi|445637375|gb|ELY90525.1| transcription factor [Natrialba hulunbeirensis JCM 10989]
gi|445649961|gb|ELZ02892.1| transcription factor [Natrialba chahannaoensis JCM 10990]
gi|445663196|gb|ELZ15950.1| transcription factor [Haloterrigena thermotolerans DSM 11522]
Length = 186
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEDLG 183
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPEVVALLFGSGKL 157
>gi|222481286|ref|YP_002567522.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222454662|gb|ACM58925.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + + LDL + + +E+NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIDQELDLETLVDDIPGAEFNPDNFPGLVDRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A + L++LG P+ + NIV + D+ + + L+AL + +
Sbjct: 70 ASVDDVHEALEIIFEKLRELGIPVTDSPEITVQNIVSSADLGYDLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMEDPGVVILLFGSGKI 157
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + LDL + + +E+NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 12 NVVASTGIDQELDLETLVDDIPGAEFNPDNFPGLVDRTQDPKAAALIFRSGKIVCTGAAS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A + L++LG PEI +N+V + +G L+LN I +
Sbjct: 72 VDDVHEALEIIFEKLRELGIPVTDSPEIT---VQNIVSSADLGYDLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGK++I G K D A + + LG
Sbjct: 129 EYEPEQFPGLVYRMEDPGVVILLFGSGKIVITGGKFAEDATAAVENIVEKIDDLG 183
>gi|24640580|ref|NP_511084.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45554500|ref|NP_996377.1| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
gi|17862444|gb|AAL39699.1| LD27895p [Drosophila melanogaster]
gi|22831945|gb|AAF46368.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45446857|gb|AAF46369.3| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
Length = 632
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 5/147 (3%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 187
N+V + SVGC L L +I + EY + +G++ MK+ +P TT + SG++ GA
Sbjct: 206 NVVCSFSVGCHLKLREIALQGSNVEYR--RENGMVTMKLRHPYTTASIWSSGRITCTGAT 263
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +SYEP
Sbjct: 264 SESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEP 323
Query: 248 ELFPGLIYRM--VKPRVVLLIFVNGRI 272
EL PG+ Y+M P+ L IF G +
Sbjct: 324 ELHPGVTYKMRDPDPKATLKIFSTGSV 350
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 13/159 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SVGC L L +I + EY + +G++ MK+ +P TT + SG++ GA
Sbjct: 206 NVVCSFSVGCHLKLREIALQGSNVEYR--RENGMVTMKLRHPYTTASIWSSGRITCTGAT 263
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSE--- 153
E K+A+R++A+ L +LG P F FR N++GT S+ P + +N R+ E
Sbjct: 264 SESMAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSM--PWAIKIVNFSERHRENAS 320
Query: 154 YNPGKFHGLI--MKILNPRTTCLAFQSGKLLILGAKHEH 190
Y P G+ M+ +P+ T F +G + + A H
Sbjct: 321 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVNH 359
>gi|407464492|ref|YP_006775374.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407047680|gb|AFS82432.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V +DLN+I EY+P +F GL+ ++ P+T L F SGK++ G+K
Sbjct: 12 NVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVCTGSKS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
E + A + + L++ G + +N+V +I++G + L Q + S Y P
Sbjct: 72 EEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPRSMYEPE 131
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+F GLI ++L+P+T L F SGKL+ GAK E D
Sbjct: 132 QFPGLIHRMLDPKTVILLFSSGKLVCTGAKQEPDV 166
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + V +DLN+I EY+P +F GL+ ++ P+T L F SGK++ G+K
Sbjct: 11 ENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVCTGSK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
E + A + + L++ G +K I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKL 155
>gi|383318805|ref|YP_005379646.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
gi|379320175|gb|AFC99127.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
Length = 188
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++ GAK
Sbjct: 15 NVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTGAKS 74
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D +K K + +G +PEI +N+V + +G L+LN I +
Sbjct: 75 IEDVDRGLKKVFKKIASVGIKVDPNPEIT---VQNIVASADLGSVLNLNAIAIGLGLENI 131
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P+ L F SGKL++ G K D + A + K L+ L
Sbjct: 132 EYEPEQFPGLVYRLDSPKVVVLLFGSGKLVVTGGKKPKDAEEAVERIVKELEGLA 186
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++ GA
Sbjct: 13 IENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTGA 72
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D +K K + +G + + NIV + D+ + L+A+ + +
Sbjct: 73 KSIEDVDRGLKKVFKKIASVGIKVDPNPEITVQNIVASADLGSVLNLNAIAIGLGLENIE 132
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 133 YEPEQFPGLVYRLDSPKVVVLLFGSGKL 160
>gi|429191762|ref|YP_007177440.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448325091|ref|ZP_21514490.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429135980|gb|AFZ72991.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445616448|gb|ELY70074.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 186
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVTRLEDLG 183
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPEVVALLFGSGKL 157
>gi|389847270|ref|YP_006349509.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614785|ref|ZP_21663813.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244576|gb|AFK19522.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445752872|gb|EMA04291.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 186
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A L++L P+ + + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHDALEIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P+VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPKVVILLFGSGKI 157
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A L++L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHDALEIIFDKLRELQIPVDDEPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGK++I G K D + A + + + LG
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEIVERIDALG 183
>gi|167043299|gb|ABZ08004.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW141M18]
Length = 186
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 8/158 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G K
Sbjct: 12 NVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVCTGGKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E +A + ++KQL +I +N+V + S+G + L R+ +S Y
Sbjct: 72 E---AMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPHSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
P +F GLI ++++P+T L F SGKL+ GAK E D
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDV 166
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G
Sbjct: 10 IENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVCTGG 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKL-DALHHVHSQFSS 244
K E A R K L++ IK + NIV + + + L DA + S
Sbjct: 70 KSEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRL--PHSM 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RMV P+ VLL+F +G++
Sbjct: 128 YEPEQFPGLIHRMVDPKTVLLLFASGKL 155
>gi|452205985|ref|YP_007486107.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452082085|emb|CCQ35336.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRDLEIQVDEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D K A K L++LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEELG 183
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVALLFGSGKL 157
>gi|386874579|ref|ZP_10116817.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807612|gb|EIJ66993.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + ++ LDL I + EY+P +F G + ++ +P+T L F SGK++ GAK
Sbjct: 11 VNVVASATINQRLDLVDITKKFPAVEYHPEQFPGAVFRLKSPKTATLLFGSGKMVCTGAK 70
Query: 99 HEHDCKLASRKFAKILKQLGHPEI---IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYN 155
+ + A +K ++L++ G +I +N+V +I++G + L Q + S Y
Sbjct: 71 SQELAETAVKKVVELLRK-GKVKIKSEPIVTIQNIVSSINLGGKVSLEQAARTLPRSMYE 129
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++L+P+T L F SGKL+ +GAK E D + + +L++
Sbjct: 130 PEQFPGLIHRMLDPKTVILIFSSGKLVCVGAKLEKDVHRSVNQIHSLLEE 179
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + ++ LDL I + EY+P +F G + ++ +P+T L F SGK++ GAK
Sbjct: 12 NVVASATINQRLDLVDITKKFPAVEYHPEQFPGAVFRLKSPKTATLLFGSGKMVCTGAKS 71
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
+ + A +K ++L++ IK + I NIV + ++ V L+ + S YEP
Sbjct: 72 QELAETAVKKVVELLRKGKVKIKSEPIVTIQNIVSSINLGGKVSLEQAARTLPR-SMYEP 130
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM+ P+ V+LIF +G++
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKL 155
>gi|4688680|emb|CAB41475.1| TBP-like factor [Drosophila melanogaster]
Length = 537
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 184
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 111 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 165
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 166 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 225
Query: 245 YEPELFPGLIYRM--VKPRVVLLIFVNGRI 272
YEPEL PG+ Y+M P+ L IF G +
Sbjct: 226 YEPELHPGVTYKMRDPDPKATLKIFSTGSV 255
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 111 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 165
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRY-S 152
GA E K+A+R++A+ L +LG P F FR N++GT S+ + + + R R +
Sbjct: 166 GATSESMAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 224
Query: 153 EYNPGKFHGLI--MKILNPRTTCLAFQSGKLLILGAKHEH 190
Y P G+ M+ +P+ T F +G + + A H
Sbjct: 225 SYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVNH 264
>gi|448303994|ref|ZP_21493939.1| transcription factor [Natronorubrum sulfidifaciens JCM 14089]
gi|445592081|gb|ELY46273.1| transcription factor [Natronorubrum sulfidifaciens JCM 14089]
Length = 186
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPKDAEHAVDKIVSRLEDLG 183
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPEVVALLFGSGKL 157
>gi|147920361|ref|YP_685866.1| transcription factor [Methanocella arvoryzae MRE50]
gi|110621262|emb|CAJ36540.1| TATA-box binding protein E [Methanocella arvoryzae MRE50]
Length = 188
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++ GAK
Sbjct: 15 NVVASTAIGQEIDLKSVTLALDGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTGAKS 74
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D +K K + +G +PEI +N+V + +G L+LN I +
Sbjct: 75 IEDVDRGLKKVFKKMDSVGIKVADNPEIT---VQNIVASADLGSVLNLNAIAIGLGLENI 131
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K D + A + + L+ L
Sbjct: 132 EYEPEQFPGLVYRIDQPKVVVLLFGSGKLVVTGGKKPKDAEEAVDRIVRELEGLA 186
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++ GA
Sbjct: 13 IENVVASTAIGQEIDLKSVTLALDGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTGA 72
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D +K K + +G + + NIV + D+ + L+A+ + +
Sbjct: 73 KSIEDVDRGLKKVFKKMDSVGIKVADNPEITVQNIVASADLGSVLNLNAIAIGLGLENIE 132
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+L+F +G++
Sbjct: 133 YEPEQFPGLVYRIDQPKVVVLLFGSGKL 160
>gi|237831569|ref|XP_002365082.1| TATA-box binding protein, putative [Toxoplasma gondii ME49]
gi|211962746|gb|EEA97941.1| TATA-box binding protein, putative [Toxoplasma gondii ME49]
Length = 549
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 33/225 (14%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
LDL + R++EYNP K + I+++ NP+ T L F+SG+L+I GA+ + + + A+R
Sbjct: 328 LDLRHLAISCRFAEYNPRKINACIVRLRNPKCTVLVFRSGRLIITGARSDTEAERAARLT 387
Query: 111 AKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPR 170
A++L F G S P NQ + N I +
Sbjct: 388 ARMLT-----------FAYCGG--STKAPSLENQPALALPACSEN---GTSDISERCGES 431
Query: 171 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPV 230
T C A + + L+L L + K + K + + FKI N+V + D PV
Sbjct: 432 TVCPAGPNSESLVL---------LEAEKNKRTKK-----LCLRDFKIENVVASADCGVPV 477
Query: 231 KLDALHHVHSQFSSYEPELFPGLIYR---MVKPRVVLLIFVNGRI 272
+L+ L H +FSSYEPELF GL+YR + VLL+FV+G++
Sbjct: 478 RLEGLAFEHKEFSSYEPELFSGLVYRYNPTASLKAVLLVFVSGKV 522
>gi|448335606|ref|ZP_21524747.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445616584|gb|ELY70205.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRSQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEDLG 183
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRSQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPEVVALLFGSGKL 157
>gi|432331260|ref|YP_007249403.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanoregula formicicum SMSP]
gi|432137969|gb|AGB02896.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanoregula formicicum SMSP]
Length = 186
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL + SR++ +EYN +F G+++++ +P+ L F SGK+++ GAK
Sbjct: 13 NIVASAKVTDYLDLPALASRIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGAKS 72
Query: 100 EHDCKLASRKFAKILKQL--GHPEIIFFFFRNMVGTISVGCPLDLNQINS--RVRYSEYN 155
+L++L P+ + + +N+V + + ++LN+I + EY
Sbjct: 73 IDSLSKGLNILGNLLRKLDIDIPKKLNYKIQNIVTSADLATAINLNKIAVGFNLDRIEYE 132
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ NP+ L F SGKL+I G K D K A K L+ LG
Sbjct: 133 PEQFPGLVYRLDNPKVVVLLFGSGKLIITGGKEPEDAKKAVVKILSDLRSLG 184
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDL + SR++ +EYN +F G+++++ +P+ L F SGK+++ GA
Sbjct: 11 IENIVASAKVTDYLDLPALASRIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K +L++L I K +KI NIV + D+ + L+ + +
Sbjct: 71 KSIDSLSKGLNILGNLLRKLDIDIPKKLNYKIQNIVTSADLATAINLNKIAVGFNLDRIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 131 YEPEQFPGLVYRLDNPKVVVLLFGSGKL 158
>gi|448610180|ref|ZP_21661030.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445745539|gb|ELZ97006.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +VG LDL ++ + ++Y+P F GL+ + +P+ L F+SGK++ GA
Sbjct: 13 IQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQDPKAASLIFRSGKIVCTGA 72
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A + L +LG P + I NIV + D+ + L+AL + +
Sbjct: 73 SSVDDVDRALEQVFGELSKLGIPTDDREEATIQNIVSSADLGTTLNLNALAIGLGLEDVE 132
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV+L+F +G+I
Sbjct: 133 YEPEQFPGLVYRIEDPSVVVLMFGSGKI 160
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +VG LDL ++ + ++Y+P F GL+ + +P+ L F+SGK++ GA
Sbjct: 15 NVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQDPKAASLIFRSGKIVCTGASS 74
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQ--INSRVRYSEYN 155
D A + L +LG P + +N+V + +G L+LN I + EY
Sbjct: 75 VDDVDRALEQVFGELSKLGIPTDDREEATIQNIVSSADLGTTLNLNALAIGLGLEDVEYE 134
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ +I +P L F SGK++I GAK + A + LG
Sbjct: 135 PEQFPGLVYRIEDPSVVVLMFGSGKIVITGAKQVEHAREAINVVTDEIDALG 186
>gi|16741283|gb|AAH16476.1| TATA box binding protein [Mus musculus]
gi|148688515|gb|EDL20462.1| TATA box binding protein, isoform CRA_c [Mus musculus]
Length = 260
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 70/146 (47%), Gaps = 56/146 (38%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK+
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM----- 196
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
VCT SYE
Sbjct: 197 ----------------------------------VCTGA-----------------KSYE 205
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 206 PELFPGLIYRMIKPRIVLLIFVSGKV 231
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 144 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 203
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFF 127
++ +L F ++ ++ P I+ F
Sbjct: 204 -YEPEL----FPGLIYRMIKPRIVLLIF 226
>gi|383619863|ref|ZP_09946269.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|435849205|ref|YP_007311455.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|448312598|ref|ZP_21502340.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|448315726|ref|ZP_21505366.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|448401315|ref|ZP_21571551.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|448696585|ref|ZP_21697997.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|448708683|ref|ZP_21701101.1| transcription factor [Halobiforma nitratireducens JCM 10879]
gi|433675473|gb|AGB39665.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|445601049|gb|ELY55043.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|445610861|gb|ELY64628.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445666578|gb|ELZ19237.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445783213|gb|EMA34048.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|445793090|gb|EMA43681.1| transcription factor [Halobiforma nitratireducens JCM 10879]
Length = 186
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEDLG 183
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKL 157
>gi|399574202|ref|ZP_10767962.1| tata binding protein of transcription factor tfiid [Halogranum
salarium B-1]
gi|399240710|gb|EJN61634.1| tata binding protein of transcription factor tfiid [Halogranum
salarium B-1]
Length = 186
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + NP+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQNPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHEALDIIFDKLRGLSIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKI 157
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + NP+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQNPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A L+ L P E +N+V + +G L+LN I + EY
Sbjct: 72 IDDVHEALDIIFDKLRGLSIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I G K D A + + ++ LG
Sbjct: 132 PEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDDATTAVEQIVERIENLG 183
>gi|221487067|gb|EEE25313.1| TATA-box binding protein, putative [Toxoplasma gondii GT1]
Length = 549
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 33/225 (14%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
LDL + R++EYNP K + I+++ NP+ T L F+SG+L+I GA+ + + + A+R
Sbjct: 328 LDLRHLAISCRFAEYNPRKINACIVRLRNPKCTVLVFRSGRLIITGARSDTEAERAARLT 387
Query: 111 AKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPR 170
A++L F G S P NQ + N I +
Sbjct: 388 ARMLT-----------FAYCGG--SAKAPSLENQPALALPACSEN---GTSDISERCGES 431
Query: 171 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPV 230
T C A + + L+L L + K + K + + FKI N+V + D PV
Sbjct: 432 TVCPAGPNSESLVL---------LEAEKNKRTKK-----LCLRDFKIENVVASADCGVPV 477
Query: 231 KLDALHHVHSQFSSYEPELFPGLIYR---MVKPRVVLLIFVNGRI 272
+L+ L H +FSSYEPELF GL+YR + VLL+FV+G++
Sbjct: 478 RLEGLAFEHKEFSSYEPELFSGLVYRYNPTASLKAVLLVFVSGKV 522
>gi|149047098|gb|EDL99818.1| TATA box binding protein, isoform CRA_b [Rattus norvegicus]
Length = 262
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 70/146 (47%), Gaps = 56/146 (38%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK+
Sbjct: 144 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM----- 198
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
VCT SYE
Sbjct: 199 ----------------------------------VCTGA-----------------KSYE 207
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 208 PELFPGLIYRMIKPRIVLLIFVSGKV 233
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 146 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 205
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFF 127
++ +L F ++ ++ P I+ F
Sbjct: 206 -YEPEL----FPGLIYRMIKPRIVLLIF 228
>gi|448608858|ref|ZP_21660137.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445747235|gb|ELZ98691.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 186
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A L++L P+ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHDALGIIFDKLRELQIPVDDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM KP+VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDKPKVVILLFGSGKI 157
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A L++L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHDALGIIFDKLRELQIPVDDDPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGK++I G K D A + + + LG
Sbjct: 129 EYEPEQFPGLVYRMDKPKVVILLFGSGKIVITGGKQTDDAATAVEEIVERIDALG 183
>gi|389847604|ref|YP_006349843.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448617457|ref|ZP_21666044.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244910|gb|AFK19856.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445748377|gb|ELZ99824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +VG LDL ++ + ++Y+P F GL+ + P+ L F+SGK++ GA
Sbjct: 12 IQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQEPKAASLIFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D A + L +LG P + + I NIV + D+ + L+AL + +
Sbjct: 72 SSVDDVDRALEQVFGELSKLGIPTEDREEATIQNIVSSADLGTTLNLNALAIGLGLEDVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRIDEPSVVVLMFGSGKI 159
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +VG LDL ++ + ++Y+P F GL+ + P+ L F+SGK++ GA
Sbjct: 14 NVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQEPKAASLIFRSGKIVCTGASS 73
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A + L +LG P + +N+V + +G L+LN I + EY
Sbjct: 74 VDDVDRALEQVFGELSKLGIPTEDREEATIQNIVSSADLGTTLNLNALAIGLGLEDVEYE 133
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ +I P L F SGK++I GAK + A + LG
Sbjct: 134 PEQFPGLVYRIDEPSVVVLMFGSGKIVITGAKQVEHAREAINVVTDEIDSLG 185
>gi|282162800|ref|YP_003355185.1| TATA-box-binding protein [Methanocella paludicola SANAE]
gi|282155114|dbj|BAI60202.1| TATA-box-binding protein [Methanocella paludicola SANAE]
Length = 188
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++ GAK
Sbjct: 15 NVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTGAKS 74
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D +K K + +G +PEI +N+V + +G L+LN I +
Sbjct: 75 IEDVDRGLKKVFKKMDSVGIKVDQNPEIT---VQNIVASADLGSVLNLNAIAIGLGLENI 131
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P+ L F SGKL++ G K D + A + K L+ L
Sbjct: 132 EYEPEQFPGLVYRLDHPKVVVLLFGSGKLVVTGGKKPKDAEEAVDRIVKELEGLA 186
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++ GA
Sbjct: 13 IENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTGA 72
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D +K K + +G + + NIV + D+ + L+A+ + +
Sbjct: 73 KSIEDVDRGLKKVFKKMDSVGIKVDQNPEITVQNIVASADLGSVLNLNAIAIGLGLENIE 132
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 133 YEPEQFPGLVYRLDHPKVVVLLFGSGKL 160
>gi|146304491|ref|YP_001191807.1| transcription factor [Metallosphaera sedula DSM 5348]
gi|145702741|gb|ABP95883.1| TATA binding protein of transcription factor TFIID [Metallosphaera
sedula DSM 5348]
Length = 176
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++
Sbjct: 5 LDLYAMERSVPNVEYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRI 64
Query: 200 AKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYR 256
K L++ G I+ G +I NIV + ++ V LD + + YEPE FPGLI+R
Sbjct: 65 IKSLRRYG--IRIGGKPKIQIQNIVASANMHVHVNLDKAAFLLEN-NMYEPEQFPGLIFR 121
Query: 257 MVKPRVVLLIFVNGRI 272
M +PRVVLLIF +G++
Sbjct: 122 MDEPRVVLLIFSSGKM 137
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++
Sbjct: 5 LDLYAMERSVPNVEYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRI 64
Query: 111 AKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMK 165
K L++ G P+I +N+V + ++ ++L++ + + Y P +F GLI +
Sbjct: 65 IKSLRRYGIRIGGKPKI---QIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFR 121
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+ PR L F SGK++I GAK E + A +K L++L
Sbjct: 122 MDEPRVVLLIFSSGKMVITGAKREDEVYKAVKKIFDKLEELD 163
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQK-----NRRGTNL---------NMVGTISV 47
S K +L + G + G ++ LI+ ++ R G + N+V + ++
Sbjct: 33 SPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYGIRIGGKPKIQIQNIVASANM 92
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
++L++ + + Y P +F GLI ++ PR L F SGK++I GAK E + A
Sbjct: 93 HVHVNLDKAAFLLENNMYEPEQFPGLIFRMDEPRVVLLIFSSGKMVITGAKREDEVYKAV 152
Query: 108 RKFAKILKQLG 118
+K L++L
Sbjct: 153 KKIFDKLEELD 163
>gi|124506045|ref|XP_001351620.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
gi|23504547|emb|CAD51427.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
Length = 327
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 12/152 (7%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N++ + ++ ++L + +R +EYNP K + LI+++ P+ T L F++G++++ G +
Sbjct: 153 NIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTGTRT 212
Query: 189 EHD----CKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
+ D CK ++ + K +K+ FKI NI+ + + P++L+ L H H ++ +
Sbjct: 213 KKDSIMGCKKIAKIIKIVTKD---KVKFCNFKIENIIASANCNIPIRLEVLAHDHKEYCN 269
Query: 245 YEPELFPGLIYRMVKP----RVVLLIFVNGRI 272
YEPELF GL+YR KP + V+LIFV+G+I
Sbjct: 270 YEPELFAGLVYRY-KPTSNLKSVILIFVSGKI 300
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N++ + ++ ++L + +R +EYNP K + LI+++ P+ T L F++G++++ G +
Sbjct: 153 NIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTGTRT 212
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF--FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNP 156
+ D + +K AKI+K + ++ F F N++ + + P+ L + + Y Y P
Sbjct: 213 KKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHKEYCNYEP 272
Query: 157 GKFHGLIMK---ILNPRTTCLAFQSGKLLILGAK 187
F GL+ + N ++ L F SGK++I G K
Sbjct: 273 ELFAGLVYRYKPTSNLKSVILIFVSGKIIITGCK 306
>gi|310752315|gb|ADP09476.1| TATA-box binding protein [uncultured marine crenarchaeote E48-1C]
Length = 186
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++ +DLN + EY P +F GL+ ++ P+T L F SGK++ GA
Sbjct: 10 IENVVASATLNQKVDLNAVVKSYPIVEYRPEQFPGLVFRLKRPKTATLIFNSGKMVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K E + + A +K K LK+ G I + KI NIV + ++ + L+A + + + Y
Sbjct: 70 KSEKEARRAVKKVIKELKKGGIIIIGKPELKIQNIVASANLGGMIDLEA-STLSLKKTMY 128
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLIYRM +P+VV+L+F +G++
Sbjct: 129 EPEQFPGLIYRMAEPKVVILLFASGKL 155
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ +DLN + EY P +F GL+ ++ P+T L F SGK++ GAK
Sbjct: 12 NVVASATLNQKVDLNAVVKSYPIVEYRPEQFPGLVFRLKRPKTATLIFNSGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKIL-----KQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E + + A +K K L +G PE+ +N+V + ++G +DL ++ + Y
Sbjct: 72 EKEARRAVKKVIKELKKGGIIIIGKPEL---KIQNIVASANLGGMIDLEASTLSLKKTMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
P +F GLI ++ P+ L F SGKL+ GAK E +
Sbjct: 129 EPEQFPGLIYRMAEPKVVILLFASGKLVCTGAKREQNV 166
>gi|91773461|ref|YP_566153.1| transcription factor [Methanococcoides burtonii DSM 6242]
gi|91712476|gb|ABE52403.1| TATA-box binding protein [Methanococcoides burtonii DSM 6242]
Length = 206
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Query: 105 LASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIM 164
+AS + A+ K + I N+V + + DL +I + +EYN KF GL+
Sbjct: 12 VASTELAEESKNMSEYNI---KIENVVASTKLAEEFDLIKIEAEFEGAEYNKQKFPGLVY 68
Query: 165 KILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCT 223
++ +P+ L F SGK++ GAK+ D + AK L +G I + NIV +
Sbjct: 69 RVTDPKAAFLVFTSGKVVCTGAKNVADVHIVIGNMAKKLNGIGIETIADPEITVQNIVAS 128
Query: 224 CDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
D+ + L+A+ + + YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 129 ADLHATLNLNAIAIGLGLENIEYEPEQFPGLVYRIADPKVVVLIFSSGKL 178
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL +I + +EYN KF GL+ ++ +P+ L F SGK++ GAK+
Sbjct: 33 NVVASTKLAEEFDLIKIEAEFEGAEYNKQKFPGLVYRVTDPKAAFLVFTSGKVVCTGAKN 92
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + AK L +G PEI +N+V + + L+LN I +
Sbjct: 93 VADVHIVIGNMAKKLNGIGIETIADPEIT---VQNIVASADLHATLNLNAIAIGLGLENI 149
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I +P+ L F SGKL++ G K C + L +G
Sbjct: 150 EYEPEQFPGLVYRIADPKVVVLIFSSGKLVVTGGKSPAHCDQGVEVVRQQLDNMG 204
>gi|55377538|ref|YP_135388.1| transcription factor [Haloarcula marismortui ATCC 43049]
gi|344211616|ref|YP_004795936.1| transcription factor/TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|448630604|ref|ZP_21673184.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|448639975|ref|ZP_21677123.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|448659470|ref|ZP_21683325.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|448666852|ref|ZP_21685497.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|448678006|ref|ZP_21689196.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|448688547|ref|ZP_21694349.1| transcription factor [Haloarcula japonica DSM 6131]
gi|74571974|sp|Q5V470.1|TBP_HALMA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|55230263|gb|AAV45682.1| TATA-box binding protein E [Haloarcula marismortui ATCC 43049]
gi|343782971|gb|AEM56948.1| transcription factor / TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|445755637|gb|EMA07020.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|445760411|gb|EMA11674.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|445762502|gb|EMA13723.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|445771983|gb|EMA23039.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|445773681|gb|EMA24714.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|445779213|gb|EMA30150.1| transcription factor [Haloarcula japonica DSM 6131]
Length = 186
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLESVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHQSLRIVFDKLRDLNIQVDDDPEIV---VQNIVSSADLGSSLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL++ G K + D + A + L LG
Sbjct: 129 EYEPEQFPGLVYRLDEPDVVALLFGSGKLVVTGGKRKEDAEEAVDTIVERLSDLG 183
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLESVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVSSADLGSSLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPDVVALLFGSGKL 157
>gi|355572992|ref|ZP_09043960.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
gi|354824004|gb|EHF08263.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
Length = 186
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL + S+++ +EYN +F G+++++ P+ L F SGK+++ GAK
Sbjct: 13 NIVASAKVTDYLDLPALASQIKDAEYNKKRFPGVVIRMQQPKIAALVFGSGKVVLTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINS--RVRYSEYN 155
+L+ L P+ + + +N+V + +G ++LN+I + EY
Sbjct: 73 IESLSQGLEILGNLLRGLNIDIPKKLTYKIQNIVTSADLGSGINLNKIAVGFNLDRIEYE 132
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ NP+ L F SGKL+I G K D + A +K LK LG
Sbjct: 133 PEQFPGLVYRLENPKVVVLLFGSGKLIITGGKEPEDARKAVQKILTDLKNLG 184
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDL + S+++ +EYN +F G+++++ P+ L F SGK+++ GA
Sbjct: 11 IENIVASAKVTDYLDLPALASQIKDAEYNKKRFPGVVIRMQQPKIAALVFGSGKVVLTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K +L+ L I K +KI NIV + D+ + L+ + +
Sbjct: 71 KSIESLSQGLEILGNLLRGLNIDIPKKLTYKIQNIVTSADLGSGINLNKIAVGFNLDRIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 131 YEPEQFPGLVYRLENPKVVVLLFGSGKL 158
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 8 LKYGIGSACIGGGQACFCLIRGGQ---KNRRGTNL-----------NMVGTISVGCPLDL 53
L +G G + G ++ L +G + RG N+ N+V + +G ++L
Sbjct: 58 LVFGSGKVVLTGAKSIESLSQGLEILGNLLRGLNIDIPKKLTYKIQNIVTSADLGSGINL 117
Query: 54 NQINS--RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFA 111
N+I + EY P +F GL+ ++ NP+ L F SGKL+I G K D + A +K
Sbjct: 118 NKIAVGFNLDRIEYEPEQFPGLVYRLENPKVVVLLFGSGKLIITGGKEPEDARKAVQKIL 177
Query: 112 KILKQLG 118
LK LG
Sbjct: 178 TDLKNLG 184
>gi|290558963|gb|EFD92347.1| TATA-box binding family protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 180
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V +IS+ + LN++ ++ ++YNP +F GL+ + + T L F SGKL+ G +
Sbjct: 11 NVVASISLRVQIPLNKL-KKLPNTKYNPEQFPGLVFRFPDIHVTFLVFGSGKLVCTGGRS 69
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF-----FFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ D KLA K+LK+L I +N+V + ++ LDLN+I + +EY
Sbjct: 70 KEDIKLA---MTKLLKELKKINITVKSEWKIEIQNIVASGNLNKSLDLNKIAYNIDETEY 126
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
NP +F GL+ KI+N + T L F +GK++ GAK+ + A + K +K+ G+
Sbjct: 127 NPEQFPGLVYKIVNSKITFLLFGTGKIVCTGAKNVEEIDEAIKVLIKAIKKAGN 180
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V +IS+ + LN++ ++ ++YNP +F GL+ + + T L F SGKL+ G +
Sbjct: 10 ENVVASISLRVQIPLNKL-KKLPNTKYNPEQFPGLVFRFPDIHVTFLVFGSGKLVCTGGR 68
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ D KLA K K LK++ +K + +I NIV + ++ + L+ + + + + Y
Sbjct: 69 SKEDIKLAMTKLLKELKKINITVKSEWKIEIQNIVASGNLNKSLDLNKIAYNIDE-TEYN 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL+Y++V ++ L+F G+I
Sbjct: 128 PEQFPGLVYKIVNSKITFLLFGTGKI 153
>gi|448576280|ref|ZP_21642323.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448591579|ref|ZP_21651067.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445729960|gb|ELZ81554.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445733553|gb|ELZ85122.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 186
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A L++L P+ + + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHEALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P+VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPKVVILLFGSGKI 157
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A L++L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHEALGIIFDKLRELKIPVDDEPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGK++I G K D + A + + + LG
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEIVERIDALG 183
>gi|332797079|ref|YP_004458579.1| TATA-like box binding protein, TBP [Acidianus hospitalis W1]
gi|332694814|gb|AEE94281.1| archaeal TATA-like box binding protein, TBP [Acidianus hospitalis
W1]
Length = 167
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 212
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K LK+ G IK
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKYG--IKI 66
Query: 213 QG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
G +I NIV + ++ V LD + + YEPE FPGLI+RM PRVVLLIF +
Sbjct: 67 TGKPKIQIQNIVASANMHVHVNLDKAAFLLEN-NMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 270 GRI 272
G++
Sbjct: 126 GKM 128
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 8/149 (5%)
Query: 64 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ-----LG 118
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K LK+ G
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKYGIKITG 68
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
P+I +N+V + ++ ++L++ + + Y P +F GLI ++ +PR L F S
Sbjct: 69 KPKI---QIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLG 207
GK++I GAK E + A +K L +L
Sbjct: 126 GKMVITGAKREEEVYKAVKKIFDKLNELD 154
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQK-----NRRGTNL---------NMVGTISV 47
S K +L + G + G ++ LI+ ++ + G + N+V + ++
Sbjct: 24 SPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKYGIKITGKPKIQIQNIVASANM 83
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
++L++ + + Y P +F GLI ++ +PR L F SGK++I GAK E + A
Sbjct: 84 HVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREEEVYKAV 143
Query: 108 RKFAKILKQLG 118
+K L +L
Sbjct: 144 KKIFDKLNELD 154
>gi|257052326|ref|YP_003130159.1| transcription factor [Halorhabdus utahensis DSM 12940]
gi|256691089|gb|ACV11426.1| TATA-box binding family protein [Halorhabdus utahensis DSM 12940]
Length = 186
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFGKLRDLEIQVDEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D K A K L++LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEELG 183
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFGKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVALLFGSGKL 157
>gi|70607094|ref|YP_255964.1| transcription factor [Sulfolobus acidocaldarius DSM 639]
gi|68567742|gb|AAY80671.1| TATA-binding protein [Sulfolobus acidocaldarius DSM 639]
Length = 166
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 212
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K LK+ G +
Sbjct: 9 EYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTG 68
Query: 213 Q-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 271
+ +I NIV + ++ V LD + + YEPE FPGLIYRM +PRVVLLIF +G+
Sbjct: 69 KPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPGLIYRMDEPRVVLLIFSSGK 127
Query: 272 I 272
+
Sbjct: 128 M 128
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 8/149 (5%)
Query: 64 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ-----LG 118
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K LK+ G
Sbjct: 9 EYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTG 68
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
P+I +N+V + ++ ++L++ + + Y P +F GLI ++ PR L F S
Sbjct: 69 KPKI---QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSS 125
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLG 207
GK++I GAK E + A +K L +L
Sbjct: 126 GKMVITGAKREDEVHKAVKKIFDKLVELD 154
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQK-----NRRGTNL---------NMVGTISV 47
S K +L + G + G ++ LI+ ++ + G L N+V + ++
Sbjct: 24 SPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANL 83
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
++L++ + + Y P +F GLI ++ PR L F SGK++I GAK E + A
Sbjct: 84 HVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAV 143
Query: 108 RKFAKILKQLG 118
+K L +L
Sbjct: 144 KKIFDKLVELD 154
>gi|76801184|ref|YP_326192.1| transcription factor [Natronomonas pharaonis DSM 2160]
gi|121696850|sp|Q3ITB1.1|TBP_NATPD RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|76557049|emb|CAI48623.1| TATA-binding transcription initiation factor [Natronomonas
pharaonis DSM 2160]
Length = 187
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRDLEIQVDEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A K L++LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAREAVDKIVSRLEELG 183
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVALLFGSGKL 157
>gi|322368133|ref|ZP_08042702.1| TATA-box binding family protein [Haladaptatus paucihalophilus
DX253]
gi|320552149|gb|EFW93794.1| TATA-box binding family protein [Haladaptatus paucihalophilus
DX253]
Length = 186
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TADVHESLEIVFDKLRELNIQVNDDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A K L++LG
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEQAVDKIVSRLEELG 183
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTADVHESLEIVFDKLRELNIQVNDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKL 157
>gi|448604603|ref|ZP_21657770.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448624485|ref|ZP_21670433.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445744012|gb|ELZ95492.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445749690|gb|EMA01132.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 186
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A L++L P+ + + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHDALGIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P+VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPKVVILLFGSGKI 157
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A L++L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHDALGIIFDKLRELQIPVDDEPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGK++I G K D + A + + + LG
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEIVERIDALG 183
>gi|292655873|ref|YP_003535770.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433422047|ref|ZP_20405902.1| transcription factor [Haloferax sp. BAB2207]
gi|448289862|ref|ZP_21481024.1| transcription factor [Haloferax volcanii DS2]
gi|448539630|ref|ZP_21623096.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448555929|ref|ZP_21631787.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448562556|ref|ZP_21635514.1| transcription factor [Haloferax prahovense DSM 18310]
gi|448570482|ref|ZP_21639312.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448585086|ref|ZP_21647695.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|448595442|ref|ZP_21653145.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595861|sp|D4H071.1|TBP2_HALVD RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|291372685|gb|ADE04912.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432198733|gb|ELK54984.1| transcription factor [Haloferax sp. BAB2207]
gi|445581044|gb|ELY35408.1| transcription factor [Haloferax volcanii DS2]
gi|445710372|gb|ELZ62187.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445717214|gb|ELZ68934.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718874|gb|ELZ70558.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445723129|gb|ELZ74776.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445727425|gb|ELZ79038.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445742896|gb|ELZ94386.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 186
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A L++L P+ + + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHDALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P+VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPKVVILLFGSGKI 157
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A L++L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHDALGIIFDKLRELKIPVDDEPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGK++I G K D + A + + + LG
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEIVERIDALG 183
>gi|448302231|ref|ZP_21492214.1| transcription factor [Natronorubrum tibetense GA33]
gi|445581890|gb|ELY36238.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPVDAEHAVDKIVSRLEDLG 183
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPEVVALLFGSGKL 157
>gi|448406902|ref|ZP_21573334.1| transcription factor [Halosimplex carlsbadense 2-9-1]
gi|445676708|gb|ELZ29225.1| transcription factor [Halosimplex carlsbadense 2-9-1]
Length = 186
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRDLNIQVDDDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKQPEDAEEAVDKIVSRLEDLG 183
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVALLFGSGKL 157
>gi|284163428|ref|YP_003401707.1| TATA-box binding family protein [Haloterrigena turkmenica DSM 5511]
gi|448307952|ref|ZP_21497838.1| transcription factor [Natronorubrum bangense JCM 10635]
gi|448320837|ref|ZP_21510322.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|448330303|ref|ZP_21519586.1| transcription factor [Natrinema versiforme JCM 10478]
gi|448351218|ref|ZP_21540027.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|448364173|ref|ZP_21552767.1| transcription factor [Natrialba asiatica DSM 12278]
gi|448367160|ref|ZP_21555008.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|448388559|ref|ZP_21565334.1| transcription factor [Haloterrigena salina JCM 13891]
gi|284013083|gb|ADB59034.1| TATA-box binding family protein [Haloterrigena turkmenica DSM 5511]
gi|445594922|gb|ELY49056.1| transcription factor [Natronorubrum bangense JCM 10635]
gi|445605264|gb|ELY59194.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445611982|gb|ELY65723.1| transcription factor [Natrinema versiforme JCM 10478]
gi|445634902|gb|ELY88076.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|445645061|gb|ELY98068.1| transcription factor [Natrialba asiatica DSM 12278]
gi|445653644|gb|ELZ06513.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|445670314|gb|ELZ22917.1| transcription factor [Haloterrigena salina JCM 13891]
Length = 186
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPKDAEHAVDKIVSRLEDLG 183
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKL 157
>gi|167045405|gb|ABZ10060.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_APKG10F15]
Length = 186
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G K
Sbjct: 12 NVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVCTGGKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E +A + ++KQL +I +N+V + S+G + L R+ S Y
Sbjct: 72 E---AMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
P +F GLI ++++P+T L F SGKL+ GAK E D
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDV 166
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G
Sbjct: 10 IENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVCTGG 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKL-DALHHVHSQFSS 244
K E A R K L++ IK + NIV + + + L DA + S
Sbjct: 70 KSEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPR--SM 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RMV P+ VLL+F +G++
Sbjct: 128 YEPEQFPGLIHRMVDPKTVLLLFASGKL 155
>gi|354609688|ref|ZP_09027644.1| TATA-box-binding protein [Halobacterium sp. DL1]
gi|353194508|gb|EHB60010.1| TATA-box-binding protein [Halobacterium sp. DL1]
Length = 186
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRDLSIKVEDEPEIV---VQNIVTSADLGRQLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A K L++LG
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEELG 183
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 11 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAK 70
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 245
D + R L+ L ++ + + NIV + D+ + L+A+ + + Y
Sbjct: 71 STDDVHESLRIVFDKLRDLSIKVEDEPEIVVQNIVTSADLGRQLNLNAIAIGLGLENIEY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGL+YR+ +P VV L+F +G++
Sbjct: 131 EPEQFPGLVYRLDEPEVVALLFGSGKL 157
>gi|223478548|ref|YP_002582873.1| TATA-box binding protein [Thermococcus sp. AM4]
gi|214033774|gb|EEB74600.1| TATA-box binding protein [Thermococcus sp. AM4]
Length = 192
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAELNLEKVIEICPNSKYNPEEFPGIICRFEDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILK-QLGH-----PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
D + A +K ++LK ++G P+I +NMV + +G +L+ + + E
Sbjct: 73 VEDIERAVKKLTEMLKTKVGTKFTRPPQI---DIQNMVFSGDIGMEFNLDAVALSLPNCE 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P +F G+I + +P+ L F SGK++ GAK E D A +K + L++ G
Sbjct: 130 YEPEQFPGVIYRAKDPKAVILLFSSGKIVCSGAKSEKDAWEAVKKLLRELEKYG 183
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAELNLEKVIEICPNSKYNPEEFPGIICRFEDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILK-QLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
K D + A +K ++LK ++G + I N+V + D+ LDA+ +
Sbjct: 71 KSVEDIERAVKKLTEMLKTKVGTKFTRPPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNCE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPG+IYR P+ V+L+F +G+I
Sbjct: 130 YEPEQFPGVIYRAKDPKAVILLFSSGKI 157
>gi|167044379|gb|ABZ09056.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_APKG6D3]
Length = 186
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G K
Sbjct: 12 NVVASASVDQAIDLKDVTKKFPETEWHPEQFPGLVFRLKSPKTATLIFRSGKMVCTGGKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI-----IFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E +A + ++KQL +I +N+V + S+G + L R+ S Y
Sbjct: 72 E---AMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
P +F GLI ++++P+T L F SGKL+ GAK E D
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDV 166
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G
Sbjct: 10 IENVVASASVDQAIDLKDVTKKFPETEWHPEQFPGLVFRLKSPKTATLIFRSGKMVCTGG 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKL-DALHHVHSQFSS 244
K E A R K L++ IK + NIV + + + L DA + S
Sbjct: 70 KSEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPR--SM 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLI+RMV P+ VLL+F +G++
Sbjct: 128 YEPEQFPGLIHRMVDPKTVLLLFASGKL 155
>gi|336477906|ref|YP_004617047.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
gi|335931287|gb|AEH61828.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
Length = 183
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL +I +EYN KF GL+ ++ +P+ L F SGK++ GA
Sbjct: 8 IENVVASTKLAESFDLTKIEMEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D + A+ L +G ++ + NIV + D+ + L+A+ + +
Sbjct: 68 KNVEDVHTVIKNMARKLNSIGVETVEDPDITVQNIVASADLHAILNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKL 155
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL +I +EYN KF GL+ ++ +P+ L F SGK++ GAK+
Sbjct: 10 NVVASTKLAESFDLTKIEMEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGAKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + A+ L +G P+I +N+V + + L+LN I +
Sbjct: 70 VEDVHTVIKNMARKLNSIGVETVEDPDIT---VQNIVASADLHAILNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K DC++ + L +G
Sbjct: 127 EYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKSPEDCEMGVEVVRQQLDSMG 181
>gi|410670721|ref|YP_006923092.1| TATA box binding protein [Methanolobus psychrophilus R15]
gi|409169849|gb|AFV23724.1| TATA box binding protein [Methanolobus psychrophilus R15]
Length = 183
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL +I + +EYN KF GL+ ++ +P+ L F SGK++ GA
Sbjct: 8 IENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D AK L +G I+ + NIV + D++ + L+A+ + +
Sbjct: 68 KNVADVHTVIGNMAKKLNGIGIKTIEKPEITVQNIVASADLQAVLNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIEDPKVVVLIFSSGKL 155
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL +I + +EYN KF GL+ ++ +P+ L F SGK++ GAK+
Sbjct: 10 NVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGAKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D AK L +G PEI +N+V + + L+LN I +
Sbjct: 70 VADVHTVIGNMAKKLNGIGIKTIEKPEIT---VQNIVASADLQAVLNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I +P+ L F SGKL++ G K +C+ + L +G
Sbjct: 127 EYEPEQFPGLVYRIEDPKVVVLIFSSGKLVVTGGKSPENCEQGVEVVRQQLDSMG 181
>gi|345004914|ref|YP_004807767.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344320540|gb|AEN05394.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A + L+ L P++ + + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHDALAIIFQKLRDLTIPVEEEPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDDPDVVILLFGSGKI 157
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A + L+ L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHDALAIIFQKLRDLTIPVEEEPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGK++I G K D + A K + ++ LG
Sbjct: 129 EYEPEQFPGLVYRMDDPDVVILLFGSGKIVITGGKQVQDAQEAVEKIVERIEGLG 183
>gi|195480136|ref|XP_002101150.1| GE15780 [Drosophila yakuba]
gi|194188674|gb|EDX02258.1| GE15780 [Drosophila yakuba]
Length = 1872
Score = 93.2 bits (230), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 11/150 (7%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 184
N+V + SVGC L L I S V + N G++ MK+ +P TT + SG++
Sbjct: 1447 NVVCSFSVGCHLKLRDIALQGSNVEFRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1501
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 1502 GATSEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1561
Query: 245 YEPELFPGLIYRM--VKPRVVLLIFVNGRI 272
YEPEL PG+ Y+M P+ L IF G +
Sbjct: 1562 YEPELHPGVTYKMRDPDPKATLKIFSTGSV 1591
Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 19/162 (11%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SVGC L L I S V + N G++ MK+ +P TT + SG++
Sbjct: 1447 NVVCSFSVGCHLKLRDIALQGSNVEFRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1501
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSE 153
GA E K+A+R++A+ L +LG P F FR N++GT S+ P + +N R+ E
Sbjct: 1502 GATSEAMAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSM--PWAIKIVNFSERHRE 1558
Query: 154 ---YNPGKFHGLIMKIL--NPRTTCLAFQSGKLLILGAKHEH 190
Y P G+ K+ +P+ T F +G + + A H
Sbjct: 1559 NASYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVSH 1600
>gi|448620717|ref|ZP_21667964.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445756678|gb|EMA08044.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + ++G LDL +++ V +E+NP F GL+ + P+ L F+SGK++ GA
Sbjct: 12 IQNVVASSAIGQELDLESLSNDVTGAEFNPDNFPGLVYRTQEPKAANLIFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKY-QGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
A + + L LG PI + + NIV + D+ + L+AL + +
Sbjct: 72 SSIDGVNRALDQVFEELGSLGIPIDNREEATVQNIVSSADLGTTLNLNALAIGLGLENVE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV+L+F +G+I
Sbjct: 132 YEPEQFPGLVYRIDEPNVVVLLFGSGKI 159
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G LDL +++ V +E+NP F GL+ + P+ L F+SGK++ GA
Sbjct: 14 NVVASSAIGQELDLESLSNDVTGAEFNPDNFPGLVYRTQEPKAANLIFRSGKIVCTGASS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIF-----FFFRNMVGTISVGCPLDLN--QINSRVRYS 152
+R ++ ++LG I +N+V + +G L+LN I +
Sbjct: 74 ---IDGVNRALDQVFEELGSLGIPIDNREEATVQNIVSSADLGTTLNLNALAIGLGLENV 130
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P L F SGK++I GAK + A + + + LG
Sbjct: 131 EYEPEQFPGLVYRIDEPNVVVLLFGSGKIVITGAKKVEFAREAIQVVSDEIDSLG 185
>gi|433637530|ref|YP_007283290.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Halovivax ruber XH-70]
gi|448375336|ref|ZP_21558902.1| transcription factor [Halovivax asiaticus JCM 14624]
gi|433289334|gb|AGB15157.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Halovivax ruber XH-70]
gi|445658890|gb|ELZ11703.1| transcription factor [Halovivax asiaticus JCM 14624]
Length = 186
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKRPVDAEHAVDKIVSRLEDLG 183
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKL 157
>gi|443686931|gb|ELT90049.1| hypothetical protein CAPTEDRAFT_75203, partial [Capitella teleta]
Length = 196
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 122 IIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGK 180
I+ N+V + S C L+L +I + Y P +G++ MK+ P TT + SG
Sbjct: 21 ILDIVINNVVCSFSTRCHLNLKRIAREGNHVIYKPE--NGMVSMKLRKPYTTANIWSSGS 78
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+ G+ E D K+A+R++ +IL+++G +++ +++ N++ TC + F +++ H
Sbjct: 79 ITATGSTSEVDAKIAARRYCRILQKMGFRVRFGRYRVVNVLGTCSLPFGIRISQFAQDHH 138
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ SYEPEL PG Y M++PR L +F G I
Sbjct: 139 KQCSYEPELHPGATYTMMEPRATLKLFTTGSI 170
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + S C L+L +I + Y P +G++ MK+ P TT + SG + G+
Sbjct: 28 NVVCSFSTRCHLNLKRIAREGNHVIYKPE--NGMVSMKLRKPYTTANIWSSGSITATGST 85
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQI-NSRVRYSEYN 155
E D K+A+R++ +IL+++G + F +R N++GT S+ + ++Q + Y
Sbjct: 86 SEVDAKIAARRYCRILQKMGF-RVRFGRYRVVNVLGTCSLPFGIRISQFAQDHHKQCSYE 144
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
P G ++ PR T F +G + + + E + KLA
Sbjct: 145 PELHPGATYTMMEPRATLKLFTTGSITVTAPRVE-NVKLA 183
>gi|386001066|ref|YP_005919365.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
gi|357209122|gb|AET63742.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
Length = 183
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL +I + + +EYN KF GL+ ++ +PR L F SGK++ GA
Sbjct: 7 IENVVASTKLAEEFDLIKIEAELEGAEYNKEKFPGLVYRVKSPRAAFLIFTSGKVVCTGA 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--NIVCTCDVRFPVKLDALH-HVHSQFS 243
K+ D + A+ LK +G +IH NIV + D++ + +A+ + +
Sbjct: 67 KNVEDVRTVITNMAQTLKSIGFEDVNLDPEIHVQNIVASADLKTDLNPNAIALGLGLENI 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 127 EYEPEQFPGLVYRIKTPKVVVLIFSSGKL 155
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL +I + + +EYN KF GL+ ++ +PR L F SGK++ GAK+
Sbjct: 9 NVVASTKLAEEFDLIKIEAELEGAEYNKEKFPGLVYRVKSPRAAFLIFTSGKVVCTGAKN 68
Query: 100 EHDCKLASRKFAKILKQLG------HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS- 152
D + A+ LK +G PEI +N+V + + L+ N I +
Sbjct: 69 VEDVRTVITNMAQTLKSIGFEDVNLDPEI---HVQNIVASADLKTDLNPNAIALGLGLEN 125
Query: 153 -EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K +C+ + L+ LG
Sbjct: 126 IEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVTGGKSPEECEEGVKIVRVQLENLG 181
>gi|397772369|ref|YP_006539915.1| TATA-box binding family protein [Natrinema sp. J7-2]
gi|448342237|ref|ZP_21531189.1| transcription factor [Natrinema gari JCM 14663]
gi|448346767|ref|ZP_21535649.1| transcription factor [Natrinema altunense JCM 12890]
gi|397681462|gb|AFO55839.1| TATA-box binding family protein [Natrinema sp. J7-2]
gi|445626228|gb|ELY79577.1| transcription factor [Natrinema gari JCM 14663]
gi|445632029|gb|ELY85252.1| transcription factor [Natrinema altunense JCM 12890]
Length = 186
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + R L++L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLRIVFDKLRELQIQVNEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPVDAEHAVDKIVSRLEDLG 183
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKL 157
>gi|408381757|ref|ZP_11179305.1| transcription factor [Methanobacterium formicicum DSM 3637]
gi|407815688|gb|EKF86258.1| transcription factor [Methanobacterium formicicum DSM 3637]
Length = 181
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + ++G +DL Q+ + EYN +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 9 ENIVASATLGKSVDLPQVAPALEGVEYNLEQFPGLVYKLKEPKTAALIFGSGKLVCTGAK 68
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ K A ++ L I ++ K+ NIV + ++ + L+A+ + + + YE
Sbjct: 69 SIENSKKAIHIAVDKMRTLDPDIPHEFEIKVQNIVASANLDKTLNLEAVA-LDLENTEYE 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL+YR+ P+VVLL+F +G++
Sbjct: 128 PEQFPGLVYRLGDPKVVLLLFGSGKV 153
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G +DL Q+ + EYN +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 10 NIVASATLGKSVDLPQVAPALEGVEYNLEQFPGLVYKLKEPKTAALIFGSGKLVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFF---FRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
+ K A ++ L P+I F +N+V + ++ L+L + + +EY P
Sbjct: 70 IENSKKAIHIAVDKMRTL-DPDIPHEFEIKVQNIVASANLDKTLNLEAVALDLENTEYEP 128
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ +P+ L F SGK++ GAK D +L K + L +L
Sbjct: 129 EQFPGLVYRLGDPKVVLLLFGSGKVVCTGAKTISDAQLGVEKTKERLSEL 178
>gi|15921539|ref|NP_377208.1| transcription factor [Sulfolobus tokodaii str. 7]
Length = 166
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 212
EY+P +F GLI ++ P+ T L F+SGK+++ GAK + A ++ K LK+ G +
Sbjct: 9 EYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRYGMNLTG 68
Query: 213 Q-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 271
+ +I NIV + ++ V LD + + YEPE FPGLIYRM PRVVLLIF +G+
Sbjct: 69 KPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPGLIYRMEDPRVVLLIFSSGK 127
Query: 272 I 272
+
Sbjct: 128 M 128
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 8/149 (5%)
Query: 64 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ-----LG 118
EY+P +F GLI ++ P+ T L F+SGK+++ GAK + A ++ K LK+ G
Sbjct: 9 EYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRYGMNLTG 68
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
P+I +N+V + ++ ++L++ + + Y P +F GLI ++ +PR L F S
Sbjct: 69 KPKIQ---IQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSS 125
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLG 207
GK++I GAK E + A +K L +L
Sbjct: 126 GKMVITGAKREEEVHKAVKKIFDKLVELD 154
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQK-----NRRGTNL---------NMVGTISV 47
+ K +L + G + G ++ LI+ ++ R G NL N+V + ++
Sbjct: 24 APKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRYGMNLTGKPKIQIQNIVASANL 83
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
++L++ + + Y P +F GLI ++ +PR L F SGK++I GAK E + A
Sbjct: 84 HVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVITGAKREEEVHKAV 143
Query: 108 RKFAKILKQLG 118
+K L +L
Sbjct: 144 KKIFDKLVELD 154
>gi|73668140|ref|YP_304155.1| transcription factor [Methanosarcina barkeri str. Fusaro]
gi|72395302|gb|AAZ69575.1| TATA binding protein of transcription factor TFIID [Methanosarcina
barkeri str. Fusaro]
Length = 183
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL I S+ +EYN KF GL+ ++ +P+ L F SGK++ GA
Sbjct: 8 IENVVASTKLAEEFDLTVIESKFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D AK L +G I+ + NIV + D+ + L+A+ + +
Sbjct: 68 KNVADVHTVIGNMAKKLNSIGITTIENPQITVQNIVASADLHTILNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIDDPKVVVLIFSSGKL 155
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL I S+ +EYN KF GL+ ++ +P+ L F SGK++ GAK+
Sbjct: 10 NVVASTKLAEEFDLTVIESKFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGAKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D AK L +G +P+I +N+V + + L+LN I +
Sbjct: 70 VADVHTVIGNMAKKLNSIGITTIENPQIT---VQNIVASADLHTILNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I +P+ L F SGKL++ G K DC+ + L +G
Sbjct: 127 EYEPEQFPGLVYRIDDPKVVVLIFSSGKLVVTGGKTPEDCERGVEVVRQQLDNMG 181
>gi|335441192|ref|ZP_08561913.1| transcription factor [Halorhabdus tiamatea SARL4B]
gi|334888363|gb|EGM26662.1| transcription factor [Halorhabdus tiamatea SARL4B]
Length = 186
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + + L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLQIVFGKLRDLNIQVDEDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D K A K L++LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEELG 183
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + + L+ L + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLQIVFGKLRDLNIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVALLFGSGKL 157
>gi|240102503|ref|YP_002958812.1| transcription factor [Thermococcus gammatolerans EJ3]
gi|239910057|gb|ACS32948.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
Length = 192
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAELNLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILK-QLGH-----PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
D + A +K ++LK ++G P+I +NMV + +G +L+ + + E
Sbjct: 73 VEDIERAVKKLTEMLKTKVGTKFTKPPQI---DIQNMVFSGDIGMEFNLDAVALSLPNCE 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P +F G+I + +P+ L F SGK++ GAK E D A +K + L++ G
Sbjct: 130 YEPEQFPGVIYRAKDPKAVILLFSSGKIVCSGAKSEKDAWEAVKKLLRELEKYG 183
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAELNLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKILK-QLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
K D + A +K ++LK ++G K I N+V + D+ LDA+ +
Sbjct: 71 KSVEDIERAVKKLTEMLKTKVGTKFTKPPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNCE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPG+IYR P+ V+L+F +G+I
Sbjct: 130 YEPEQFPGVIYRAKDPKAVILLFSSGKI 157
>gi|452207285|ref|YP_007487407.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452083385|emb|CCQ36676.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 12/153 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G L L ++ + SEYNP F GLI +I P L F+SGK++ GA
Sbjct: 10 IENVVASTDIGQELALERLAMDLSGSEYNPDTFPGLIYRIQEPEAANLIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVH 239
D + + + L+ LG I+ + NIV + D+R + L+A L V
Sbjct: 70 NTVDDVHSSLQTVCETLRDLGIDVIEAPTITVQNIVFSADLRAQLNLNAIAIGFGLEDVE 129
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 -----YEPEQFPGLVYRLDTPDVVTLLFSSGKV 157
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G L L ++ + SEYNP F GLI +I P L F+SGK++ GA
Sbjct: 12 NVVASTDIGQELALERLAMDLSGSEYNPDTFPGLIYRIQEPEAANLIFRSGKIVCTGANT 71
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINS--RVRYSEYN 155
D + + + L+ LG E +N+V + + L+LN I + EY
Sbjct: 72 VDDVHSSLQTVCETLRDLGIDVIEAPTITVQNIVFSADLRAQLNLNAIAIGFGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I G K + A K + L +LG
Sbjct: 132 PEQFPGLVYRLDTPDVVTLLFSSGKVVITGTKTPDAAEEALEKISGKLSELG 183
>gi|300709793|ref|YP_003735607.1| TATA-box binding family protein [Halalkalicoccus jeotgali B3]
gi|448297437|ref|ZP_21487483.1| transcription factor [Halalkalicoccus jeotgali B3]
gi|299123476|gb|ADJ13815.1| TATA-box binding family protein [Halalkalicoccus jeotgali B3]
gi|445579746|gb|ELY34139.1| transcription factor [Halalkalicoccus jeotgali B3]
Length = 185
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 11 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 70
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + + L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 71 TDDVHESLQIVFDKLRDLEIQVQDDPEIV---VQNIVTSADLGRNLNLNAIAIGLGLENI 127
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGKL+I G K D + A K L+ LG
Sbjct: 128 EYEPEQFPGLVYRLDEPKVVALLFGSGKLVITGGKQPVDAEHAVDKIVSRLEDLG 182
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 9 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 68
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + + L+ L ++ + NIV + D+ + L+A+ + +
Sbjct: 69 KSTDDVHESLQIVFDKLRDLEIQVQDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 128
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV L+F +G++
Sbjct: 129 YEPEQFPGLVYRLDEPKVVALLFGSGKL 156
>gi|110668436|ref|YP_658247.1| transcription factor [Haloquadratum walsbyi DSM 16790]
gi|385803899|ref|YP_005840299.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
gi|109626183|emb|CAJ52639.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
DSM 16790]
gi|339729391|emb|CCC40639.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
Length = 186
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K +D A + L+ L P+ + NIV + D+ + L+AL + +
Sbjct: 70 KSINDVHDALGIIFEKLRGLSIPVDEDPEITVQNIVSSADLGHTLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDQPEVVILLFGSGKI 157
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
+D A + L+ L P E +N+V + +G L+LN I + EY
Sbjct: 72 INDVHDALGIIFEKLRGLSIPVDEDPEITVQNIVSSADLGHTLNLNALAIGLGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I G K +D A + + ++ LG
Sbjct: 132 PEQFPGLVYRMDQPEVVILLFGSGKIVITGGKQTNDAAAAVEEIVERIEDLG 183
>gi|170035005|ref|XP_001845362.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167876820|gb|EDS40203.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 429
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQ 177
PEI N+V + SV C L+L I + E+ + +G++ MK+ P TT +
Sbjct: 259 EPEIDIVI-NNVVCSFSVRCHLNLRDIAQKGFNVEFR--RENGMVTMKLRRPYTTASIWS 315
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SGK+ GA E K+A+R++++ L++LG ++++ F+I N++ TC + + + +
Sbjct: 316 SGKITCTGATSEDSAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIVNFSE 375
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + +SYEPEL PG+ Y++ P+ L IF G I
Sbjct: 376 KYKKDASYEPELHPGVTYKLYNPKATLKIFSTGSI 410
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L I + E+ + +G++ MK+ P TT + SGK+ GA
Sbjct: 268 NVVCSFSVRCHLNLRDIAQKGFNVEFR--RENGMVTMKLRRPYTTASIWSSGKITCTGAT 325
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRY---SE 153
E K+A+R++++ L++LG + F FR N++GT S+ P + +N +Y +
Sbjct: 326 SEDSAKVAARRYSRCLQKLGF-NVRFRNFRIVNVLGTCSM--PWGIMIVNFSEKYKKDAS 382
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P G+ K+ NP+ T F +G + + G
Sbjct: 383 YEPELHPGVTYKLYNPKATLKIFSTGSITVTG 414
>gi|321468361|gb|EFX79346.1| hypothetical protein DAPPUDRAFT_304868 [Daphnia pulex]
Length = 297
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 102 DCK---LASRKFAKILKQLGHPE-IIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
DC+ L + + + +K+ E +I N+V + SV L+L QI EY
Sbjct: 43 DCEKNGLNNGEVTEEVKETPSEEPVIDITINNVVCSFSVKSHLNLKQIAQSGYNVEYR-- 100
Query: 158 KFHGLI-MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGF 215
+ +G++ M++ P TT + SGK+ GA E + K A+R+ + + +LG+P ++ +
Sbjct: 101 RENGMVTMRLRKPYTTASIWSSGKVTCTGATSEDEAKQAARRITRSVSKLGYPKLRLVNY 160
Query: 216 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
++ N++ TC + F +K+ H +SYEPEL PG+ YR+ +P+ L IF G I
Sbjct: 161 RVVNVLGTCTMPFAIKITPFSAKHRDIASYEPELHPGVTYRLKEPKATLKIFSTGSI 217
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV L+L QI EY + +G++ M++ P TT + SGK+ GA
Sbjct: 74 NVVCSFSVKSHLNLKQIAQSGYNVEYR--RENGMVTMRLRKPYTTASIWSSGKVTCTGAT 131
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYN 155
E + K A+R+ + + +LG+P++ +R N++GT ++ + + +++ R + Y
Sbjct: 132 SEDEAKQAARRITRSVSKLGYPKLRLVNYRVVNVLGTCTMPFAIKITPFSAKHRDIASYE 191
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ ++ P+ T F +G + +
Sbjct: 192 PELHPGVTYRLKEPKATLKIFSTGSITVTA 221
>gi|340344679|ref|ZP_08667811.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519820|gb|EGP93543.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
+DLN I + +EYNP +F GL+ ++ NP+T L F++GK++ G K E A
Sbjct: 23 IDLNDITKKFPDTEYNPDQFPGLVFRLQNPKTATLIFRTGKMVCTGGKSEEMAIKAVNTV 82
Query: 111 AKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMK 165
+ L++ G EI +N+V +I++G + L + + S Y P +F GLI +
Sbjct: 83 VQKLRKGGIKVKKDAEIT---VQNIVASINLGGKVHLEKAARTLPRSMYEPEQFPGLIHR 139
Query: 166 ILNPRTTCLAFQSGKLLILGAKHEHDC 192
+L+P+T L F SGKL+ GAK+E D
Sbjct: 140 MLDPKTVILIFSSGKLVCTGAKNESDV 166
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
+DLN I + +EYNP +F GL+ ++ NP+T L F++GK++ G K E A
Sbjct: 23 IDLNDITKKFPDTEYNPDQFPGLVFRLQNPKTATLIFRTGKMVCTGGKSEEMAIKAVNTV 82
Query: 200 AKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMV 258
+ L++ G +K + NIV + ++ V L+ + S YEPE FPGLI+RM+
Sbjct: 83 VQKLRKGGIKVKKDAEITVQNIVASINLGGKVHLEKAARTLPR-SMYEPEQFPGLIHRML 141
Query: 259 KPRVVLLIFVNGRI 272
P+ V+LIF +G++
Sbjct: 142 DPKTVILIFSSGKL 155
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 26 LIRGGQKNRRGTNL---NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRT 82
L +GG K ++ + N+V +I++G + L + + S Y P +F GLI ++L+P+T
Sbjct: 86 LRKGGIKVKKDAEITVQNIVASINLGGKVHLEKAARTLPRSMYEPEQFPGLIHRMLDPKT 145
Query: 83 TCLAFQSGKLLILGAKHEHDC 103
L F SGKL+ GAK+E D
Sbjct: 146 VILIFSSGKLVCTGAKNESDV 166
>gi|21227130|ref|NP_633052.1| transcription factor [Methanosarcina mazei Go1]
gi|452209606|ref|YP_007489720.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
gi|24638251|sp|Q8PY36.1|TBP2_METMA RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|20905461|gb|AAM30724.1| Transcription initiation factor TFIIB [Methanosarcina mazei Go1]
gi|452099508|gb|AGF96448.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
Length = 183
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL I S+ +EYN KF GL+ ++ +P+ L F SGK++ GA
Sbjct: 8 IENVVASTKLAEEFDLTVIESQFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D AK L +G ++ + NIV + D+ + L+A+ + +
Sbjct: 68 KNVADVHTVIGNMAKKLNSIGIKTMENPQITVQNIVASADLHTILNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKL 155
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL I S+ +EYN KF GL+ ++ +P+ L F SGK++ GAK+
Sbjct: 10 NVVASTKLAEEFDLTVIESQFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGAKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D AK L +G +P+I +N+V + + L+LN I +
Sbjct: 70 VADVHTVIGNMAKKLNSIGIKTMENPQIT---VQNIVASADLHTILNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K DC+ + L +G
Sbjct: 127 EYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKTPEDCESGVEVVRQQLDNMG 181
>gi|448414415|ref|ZP_21577484.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445681981|gb|ELZ34405.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 186
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A L+ L P+ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKI 157
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A L+ L P E +N+V + +G L+LN I + EY
Sbjct: 72 IDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I G K D + A + K + LG
Sbjct: 132 PEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDDAETAVVEIVKRIDNLG 183
>gi|394774083|gb|AFN37232.1| TATA-box binding protein [Aphis glycines]
Length = 149
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 60/86 (69%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V T+++GC LDL I R +E+NP +F +IM+I PRTT L F SGK++ GA
Sbjct: 64 LQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 123
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKY 212
K E D +LA+RK+A+I+++L P K+
Sbjct: 124 KSEEDSRLAARKYARIIQKLSFPAKF 149
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++GC LDL I R +E+NP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 66 NIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 125
Query: 100 EHDCKLASRKFAKILKQLGHP 120
E D +LA+RK+A+I+++L P
Sbjct: 126 EEDSRLAARKYARIIQKLSFP 146
>gi|399576129|ref|ZP_10769886.1| transcription factor [Halogranum salarium B-1]
gi|399238840|gb|EJN59767.1| transcription factor [Halogranum salarium B-1]
Length = 186
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + L++L PEI +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLNIVFDKLRELKIQVEDDPEIT---VQNIVTSADLGKNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGKL+I G K D K A + L +LG
Sbjct: 129 EYEPEQFPGLVYRLDEPKVVALLFGSGKLVITGGKKPEDAKHAVEVITERLSELG 183
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L++L ++ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLNIVFDKLRELKIQVEDDPEITVQNIVTSADLGKNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPKVVALLFGSGKL 157
>gi|307353232|ref|YP_003894283.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
gi|307156465|gb|ADN35845.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
Length = 184
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + +DL I ++ E N KF G + +I NP+ L F SGK+++ G
Sbjct: 11 IENIVASGVIADSIDLEDIAEKIENCELNKKKFPGAVFRIENPKVAVLVFSSGKIVMTGI 70
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDAL-HHVHSQFSS 244
+ E D KL K LK G I N+VC+ D + L+ + ++ +
Sbjct: 71 RREEDLKLGLDYLMKELKAAGVSTFDVPDVAITNMVCSYDTEKQINLNRIVVALNLENIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P++V L+F +G++
Sbjct: 131 YEPEQFPGLVYRLDDPKIVALLFSSGKV 158
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + +DL I ++ E N KF G + +I NP+ L F SGK+++ G +
Sbjct: 13 NIVASGVIADSIDLEDIAEKIENCELNKKKFPGAVFRIENPKVAVLVFSSGKIVMTGIRR 72
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYS--EYN 155
E D KL K LK G ++ NMV + ++LN+I + EY
Sbjct: 73 EEDLKLGLDYLMKELKAAGVSTFDVPDVAITNMVCSYDTEKQINLNRIVVALNLENIEYE 132
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
P +F GL+ ++ +P+ L F SGK+++ G ++ D + K K L+ +
Sbjct: 133 PEQFPGLVYRLDDPKIVALLFSSGKVILTGGRNLDDVRAGLDKLEKQLESI 183
>gi|154150459|ref|YP_001404077.1| transcription factor [Methanoregula boonei 6A8]
gi|153999011|gb|ABS55434.1| TATA-box binding [Methanoregula boonei 6A8]
Length = 186
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL + S+++ +EYN +F G+++++ +P+ L F SGK+++ GAK
Sbjct: 13 NIVASAKVTDYLDLPALASKIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINS--RVRYSEYN 155
L+ L P+ + + +N+V + + ++LN+I + EY
Sbjct: 73 VDSLSKGLTILGNQLRSLDIDIPKKLTYKIQNIVTSADLATAINLNKIAVGFNLDRIEYE 132
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ NP+ L F SGKL+I G K D K A K L+ LG
Sbjct: 133 PEQFPGLVYRLENPKVVVLLFGSGKLIITGGKEPEDAKKAVVKILSDLRSLG 184
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDL + S+++ +EYN +F G+++++ +P+ L F SGK+++ GA
Sbjct: 11 IENIVASAKVTDYLDLPALASKIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K L+ L I K +KI NIV + D+ + L+ + +
Sbjct: 71 KSVDSLSKGLTILGNQLRSLDIDIPKKLTYKIQNIVTSADLATAINLNKIAVGFNLDRIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 131 YEPEQFPGLVYRLENPKVVVLLFGSGKL 158
>gi|409096743|ref|ZP_11216767.1| transcription factor [Thermococcus zilligii AN1]
Length = 191
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 95/172 (55%), Gaps = 9/172 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLNLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKIL-KQLGH-----PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
D K+ K ++L K++G P+I +NMV + +G +L+ + + E
Sbjct: 73 VDDIKMGVNKLIELLSKKVGTRFTKPPQI---DIQNMVFSGDIGMEFNLDAVALSLPNCE 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
Y P +F G+I ++ +P+ L F SGK++ GAK E+D A ++ + L++
Sbjct: 130 YEPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSENDAWEAVKRLIRELEK 181
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++ GA
Sbjct: 11 IENIVASVDLFAQLNLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
Query: 187 KHEHDCKLASRKFAKIL-KQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
K D K+ K ++L K++G K I N+V + D+ LDA+ +
Sbjct: 71 KSVDDIKMGVNKLIELLSKKVGTRFTKPPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNCE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPG+IYR+ P+ V+L+F +G+I
Sbjct: 130 YEPEQFPGVIYRVKDPKAVILLFSSGKI 157
>gi|313126218|ref|YP_004036488.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286060|ref|ZP_21477295.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312292583|gb|ADQ67043.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445575111|gb|ELY29590.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 186
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A L+ L P+ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKI 157
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A L+ L P E +N+V + +G L+LN I + EY
Sbjct: 72 IDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I G K +D + A + K + LG
Sbjct: 132 PEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTNDAETAVEEIVKRIDNLG 183
>gi|83764126|emb|CAJ12158.1| trf2 protein [Drosophila simulans]
Length = 196
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 4/143 (2%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQ 177
PE+ N+V + SVGC L L I + EY + +G++ MK+ +P TT +
Sbjct: 57 EPEL-DIVINNVVCSFSVGCHLKLRDIALQGSNVEYR--RENGMVTMKLRHPYTTASIWS 113
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SG++ GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+
Sbjct: 114 SGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSE 173
Query: 238 VHSQFSSYEPELFPGLIYRMVKP 260
H + +SYEPEL PG+ Y+M P
Sbjct: 174 RHRENASYEPELHPGVTYKMRDP 196
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SVGC L L I + EY + +G++ MK+ +P TT + SG++ GA
Sbjct: 66 NVVCSFSVGCHLKLRDIALQGSNVEYR--RENGMVTMKLRHPYTTASIWSSGRITCTGAT 123
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSE--- 153
E K+A+R++A+ L +LG P F FR N++GT S+ P + +N R+ E
Sbjct: 124 SESMAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSM--PWAIKIVNFSERHRENAS 180
Query: 154 YNPGKFHGLIMKILNP 169
Y P G+ K+ +P
Sbjct: 181 YEPELHPGVTYKMRDP 196
>gi|448466589|ref|ZP_21599175.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445813850|gb|EMA63824.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 186
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHEALGIIFEKLRGLQIPVEDDPDITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKI 157
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A + L+ L P+I +N+V + +G L+LN I +
Sbjct: 72 IDDVHEALGIIFEKLRGLQIPVEDDPDIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
EY P +F GL+ ++ P L F SGK++I G K D
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
>gi|20093119|ref|NP_619194.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638258|sp|Q8TI26.1|TBP1_METAC RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|19918456|gb|AAM07674.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 183
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++ GA
Sbjct: 8 IENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D AK L +G ++ + NIV + D+ + L+A+ + +
Sbjct: 68 KNVADVHTVIGNMAKKLNSIGIKTMENPQITVQNIVASADLHTILNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKL 155
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++ GAK+
Sbjct: 10 NVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGAKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D AK L +G +P+I +N+V + + L+LN I +
Sbjct: 70 VADVHTVIGNMAKKLNSIGIKTMENPQIT---VQNIVASADLHTILNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K DC+ + L +G
Sbjct: 127 EYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKSPEDCERGVEVVRQQLDNMG 181
>gi|21227129|ref|NP_633051.1| transcription factor [Methanosarcina mazei Go1]
gi|452209605|ref|YP_007489719.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
gi|24638252|sp|Q8PY37.1|TBP1_METMA RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|20905460|gb|AAM30723.1| Transcription initiation factor TFIIB [Methanosarcina mazei Go1]
gi|452099507|gb|AGF96447.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
Length = 183
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++ G
Sbjct: 8 IENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGT 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D AK L +G I+ + NIV + D+ + L+A+ + +
Sbjct: 68 KNVADVHTVVGNLAKKLNSIGIKTIENPQITVQNIVASADLHTILNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKL 155
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++ G K+
Sbjct: 10 NVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGTKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D AK L +G +P+I +N+V + + L+LN I +
Sbjct: 70 VADVHTVVGNLAKKLNSIGIKTIENPQIT---VQNIVASADLHTILNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K DC+ + + L +G
Sbjct: 127 EYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVAGGKSPEDCERSVEVVRQQLDSMG 181
>gi|14586424|emb|CAC42920.1| TATA-binding protein [Methanosarcina mazei]
Length = 183
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++ G
Sbjct: 8 IENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGT 67
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K+ D AK L +G I+ + NIV + D+ + L+A+ + +
Sbjct: 68 KNVADVHTVVGNLAKKLNSIGIKTIEDPQITVQNIVASADLHTILNLNAIAIGLGLENIE 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV+LIF +G++
Sbjct: 128 YEPEQFPGLVYRIDEPKVVVLIFSSGKL 155
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++ G K+
Sbjct: 10 NVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGTKN 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D AK L +G P+I +N+V + + L+LN I +
Sbjct: 70 VADVHTVVGNLAKKLNSIGIKTIEDPQIT---VQNIVASADLHTILNLNAIAIGLGLENI 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGKL++ G K DC+ + + L +G
Sbjct: 127 EYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVAGGKSPEDCERSVEVVRQQLDSMG 181
>gi|16081349|ref|NP_393677.1| transcription factor [Thermoplasma acidophilum DSM 1728]
gi|14423941|sp|Q9HLM8.1|TBP_THEAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|10639343|emb|CAC11345.1| probable TATA-box binding protein (TFIID homolog) [Thermoplasma
acidophilum]
Length = 184
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+ LDL++I + SEY P +F GLI ++ P+T L F+SGK+ GAK+
Sbjct: 11 NIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTGAKN 70
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFF-----FFRNMVGTISVGCPLDLNQINSR--VRYS 152
D K R I+ +L +I + +N+V + L+L I +
Sbjct: 71 IEDVK---RTIKIIIDKLKAADIEVYDDPQIIVQNIVAVYDLESELNLTDIAMSLGLENV 127
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ PR L F SGK++ GAK E + + A K K L+++G
Sbjct: 128 EYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVG 182
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 4/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+ LDL++I + SEY P +F GLI ++ P+T L F+SGK+ GA
Sbjct: 9 IENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTGA 68
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKI--HNIVCTCDVRFPVKL-DALHHVHSQFS 243
K+ D K + LK + Y +I NIV D+ + L D + +
Sbjct: 69 KNIEDVKRTIKIIIDKLKAADIEV-YDDPQIIVQNIVAVYDLESELNLTDIAMSLGLENV 127
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +PRVVLL+F +G++
Sbjct: 128 EYEPEQFPGLVYRVEEPRVVLLLFGSGKV 156
>gi|408406051|ref|YP_006864035.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408366647|gb|AFU60377.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 187
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +V ++LN I EY+P +F GL+ ++ +P+T L F SGK++ GA
Sbjct: 10 IENVVASATVNQTVNLNLITQIFPDVEYHPDQFPGLVFRLRSPKTATLIFSSGKMVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K E A + LK+ G P++++ +I NIV + + + L+ V + S Y
Sbjct: 70 KSEKMAIQAVKNVVLKLKKGGIPLEHEPQIEIQNIVASASLGGKIHLELAARVLPR-SMY 128
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLI+RM+ P+ V+L+F +G++
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKL 155
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +V ++LN I EY+P +F GL+ ++ +P+T L F SGK++ GAK
Sbjct: 12 NVVASATVNQTVNLNLITQIFPDVEYHPDQFPGLVFRLRSPKTATLIFSSGKMVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
E A + LK+ G P+I +N+V + S+G + L + S Y
Sbjct: 72 EKMAIQAVKNVVLKLKKGGIPLEHEPQI---EIQNIVASASLGGKIHLELAARVLPRSMY 128
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
P +F GLI ++L+P+T L F SGKL+ GAK E + A +L++
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESEVYRAVGNLHTLLEE 179
>gi|157136872|ref|XP_001663841.1| tata-box binding protein [Aedes aegypti]
gi|108869850|gb|EAT34075.1| AAEL013653-PA [Aedes aegypti]
Length = 584
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 115 KQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTC 173
+Q PEI N+V + SV C L+L I + E+ + +G++ MK+ P TT
Sbjct: 280 EQEAEPEIDIVI-NNVVCSFSVRCHLNLRDIALKGFNVEFR--RENGMVTMKLRRPYTTA 336
Query: 174 LAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLD 233
+ SGK+ GA E K+A+R++++ L++LG ++++ F+I N++ TC + + + +
Sbjct: 337 SIWSSGKITCTGATSEDQAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIV 396
Query: 234 ALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + +SYEPEL PG+ Y++ P+ L IF G I
Sbjct: 397 NFSEKYKKDASYEPELHPGVTYKLYNPKATLKIFSTGSI 435
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 11/153 (7%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L I + E+ + +G++ MK+ P TT + SGK+ GA
Sbjct: 293 NVVCSFSVRCHLNLRDIALKGFNVEFR--RENGMVTMKLRRPYTTASIWSSGKITCTGAT 350
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRY---SE 153
E K+A+R++++ L++LG + F FR N++GT S+ P + +N +Y +
Sbjct: 351 SEDQAKVAARRYSRCLQKLGF-NVRFRNFRIVNVLGTCSM--PWGIMIVNFSEKYKKDAS 407
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P G+ K+ NP+ T F +G + + A
Sbjct: 408 YEPELHPGVTYKLYNPKATLKIFSTGSITVTAA 440
>gi|118358642|ref|XP_001012562.1| TATA-box binding protein [Tetrahymena thermophila]
gi|89294329|gb|EAR92317.1| TATA-box binding protein [Tetrahymena thermophila SB210]
Length = 231
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 14/146 (9%)
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRK- 198
DL +I + R ++YNP +F + M+I +P+ T L + SG + I+G + ++ + A+ +
Sbjct: 39 FDLQEIAQKCRNTQYNPKRFPAVFMRIKDPKATGLIYSSGNMTIVGTRSTNESQTAAERI 98
Query: 199 FAKILKQLGHPIKYQG--FKIHNIVCTCDVRFPVKLDALHH--VHSQFSSYEPELFPGLI 254
F I KQL +++ ++ NIV +C + +PV LD +H H QFS+Y+ + FPGLI
Sbjct: 99 FGIIKKQLNVDCRFENKEVQVRNIVASCKLGYPVCLDKIHDDKDHKQFSTYD-DTFPGLI 157
Query: 255 YR-MVKP-------RVVLLIFVNGRI 272
YR M+ P ++ L+F +G++
Sbjct: 158 YRYMLNPGEQKKKNNIIALVFASGKM 183
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRK- 109
DL +I + R ++YNP +F + M+I +P+ T L + SG + I+G + ++ + A+ +
Sbjct: 39 FDLQEIAQKCRNTQYNPKRFPAVFMRIKDPKATGLIYSSGNMTIVGTRSTNESQTAAERI 98
Query: 110 FAKILKQLGHP---EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYN--PGKFHGLIM 164
F I KQL E RN+V + +G P+ L++I+ + +++ F GLI
Sbjct: 99 FGIIKKQLNVDCRFENKEVQVRNIVASCKLGYPVCLDKIHDDKDHKQFSTYDDTFPGLIY 158
Query: 165 K-ILNP-------RTTCLAFQSGKLLILGAKHEHDCKLASRK 198
+ +LNP L F SGK++ GAK + D + A K
Sbjct: 159 RYMLNPGEQKKKNNIIALVFASGKMVFTGAKSQEDIQQAYDK 200
>gi|84489891|ref|YP_448123.1| transcription factor [Methanosphaera stadtmanae DSM 3091]
gi|121731087|sp|Q2NFC3.1|TBP_METST RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|84373210|gb|ABC57480.1| TATA-box binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 183
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + ++G L+L +I + EYN +F GL+ K+ +P+T L F SGKL+ GAK
Sbjct: 9 ENIVASATLGKSLELPKIAPALENVEYNLEQFPGLVFKLKDPKTAALIFGSGKLVCTGAK 68
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
D A +++L I + KI NIV + ++ + L+A+ + + + YE
Sbjct: 69 CIEDSIKAIHMTVDKIRELDTEIPEEFEIKIQNIVASANLGKVLNLEAVA-LDLENTEYE 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL+YR+ P+VVLL+F +G++
Sbjct: 128 PEQFPGLVYRLSDPKVVLLLFGSGKV 153
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G L+L +I + EYN +F GL+ K+ +P+T L F SGKL+ GAK
Sbjct: 10 NIVASATLGKSLELPKIAPALENVEYNLEQFPGLVFKLKDPKTAALIFGSGKLVCTGAKC 69
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
D A +++L PE +N+V + ++G L+L + + +EY P
Sbjct: 70 IEDSIKAIHMTVDKIRELDTEIPEEFEIKIQNIVASANLGKVLNLEAVALDLENTEYEPE 129
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ +P+ L F SGK++ GAK L +K + L +L
Sbjct: 130 QFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTADQALLGVQKTKERLIEL 178
>gi|222479944|ref|YP_002566181.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222452846|gb|ACM57111.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHEALGIIFEKLRGLQIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKI 157
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 4/156 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A + L+ L P E +N+V + +G L+LN I + EY
Sbjct: 72 IDDVHEALGIIFEKLRGLQIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
P +F GL+ ++ P L F SGK++I G K D
Sbjct: 132 PEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
>gi|448498781|ref|ZP_21610993.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445698147|gb|ELZ50197.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHEALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKI 157
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A + L+ L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHEALGIIFEKLRGLQIPVEDDPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGK++I G K D + A ++ + ++ LG
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDDAEEAVKEIVERIEGLG 183
>gi|13542225|ref|NP_111913.1| transcription factor [Thermoplasma volcanium GSS1]
gi|24638241|sp|Q978J5.1|TBP_THEVO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|14325659|dbj|BAB60562.1| TATA-binding protein [TBP] [Thermoplasma volcanium GSS1]
Length = 184
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+ LDL++I + SEY P +F GLI ++ +P+T L F+SGK+ GAK+
Sbjct: 11 NIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAKN 70
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSR--VRYS 152
D K + LK P+II +N+V + L+L I +
Sbjct: 71 IEDVKRTIKIIIDKLKAANIEVYDDPDII---VQNIVAVYDLESELNLTDIAMSLGLENV 127
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ PR L F SGK++ GAK E + + A K K L+++G
Sbjct: 128 EYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVG 182
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+ LDL++I + SEY P +F GLI ++ +P+T L F+SGK+ GA
Sbjct: 9 IENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGA 68
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKL-DALHHVHSQFSS 244
K+ D K + LK + + NIV D+ + L D + +
Sbjct: 69 KNIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVE 128
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +PRVVLL+F +G++
Sbjct: 129 YEPEQFPGLVYRVEEPRVVLLLFGSGKV 156
>gi|448493598|ref|ZP_21609110.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445690153|gb|ELZ42373.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHDALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKI 157
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A + L+ L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHDALGIIFEKLRGLQIPVEDDPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
EY P +F GL+ ++ P L F SGK++I G K D
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDD 167
>gi|20089176|ref|NP_615251.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638262|sp|Q8TTZ7.1|TBP3_METAC RecName: Full=TATA-box-binding protein 3; AltName: Full=Box
A-binding protein 3; Short=BAP 3; AltName: Full=TATA
sequence-binding protein 3; Short=TBP 3; AltName:
Full=TATA-box factor 3
gi|19914048|gb|AAM03731.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 185
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 40 NMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+V + ++ DL +I +S + +EYN KF GL+ +I NP+ L F SGK++ GAK
Sbjct: 9 NVVASTALATEFDLVKIMDSGLEGAEYNKTKFPGLVYRIDNPKAAFLIFTSGKVVCTGAK 68
Query: 99 HEHDCKLASRKFAKILKQLG------HPEIIFFFFRNMVGTISVGCPLDLNQINSR--VR 150
++ A A LK +G PEI +N+V + + L+LN I +
Sbjct: 69 TINNAHKAITNLANKLKDIGCDKINLEPEI---HVQNIVASADLKTTLNLNTIAIAFGLE 125
Query: 151 YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P F GLI ++ P+ L F SGKL+I G K E DC R K LG
Sbjct: 126 NVEYEPEVFPGLIYRVEAPKVVVLVFSSGKLVITGGKCEEDCNGGLRIVRKEFDNLG 182
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 127 FRNMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V + ++ DL +I +S + +EYN KF GL+ +I NP+ L F SGK++ G
Sbjct: 7 IENVVASTALATEFDLVKIMDSGLEGAEYNKTKFPGLVYRIDNPKAAFLIFTSGKVVCTG 66
Query: 186 AKHEHDCKLASRKFAKILKQLG-HPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHS-QF 242
AK ++ A A LK +G I + + NIV + D++ + L+ + +
Sbjct: 67 AKTINNAHKAITNLANKLKDIGCDKINLEPEIHVQNIVASADLKTTLNLNTIAIAFGLEN 126
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPGLIYR+ P+VV+L+F +G++
Sbjct: 127 VEYEPEVFPGLIYRVEAPKVVVLVFSSGKL 156
>gi|432963770|ref|XP_004086828.1| PREDICTED: TATA-box-binding protein-like [Oryzias latipes]
Length = 237
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Query: 121 EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGK 180
E+ +N+V + +GC LDL I + ++YNP + GLIM+I PRTT + +GK
Sbjct: 87 ELPPLQIKNVVSVVDLGCRLDLGAIGKALWNTQYNPKTYTGLIMRIRKPRTTANIYSTGK 146
Query: 181 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
++ A + + A+R+ A+IL++ G P+++ F++ N VC F + L+ L +
Sbjct: 147 MICTAACSIEESRQAARRHARILQKAGFPVRFLNFRVINCVCMVKT-FCLNLEGLTRSNP 205
Query: 241 QFSSYEPELFPGLIYR 256
Q S+EPEL P + R
Sbjct: 206 QGFSFEPELNPAVFLR 221
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +GC LDL I + ++YNP + GLIM+I PRTT + +GK++ A
Sbjct: 95 NVVSVVDLGCRLDLGAIGKALWNTQYNPKTYTGLIMRIRKPRTTANIYSTGKMICTAACS 154
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR 128
+ + A+R+ A+IL++ G P + F FR
Sbjct: 155 IEESRQAARRHARILQKAGFP-VRFLNFR 182
>gi|153791987|ref|NP_001093265.1| TATA box binding protein-like 1 [Takifugu rubripes]
gi|148910859|tpg|DAA06040.1| TPA_inf: TATA box binding protein-like 1 [Takifugu rubripes]
Length = 185
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T C L+L I Y P + + MK+ PR T + SGK++ GA
Sbjct: 15 NVVATFRTRCHLNLRTIALEGNNVIYKPEQ-GTVTMKLRKPRITANIWSSGKIICTGASS 73
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E + KL +R+ A+ L++LG +K+ FK+ N++ C + F + L + ++YEPE
Sbjct: 74 EDEAKLGARRLARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKNRPIATYEPE 133
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
L+P +Y M +P+ + +F G +
Sbjct: 134 LYPAAMYTMRQPKATIKVFSTGSV 157
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T C L+L I Y P + + MK+ PR T + SGK++ GA
Sbjct: 15 NVVATFRTRCHLNLRTIALEGNNVIYKPEQ-GTVTMKLRKPRITANIWSSGKIICTGASS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPL-------DLNQINSRVRYS 152
E + KL +R+ A+ L++LG ++ F F+ V + GC + D + N + +
Sbjct: 74 EDEAKLGARRLARCLQKLGF-KVKFSAFK--VVNVMAGCSMPFKISLIDFTKKNRPI--A 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + + + P+ T F +G + ILG
Sbjct: 129 TYEPELYPAAMYTMRQPKATIKVFSTGSVTILG 161
>gi|374633744|ref|ZP_09706109.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Metallosphaera yellowstonensis MK1]
gi|373523532|gb|EHP68452.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Metallosphaera yellowstonensis MK1]
Length = 167
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 212
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K L++ G I+
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYG--IRI 66
Query: 213 QG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
G +I NIV + ++ V LD + + YEPE FPGLI+RM PRVVLLIF +
Sbjct: 67 GGKPKIQIQNIVASANMHVHVNLDKAAFLLEN-NMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 270 GRI 272
G++
Sbjct: 126 GKM 128
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Query: 64 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL-----G 118
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K L++ G
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYGIRIGG 68
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
P+I +N+V + ++ ++L++ + + Y P +F GLI ++ +PR L F S
Sbjct: 69 KPKIQ---IQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQL 206
GK++I GAK E + A +K L+ L
Sbjct: 126 GKMVITGAKREDEVYRAVKKIFDKLESL 153
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQK-----NRRGTNL---------NMVGTISV 47
S K +L + G + G ++ LI+ ++ R G + N+V + ++
Sbjct: 24 SPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYGIRIGGKPKIQIQNIVASANM 83
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
++L++ + + Y P +F GLI ++ +PR L F SGK++I GAK E + A
Sbjct: 84 HVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVYRAV 143
Query: 108 RKFAKILKQL 117
+K L+ L
Sbjct: 144 KKIFDKLESL 153
>gi|448428387|ref|ZP_21584257.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|448429752|ref|ZP_21584617.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|448439730|ref|ZP_21588142.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|448453748|ref|ZP_21594091.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448454831|ref|ZP_21594311.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|448474251|ref|ZP_21602110.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|448485769|ref|ZP_21606914.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448511919|ref|ZP_21616298.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448519932|ref|ZP_21618139.1| transcription factor [Halorubrum distributum JCM 10118]
gi|448537266|ref|ZP_21622541.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445676556|gb|ELZ29076.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445689808|gb|ELZ42032.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445690882|gb|ELZ43085.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445694753|gb|ELZ46872.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445702110|gb|ELZ54073.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445703496|gb|ELZ55426.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445807548|gb|EMA57633.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445814514|gb|EMA64476.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445817468|gb|EMA67342.1| transcription factor [Halorubrum arcis JCM 13916]
gi|445817558|gb|EMA67427.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 186
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GA
Sbjct: 10 IQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 70 KSIDDVHEALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YRM +P VV+L+F +G+I
Sbjct: 130 YEPEQFPGLVYRMDEPEVVILLFGSGKI 157
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A + L+ L PEI +N+V + +G L+LN I +
Sbjct: 72 IDDVHEALGIIFEKLRGLQIPVEDDPEIT---VQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
EY P +F GL+ ++ P L F SGK++I G K D
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
>gi|195355070|ref|XP_002044016.1| GM21561 [Drosophila sechellia]
gi|194129269|gb|EDW51312.1| GM21561 [Drosophila sechellia]
Length = 278
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 11/144 (7%)
Query: 135 SVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAKHEH 190
SVGC L L I S V Y N G++ MK+ +P TT + SG++ GA E
Sbjct: 7 SVGCHLKLRDIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCTGATSES 61
Query: 191 DCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELF 250
K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +SYEPEL
Sbjct: 62 MAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELH 121
Query: 251 PGLIYRM--VKPRVVLLIFVNGRI 272
PG+ Y+M P+ L IF G +
Sbjct: 122 PGVTYKMRDPDPKATLKIFSTGSV 145
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 46 SVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAKHEH 101
SVGC L L I S V Y N G++ MK+ +P TT + SG++ GA E
Sbjct: 7 SVGCHLKLRDIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCTGATSES 61
Query: 102 DCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRY-SEYNPGK 158
K+A+R++A+ L +LG P F FR N++GT S+ + + + R R + Y P
Sbjct: 62 MAKVAARRYARCLGKLGFP-TRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPEL 120
Query: 159 FHGLI--MKILNPRTTCLAFQSGKLLILGAKHEH 190
G+ M+ +P+ T F +G + + A H
Sbjct: 121 HPGVTYKMRDPDPKATLKIFSTGSVTVTAASVNH 154
>gi|195143693|ref|XP_002012832.1| GL23716 [Drosophila persimilis]
gi|194101775|gb|EDW23818.1| GL23716 [Drosophila persimilis]
Length = 640
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 17/225 (7%)
Query: 59 RVRYSEYNPGKFHGLIM----KILNPRTTCLAFQS----GKLLILGAKHEHDCKLASRKF 110
+ R+S+++ G ++ ++L+P T Q+ +++ D LA
Sbjct: 166 KARFSQFSKGGISTAVLPQQQQMLDPFTEHAEAQAQTPAAEIVPEPDAPVTDEPLALLSH 225
Query: 111 AKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSR---VRYSEYNPGKFHGLIMKIL 167
K + P++ RN+V + +VGC LDL+ I R V+Y + L MK+
Sbjct: 226 QKTAAEADDPKL-NILIRNVVCSFNVGCQLDLSDIAQRGFNVKY-----HRSRNLTMKLR 279
Query: 168 NPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVR 227
P T L + SG++ G E K+A+R+FA+ L +LG P ++Q F+I ++ TC +
Sbjct: 280 RPAATALIWSSGRINCTGTTSEILAKVAARRFARCLWKLGFPTRFQNFRIETVLGTCRMP 339
Query: 228 FPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + + H + + EPE+ + Y+M P+ L IF G I
Sbjct: 340 WDINIVNFSKKHPENAKQEPEMHWCVTYKMQMPKATLKIFTTGSI 384
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 40 NMVGTISVGCPLDLNQINSR---VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V + +VGC LDL+ I R V+Y + L MK+ P T L + SG++ G
Sbjct: 243 NVVCSFNVGCQLDLSDIAQRGFNVKY-----HRSRNLTMKLRRPAATALIWSSGRINCTG 297
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGC--PLDLNQINSRVRYSE- 153
E K+A+R+FA+ L +LG P F FR + T+ C P D+N +N ++ E
Sbjct: 298 TTSEILAKVAARRFARCLWKLGFP-TRFQNFR--IETVLGTCRMPWDINIVNFSKKHPEN 354
Query: 154 --YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
P + K+ P+ T F +G + ++ A
Sbjct: 355 AKQEPEMHWCVTYKMQMPKATLKIFTTGSITVMAA 389
>gi|330834362|ref|YP_004409090.1| transcription factor [Metallosphaera cuprina Ar-4]
gi|329566501|gb|AEB94606.1| transcription factor [Metallosphaera cuprina Ar-4]
Length = 167
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 212
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K L++ G I+
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYG--IRI 66
Query: 213 QG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 269
G +I NIV + ++ V LD + + YEPE FPGLI+RM PRVVLLIF +
Sbjct: 67 GGKPKIQIQNIVASANMHVHVNLDKAAFLLEN-NMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 270 GRI 272
G++
Sbjct: 126 GKM 128
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Query: 64 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL-----G 118
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K L++ G
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYGIRIGG 68
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
P+I +N+V + ++ ++L++ + + Y P +F GLI ++ +PR L F S
Sbjct: 69 KPKI---QIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQL 206
GK++I GAK E + A +K L++L
Sbjct: 126 GKMVITGAKREDEVYKAVKKIFDKLEEL 153
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 2 SSKRKNLKYGIGSACIGGGQACFCLIRGGQK-----NRRGTNL---------NMVGTISV 47
S K +L + G + G ++ LI+ ++ R G + N+V + ++
Sbjct: 24 SPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYGIRIGGKPKIQIQNIVASANM 83
Query: 48 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 107
++L++ + + Y P +F GLI ++ +PR L F SGK++I GAK E + A
Sbjct: 84 HVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVYKAV 143
Query: 108 RKFAKILKQL 117
+K L++L
Sbjct: 144 KKIFDKLEEL 153
>gi|448302509|ref|ZP_21492488.1| transcription factor [Natronorubrum tibetense GA33]
gi|445581175|gb|ELY35537.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + VG L+L+ + + +Y+P F GLI ++ +P+ T L F++GK++ GA
Sbjct: 10 IQNVVASTGVGQELELDALGQDLDDVQYDPDHFPGLIYRLQDPKATVLLFRTGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLG--HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 243
H+ + A + L+ LG P + + NIV D+ + L+A+ + +
Sbjct: 70 TSVHNVQTALQDVFDTLRSLGIEAPADRE-ITVQNIVSNADLDRQLNLNAIAIGLGLENV 128
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P V+L+F +G++
Sbjct: 129 EYEPEQFPGLLYRLDEPEAVVLLFTSGKL 157
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + VG L+L+ + + +Y+P F GLI ++ +P+ T L F++GK++ GA
Sbjct: 12 NVVASTGVGQELELDALGQDLDDVQYDPDHFPGLIYRLQDPKATVLLFRTGKIVCTGATS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
H+ + A + L+ LG P +N+V + L+LN I + EY
Sbjct: 72 VHNVQTALQDVFDTLRSLGIEAPADREITVQNIVSNADLDRQLNLNAIAIGLGLENVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGKLLI G K + + L+QLG
Sbjct: 132 PEQFPGLLYRLDEPEAVVLLFTSGKLLITGVKTREAIEDSLAVIIDRLEQLG 183
>gi|374628350|ref|ZP_09700735.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
gi|373906463|gb|EHQ34567.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
Length = 184
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + +DL I+ + E N +F G +++I P+ L F SGK+++ G
Sbjct: 11 IENIVASGEIAKEMDLQSISENIDNCELNTKRFPGAVLRITVPKIAALLFSSGKVVLTGI 70
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDAL-HHVHSQFSS 244
++ D + K LK+ G K+ NIVC+ D+ PV L+ + ++ +
Sbjct: 71 RNNEDLEKGLDIIIKSLKENGVDTFDVPNVKVTNIVCSYDMGKPVNLNRIVVTLNLENIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P++V LIF +G+I
Sbjct: 131 YEPEQFPGLVYRIEEPKIVALIFSSGKI 158
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + +DL I+ + E N +F G +++I P+ L F SGK+++ G ++
Sbjct: 13 NIVASGEIAKEMDLQSISENIDNCELNTKRFPGAVLRITVPKIAALLFSSGKVVLTGIRN 72
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYS--EYN 155
D + K LK+ G ++ N+V + +G P++LN+I + EY
Sbjct: 73 NEDLEKGLDIIIKSLKENGVDTFDVPNVKVTNIVCSYDMGKPVNLNRIVVTLNLENIEYE 132
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 193
P +F GL+ +I P+ L F SGK+++ G K+ D K
Sbjct: 133 PEQFPGLVYRIEEPKIVALIFSSGKIILTGGKNMEDIK 170
>gi|379994425|gb|AFD22839.1| TATA-box-binding protein, partial [Collodictyon triciliatum]
Length = 80
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 51/62 (82%)
Query: 211 KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 270
++ FKI NIV +CDV FP++L+ L HVH + SYEPELFPGLIYRM +P++VLLIFV+G
Sbjct: 3 RFLDFKIQNIVGSCDVSFPIRLEGLAHVHHSYCSYEPELFPGLIYRMQEPKIVLLIFVSG 62
Query: 271 RI 272
+I
Sbjct: 63 KI 64
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI 183
F +N+VG+ V P+ L + + Y Y P F GLI ++ P+ L F SGK+++
Sbjct: 7 FKIQNIVGSCDVSFPIRLEGLAHVHHSYCSYEPELFPGLIYRMQEPKIVLLIFVSGKIVL 66
Query: 184 LGAKHEHD 191
GAK D
Sbjct: 67 TGAKTRLD 74
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 40 NMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ V P+ L + + Y Y P F GLI ++ P+ L F SGK+++ GAK
Sbjct: 11 NIVGSCDVSFPIRLEGLAHVHHSYCSYEPELFPGLIYRMQEPKIVLLIFVSGKIVLTGAK 70
Query: 99 HEHD 102
D
Sbjct: 71 TRLD 74
>gi|158288977|ref|XP_310781.4| AGAP000335-PA [Anopheles gambiae str. PEST]
Length = 231
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKL 181
I N+V + SV C L+L I E+ + +G++ MK+ P TT + SGK+
Sbjct: 55 IDIVINNVVCSFSVRCHLNLRDIALYGDNVEFR--RENGMVTMKLRRPYTTASIWSSGKI 112
Query: 182 LILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQ 241
GA E K+A+R++++ L++LG ++ + F+I N++ TC + + +K+ + +
Sbjct: 113 TCTGATSEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKK 172
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+SYEPEL PG+ Y++ PR L IF G I
Sbjct: 173 DASYEPELHPGVTYKLHSPRATLKIFSTGSI 203
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L I E+ + +G++ MK+ P TT + SGK+ GA
Sbjct: 61 NVVCSFSVRCHLNLRDIALYGDNVEFR--RENGMVTMKLRRPYTTASIWSSGKITCTGAT 118
Query: 99 HEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRY---SEY 154
E K+A+R++++ L++LG + + F N++GT ++ P + +N +Y + Y
Sbjct: 119 SEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAM--PWGIKIVNFSEKYKKDASY 176
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
P G+ K+ +PR T F +G + + G
Sbjct: 177 EPELHPGVTYKLHSPRATLKIFSTGSITVTG 207
>gi|269986164|gb|EEZ92477.1| TATA-box binding family protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 180
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V +IS+ + LN++ ++ ++YNP +F GL+ + + T L F SGKL+ G +
Sbjct: 11 NVVASISLKVQIPLNKL-KKLPNTKYNPEQFPGLVFRFPDMHVTFLVFGSGKLVCTGGRS 69
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPG 157
+ D K A + K LK++G + +N+V + ++ LDLN+I + +EYNP
Sbjct: 70 KEDIKTAMARLLKELKKVGVTVRSVWKIDIQNIVASGNLNRSLDLNKIAYNIDETEYNPE 129
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
+F GL+ K++N + T L F +GK++ GAK+ + A + +K+
Sbjct: 130 QFPGLVYKLVNSKITFLLFGTGKIVCTGAKNVEEIDEAIKILITAIKK 177
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V +IS+ + LN++ ++ ++YNP +F GL+ + + T L F SGKL+ G +
Sbjct: 10 ENVVASISLKVQIPLNKL-KKLPNTKYNPEQFPGLVFRFPDMHVTFLVFGSGKLVCTGGR 68
Query: 188 HEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ D K A + K LK++G ++ I NIV + ++ + L+ + + + + Y
Sbjct: 69 SKEDIKTAMARLLKELKKVGVTVRSVWKIDIQNIVASGNLNRSLDLNKIAYNIDE-TEYN 127
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL+Y++V ++ L+F G+I
Sbjct: 128 PEQFPGLVYKLVNSKITFLLFGTGKI 153
>gi|448451667|ref|ZP_21592967.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448483665|ref|ZP_21605812.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448514240|ref|ZP_21616992.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448526080|ref|ZP_21619698.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445692908|gb|ELZ45077.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445699280|gb|ELZ51311.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445810523|gb|EMA60548.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445820680|gb|EMA70489.1| transcription factor [Halorubrum arcis JCM 13916]
Length = 186
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 11/151 (7%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 241
+ L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 72 SIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 129
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 ---YEPEQFPGLVYRLDEPEVVALLFGSGKV 157
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK- 98
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 13 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 72
Query: 99 ----HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
HE + + + + PEI +N+V + +G L+LN I + +
Sbjct: 73 IEAVHES-LDIVFDELRALQIPIEDPEIT---VQNIVTSADLGESLNLNAIAIGLGLEHI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGK+++ G D A + L LG
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTSPEDAAAAVDVIVEELNGLG 183
>gi|448427036|ref|ZP_21583589.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445679083|gb|ELZ31564.1| transcription factor [Halorubrum terrestre JCM 10247]
Length = 186
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 11/151 (7%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 241
+ L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 72 SIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 129
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 ---YEPEQFPGLVYRLDEPEVVALLFGSGKV 157
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK- 98
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 13 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 72
Query: 99 ----HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
HE + + + + PEI +N+V + +G L+LN I + +
Sbjct: 73 IEAVHES-LDIVFDELRALQIPIEDPEIT---VQNIVTSADLGESLNLNAIAIGLGLEHI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGK+++ G D + A + L LG
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTTPADAEAAVDVIVEELNGLG 183
>gi|448433649|ref|ZP_21585976.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445686241|gb|ELZ38577.1| transcription factor [Halorubrum tebenquichense DSM 14210]
Length = 186
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTGAN 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 241
+ + L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 72 SIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 129
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 ---YEPEQFPGLVYRLDEPEVVALLFGSGKV 157
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 13 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTGANS 72
Query: 100 EH----DCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSE 153
+ + + + PEI +N+V + +G L+LN I + + E
Sbjct: 73 IEAVHGSLDIVFEELRALQIPIEDPEIT---VQNIVTSADLGESLNLNAIAIGLGLEHIE 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P +F GL+ ++ P L F SGK+++ G D + A + L LG
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTSPADAEAAVDVIVEELNGLG 183
>gi|307181017|gb|EFN68791.1| TATA box-binding protein-like protein 1 [Camponotus floridanus]
Length = 304
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCL 174
P + N+V + SV C L+L +I S V Y N G+I MK+ P TT
Sbjct: 70 EPPELDIVINNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTAS 124
Query: 175 AFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA 234
+ SGK+ GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+
Sbjct: 125 IWSSGKVTCTGATSEIQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITL 184
Query: 235 LHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
H + + YEPEL PG+ Y++ + + L IF G +
Sbjct: 185 FSVHHKENADYEPELHPGVTYKLKELKATLKIFSTGSV 222
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 95
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 80 NVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTCT 134
Query: 96 GAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGT--ISVGCPLDLNQINSRVRY 151
GA E K+A+R+FA+ L++LG ++ F +R N++GT + + L ++ +
Sbjct: 135 GATSEIQAKIAARRFARSLQKLGF-KVRFNNYRVVNVLGTCCMPFAIKITLFSVHHK-EN 192
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
++Y P G+ K+ + T F +G + +
Sbjct: 193 ADYEPELHPGVTYKLKELKATLKIFSTGSVTVTA 226
>gi|389845649|ref|YP_006347888.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448616732|ref|ZP_21665442.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388242955|gb|AFK17901.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445751387|gb|EMA02824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 189
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L+ L P+ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLEIVFDKLRDLQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPSVVALLFGSGKL 157
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + L+ L PEI +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLEIVFDKLRDLQIPVDDDPEIT---VQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 195
EY P +F GL+ ++ P L F SGKL+I G K D A
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPQDAAAA 171
>gi|124485272|ref|YP_001029888.1| transcription factor [Methanocorpusculum labreanum Z]
gi|124362813|gb|ABN06621.1| TATA binding protein of transcription factor TFIID
[Methanocorpusculum labreanum Z]
Length = 189
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL + +++ +EYN +F G+++++ NP+ L F SGK+++ GAK
Sbjct: 13 NIVASTKVNDSLDLVALAAQIPGAEYNKQRFPGVVLRMQNPKIAALVFGSGKVVLTGAKS 72
Query: 100 EHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
+ +LK+ L +P + +N+V + +G ++LN+I
Sbjct: 73 LENLTKGLEYLVALLKELKINILDNPT---YTVQNIVTSADLGSRINLNKIAMSFNLDKI 129
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
EY P +F GL+ ++ +P+ L F SGKL+I G K D K A +K
Sbjct: 130 EYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITGGKKTADAKKAVKKI 176
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 84/151 (55%), Gaps = 8/151 (5%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDL + +++ +EYN +F G+++++ NP+ L F SGK+++ GA
Sbjct: 11 IENIVASTKVNDSLDLVALAAQIPGAEYNKQRFPGVVLRMQNPKIAALVFGSGKVVLTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS-- 243
K + +LK+L + + + + NIV + D+ + L+ + F+
Sbjct: 71 KSLENLTKGLEYLVALLKELKINILDNPTYTVQNIVTSADLGSRIN---LNKIAMSFNLD 127
Query: 244 --SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 128 KIEYEPEQFPGLVYRLDDPKVVVLLFGSGKL 158
>gi|448578919|ref|ZP_21644278.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448589307|ref|ZP_21649466.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445724847|gb|ELZ76474.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445735735|gb|ELZ87283.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L++L P+ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLGIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPSVVALLFGSGKL 157
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + L++L PEI +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLGIVFDKLRELQIPVDDDPEIT---VQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D A L LG
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPEDAAAAVDVIISRLSDLG 183
>gi|20089077|ref|NP_615152.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638263|sp|Q8TU94.1|TBP2_METAC RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|19913938|gb|AAM03632.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 185
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 127 FRNMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V + + DL ++ ++ ++ + YN KF GL+ +I NP+ L F SGK++ G
Sbjct: 7 IENIVASTRLAEDFDLQKLLDTGLKGAVYNKNKFPGLVYRIENPKAAFLIFASGKVVCTG 66
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--NIVCTCDVRFPVKLDA-LHHVHSQF 242
K+ + ++A A L +G+ Y +IH N+V + ++R + L+A L +
Sbjct: 67 TKNVENSRIALFNLANELNSIGYKGIYLKPEIHVQNVVASANLRTSLNLNAVLSAFGVEN 126
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPGL+Y++ PRVV+L+F G++
Sbjct: 127 VEYEPEVFPGLVYKLADPRVVVLVFRTGKL 156
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 40 NMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+V + + DL ++ ++ ++ + YN KF GL+ +I NP+ L F SGK++ G K
Sbjct: 9 NIVASTRLAEDFDLQKLLDTGLKGAVYNKNKFPGLVYRIENPKAAFLIFASGKVVCTGTK 68
Query: 99 HEHDCKLASRKFAKILKQLGH------PEIIFFFFRNMVGTISVGCPLDLNQINSR--VR 150
+ + ++A A L +G+ PEI +N+V + ++ L+LN + S V
Sbjct: 69 NVENSRIALFNLANELNSIGYKGIYLKPEI---HVQNVVASANLRTSLNLNAVLSAFGVE 125
Query: 151 YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P F GL+ K+ +PR L F++GKL+I G K DC+ R L LG
Sbjct: 126 NVEYEPEVFPGLVYKLADPRVVVLVFRTGKLVITGGKCPEDCEEGLRIIKTQLDNLG 182
>gi|433591131|ref|YP_007280627.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448334667|ref|ZP_21523835.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|433305911|gb|AGB31723.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445619396|gb|ELY72936.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+G L+L + ++ ++Y+P +F GL+ + NP++ L F+SGK++ GAK
Sbjct: 12 NVVASTSIGQELELESVAMDLKGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
+ L++L +PEII +N+V + +G L+LN I +
Sbjct: 72 TDAVHESLHIVFDKLRELQIQVEKNPEII---VQNIVSSADLGRTLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL++ G K D K A L++LG
Sbjct: 129 EYEPEQFPGLVYRLDQPEVVALLFGSGKLVVTGGKKGDDAKQAVDVITTRLEELG 183
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+G L+L + ++ ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTSIGQELELESVAMDLKGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K + L++L + K + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDAVHESLHIVFDKLRELQIQVEKNPEIIVQNIVSSADLGRTLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDQPEVVALLFGSGKL 157
>gi|448536157|ref|ZP_21622402.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445702600|gb|ELZ54544.1| transcription factor [Halorubrum hochstenium ATCC 700873]
Length = 186
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTGAN 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 241
+ + L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 72 SIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGKSLNLNAIAIGLGLEHIE-- 129
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 ---YEPEQFPGLVYRLDEPEVVALLFGSGKV 157
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 13 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTGANS 72
Query: 100 EH----DCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSE 153
+ + + + PEI +N+V + +G L+LN I + + E
Sbjct: 73 IEAVHGSLDIVFEELRALQIPIEDPEIT---VQNIVTSADLGKSLNLNAIAIGLGLEHIE 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P +F GL+ ++ P L F SGK+++ G D + A + L LG
Sbjct: 130 YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTSPADAEAAVDVIVEELNGLG 183
>gi|48477578|ref|YP_023284.1| transcription factor [Picrophilus torridus DSM 9790]
gi|56749679|sp|Q6L1R1.1|TBP_PICTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48430226|gb|AAT43091.1| TATA-box binding protein [Picrophilus torridus DSM 9790]
Length = 184
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+ LDL++I + SEY P +F GLI ++ P+T L F+SGK+ GAK+
Sbjct: 11 NIVASTSLAEHLDLSKIALALEGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTGAKN 70
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSR--VRYS 152
D K LK+ +P+II +N+V + L+L I +
Sbjct: 71 LDDVKKTIDIIIDKLKKADIEVYDNPDII---VQNIVAVYDLESNLNLTDIAMSLGLENV 127
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGK++ GAK E++ + A K K L+++G
Sbjct: 128 EYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCTGAKEENEIEQAVIKVKKDLQKVG 182
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+ LDL++I + SEY P +F GLI ++ P+T L F+SGK+ GA
Sbjct: 9 IENIVASTSLAEHLDLSKIALALEGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTGA 68
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKL-DALHHVHSQFSS 244
K+ D K LK+ + + NIV D+ + L D + +
Sbjct: 69 KNLDDVKKTIDIIIDKLKKADIEVYDNPDIIVQNIVAVYDLESNLNLTDIAMSLGLENVE 128
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VVLL+F +G++
Sbjct: 129 YEPEQFPGLVYRVEEPKVVLLLFGSGKV 156
>gi|448457842|ref|ZP_21595847.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445810143|gb|EMA60174.1| transcription factor [Halorubrum lipolyticum DSM 21995]
Length = 185
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 11/152 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHS 240
+ L++L PI+ + NIV + D+ + L+A L H+
Sbjct: 70 NSIEAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE- 128
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 129 ----YEPEQFPGLVYRIDEPDVVALLFGSGKL 156
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK- 98
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 71
Query: 99 ----HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
HE L + K+ + PEI +N+V + +G L+LN I + +
Sbjct: 72 IEAVHES-LDLVFDELRKLQIPIEDPEIT---VQNIVTSADLGESLNLNAIAIGLGLEHI 127
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P L F SGKL++ G D A + L LG
Sbjct: 128 EYEPEQFPGLVYRIDEPDVVALLFGSGKLVVTGGTSPDDAAAAVDVIVEELDGLG 182
>gi|448503146|ref|ZP_21612913.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445693155|gb|ELZ45315.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 241
+ + L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 72 SIDAVYESLDIVFEELRALQIPIEDPEVTVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 129
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 ---YEPEQFPGLVYRLDEPDVVALLFGSGKV 157
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 13 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 72
Query: 100 ----EHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSE 153
+ + + + PE+ +N+V + +G L+LN I + + E
Sbjct: 73 IDAVYESLDIVFEELRALQIPIEDPEVT---VQNIVTSADLGESLNLNAIAIGLGLEHIE 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P +F GL+ ++ P L F SGK+++ G D A + L LG
Sbjct: 130 YEPEQFPGLVYRLDEPDVVALLFGSGKVVVTGGTSPEDAAAAVDVIVEELDGLG 183
>gi|333986797|ref|YP_004519404.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
gi|333824941|gb|AEG17603.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
Length = 184
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + ++G L+L ++ + EYN +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 12 ENIVASATLGKSLELPKVAPALEGVEYNVEQFPGLVYKLKEPKTAALIFGSGKLVCTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 246
+ A ++ L I ++ KI NIV + ++ + L+A+ + + + YE
Sbjct: 72 SIENSIKAIHIAVDKMRSLDPDIPHEFEIKIQNIVASANLMSTLNLEAVA-MDLENTEYE 130
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL+YR+ +P+VVLL+F +G++
Sbjct: 131 PEQFPGLVYRLGEPKVVLLLFGSGKV 156
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G L+L ++ + EYN +F GL+ K+ P+T L F SGKL+ GAK
Sbjct: 13 NIVASATLGKSLELPKVAPALEGVEYNVEQFPGLVYKLKEPKTAALIFGSGKLVCTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFF---FRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
+ A ++ L P+I F +N+V + ++ L+L + + +EY P
Sbjct: 73 IENSIKAIHIAVDKMRSL-DPDIPHEFEIKIQNIVASANLMSTLNLEAVAMDLENTEYEP 131
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
+F GL+ ++ P+ L F SGK++ GAK + D +L K + L +L
Sbjct: 132 EQFPGLVYRLGEPKVVLLLFGSGKVVCTGAKSKEDAQLGVEKTKERLIEL 181
>gi|448488858|ref|ZP_21607457.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445695479|gb|ELZ47582.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 13/152 (8%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 71
Query: 188 H-EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHS 240
E + FA+ L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 72 SIEAVHESLDIVFAE-LRALQIPIEDPKITVQNIVTSADLGESLNLNAIAIGLGLEHIE- 129
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 ----YEPEQFPGLVYRLDDPEVVALLFGSGKV 157
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK- 98
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 13 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 72
Query: 99 ----HEH-DCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRY 151
HE D A + +I + P+I +N+V + +G L+LN I + +
Sbjct: 73 IEAVHESLDIVFAELRALQI--PIEDPKIT---VQNIVTSADLGESLNLNAIAIGLGLEH 127
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGK+++ G D A + L LG
Sbjct: 128 IEYEPEQFPGLVYRLDDPEVVALLFGSGKVVVTGGTTPDDAAAAVDVIVEELNGLG 183
>gi|379335155|gb|AFD03144.1| 2-alkenal reductase [uncultured bacterium W5-77b]
Length = 186
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ LDL I + E++P F G + ++ NP+T L F++GK++ G+K
Sbjct: 12 NVVASATIDQKLDLKDITMKFPDVEWHPDMFPGAVFRLKNPKTATLLFRTGKMVCTGSKS 71
Query: 100 EHDCKLASRKFAKILKQLGHPEI---IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNP 156
E + A + + L++ G +I +N+V +I++G + L Q + S Y P
Sbjct: 72 EEIARKAVKTVVQELRK-GKIKIKKEATVTIQNIVASINLGGRVHLEQAARTLPRSMYEP 130
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192
+F GLI ++L+P+T L F SGKL+ G K E D
Sbjct: 131 EQFPGLIHRVLDPKTVILIFSSGKLVCTGGKTEKDV 166
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++ LDL I + E++P F G + ++ NP+T L F++GK++ G+
Sbjct: 10 IENVVASATIDQKLDLKDITMKFPDVEWHPDMFPGAVFRLKNPKTATLLFRTGKMVCTGS 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
K E + A + + L++ IK + I NIV + ++ V L+ + S Y
Sbjct: 70 KSEEIARKAVKTVVQELRKGKIKIKKEATVTIQNIVASINLGGRVHLEQAARTLPR-SMY 128
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPE FPGLI+R++ P+ V+LIF +G++
Sbjct: 129 EPEQFPGLIHRVLDPKTVILIFSSGKL 155
>gi|357625409|gb|EHJ75865.1| tata-box binding protein [Danaus plexippus]
Length = 314
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKL 181
I N+V + SV C L+L QI E+ + +G++ MK+ P TT + SG++
Sbjct: 87 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFR--RENGMVTMKLRRPYTTASIWSSGRV 144
Query: 182 LILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQ 241
GA E K+A+R++A+ L++LG ++++ F++ N++ TC + F +++ A + +
Sbjct: 145 TCTGATSEDQAKVAARRYARALQKLGFQVRFRNFRVVNVLGTCRMPFGIRIIAFSKKYKE 204
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNG 270
+ YEPEL PG+ Y++ P+ L IF G
Sbjct: 205 -ADYEPELHPGVTYKLYNPKATLKIFSTG 232
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 90/173 (52%), Gaps = 7/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L QI E+ + +G++ MK+ P TT + SG++ GA
Sbjct: 93 NVVCSFSVKCHLNLRQIALNGVNVEFR--RENGMVTMKLRRPYTTASIWSSGRVTCTGAT 150
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYSEYNP 156
E K+A+R++A+ L++LG ++ F FR N++GT + + + + + + ++Y P
Sbjct: 151 SEDQAKVAARRYARALQKLGF-QVRFRNFRVVNVLGTCRMPFGIRIIAFSKKYKEADYEP 209
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 209
G+ K+ NP+ T F +G + I A+ D + A + ++ + P
Sbjct: 210 ELHPGVTYKLYNPKATLKIFSTGGVTIT-ARSVSDVQSAVERIFPLVYEFRKP 261
>gi|268324523|emb|CBH38111.1| TATA-box binding protein 2 [uncultured archaeon]
Length = 183
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + LDL + S++ + + KF GL+ + P++ L F+SGK++ GAK
Sbjct: 10 NVVANARITESLDLEYVESQLEEAMFTKKKFPGLVYRTKEPKSAFLIFRSGKVVCTGAKT 69
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
+ ++ K + L+ +G HPE F +N+V + +G L+L I +
Sbjct: 70 KEGVRVVMDKLSTDLRGIGIEVEEHPE---FKVQNIVASADLGKELNLGAIVMGLELEGM 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 193
EY P F GL+ +I +P++ L F SGKL+I G K DCK
Sbjct: 127 EYEPEVFPGLVYRITDPKSAILIFSSGKLVITGGKTLDDCK 167
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + LDL + S++ + + KF GL+ + P++ L F+SGK++ GA
Sbjct: 8 IENVVANARITESLDLEYVESQLEEAMFTKKKFPGLVYRTKEPKSAFLIFRSGKVVCTGA 67
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDAL-HHVHSQFSS 244
K + ++ K + L+ +G + ++ FK+ NIV + D+ + L A+ + +
Sbjct: 68 KTKEGVRVVMDKLSTDLRGIGIEVEEHPEFKVQNIVASADLGKELNLGAIVMGLELEGME 127
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPGL+YR+ P+ +LIF +G++
Sbjct: 128 YEPEVFPGLVYRITDPKSAILIFSSGKL 155
>gi|448301779|ref|ZP_21491769.1| transcription factor [Natronorubrum tibetense GA33]
gi|445583403|gb|ELY37734.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P F GL+ + NP++ L F+SGK++ GA
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPENFPGLVYRTQNPKSAALIFRSGKIVCTGANS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
+ L++L PEII +N+V + +G L+LN I +
Sbjct: 72 TEAVHGSLNVVFDKLRELQIQVEEDPEII---VQNIVSSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P L F SGKL++ G K D K A K L+ LG
Sbjct: 129 EYEPEQFPGLVYRIDEPEVVALLFGSGKLVVTGGKQIEDAKQAVDVIVKRLEDLG 183
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P F GL+ + NP++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPENFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
+ L++L ++ + NIV + D+ + L+A+ + +
Sbjct: 70 NSTEAVHGSLNVVFDKLRELQIQVEEDPEIIVQNIVSSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRIDEPEVVALLFGSGKL 157
>gi|355571954|ref|ZP_09043162.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
gi|354825050|gb|EHF09285.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
Length = 184
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+ +DL +I+SR+ N +F G + ++ P+ CL F SGK+++ G
Sbjct: 11 IENIVASGSIADSIDLAEISSRIENCMLNRKRFPGAVFRLEKPKAVCLVFSSGKIVLTGL 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDAL-HHVHSQFSS 244
+ + A + +K G + + I NIVC+ D + L+ L ++ +
Sbjct: 71 REKEALDEAISRIVSAMKDAGVRVHSRPLVTITNIVCSYDAGKIINLNKLVVTLNMENIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ PR+V L+F +G+I
Sbjct: 131 YEPEQFPGLVYRLKDPRIVALLFSSGKI 158
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 14/183 (7%)
Query: 30 GQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 89
G +NR N+V + S+ +DL +I+SR+ N +F G + ++ P+ CL F S
Sbjct: 3 GTENRSLKIENIVASGSIADSIDLAEISSRIENCMLNRKRFPGAVFRLEKPKAVCLVFSS 62
Query: 90 GKLLILGAKHEHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQ 144
GK+++ G + + A + +K G P N+V + G ++LN+
Sbjct: 63 GKIVLTGLREKEALDEAISRIVSAMKDAGVRVHSRP---LVTITNIVCSYDAGKIINLNK 119
Query: 145 --INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKI 202
+ + EY P +F GL+ ++ +PR L F SGK+++ G K+ + R+ A +
Sbjct: 120 LVVTLNMENIEYEPEQFPGLVYRLKDPRIVALLFSSGKIILTGGKNLDEI----RRGADL 175
Query: 203 LKQ 205
L+Q
Sbjct: 176 LEQ 178
>gi|347963631|ref|XP_001687775.2| AGAP000336-PA [Anopheles gambiae str. PEST]
gi|333467108|gb|EDO64342.2| AGAP000336-PA [Anopheles gambiae str. PEST]
Length = 533
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKL 181
I N+V + SV C L+L I E+ + +G++ MK+ P TT + SGK+
Sbjct: 244 IDIVINNVVCSFSVRCHLNLRDIALYGDNVEFR--RENGMVTMKLRRPYTTASIWSSGKI 301
Query: 182 LILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQ 241
GA E K+A+R++++ L++LG ++ + F+I N++ TC + + +K+ + +
Sbjct: 302 TCTGATSEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKK 361
Query: 242 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+SYEPEL PG+ Y++ PR L IF G I
Sbjct: 362 DASYEPELHPGVTYKLHSPRATLKIFSTGSI 392
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 98
N+V + SV C L+L I E+ + +G++ MK+ P TT + SGK+ GA
Sbjct: 250 NVVCSFSVRCHLNLRDIALYGDNVEFR--RENGMVTMKLRRPYTTASIWSSGKITCTGAT 307
Query: 99 HEHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRY---SEY 154
E K+A+R++++ L++LG + + F N++GT ++ P + +N +Y + Y
Sbjct: 308 SEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAM--PWGIKIVNFSEKYKKDASY 365
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
P G+ K+ +PR T F +G + + A
Sbjct: 366 EPELHPGVTYKLHSPRATLKIFSTGSITVTAAS 398
>gi|16517082|gb|AAL24503.1|AF418015_1 TATA box-binding protein-like protein [Crypthecodinium cohnii]
Length = 220
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
++ ++ C +DL Q+ +R++EYNP K L ++++ PR T + SG + I G
Sbjct: 47 TIMAKFNLRCEIDLRQLAFALRHAEYNPRKHSSLTLRLVEPRATAMVRSSGVVSITGVLD 106
Query: 189 EHDCKLASRKFAKILKQLG---HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
+ K +++K A+++++ G +K+ GF I +I+ + FP++LD L + + Y
Sbjct: 107 LDELKQSAKKVARLVQRSGEGHEKVKFAGFTICSILAKASMGFPIRLDQLAAKWRRNALY 166
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL+ G I+R +P+ L+ G++
Sbjct: 167 EPELYCGCIFRTTRPKCTYLLTSGGKV 193
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 37 TNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
T ++ ++ C +DL Q+ +R++EYNP K L ++++ PR T + SG + I G
Sbjct: 44 TAFTIMAKFNLRCEIDLRQLAFALRHAEYNPRKHSSLTLRLVEPRATAMVRSSGVVSITG 103
Query: 97 AKHEHDCKLASRKFAKILKQ--LGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVRYS 152
+ K +++K A+++++ GH ++ F F +++ S+G P+ L+Q+ ++ R +
Sbjct: 104 VLDLDELKQSAKKVARLVQRSGEGHEKVKFAGFTICSILAKASMGFPIRLDQLAAKWRRN 163
Query: 153 E-YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
Y P + G I + P+ T L GK++I G ++ D A ++ IL +
Sbjct: 164 ALYEPELYCGCIFRTTRPKCTYLLTSGGKVMISGFRNMEDVHEAVQRIYPILAEF 218
>gi|110669284|ref|YP_659095.1| transcription factor [Haloquadratum walsbyi DSM 16790]
gi|385804848|ref|YP_005841248.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
gi|109627031|emb|CAJ53507.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
DSM 16790]
gi|148508283|gb|ABQ76067.1| TATA-binding transcription initiation factor [uncultured
haloarchaeon]
gi|339730340|emb|CCC41669.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
Length = 186
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQKPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + + L+ L +P+I +N+V + +G L+LN I +
Sbjct: 72 TTDVRESLHIVFDKLRDLRIPVSDNPDIT---VQNIVTSADLGEDLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ NP L F SGKL+I G K D + A L +LG
Sbjct: 129 EYEPEQFPGLVYRLDNPAVVALLFGSGKLVITGGKEPDDAREAVDVILSRLDELG 183
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQKPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + + L+ L P+ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTTDVRESLHIVFDKLRDLRIPVSDNPDITVQNIVTSADLGEDLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDNPAVVALLFGSGKL 157
>gi|292654337|ref|YP_003534234.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433428869|ref|ZP_20407252.1| transcription factor [Haloferax sp. BAB2207]
gi|448293881|ref|ZP_21483984.1| transcription factor [Haloferax volcanii DS2]
gi|448543937|ref|ZP_21625398.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551097|ref|ZP_21629239.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448558528|ref|ZP_21633085.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448573579|ref|ZP_21641062.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448597726|ref|ZP_21654651.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595869|sp|D4GZA2.1|TBP1_HALVD RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|291371886|gb|ADE04113.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432195411|gb|ELK51946.1| transcription factor [Haloferax sp. BAB2207]
gi|445569802|gb|ELY24373.1| transcription factor [Haloferax volcanii DS2]
gi|445706079|gb|ELZ57966.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710653|gb|ELZ62451.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445712280|gb|ELZ64062.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718485|gb|ELZ70175.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445739187|gb|ELZ90696.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 189
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L++L P+ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPSVVALLFGSGKL 157
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + L++L PEI +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLEIVFDKLRELQIPVDDDPEIT---VQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A L +LG
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKQPTDAEAAVDVIISRLSELG 183
>gi|222481174|ref|YP_002567410.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222454550|gb|ACM58813.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 181
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 129 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+VG+ +G LDL + + Y EY+P +HGL +++ ++SGK +I G
Sbjct: 7 NIVGSGDLGVELDLEALEGDLSTPYLEYDPSNYHGLYVRLEEGGPLITVYRSGKYIISGC 66
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ--GFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 243
E + + F + L +LG + Q GF + N+VCT + V L+AL + + +
Sbjct: 67 PSEEVLRKTNDGFLRALAELGITDEAQQTGFTVQNVVCTAMLNEMVSLNALSIGLGLEVT 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR VLL+F NG++
Sbjct: 127 EYEPEQFPGLVYRPEGIGAVLLVFANGKL 155
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 7/174 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
N+VG+ +G LDL + + Y EY+P +HGL +++ ++SGK +I G
Sbjct: 7 NIVGSGDLGVELDLEALEGDLSTPYLEYDPSNYHGLYVRLEEGGPLITVYRSGKYIISGC 66
Query: 98 KHEHDCKLASRKFAKILKQLG---HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
E + + F + L +LG + F +N+V T + + LN I + +
Sbjct: 67 PSEEVLRKTNDGFLRALAELGITDEAQQTGFTVQNVVCTAMLNEMVSLNALSIGLGLEVT 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
EY P +F GL+ + L F +GKL+I GAK ++A +++L
Sbjct: 127 EYEPEQFPGLVYRPEGIGAVLLVFANGKLVITGAKDAETAEVAYNHLQSKVQEL 180
>gi|448606630|ref|ZP_21659056.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448622378|ref|ZP_21669072.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445738838|gb|ELZ90350.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445754460|gb|EMA05865.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 189
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L++L P+ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPSVVALLFGSGKL 157
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + L++L PEI +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLEIVFDKLRELQIPVDDDPEIT---VQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A L +LG
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKQPKDAEAAVDVIISRLSELG 183
>gi|448582755|ref|ZP_21646259.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445732403|gb|ELZ83986.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 189
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L++L P+ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPSVVALLFGSGKL 157
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + L++L PEI +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLEIVFDKLRELQIPVDDDPEIT---VQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A L +LG
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPEDAEAAVDVIISRLSELG 183
>gi|257076321|ref|ZP_05570682.1| transcription factor [Ferroplasma acidarmanus fer1]
Length = 184
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 12/176 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+ LDL++I + SEY P +F GLI ++ +P+T L F+SGK+ GAK+
Sbjct: 11 NIVASTSLAEHLDLSRIALALEGSEYEPEQFPGLIYRLKDPKTAVLIFRSGKVNCTGAKN 70
Query: 100 EHDCK------LASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLNQINSR--VRY 151
+ K + K AKI + +P+II +N+V + L+L I +
Sbjct: 71 LENVKKTIDIIIDKLKKAKI-EVYDNPDII---VQNIVAVYDLESDLNLTDIAMSLGLEN 126
Query: 152 SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P+ L F SGK++ GAK E + + A K K L+++G
Sbjct: 127 VEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVG 182
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+ LDL++I + SEY P +F GLI ++ +P+T L F+SGK+ GA
Sbjct: 9 IENIVASTSLAEHLDLSRIALALEGSEYEPEQFPGLIYRLKDPKTAVLIFRSGKVNCTGA 68
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKL-DALHHVHSQFSS 244
K+ + K LK+ + + NIV D+ + L D + +
Sbjct: 69 KNLENVKKTIDIIIDKLKKAKIEVYDNPDIIVQNIVAVYDLESDLNLTDIAMSLGLENVE 128
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VVLL+F +G++
Sbjct: 129 YEPEQFPGLVYRVEEPKVVLLLFGSGKV 156
>gi|198450906|ref|XP_002137175.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
gi|198131246|gb|EDY67733.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
Length = 642
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 125 FFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 184
RN+V + +VGC LDL+ I R +Y+ K L MK+ P T L + SG++
Sbjct: 239 ILIRNVVCSFNVGCQLDLSDIAQRGFNVKYH--KSRNLTMKLRRPAATALIWSSGRINCT 296
Query: 185 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 244
G E K+A+R+FA+ L +LG P +Q F+I ++ TC + + + + H + +
Sbjct: 297 GTTSEILAKVAARRFARCLWKLGFPTSFQNFRIETVLGTCRMPWDINIVNFSKKHPENAK 356
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+PE+ + Y+M P+ L IF G I
Sbjct: 357 QDPEMHWCVTYKMQMPKATLKIFTTGSI 384
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 10/153 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +VGC LDL+ I R +Y+ K L MK+ P T L + SG++ G
Sbjct: 243 NVVCSFNVGCQLDLSDIAQRGFNVKYH--KSRNLTMKLRRPAATALIWSSGRINCTGTTS 300
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGC--PLDLNQINSRVRYSE---Y 154
E K+A+R+FA+ L +LG P F FR + T+ C P D+N +N ++ E
Sbjct: 301 EILAKVAARRFARCLWKLGFP-TSFQNFR--IETVLGTCRMPWDINIVNFSKKHPENAKQ 357
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+P + K+ P+ T F +G + ++ A+
Sbjct: 358 DPEMHWCVTYKMQMPKATLKIFTTGSITVMAAR 390
>gi|448727075|ref|ZP_21709452.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|448737752|ref|ZP_21719787.1| transcription factor [Halococcus thailandensis JCM 13552]
gi|445792275|gb|EMA42886.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|445803308|gb|EMA53606.1| transcription factor [Halococcus thailandensis JCM 13552]
Length = 189
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 11/186 (5%)
Query: 30 GQKNRRGTNL-NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 88
Q + N+ N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+
Sbjct: 3 AQDPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFR 62
Query: 89 SGKLLILGAKHEHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN 143
SGK++ GAK D + L+ L PEI+ +N+V + + L+LN
Sbjct: 63 SGKIVCTGAKSTADVHESLEIVFDKLRDLEIRVEEDPEIV---VQNIVTSADLQKTLNLN 119
Query: 144 QINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 201
I + EY P +F GL+ ++ +P L F SGKL+I G K D + A K
Sbjct: 120 AIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPADAEHAVDKITD 179
Query: 202 ILKQLG 207
L +LG
Sbjct: 180 RLDELG 185
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 12 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L+ L ++ + NIV + D++ + L+A+ + +
Sbjct: 72 KSTADVHESLEIVFDKLRDLEIRVEEDPEIVVQNIVTSADLQKTLNLNAIAIGLGLENIE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 132 YEPEQFPGLVYRLDDPEVVALLFGSGKL 159
>gi|448687445|ref|ZP_21693811.1| transcription factor [Haloarcula japonica DSM 6131]
gi|445780096|gb|EMA30999.1| transcription factor [Haloarcula japonica DSM 6131]
Length = 182
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 129 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N VG+ +G LD+ ++ S + Y+EYNP +HGL ++++ ++SGK +I G
Sbjct: 6 NAVGSRDLGVELDVAEVKSDLDLPYTEYNPSNYHGLYLRLVADGPLITVYRSGKYIISGC 65
Query: 187 KHEHDCKLASRKFAKILKQLG--HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 243
+ F L +L + FK+ N+VCT + PV L+ L + +
Sbjct: 66 STLEQLYETNGAFLTALSELDIVNAETETRFKVQNVVCTAQLDDPVDLNTLSVALGLESV 125
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGLIYR VLL+F NG+I
Sbjct: 126 EYEPEQFPGLIYRPADHPAVLLVFANGKI 154
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
N VG+ +G LD+ ++ S + Y+EYNP +HGL ++++ ++SGK +I G
Sbjct: 6 NAVGSRDLGVELDVAEVKSDLDLPYTEYNPSNYHGLYLRLVADGPLITVYRSGKYIISGC 65
Query: 98 KHEHDCKLASRKFAKILKQLG--HPEI-IFFFFRNMVGTISVGCPLDLNQINSR--VRYS 152
+ F L +L + E F +N+V T + P+DLN ++ +
Sbjct: 66 STLEQLYETNGAFLTALSELDIVNAETETRFKVQNVVCTAQLDDPVDLNTLSVALGLESV 125
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
EY P +F GLI + + L F +GK++I G D A F + +Q+
Sbjct: 126 EYEPEQFPGLIYRPADHPAVLLVFANGKIVITGGS---DVATAEDAFKHLQEQV 176
>gi|448441657|ref|ZP_21589264.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445688693|gb|ELZ40944.1| transcription factor [Halorubrum saccharovorum DSM 1137]
Length = 185
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHS 240
+ L++L PI+ + NIV + D+ + L+A L H+
Sbjct: 70 NSIDAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE- 128
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 129 ----YEPEQFPGLVYRIDDPDVVALLFGSGKL 156
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK- 98
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 71
Query: 99 ----HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
HE L + K+ + PEI +N+V + +G L+LN I + +
Sbjct: 72 IDAVHES-LDLVFDELRKLQIPIEDPEIT---VQNIVTSADLGESLNLNAIAIGLGLEHI 127
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I +P L F SGKL+I G D A + L LG
Sbjct: 128 EYEPEQFPGLVYRIDDPDVVALLFGSGKLVITGGTTPDDAAAAVDVIVEELDGLG 182
>gi|448475876|ref|ZP_21603231.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|445816094|gb|EMA66003.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 185
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHS 240
+ L+ L PI + NIV + D+ + L+A L H+
Sbjct: 70 SSIDAVHESLAIVFDELRALQIPIDDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE- 128
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 129 ----YEPEQFPGLVYRLDEPDVVALLFGSGKL 156
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK- 98
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGASS 71
Query: 99 ----HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
HE + + + + PEI +N+V + +G L+LN I + +
Sbjct: 72 IDAVHES-LAIVFDELRALQIPIDDPEIT---VQNIVTSADLGESLNLNAIAIGLGLEHI 127
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL++ G D A + L LG
Sbjct: 128 EYEPEQFPGLVYRLDEPDVVALLFGSGKLVVTGGTTPDDAAAAVDVIVEELTGLG 182
>gi|448462784|ref|ZP_21597843.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445818005|gb|EMA67873.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 185
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHS 240
+ L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 70 NSIDAVHESLALVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE- 128
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 129 ----YEPEQFPGLVYRIDEPDVVALLFGSGKL 156
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK- 98
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 71
Query: 99 ----HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
HE L + + + PEI +N+V + +G L+LN I + +
Sbjct: 72 IDAVHES-LALVFDELRALQIPIEDPEIT---VQNIVTSADLGESLNLNAIAIGLGLEHI 127
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P L F SGKL++ G D A + L LG
Sbjct: 128 EYEPEQFPGLVYRIDEPDVVALLFGSGKLVVTGGTSPDDAAAAVDVIVEELDGLG 182
>gi|448417264|ref|ZP_21579282.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445678487|gb|ELZ30980.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 187
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + + L+ L PEI +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLELVFEKLRALQIPVEDDPEIT---VQNIVTSADLGRDLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G K D + A + L LG
Sbjct: 129 EYEPEQFPGLVYRLDSPDVVALLFGSGKLVITGGKQPSDAEKAVDEIVSRLSDLG 183
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + + L+ L P++ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLELVFEKLRALQIPVEDDPEITVQNIVTSADLGRDLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDSPDVVALLFGSGKL 157
>gi|240102886|ref|YP_002959195.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
gi|239910440|gb|ACS33331.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
Length = 182
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V +I + +D+ ++ S++ +YNP F G + K+ + T L F SGKL+ GAK
Sbjct: 10 NVVASIDLHGEIDVEKVASKLDSVQYNPSVFPGAVYKMESFGVTFLIFYSGKLVCTGAKS 69
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGC-PLDLNQINSRVRYSE 153
+ A+ K + L+ + G PEI +N+V +G LDL+ + + E
Sbjct: 70 VETIRKATEKLKRTLESMGMKFKGEPEIQ---VQNIVAAGDLGFGTLDLDIVALTLPNVE 126
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P F G++ ++ N R T L F SGK+++ GA+ E D + A + + ++ G
Sbjct: 127 YEPEIFPGVVYRVRNSRMTILIFNSGKVVVSGARTEEDIRRAVEELTRDFEKYG 180
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V +I + +D+ ++ S++ +YNP F G + K+ + T L F SGKL+ GAK
Sbjct: 9 ENVVASIDLHGEIDVEKVASKLDSVQYNPSVFPGAVYKMESFGVTFLIFYSGKLVCTGAK 68
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRF-PVKLDALHHVHSQFS 243
+ A+ K + L+ +G +K++G ++ NIV D+ F + LD +
Sbjct: 69 SVETIRKATEKLKRTLESMG--MKFKGEPEIQVQNIVAAGDLGFGTLDLDIVALTLPNV- 125
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPG++YR+ R+ +LIF +G++
Sbjct: 126 EYEPEIFPGVVYRVRNSRMTILIFNSGKV 154
>gi|435846586|ref|YP_007308836.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|433672854|gb|AGB37046.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
Length = 185
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 11/151 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + G DL + + ++Y+P F G++ +I P++ L F +GK++ G+
Sbjct: 10 IENVVASGDTGREFDLQTLAEDLDNAQYDPKTFPGIVYRIDEPKSAGLIFHTGKVVCTGS 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHS 240
K D + ++LG I+ F + NIV + D+ + + L+A L +
Sbjct: 70 KSVEDINKSVESIFNAFERLGISIEENPFTVQNIVSSADLGYSLNLNAVAVGLGLGQIE- 128
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 271
YEPE FPGL+YR+ +P VV L+F +G+
Sbjct: 129 ----YEPEQFPGLVYRLDEPDVVALLFGSGK 155
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + G DL + + ++Y+P F G++ +I P++ L F +GK++ G+K
Sbjct: 12 NVVASGDTGREFDLQTLAEDLDNAQYDPKTFPGIVYRIDEPKSAGLIFHTGKVVCTGSKS 71
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS--EYNP 156
D + ++LG E F +N+V + +G L+LN + + EY P
Sbjct: 72 VEDINKSVESIFNAFERLGISIEENPFTVQNIVSSADLGYSLNLNAVAVGLGLGQIEYEP 131
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F GL+ ++ P L F SGK +I G D A A L+ LG
Sbjct: 132 EQFPGLVYRLDEPDVVALLFGSGKTVITGGTEVQDATNAVNVIASKLEDLG 182
>gi|154151222|ref|YP_001404840.1| transcription factor [Methanoregula boonei 6A8]
gi|153999774|gb|ABS56197.1| TATA-box binding [Methanoregula boonei 6A8]
Length = 184
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + +DLN+++++++ E N +F G + +I NP+ L F SGK+++ G
Sbjct: 11 IENVVASGVIAESIDLNEVSAKIKSCELNTKRFPGAVYRIENPKIASLIFSSGKVVLTGI 70
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLD-ALHHVHSQFSS 244
+ + K K LK+ G ++ I NIVC+ D+ + L+ + ++ +
Sbjct: 71 RDDKALKDGLAIIIKSLKEAGVETLEKPRVNITNIVCSYDIGKYINLNKVVVTLNLENIE 130
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P++V L+F +G+I
Sbjct: 131 YEPEQFPGLVYRIKDPKIVALLFSSGKI 158
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 10/161 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + +DLN+++++++ E N +F G + +I NP+ L F SGK+++ G +
Sbjct: 13 NVVASGVIAESIDLNEVSAKIKSCELNTKRFPGAVYRIENPKIASLIFSSGKVVLTGIRD 72
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
+ K K LK+ G P + N+V + +G ++LN++ +
Sbjct: 73 DKALKDGLAIIIKSLKEAGVETLEKPRV---NITNIVCSYDIGKYINLNKVVVTLNLENI 129
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 193
EY P +F GL+ +I +P+ L F SGK+++ G K+ D K
Sbjct: 130 EYEPEQFPGLVYRIKDPKIVALLFSSGKIILTGGKNLDDIK 170
>gi|313124795|ref|YP_004035059.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286783|ref|ZP_21478002.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312291160|gb|ADQ65620.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445573322|gb|ELY27844.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 187
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D + L+ L P+I +N+V + +G L+LN I +
Sbjct: 72 TDDVHESLNLVFDKLRALQIPVDDEPDIT---VQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G KH D + A + L LG
Sbjct: 129 EYEPEQFPGLVYRLDSPDVVALLFGSGKLVITGGKHPSDAEGAVDEIVSRLSDLG 183
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L+ L P+ + + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDDVHESLNLVFDKLRALQIPVDDEPDITVQNIVTSADLGRNLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDSPDVVALLFGSGKL 157
>gi|219851944|ref|YP_002466376.1| transcription factor [Methanosphaerula palustris E1-9c]
gi|219546203|gb|ACL16653.1| TATA-box binding family protein [Methanosphaerula palustris E1-9c]
Length = 186
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 6/173 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + V LDL I S++ +EY+ +F G++++I +P+ L F SGK+++ GAK
Sbjct: 13 NIVASAKVTDHLDLPAIASQLEGAEYDKKRFPGVVIRIKDPKIAALVFNSGKVVLTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLGHPEII---FFFFRNMVGTISVGCPLDLNQINS--RVRYSEY 154
+ +L+ +G EI + +N+V + +G ++LN+I + EY
Sbjct: 73 IDILDRGIALLSDMLRAIGV-EIDGTPTYTVQNIVTSADLGSTINLNKIAVGFNLNKIEY 131
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ +P+ L F SGK++I G KH D + A ++ L LG
Sbjct: 132 EPEQFPGLVYRLDDPKVVLLLFGSGKMIITGGKHTVDAERAVQRIMSDLTGLG 184
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + V LDL I S++ +EY+ +F G++++I +P+ L F SGK+++ GA
Sbjct: 11 IENIVASAKVTDHLDLPAIASQLEGAEYDKKRFPGVVIRIKDPKIAALVFNSGKVVLTGA 70
Query: 187 KHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS-- 243
K + +L+ +G I + + NIV + D+ + L + + F+
Sbjct: 71 KSIDILDRGIALLSDMLRAIGVEIDGTPTYTVQNIVTSADLGSTINL---NKIAVGFNLN 127
Query: 244 --SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VVLL+F +G++
Sbjct: 128 KIEYEPEQFPGLVYRLDDPKVVLLLFGSGKM 158
>gi|47205581|emb|CAF96147.1| unnamed protein product [Tetraodon nigroviridis]
gi|47224248|emb|CAG09094.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V T C L+L I Y P + + MK+ PR T + SGK++ GA
Sbjct: 15 NVVATFRTRCHLNLRTIALEGNNVIYKPEQ-GTVTMKLRKPRITANIWSSGKIICTGASS 73
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E + K+ +R+ A+ L++LG + + FK+ N++ TC + F + L + ++YEPE
Sbjct: 74 EDEAKMGARRLARCLQKLGFKVSFSAFKVVNVMATCAMPFKISLIDFTKRNRPIATYEPE 133
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
L P +Y M P+ + +F G +
Sbjct: 134 LHPAAMYTMRHPKATVKVFATGSV 157
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T C L+L I Y P + + MK+ PR T + SGK++ GA
Sbjct: 15 NVVATFRTRCHLNLRTIALEGNNVIYKPEQ-GTVTMKLRKPRITANIWSSGKIICTGASS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E + K+ +R+ A+ L++LG ++ F F+ N++ T ++ + L R R + Y P
Sbjct: 74 EDEAKMGARRLARCLQKLGF-KVSFSAFKVVNVMATCAMPFKISLIDFTKRNRPIATYEP 132
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+ + +P+ T F +G + ILG
Sbjct: 133 ELHPAAMYTMRHPKATVKVFATGSVTILG 161
>gi|10803661|ref|NP_046059.1| transcription factor [Halobacterium sp. NRC-1]
gi|169237306|ref|YP_001690512.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|169237349|ref|YP_001690554.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|14423947|sp|O52018.1|TBPD_HALSA RecName: Full=TATA-box-binding protein D; AltName: Full=Box
A-binding protein D; Short=BAP D; AltName: Full=TATA
sequence-binding protein D; Short=TBP D; AltName:
Full=TATA-box factor D
gi|2822392|gb|AAC82898.1| TbpD [Halobacterium sp. NRC-1]
gi|167728372|emb|CAP15175.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|167728865|emb|CAP15756.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + L L Q+ + + +EYNPG F G+I ++ +P++ L F SGK + GA
Sbjct: 10 IENVVASTDLSQELALEQLATDLPGAEYNPGDFPGVIYRLDDPKSATLIFDSGKAVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
+ D A + L+ LG I + NIVC+ + + L+A+ + +
Sbjct: 70 QSVDDVHDAISIVVEDLRDLGIDIPPSPPVHVQNIVCSGSLDQDLNLNAIAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV+L+F +G++
Sbjct: 130 YEPEQFPGLVYRLNDPDVVVLLFGSGKL 157
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + L L Q+ + + +EYNPG F G+I ++ +P++ L F SGK + GA+
Sbjct: 12 NVVASTDLSQELALEQLATDLPGAEYNPGDFPGVIYRLDDPKSATLIFDSGKAVCTGAQS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D A + L+ LG P +N+V + S+ L+LN I + EY
Sbjct: 72 VDDVHDAISIVVEDLRDLGIDIPPSPPVHVQNIVCSGSLDQDLNLNAIAIGLGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ +P L F SGKL+I G + D A + L LG
Sbjct: 132 PEQFPGLVYRLNDPDVVVLLFGSGKLVITGGSNPDDAHHALEIIHERLTDLG 183
>gi|448732580|ref|ZP_21714852.1| transcription factor [Halococcus salifodinae DSM 8989]
gi|445804522|gb|EMA54773.1| transcription factor [Halococcus salifodinae DSM 8989]
Length = 191
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V + +G +DL + + ++++PG+F GLI + + + TCL F+SG + GA+
Sbjct: 17 QNVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPDDAKATCLIFRSGAITCTGAQ 76
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYE 246
+ + L +LG ++ + NIV D+ + L+A+ + + YE
Sbjct: 77 SIEEVQETVHTAVGALVELGIDVEAPDVTVQNIVSGADLGETLNLNAIAIGLGLESVEYE 136
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL+YR+ P VV L+F +G++
Sbjct: 137 PEQFPGLVYRLDDPDVVALLFGSGKM 162
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G +DL + + ++++PG+F GLI + + + TCL F+SG + GA+
Sbjct: 18 NVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPDDAKATCLIFRSGAITCTGAQS 77
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYNP 156
+ + L +LG E +N+V +G L+LN I + EY P
Sbjct: 78 IEEVQETVHTAVGALVELGIDVEAPDVTVQNIVSGADLGETLNLNAIAIGLGLESVEYEP 137
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+F GL+ ++ +P L F SGK++I GAK + + A + + L LG
Sbjct: 138 EQFPGLVYRLDDPDVVALLFGSGKMVITGAKIHDEAEAALEEIIRRLNDLG 188
>gi|432328919|ref|YP_007247063.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
gi|432135628|gb|AGB04897.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
Length = 181
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+ GAK
Sbjct: 8 NIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGAKD 67
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSR--VRYS 152
+ + LK G +P+I+ +N+V +G L+L I +
Sbjct: 68 IEKVEKTIKILVDKLKAAGIEVYDNPKIV---VQNIVAVYDLGVELNLTDIAMSLGLENV 124
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGK++ GAK + + A +K K L+ +G
Sbjct: 125 EYEPEQFPGLVYRIEEPKVVLLLFGSGKVVCTGAKKKEEIVEAIKKLKKELESVG 179
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 16/155 (10%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+ GA
Sbjct: 6 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGA 65
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--------NIVCTCDVRFPVKL-DALHH 237
K K K +K L +K G +++ NIV D+ + L D
Sbjct: 66 KD-------IEKVEKTIKILVDKLKAAGIEVYDNPKIVVQNIVAVYDLGVELNLTDIAMS 118
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ + YEPE FPGL+YR+ +P+VVLL+F +G++
Sbjct: 119 LGLENVEYEPEQFPGLVYRIEEPKVVLLLFGSGKV 153
>gi|10803647|ref|NP_046045.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120090|ref|NP_395678.1| transcription factor [Halobacterium sp. NRC-1]
gi|169237288|ref|YP_001690494.1| putative TATA-binding transcription initiation factor
[Halobacterium salinarum R1]
gi|169237331|ref|YP_001690536.1| putative TATA-binding transcription initiation factor
[Halobacterium salinarum R1]
gi|14423946|sp|O52004.1|TBPC_HALSA RecName: Full=TATA-box-binding protein C; AltName: Full=Box
A-binding protein C; Short=BAP C; AltName: Full=TATA
sequence-binding protein C; Short=TBP C; AltName:
Full=TATA-box factor C
gi|2822378|gb|AAC82884.1| TbpC [Halobacterium sp. NRC-1]
gi|10584194|gb|AAG20813.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|167728354|emb|CAP15158.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|167728847|emb|CAP15739.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 181
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 129 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+VG+ +G LD+ + + + YSEY+P +HGL +++ ++SGK +I G
Sbjct: 7 NIVGSGDLGVELDVEPLEADLSTPYSEYDPSNYHGLYVRLEENGPLITVYRSGKYIITGC 66
Query: 187 KHEHDCKLASRKFAKILKQLG--HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 243
+ +F +L LG GF + N+VCT + V L+AL + + +
Sbjct: 67 ASMESLHETNEEFLGMLADLGVTEEDTQTGFTVENVVCTAMLDELVSLNALAIGLGLEVT 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR + VLL+F NG++
Sbjct: 127 EYEPEQFPGLVYRPEEIGAVLLVFANGKM 155
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
N+VG+ +G LD+ + + + YSEY+P +HGL +++ ++SGK +I G
Sbjct: 7 NIVGSGDLGVELDVEPLEADLSTPYSEYDPSNYHGLYVRLEENGPLITVYRSGKYIITGC 66
Query: 98 KHEHDCKLASRKFAKILKQLGHPEI---IFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
+ +F +L LG E F N+V T + + LN I + +
Sbjct: 67 ASMESLHETNEEFLGMLADLGVTEEDTQTGFTVENVVCTAMLDELVSLNALAIGLGLEVT 126
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
EY P +F GL+ + L F +GK++I GAK + A F +++L
Sbjct: 127 EYEPEQFPGLVYRPEEIGAVLLVFANGKMVITGAKDTETAESAYEYFQSKVQEL 180
>gi|448611222|ref|ZP_21661856.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445743654|gb|ELZ95135.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 12/153 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDA------LHHVH 239
K + L++L P+ + NIV + D+ + L+A L H+
Sbjct: 70 KSTDGVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEHIE 129
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 -----YEPEQFPGLVYRLDEPSVVALLFGSGKL 157
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
+ L++L PEI +N+V + +G L+LN I + +
Sbjct: 72 TDGVHESLEIVFDKLRELQIPVDDDPEIT---VQNIVTSADLGENLNLNAIAIGLGLEHI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A L LG
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPQDAEDAVDVIMSRLSDLG 183
>gi|222481033|ref|YP_002567270.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222453935|gb|ACM58200.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 185
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHS 240
+ L+ L PI + NIV + D+ + L+A L H+
Sbjct: 70 NSIDAVHESLAIVFDELRGLQIPIDDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE- 128
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 129 ----YEPEQFPGLVYRIDEPDVVALLFGSGKL 156
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 12 NVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGANS 71
Query: 100 EHDCKLASRKFAKILKQL-------GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVR 150
A + +L PEI +N+V + +G L+LN I +
Sbjct: 72 ---IDAVHESLAIVFDELRGLQIPIDDPEIT---VQNIVTSADLGESLNLNAIAIGLGLE 125
Query: 151 YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
+ EY P +F GL+ +I P L F SGKL+I G D A + L LG
Sbjct: 126 HIEYEPEQFPGLVYRIDEPDVVALLFGSGKLVITGGTSPDDAAAAVDVIVEKLDGLG 182
>gi|407462989|ref|YP_006774306.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046611|gb|AFS81364.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 192
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+V + ++ LDL I + + EY+P +F G + ++ P+T L F SG ++ GAK
Sbjct: 11 VNVVASATIEQKLDLVDITKKFPHVEYHPEQFPGAVFRLQEPKTATLLFGSGNMVCTGAK 70
Query: 99 HEHDCKLASRKFAKILKQ-----LGHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSE 153
E A + L++ P++ +N+V +I++G ++L Q + S
Sbjct: 71 SEEMAIQAVNTVVRKLRKGRIKIKKEPKVTI---QNIVSSINLGGKVNLEQAARTLPRSM 127
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 205
Y P +F GLI ++L+P+T L F SGKL+ +GAK E + + + +L++
Sbjct: 128 YEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKEIHRSVNQIHSLLEE 179
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + ++ LDL I + + EY+P +F G + ++ P+T L F SG ++ GAK
Sbjct: 12 NVVASATIEQKLDLVDITKKFPHVEYHPEQFPGAVFRLQEPKTATLLFGSGNMVCTGAKS 71
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 247
E A + L++ IK + I NIV + ++ V L+ + S YEP
Sbjct: 72 EEMAIQAVNTVVRKLRKGRIKIKKEPKVTIQNIVSSINLGGKVNLEQAARTLPR-SMYEP 130
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPGLI+RM+ P+ V+LIF +G++
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKL 155
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 4 KRKNLKYGIGS-ACIGGG------QACFCLIRGGQKNR-------RGTNLNMVGTISVGC 49
K L +G G+ C G QA ++R +K R + T N+V +I++G
Sbjct: 53 KTATLLFGSGNMVCTGAKSEEMAIQAVNTVVRKLRKGRIKIKKEPKVTIQNIVSSINLGG 112
Query: 50 PLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRK 109
++L Q + S Y P +F GLI ++L+P+T L F SGKL+ +GAK E + + +
Sbjct: 113 KVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKEIHRSVNQ 172
Query: 110 FAKILKQ 116
+L++
Sbjct: 173 IHSLLEE 179
>gi|134045653|ref|YP_001097139.1| transcription factor [Methanococcus maripaludis C5]
gi|132663278|gb|ABO34924.1| TATA-box binding protein [Methanococcus maripaludis C5]
Length = 174
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 8/163 (4%)
Query: 39 LNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
+N+VG+ + P++L +I + SEY+P ++H + ++ + F+SGKL G+K
Sbjct: 9 VNVVGSCDLKTPMNLEKIYPLIENSEYDPERYHCIYIRTPGIKRLVTIFKSGKLNTAGSK 68
Query: 99 HEHDCKLASRKFAKILKQLG----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
+ K A + L +LG PE+ + N+V IS DL +I+ +EY
Sbjct: 69 SIEEAKSAVLEIVDKLNELGFTDKRPEVKIY---NIVANISFNKKFDLEEISENFG-AEY 124
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASR 197
P +F G+++KI +P+ T L F+SGK++I G K + + A R
Sbjct: 125 EPEQFPGVVLKINDPKATFLIFKSGKIVINGVKSNEELENAVR 167
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+VG+ + P++L +I + SEY+P ++H + ++ + F+SGKL G+K
Sbjct: 10 NVVGSCDLKTPMNLEKIYPLIENSEYDPERYHCIYIRTPGIKRLVTIFKSGKLNTAGSKS 69
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SSYEP 247
+ K A + L +LG K KI+NIV ++ F K D L + F + YEP
Sbjct: 70 IEEAKSAVLEIVDKLNELGFTDKRPEVKIYNIV--ANISFNKKFD-LEEISENFGAEYEP 126
Query: 248 ELFPGLIYRMVKPRVVLLIFVNGRI 272
E FPG++ ++ P+ LIF +G+I
Sbjct: 127 EQFPGVVLKINDPKATFLIFKSGKI 151
>gi|254167829|ref|ZP_04874678.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|254167914|ref|ZP_04874763.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623120|gb|EDY35686.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623205|gb|EDY35771.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
Length = 185
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+ GA
Sbjct: 10 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKI--HNIVCTCDVRFPVKL-DALHHVHSQFS 243
K + + LK G + Y KI NIV D+ + L D + +
Sbjct: 70 KDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLENV 128
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VVLL+F +G++
Sbjct: 129 EYEPEQFPGLVYRIDEPKVVLLLFGSGKV 157
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+ GAK
Sbjct: 12 NIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGAKD 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSR--VRYS 152
+ + LK G +P+I+ +N+V +G L+L I +
Sbjct: 72 IERVEKTIKILVDKLKAAGIEVYDNPKIV---VQNIVAVYDLGVELNLTDIAMSLGLENV 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGK++ GAK + + A +K K L+ +G
Sbjct: 129 EYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTGAKKKEEIVEAIKKLKKELENVG 183
>gi|289596646|ref|YP_003483342.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
gi|289534433|gb|ADD08780.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
Length = 181
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+ GAK
Sbjct: 8 NIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGAKD 67
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSR--VRYS 152
+ + LK G +P+I+ +N+V +G L+L I +
Sbjct: 68 IERVEKTIKILVDKLKAAGIEVYDNPKIV---VQNIVAVYDLGVELNLTDIAMSLGLENV 124
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ +I P+ L F SGK++ GAK + + A +K K L+ +G
Sbjct: 125 EYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTGAKKKEEIVEAIKKLKKELENVG 179
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+ GA
Sbjct: 6 IENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTGA 65
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKI--HNIVCTCDVRFPVKL-DALHHVHSQFS 243
K + + LK G + Y KI NIV D+ + L D + +
Sbjct: 66 KDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLENV 124
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VVLL+F +G++
Sbjct: 125 EYEPEQFPGLVYRIDEPKVVLLLFGSGKV 153
>gi|72133443|ref|XP_798726.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Strongylocentrotus purpuratus]
Length = 325
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 182
+ + N+V V C L+L +I EY ++ + M+ P T + SGK+
Sbjct: 98 VDIYINNVVCAFGVRCHLNLRRIGQYGSNVEYR-REYGKVNMRFRRPSATATIWSSGKIT 156
Query: 183 ILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 242
I G E K +R+ A+ L++LG ++ +K+ N++ TC + F +++ H
Sbjct: 157 ITGNDSEEHAKKNARRCARALQKLGFNVRLSKYKVVNVLGTCSMPFAIRIRDFSEKHQNS 216
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+SYEPEL P + Y++ +PR L IF G I
Sbjct: 217 ASYEPELHPAVTYKLYQPRATLKIFSTGSI 246
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V V C L+L +I EY ++ + M+ P T + SGK+ I G
Sbjct: 104 NVVCAFGVRCHLNLRRIGQYGSNVEYR-REYGKVNMRFRRPSATATIWSSGKITITGNDS 162
Query: 100 EHDCKLASRKFAKILKQLG-HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-EYNPG 157
E K +R+ A+ L++LG + + + N++GT S+ + + + + + S Y P
Sbjct: 163 EEHAKKNARRCARALQKLGFNVRLSKYKVVNVLGTCSMPFAIRIRDFSEKHQNSASYEPE 222
Query: 158 KFHGLIMKILNPRTTCLAFQSGKLLILG 185
+ K+ PR T F +G + +
Sbjct: 223 LHPAVTYKLYQPRATLKIFSTGSITVTA 250
>gi|409723661|ref|ZP_11270805.1| transcription factor [Halococcus hamelinensis 100A6]
gi|448722730|ref|ZP_21705261.1| transcription factor [Halococcus hamelinensis 100A6]
gi|445788867|gb|EMA39568.1| transcription factor [Halococcus hamelinensis 100A6]
Length = 189
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++ GA
Sbjct: 12 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALH-HVHSQF 242
K D + L+ L IK + + NIV + D++ + L+A+ + +
Sbjct: 72 KSTADVHESLEIVFDKLRDL--EIKVEDAPEIVVQNIVTSADLQKTLNLNAIAIGLGLEN 129
Query: 243 SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 IEYEPEQFPGLVYRLDDPEVVALLFGSGKL 159
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 30 GQKNRRGTNL-NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 88
Q + N+ N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+
Sbjct: 3 AQDPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFR 62
Query: 89 SGKLLILGAKHEHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN 143
SGK++ GAK D + L+ L PEI+ +N+V + + L+LN
Sbjct: 63 SGKIVCTGAKSTADVHESLEIVFDKLRDLEIKVEDAPEIV---VQNIVTSADLQKTLNLN 119
Query: 144 QINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
I + EY P +F GL+ ++ +P L F SGKL+I G K D + A K
Sbjct: 120 AIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPADAEHAVDKI 177
>gi|248883|gb|AAB22100.1| transcription factor IID, TFIID [Saccharomyces cerevisiae=yeast,
Peptide Partial Mutant, 61 aa]
Length = 61
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 218 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
NIV +CDV+FP++L+ L H FSSYEPELFPGLIYRMVKP++VL IFV+G+I
Sbjct: 1 QNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLFIFVSGKI 55
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 128 RNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+VG+ V P+ L + S +S Y P F GLI +++ P+ F SGK+++ GA
Sbjct: 1 QNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLFIFVSGKIVLTGA 60
Query: 187 K 187
K
Sbjct: 61 K 61
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 40 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ V P+ L + S +S Y P F GLI +++ P+ F SGK+++ GAK
Sbjct: 2 NIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLFIFVSGKIVLTGAK 61
>gi|341581911|ref|YP_004762403.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus sp. 4557]
gi|340809569|gb|AEK72726.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus sp. 4557]
Length = 179
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V +I + +D+ ++ S++ YNP F G + K+ + T L F SGKL+ GAK
Sbjct: 7 NVVASIDLHGGIDVEKVASKLDSVHYNPSVFPGAVYKMESFGVTFLIFYSGKLVCTGAKS 66
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGC-PLDLNQINSRVRYSE 153
+ A+ K + L+ + G PEI +N+V +G LDL+ + + E
Sbjct: 67 VETIRKATEKLKRTLEAMGMKFRGEPEI---QVQNIVAAGDLGLGTLDLDIVALTLPNVE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P F G++ ++ N R T L F SG++++ GA+ E D K A + + ++ G
Sbjct: 124 YEPEIFPGVVYRVKNSRMTVLIFNSGRVVVSGARTEEDIKRAVEELTRDFEKYG 177
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V +I + +D+ ++ S++ YNP F G + K+ + T L F SGKL+ GAK
Sbjct: 6 ENVVASIDLHGGIDVEKVASKLDSVHYNPSVFPGAVYKMESFGVTFLIFYSGKLVCTGAK 65
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRF-PVKLDALHHVHSQFS 243
+ A+ K + L+ +G +K++G ++ NIV D+ + LD +
Sbjct: 66 SVETIRKATEKLKRTLEAMG--MKFRGEPEIQVQNIVAAGDLGLGTLDLDIVALTLPNVE 123
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPG++YR+ R+ +LIF +GR+
Sbjct: 124 -YEPEIFPGVVYRVKNSRMTVLIFNSGRV 151
>gi|448349348|ref|ZP_21538190.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|445640591|gb|ELY93678.1| transcription factor [Natrialba taiwanensis DSM 12281]
Length = 186
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + L+L Q+ + ++YNP F GL+ + P+ L F+SGK++ GA
Sbjct: 12 NVVASTGIDQELNLEQVGDDLPEADYNPEHFPGLVYRTQEPKAAALIFRSGKIVCTGASS 71
Query: 100 EHDCKLASRKFAKILKQLG--HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
E + + ++L+ LG PE +N+V +I G +LN I + EY
Sbjct: 72 EPAVRESLSIVFEVLRGLGIDIPESPTIEVQNIVASIDFGSQFNLNAIAIGLGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ +P L F SGK +I GAK A+ L LG
Sbjct: 132 PEQFPGLVYRLDDPSAVALLFGSGKAIITGAKTTDAVTHATNAVETRLTDLG 183
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + L+L Q+ + ++YNP F GL+ + P+ L F+SGK++ GA
Sbjct: 10 IENVVASTGIDQELNLEQVGDDLPEADYNPEHFPGLVYRTQEPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
E + + ++L+ LG I + ++ NIV + D L+A+ + +
Sbjct: 70 SSEPAVRESLSIVFEVLRGLGIDIPESPTIEVQNIVASIDFGSQFNLNAIAIGLGLEDVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGR 271
YEPE FPGL+YR+ P V L+F +G+
Sbjct: 130 YEPEQFPGLVYRLDDPSAVALLFGSGK 156
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 213 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ KI N+V + + + L+ + + + Y PE FPGL+YR +P+ LIF +G+I
Sbjct: 6 ETIKIENVVASTGIDQELNLEQVGDDLPE-ADYNPEHFPGLVYRTQEPKAAALIFRSGKI 64
>gi|448322383|ref|ZP_21511854.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445601591|gb|ELY55578.1| transcription factor [Natronococcus amylolyticus DSM 10524]
Length = 186
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + S+G LDL + + ++Y+P F GL+ + +P++ L F+SGK++ GAK
Sbjct: 12 NVVASSSIGQELDLQSLAMDLEGADYDPENFPGLVYRTTDPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
+ + + + L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 IENVHESLKIVFEELRDLQIEVKEGPEIV---VQNIVSSADLGRNLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL++ G K D + A + L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDEPNVVALLFGSGKLVVTGGKEVDDARQAIDVIVERLEDLG 183
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + S+G LDL + + ++Y+P F GL+ + +P++ L F+SGK++ GA
Sbjct: 10 IENVVASSSIGQELDLQSLAMDLEGADYDPENFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQGFKI--HNIVCTCDVRFPVKLDALH-HVHSQFS 243
K + + + + L+ L +K +G +I NIV + D+ + L+A+ + +
Sbjct: 70 KSIENVHESLKIVFEELRDLQIEVK-EGPEIVVQNIVSSADLGRNLNLNAIAIGLGLENI 128
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 129 EYEPEQFPGLVYRLDEPNVVALLFGSGKL 157
>gi|448730744|ref|ZP_21713048.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|445792921|gb|EMA43516.1| transcription factor [Halococcus saccharolyticus DSM 5350]
Length = 191
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK- 98
N+V + +G +DL + + ++++PG+F GLI + + TCL F+SGK+ GA
Sbjct: 18 NVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPADAAATCLLFRSGKITCTGAGS 77
Query: 99 ----HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
HE +A A++ +G PE+ +N+V +G L+LN I +
Sbjct: 78 IEEVHET-VHVAVDALAELGIDVGTPEVT---VQNIVSGADLGERLNLNAIAIGLGLESV 133
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGK++I GAK + + A + + L LG
Sbjct: 134 EYEPEQFPGLVYRLDDPDVVALLFGSGKMVITGAKIHDNAEAALEEIIRRLNDLG 188
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V + +G +DL + + ++++PG+F GLI + + TCL F+SGK+ GA
Sbjct: 17 QNVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPADAAATCLLFRSGKITCTGAG 76
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYE 246
+ L +LG + + NIV D+ + L+A+ + + YE
Sbjct: 77 SIEEVHETVHVAVDALAELGIDVGTPEVTVQNIVSGADLGERLNLNAIAIGLGLESVEYE 136
Query: 247 PELFPGLIYRMVKPRVVLLIFVNGRI 272
PE FPGL+YR+ P VV L+F +G++
Sbjct: 137 PEQFPGLVYRLDDPDVVALLFGSGKM 162
>gi|118638415|gb|ABL09366.1| TATA-box binding protein alternative transcript cTBP2 [Gallus
gallus]
Length = 81
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 46/52 (88%)
Query: 221 VCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
V +CDV+FP++L+ L H QFSSYEPELFPGLIYRM+KPR+VLLIFV+G++
Sbjct: 1 VGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKV 52
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 42 VGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHE 100
VG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK
Sbjct: 1 VGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVR 60
Query: 101 HDCKLASRKFAKILK 115
+ A ILK
Sbjct: 61 AEIYEAFENIYPILK 75
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 131 VGTISVGCPLDLN-QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHE 189
VG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK
Sbjct: 1 VGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVR 60
Query: 190 HDCKLASRKFAKILK 204
+ A ILK
Sbjct: 61 AEIYEAFENIYPILK 75
>gi|452207289|ref|YP_007487411.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452083389|emb|CCQ36681.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + + L L+ + + S+Y+P F GLI + P+ L F+SGK++ GA
Sbjct: 10 IENVVASTDIDQELALDSLAMDLSGSDYDPDNFPGLIYRTQEPQAANLIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVH 239
D + + + L+ LG I+ + NIV + D+R + L+A L V
Sbjct: 70 NTVDDVHSSLQIVCETLRDLGIDVIEAPTITVQNIVSSADLRAQLNLNAIAIGFGLEDVE 129
Query: 240 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 130 -----YEPEQFPGLVYRLDTPDVVTLLFGSGKV 157
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + L L+ + + S+Y+P F GLI + P+ L F+SGK++ GA
Sbjct: 12 NVVASTDIDQELALDSLAMDLSGSDYDPDNFPGLIYRTQEPQAANLIFRSGKIVCTGANT 71
Query: 100 EHDCKLASRKFAKILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINS--RVRYSEYN 155
D + + + L+ LG E +N+V + + L+LN I + EY
Sbjct: 72 VDDVHSSLQIVCETLRDLGIDVIEAPTITVQNIVSSADLRAQLNLNAIAIGFGLEDVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P L F SGK++I GAK + A +K + L +LG
Sbjct: 132 PEQFPGLVYRLDTPDVVTLLFGSGKVVITGAKTPDAAEEALKKVSGELSELG 183
>gi|148224606|ref|NP_001083732.1| TATA box-binding protein-like protein 1 [Xenopus laevis]
gi|25091422|sp|Q9W6Z2.1|TBPL1_XENLA RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; Short=xlTLF
gi|4689078|emb|CAB41487.1| TBP-like factor [Xenopus laevis]
gi|58702024|gb|AAH90226.1| TLF protein [Xenopus laevis]
Length = 186
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%)
Query: 162 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 221
++MK+ PR T + SGK++ GA E + K+ +R+ A+ L++LG +K+ FK+ N++
Sbjct: 47 VLMKLRKPRITATIWSSGKIICTGATSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVL 106
Query: 222 CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
C + F ++L+ + +SYEPEL P + YR+ R L IF G I
Sbjct: 107 AVCTMPFEIRLNEFTKQNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 73 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NM 130
++MK+ PR T + SGK++ GA E + K+ +R+ A+ L++LG ++ F F+ N+
Sbjct: 47 VLMKLRKPRITATIWSSGKIICTGATSEEEAKVGARRLARSLQKLGF-QVKFTEFKVVNV 105
Query: 131 VGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+ ++ + LN+ + R ++ Y P + +I + R T F +G + + G
Sbjct: 106 LAVCTMPFEIRLNEFTKQNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|448564200|ref|ZP_21635901.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445717187|gb|ELZ68908.1| transcription factor [Haloferax prahovense DSM 18310]
Length = 157
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 149 VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 208
V +E+NP F GL+ + NPR L F+SGK++ GA + A + + L LG
Sbjct: 3 VDGAEFNPDNFPGLVYRTQNPRAANLIFRSGKIVCTGASSVDEVNRALDQVFEELGSLGI 62
Query: 209 PIK-YQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLI 266
PI + + NIV + D+ + L+AL + + YEPE FPGL+YR+ +P+VV+L+
Sbjct: 63 PIDDREEATVQNIVSSADLGTNLNLNALAIGLGLENVEYEPEQFPGLVYRIDEPKVVVLL 122
Query: 267 FVNGRI 272
F +G+I
Sbjct: 123 FGSGKI 128
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 60 VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 119
V +E+NP F GL+ + NPR L F+SGK++ GA + A + + L LG
Sbjct: 3 VDGAEFNPDNFPGLVYRTQNPRAANLIFRSGKIVCTGASSVDEVNRALDQVFEELGSLGI 62
Query: 120 P--EIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYNPGKFHGLIMKILNPRTTCLA 175
P + +N+V + +G L+LN I + EY P +F GL+ +I P+ L
Sbjct: 63 PIDDREEATVQNIVSSADLGTNLNLNALAIGLGLENVEYEPEQFPGLVYRIDEPKVVVLL 122
Query: 176 FQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
F SGK++I GAK + + + ++ LG
Sbjct: 123 FGSGKIVITGAKKVDYARETIQVVSDEIESLG 154
>gi|282164541|ref|YP_003356926.1| TATA-box-binding protein [Methanocella paludicola SANAE]
gi|282156855|dbj|BAI61943.1| TATA-box-binding protein [Methanocella paludicola SANAE]
Length = 188
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G +D S +Y+P +F G + + +PRT L F+SGK++ GAK
Sbjct: 15 NVVASTAIGHEIDDLTRVSLDMGGDYDPEQFPGSVYRTKDPRTASLIFRSGKIVCTGAKK 74
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
D K K + +G +PEI+ +N+V ++ +G L+LN I +
Sbjct: 75 VEDVGKGLDKVFKKMSSVGIKVMPNPEIVV---QNIVSSVDLGSVLNLNAIAIGLGLENI 131
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P+ L F SGKL++ G K D + A K L+ L
Sbjct: 132 EYEPEQFPGLVYRLDSPKVVVLLFGSGKLVVTGGKKPEDAEAAVDHIVKELEGLA 186
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++G +D S +Y+P +F G + + +PRT L F+SGK++ GA
Sbjct: 13 IENVVASTAIGHEIDDLTRVSLDMGGDYDPEQFPGSVYRTKDPRTASLIFRSGKIVCTGA 72
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D K K + +G + + NIV + D+ + L+A+ + +
Sbjct: 73 KKVEDVGKGLDKVFKKMSSVGIKVMPNPEIVVQNIVSSVDLGSVLNLNAIAIGLGLENIE 132
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P+VV+L+F +G++
Sbjct: 133 YEPEQFPGLVYRLDSPKVVVLLFGSGKL 160
>gi|10803585|ref|NP_045983.1| transcription factor [Halobacterium sp. NRC-1]
gi|10803718|ref|NP_046116.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120020|ref|NP_395608.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120342|ref|NP_395930.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423949|sp|Q48325.1|TBPB_HALSA RecName: Full=TATA-box-binding protein B; AltName: Full=Box
A-binding protein B; Short=BAP B; AltName: Full=TATA
sequence-binding protein B; Short=TBP B; AltName:
Full=TATA-box factor B
gi|1070345|emb|CAA63691.1| TATA box binding protein [Halobacterium salinarum]
gi|2822316|gb|AAC82822.1| TbpB [Halobacterium sp. NRC-1]
gi|2822449|gb|AAC82955.1| TbpB [Halobacterium sp. NRC-1]
gi|10584112|gb|AAG20743.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|10584490|gb|AAG21065.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G L L+Q+++ + +EYNP F G++ ++ P++ L F+SGK++ GA
Sbjct: 10 IENVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D A +++LG + ++ NIV + + + L+A+ + +
Sbjct: 70 KSVDDVHEALGIVFGDIRELGIDVTSNPPIEVQNIVSSASLEQSLNLNAIAIGLGLEQIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV+L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVVLLFGSGKL 157
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G L L+Q+++ + +EYNP F G++ ++ P++ L F+SGK++ GAK
Sbjct: 12 NVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
D A +++LG +P I +N+V + S+ L+LN I +
Sbjct: 72 VDDVHEALGIVFGDIRELGIDVTSNPPI---EVQNIVSSASLEQSLNLNAIAIGLGLEQI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I G ++ + + A L +LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGQNPDEAEQALAHVQDRLTELG 183
>gi|16120311|ref|NP_395899.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423950|sp|Q9HHE9.1|TBPF_HALSA RecName: Full=TATA-box-binding protein F; AltName: Full=Box
A-binding protein F; Short=BAP F; AltName: Full=TATA
sequence-binding protein F; Short=TBP F; AltName:
Full=TATA-box factor F
gi|10584455|gb|AAG21034.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G L L+Q+ + + +EYNP F G++ ++ P++ L F+SGK++ GA
Sbjct: 10 IENVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K A L++LG + K+ NIV + + + L+A+ + +
Sbjct: 70 KSVDAVHDALEIVFDDLRELGIDVDSTPPVKVQNIVSSASLEQSLNLNAIAIGLGLEQIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV+L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDDPDVVVLLFGSGKL 157
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G L L+Q+ + + +EYNP F G++ ++ P++ L F+SGK++ GAK
Sbjct: 12 NVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
A L++LG P + +N+V + S+ L+LN I +
Sbjct: 72 VDAVHDALEIVFDDLRELGIDVDSTPPV---KVQNIVSSASLEQSLNLNAIAIGLGLEQI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ +P L F SGKL+I GA D + A L +LG
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGAAESADAQHALAHVNDRLTELG 183
>gi|432945913|ref|XP_004083749.1| PREDICTED: TATA box-binding protein-like protein 1-like [Oryzias
latipes]
Length = 187
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Query: 118 GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 177
+ E + N+V T C L+L I Y P + ++MK+ PR T +
Sbjct: 4 SNDEAVDIIITNVVATFRTRCHLNLRTIALEGINVIYKP-EVGKVLMKLRKPRITASIWS 62
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SGK++ GA E + KL +R+ A+ L++LG +++ FK+ N++ C + F + L
Sbjct: 63 SGKIICTGATSEDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFSIHLVDFTK 122
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +SYEPEL P YR+ + + +F G +
Sbjct: 123 NNRPIASYEPELHPAATYRIKNIKATVQVFSTGSL 157
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T C L+L I Y P + ++MK+ PR T + SGK++ GA
Sbjct: 15 NVVATFRTRCHLNLRTIALEGINVIYKP-EVGKVLMKLRKPRITASIWSSGKIICTGATS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E + KL +R+ A+ L++LG ++ F F+ N++ S+ + L R + Y P
Sbjct: 74 EDEAKLGARRLARCLQKLGF-KVRFSAFKVVNVLAVCSMPFSIHLVDFTKNNRPIASYEP 132
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+I N + T F +G L I G
Sbjct: 133 ELHPAATYRIKNIKATVQVFSTGSLTITG 161
>gi|45387857|ref|NP_991285.1| TATA box-binding protein-like protein 1 [Danio rerio]
gi|33323633|gb|AAQ07595.1|AF503448_1 TBP-like factor [Danio rerio]
Length = 186
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V C L+L I Y P + ++MK+ PR T + SGK++ GA
Sbjct: 15 NVVSVFRTRCHLNLRTIGLEGTNVIYKP-EVGKVLMKLRKPRITASIWSSGKIICTGATS 73
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E + KL SR+ A+ L+++G +++ FK+ N++ C + F ++L + +SYEPE
Sbjct: 74 EEEAKLGSRRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEPE 133
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
L P YR+ R + +F G I
Sbjct: 134 LHPAASYRIKNLRSTVQVFSTGNI 157
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V C L+L I Y P + ++MK+ PR T + SGK++ GA
Sbjct: 15 NVVSVFRTRCHLNLRTIGLEGTNVIYKP-EVGKVLMKLRKPRITASIWSSGKIICTGATS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E + KL SR+ A+ L+++G ++ F F+ N++ S+ + L + R + Y P
Sbjct: 74 EEEAKLGSRRLARCLQKMGF-KVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEP 132
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+I N R+T F +G + + G
Sbjct: 133 ELHPAASYRIKNLRSTVQVFSTGNITVTG 161
>gi|116202165|ref|XP_001226894.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88177485|gb|EAQ84953.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 84
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 47/54 (87%)
Query: 219 NIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
NIV +CD++FP++L+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+I
Sbjct: 3 NIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKI 56
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 39 LNMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 97
+N+VG+ + P+ L + S+ +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 2 VNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 61
Query: 98 KHEHDCKLASRKFAKILKQL 117
K + A +L+
Sbjct: 62 KVREEIYQAFEMIYPVLQDF 81
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+VG+ + P+ L + S+ +S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 3 NIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 62
Query: 188 HEHDCKLASRKFAKILKQL 206
+ A +L+
Sbjct: 63 VREEIYQAFEMIYPVLQDF 81
>gi|345006113|ref|YP_004808966.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344321739|gb|AEN06593.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 10 IENVVASTGIGLELDLQSVAMDLEGADYDPEQFPGLVYRTEEPKSAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKY-QGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K + L++L P++ + NIV + D+ + L+A+ + +
Sbjct: 70 KSTDAVHESLGIVFDELRKLDIPVEDGPEITVQNIVSSADLGESLNLNAIAIGLGLENIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLEEPDVVALLFGSGKL 157
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GAK
Sbjct: 12 NVVASTGIGLELDLQSVAMDLEGADYDPEQFPGLVYRTEEPKSAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYS-- 152
+ L++L PEI +N+V + +G L+LN I +
Sbjct: 72 TDAVHESLGIVFDELRKLDIPVEDGPEIT---VQNIVSSADLGESLNLNAIAIGLGLENI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL+I G K D + A ++ L LG
Sbjct: 129 EYEPEQFPGLVYRLEEPDVVALLFGSGKLVITGGKTPADAEDAIDVISERLTDLG 183
>gi|52345772|ref|NP_001004932.1| TATA box-binding protein-like protein 1 [Xenopus (Silurana)
tropicalis]
gi|82183480|sp|Q6DIY4.1|TBPL1_XENTR RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|49522390|gb|AAH75401.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
gi|89272095|emb|CAJ81743.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
Length = 186
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 64/111 (57%)
Query: 162 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 221
++MK+ PR T + SGK++ GA E + K+ +R+ A+ L++LG +K+ FK+ N++
Sbjct: 47 VLMKLRKPRITATIWSSGKIICTGATSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVL 106
Query: 222 CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
C + F ++L + +SYEPEL P + YR+ R L IF G I
Sbjct: 107 AVCTMPFEIRLAEFTKQNRPHASYEPELHPAVCYRIKSLRTTLQIFSTGSI 157
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 73 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NM 130
++MK+ PR T + SGK++ GA E + K+ +R+ A+ L++LG ++ F F+ N+
Sbjct: 47 VLMKLRKPRITATIWSSGKIICTGATSEEEAKVGARRLARSLQKLGF-QVKFTEFKVVNV 105
Query: 131 VGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+ ++ + L + + R ++ Y P + +I + RTT F +G + + G
Sbjct: 106 LAVCTMPFEIRLAEFTKQNRPHASYEPELHPAVCYRIKSLRTTLQIFSTGSITVTG 161
>gi|448316268|ref|ZP_21505884.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445608768|gb|ELY62595.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+VG+ S+ LDL + + YNP +F GL+ + NP+ T L F+SGK++ GA
Sbjct: 10 VENVVGSTSLEQELDLESLADDLDRVSYNPDQFPGLVSRTTNPKATSLIFRSGKVVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
D + L++LG + G + N+V + D+ + L+A+ + +
Sbjct: 70 SSVEDLTESVELTLDKLRELGLQVPADPGVTLQNMVTSGDLGTRLNLNAIAIGLGLEAVE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR V+L+F +G++
Sbjct: 130 YEPEQFPGLVYRPDDLDAVVLLFGSGKL 157
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 4/172 (2%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+VG+ S+ LDL + + YNP +F GL+ + NP+ T L F+SGK++ GA
Sbjct: 12 NVVGSTSLEQELDLESLADDLDRVSYNPDQFPGLVSRTTNPKATSLIFRSGKVVCTGASS 71
Query: 100 EHDCKLASRKFAKILKQLGH--PEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYSEYN 155
D + L++LG P +NMV + +G L+LN I + EY
Sbjct: 72 VEDLTESVELTLDKLRELGLQVPADPGVTLQNMVTSGDLGTRLNLNAIAIGLGLEAVEYE 131
Query: 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ + + L F SGKL+I G D + A L LG
Sbjct: 132 PEQFPGLVYRPDDLDAVVLLFGSGKLVITGGTQHSDAEDAIESVQMRLTDLG 183
>gi|20094275|ref|NP_614122.1| transcription factor [Methanopyrus kandleri AV19]
gi|24638238|sp|Q8TX38.1|TBP_METKA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|19887315|gb|AAM02052.1| Transcription initiation factor TFIID (TATA-binding protein)
[Methanopyrus kandleri AV19]
Length = 185
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 16/180 (8%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + ++L++ S + EY P +F GL+ ++ + T L F+SGK++ GAK+
Sbjct: 5 NIVASVDLKGEVNLDEC-SVILQGEYEPEQFPGLVYRLEDIGTVVLIFRSGKMVCTGAKN 63
Query: 100 EHDCKLASRKFAKILKQL------GHPEIIFFFFRNMVGTISVGCPLDLNQI------NS 147
+ + + L++ G PE+ +N+V +I PLDL+ I +
Sbjct: 64 REQIYKSVERVREDLEKKCGVKFHGEPEV---EIQNIVASIDFHVPLDLDTIAEVLVGDE 120
Query: 148 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
V EY P +F GL++++ P+ L F SGK + GAK E + + A +K A+ +++ G
Sbjct: 121 DVEGIEYEPEQFPGLVLRLREPKVAMLLFYSGKAVCTGAKTEEEPEKAVKKIAEKIEKYG 180
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 12/154 (7%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V ++ + ++L++ S + EY P +F GL+ ++ + T L F+SGK++ GA
Sbjct: 3 IQNIVASVDLKGEVNLDEC-SVILQGEYEPEQFPGLVYRLEDIGTVVLIFRSGKMVCTGA 61
Query: 187 KH-EHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHV---- 238
K+ E K R + K+ G +K+ G +I NIV + D P+ LD + V
Sbjct: 62 KNREQIYKSVERVREDLEKKCG--VKFHGEPEVEIQNIVASIDFHVPLDLDTIAEVLVGD 119
Query: 239 -HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 271
+ YEPE FPGL+ R+ +P+V +L+F +G+
Sbjct: 120 EDVEGIEYEPEQFPGLVLRLREPKVAMLLFYSGK 153
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 215 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+I NIV + D++ V LD + YEPE FPGL+YR+ V+LIF +G++
Sbjct: 1 MEIQNIVASVDLKGEVNLDECSVILQ--GEYEPEQFPGLVYRLEDIGTVVLIFRSGKM 56
>gi|359417767|ref|ZP_09209836.1| transcription factor [Candidatus Haloredivivus sp. G17]
gi|358031860|gb|EHK00695.1| transcription factor [Candidatus Haloredivivus sp. G17]
Length = 182
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + + L L++I + +EY P +F GL+ ++ NP+ L F SGK++ G K
Sbjct: 11 NVVASATFNQRLPLDRIAIYLENTEYEPEQFPGLVYRLENPKAAALLFGSGKVVCTGTKS 70
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
K A+ K L++ P++ +N+V + + L+LN+I + +EY
Sbjct: 71 PEQAKEATHKIIDELREADVEIDTKPDVT---VQNIVASSQLEGTLNLNRIAFELVGTEY 127
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P+ L F SG L+ G + D K K + LK++G
Sbjct: 128 EPEQFPGLVYRLDEPQVVFLLFSSGNLVCTGGRTYEDVKEGIAKLEENLKEIG 180
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
+N+V + + L L++I + +EY P +F GL+ ++ NP+ L F SGK++ G
Sbjct: 9 IQNVVASATFNQRLPLDRIAIYLENTEYEPEQFPGLVYRLENPKAAALLFGSGKVVCTGT 68
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLD--ALHHVHSQFS 243
K K A+ K L++ I + + NIV + + + L+ A V ++
Sbjct: 69 KSPEQAKEATHKIIDELREADVEIDTKPDVTVQNIVASSQLEGTLNLNRIAFELVGTE-- 126
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV L+F +G +
Sbjct: 127 -YEPEQFPGLVYRLDEPQVVFLLFSSGNL 154
>gi|328719261|ref|XP_003246709.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Acyrthosiphon pisum]
gi|328719263|ref|XP_003246710.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Acyrthosiphon pisum]
Length = 288
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 162 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNI 220
L+MK+ P T + + SGK++ +G+ E+D K+AS++ A+I+++LG+ K+ FKI N+
Sbjct: 90 LVMKLRKPSATAIIWSSGKIVCIGSASEYDSKIASKRIARIIQRLGYSDAKFSSFKIINV 149
Query: 221 VCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +C + F +++ + S YEPEL PG+ YR+ + + L I+ G I
Sbjct: 150 LGSCSLPFSIRIIQFSEKYKLNSQYEPELNPGVTYRIKEFKATLKIYSTGSI 201
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 73 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NM 130
L+MK+ P T + + SGK++ +G+ E+D K+AS++ A+I+++LG+ + F F+ N+
Sbjct: 90 LVMKLRKPSATAIIWSSGKIVCIGSASEYDSKIASKRIARIIQRLGYSDAKFSSFKIINV 149
Query: 131 VGTISVGCPLDLNQINSRVRY-SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHE 189
+G+ S+ + + Q + + + S+Y P G+ +I + T + +G + + A E
Sbjct: 150 LGSCSLPFSIRIIQFSEKYKLNSQYEPELNPGVTYRIKEFKATLKIYSTGSITV-NASSE 208
Query: 190 HDCKLA 195
+LA
Sbjct: 209 AIVQLA 214
>gi|328704605|ref|XP_003242546.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Acyrthosiphon pisum]
Length = 301
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 162 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNI 220
L MK+ P T + SGK+ G+ E K+ASR+FA+I+++LG H K+ ++I N+
Sbjct: 97 LTMKLRKPNATATIWSSGKIACTGSTSESHAKIASRRFARIIQKLGYHNAKFSSYRIVNV 156
Query: 221 VCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +C + FP+K+ + + YEPEL PG+ +++ + + L IF G I
Sbjct: 157 LGSCSLPFPIKVIQFSEKYKTIAQYEPELHPGVTFKIKELKATLKIFSTGSI 208
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 73 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NM 130
L MK+ P T + SGK+ G+ E K+ASR+FA+I+++LG+ F +R N+
Sbjct: 97 LTMKLRKPNATATIWSSGKIACTGSTSESHAKIASRRFARIIQKLGYHNAKFSSYRIVNV 156
Query: 131 VGTISVGCPLDLNQINSRVRY-SEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+G+ S+ P+ + Q + + + ++Y P G+ KI + T F +G + +
Sbjct: 157 LGSCSLPFPIKVIQFSEKYKTIAQYEPELHPGVTFKIKELKATLKIFSTGSITVTA 212
>gi|82179859|sp|Q5U385.1|TBPL1_DANRE RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|55250384|gb|AAH85661.1| TBP-like 1 [Danio rerio]
Length = 186
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V C L+L I Y P + ++MK+ PR T + SGK++ GA
Sbjct: 15 NVVSVFRTRCHLNLRTIGLEGTNVIYKP-EVGKVLMKLRKPRITASIWSSGKIICTGATS 73
Query: 189 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 248
E + KL +R+ A+ L+++G +++ FK+ N++ C + F ++L + +SYEPE
Sbjct: 74 EEEAKLGARRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEPE 133
Query: 249 LFPGLIYRMVKPRVVLLIFVNGRI 272
L P YR+ R + +F G I
Sbjct: 134 LHPAASYRIKNLRSTVQVFSTGNI 157
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V C L+L I Y P + ++MK+ PR T + SGK++ GA
Sbjct: 15 NVVSVFRTRCHLNLRTIGLEGTNVIYKP-EVGKVLMKLRKPRITASIWSSGKIICTGATS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E + KL +R+ A+ L+++G ++ F F+ N++ S+ + L + R + Y P
Sbjct: 74 EEEAKLGARRLARCLQKMGF-KVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEP 132
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+I N R+T F +G + + G
Sbjct: 133 ELHPAASYRIKNLRSTVQVFSTGNITVTG 161
>gi|448730264|ref|ZP_21712572.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|448735254|ref|ZP_21717470.1| transcription factor [Halococcus salifodinae DSM 8989]
gi|445793432|gb|EMA44004.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|445798592|gb|EMA48989.1| transcription factor [Halococcus salifodinae DSM 8989]
Length = 189
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++ GA
Sbjct: 12 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTGA 71
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K D + L+ L ++ + NIV + D++ + L+A+ + +
Sbjct: 72 KSTADVHESLEIVFDKLRDLEIRVEDDPEIVVQNIVTSADLQKTLNLNAIAIGLGLENIE 131
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ P VV L+F +G++
Sbjct: 132 YEPEQFPGLVYRLDDPEVVALLFGSGKL 159
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 11/178 (6%)
Query: 30 GQKNRRGTNL-NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 88
Q + N+ N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+
Sbjct: 3 AQDPKETINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFR 62
Query: 89 SGKLLILGAKHEHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN 143
SGK++ GAK D + L+ L PEI+ +N+V + + L+LN
Sbjct: 63 SGKIVCTGAKSTADVHESLEIVFDKLRDLEIRVEDDPEIV---VQNIVTSADLQKTLNLN 119
Query: 144 QINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
I + EY P +F GL+ ++ +P L F SGKL+I G K D + A K
Sbjct: 120 AIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPADAEHAVDKI 177
>gi|409723670|ref|ZP_11270812.1| transcription factor [Halococcus hamelinensis 100A6]
gi|448721517|ref|ZP_21704062.1| transcription factor [Halococcus hamelinensis 100A6]
gi|445791336|gb|EMA41977.1| transcription factor [Halococcus hamelinensis 100A6]
Length = 192
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
P I +N+V + ++G +DL + + + +++P +F GLI +I P T L F+S
Sbjct: 8 EPYIEALEIQNVVASSAIGQEIDLEALVTDLEGVDFDPEQFPGLIYRIEEPHATALIFRS 67
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH- 236
GKL+ GA A + L LG + + NIV + D+ + L+A+
Sbjct: 68 GKLVCTGADSVDGVHEALASTFETLSNLGLRVNDNPTITVQNIVVSGDLGATLNLNAIAI 127
Query: 237 HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 271
+ + YEPE FPGL+YR+ +P+VV L+F +G+
Sbjct: 128 GLGLEAIEYEPEQFPGLVYRLEEPKVVALLFGSGK 162
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 10/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++G +DL + + + +++P +F GLI +I P T L F+SGKL+ GA
Sbjct: 18 NVVASSAIGQEIDLEALVTDLEGVDFDPEQFPGLIYRIEEPHATALIFRSGKLVCTGADS 77
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
A + L LG +P I +N+V + +G L+LN I +
Sbjct: 78 VDGVHEALASTFETLSNLGLRVNDNPTIT---VQNIVVSGDLGATLNLNAIAIGLGLEAI 134
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 206
EY P +F GL+ ++ P+ L F SGK +I G K D + A+ L L
Sbjct: 135 EYEPEQFPGLVYRLEEPKVVALLFGSGKTVITGCKQFEDAEEATEVLVDRLSDL 188
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 213 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +I N+V + + + L+AL + ++PE FPGLIYR+ +P LIF +G++
Sbjct: 12 EALEIQNVVASSAIGQEIDLEALV-TDLEGVDFDPEQFPGLIYRIEEPHATALIFRSGKL 70
>gi|348506447|ref|XP_003440770.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Oreochromis niloticus]
Length = 187
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Query: 118 GHPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQ 177
+ E + N+V T C L+L I Y P + ++MK+ P T +
Sbjct: 4 SNDEALDIIITNVVATFRTRCHLNLRTIALEGTNVIYKP-EVGKVLMKLRKPMITASIWS 62
Query: 178 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 237
SGK++ GA E + KL +R+ A+ L++LG +++ FK+ N++ C + F V L
Sbjct: 63 SGKIICTGATSEDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFAVHLIDFTK 122
Query: 238 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +SYEPEL P YR+ + + +F G +
Sbjct: 123 NNRPIASYEPELHPAATYRIKNLKATIQVFSTGSL 157
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T C L+L I Y P + ++MK+ P T + SGK++ GA
Sbjct: 15 NVVATFRTRCHLNLRTIALEGTNVIYKP-EVGKVLMKLRKPMITASIWSSGKIICTGATS 73
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSEYNP 156
E + KL +R+ A+ L++LG ++ F F+ N++ S+ + L R + Y P
Sbjct: 74 EDEAKLGARRLARCLQKLGF-KVRFSAFKVVNVLAVCSMPFAVHLIDFTKNNRPIASYEP 132
Query: 157 GKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+I N + T F +G L + G
Sbjct: 133 ELHPAATYRIKNLKATIQVFSTGSLTVTG 161
>gi|355748887|gb|EHH53370.1| hypothetical protein EGM_14000, partial [Macaca fascicularis]
Length = 186
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKTNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKTNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|223476888|ref|YP_002581345.1| TATA-box binding protein [Thermococcus sp. AM4]
gi|214032114|gb|EEB72945.1| TATA-box binding protein [Thermococcus sp. AM4]
Length = 182
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 9/174 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V +I + +D+ ++ S + Y+P F G I K+ + T L F SGKL+ GAK
Sbjct: 7 NVVASIDLHGKIDVERVASELDPVHYDPSVFPGAIYKMGSFGVTFLIFYSGKLVCTGAKS 66
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGC-PLDLNQINSRVRYSE 153
K A+ + + L+ +G PEI +N+V G LDL+ + + E
Sbjct: 67 VETIKRATEELKQTLESMGMKFRGKPEI---RVQNIVAAGDAGFRTLDLDTVALTLPNVE 123
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
Y P F G++ ++ N R T L F SGK+++ GAK E D + A + K+ G
Sbjct: 124 YEPEIFPGVVYRVKNSRITILIFNSGKIVVSGAKTEEDIQRAVNELISEFKKYG 177
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 7/149 (4%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V +I + +D+ ++ S + Y+P F G I K+ + T L F SGKL+ GAK
Sbjct: 6 ENVVASIDLHGKIDVERVASELDPVHYDPSVFPGAIYKMGSFGVTFLIFYSGKLVCTGAK 65
Query: 188 HEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRF-PVKLDALHHVHSQFS 243
K A+ + + L+ +G +K++G ++ NIV D F + LD +
Sbjct: 66 SVETIKRATEELKQTLESMG--MKFRGKPEIRVQNIVAAGDAGFRTLDLDTVALTLPNVE 123
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE+FPG++YR+ R+ +LIF +G+I
Sbjct: 124 -YEPEIFPGVVYRVKNSRITILIFNSGKI 151
>gi|339237017|ref|XP_003380063.1| TATA-box-binding protein [Trichinella spiralis]
gi|316977178|gb|EFV60321.1| TATA-box-binding protein [Trichinella spiralis]
Length = 315
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGKL 181
I RN+V +V C LDL+ I Y ++ G LI +I PR + SGK+
Sbjct: 104 IDLRIRNVVTMFNVCCHLDLHHIAMHTCNVIYE--RYRGVLIFQIKKPRCYVKMWSSGKI 161
Query: 182 LILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240
+ GA+ E + + +SR A+I++++ P +++ +++ NI+ TC + F +++ L +
Sbjct: 162 TVSGAQSEEEARKSSRSVARIVQKIVGPRVRFADYRVTNIMATCKLPFGIRIPNLATEYP 221
Query: 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ SSYEPEL GL++R P+ L I G I
Sbjct: 222 RESSYEPELSIGLVWRSASPKATLRIHSTGSI 253
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGKLLILGAK 98
N+V +V C LDL+ I Y ++ G LI +I PR + SGK+ + GA+
Sbjct: 110 NVVTMFNVCCHLDLHHIAMHTCNVIYE--RYRGVLIFQIKKPRCYVKMWSSGKITVSGAQ 167
Query: 99 HEHDCKLASRKFAKILKQLGHPEIIFFFFRNMVGTISVGCPLDL-----NQINSRVRYSE 153
E + + +SR A+I++++ P + F +R V I C L N R S
Sbjct: 168 SEEEARKSSRSVARIVQKIVGPRVRFADYR--VTNIMATCKLPFGIRIPNLATEYPRESS 225
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 191
Y P GL+ + +P+ T +G + I GA+ + D
Sbjct: 226 YEPELSIGLVWRSASPKATLRIHSTGSITITGAESQAD 263
>gi|119719211|ref|YP_919706.1| TATA-box binding [Thermofilum pendens Hrk 5]
gi|119524331|gb|ABL77703.1| TATA binding protein of transcription factor TFIID [Thermofilum
pendens Hrk 5]
Length = 142
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 163 IMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIV 221
++++ P+T L F SGK++ GAK E + + A + K+LK G IK + ++ NIV
Sbjct: 1 MLRLTRPKTATLIFSSGKMVCTGAKSEAEVQKAVKSIIKLLKAHGIDIKNEPVIEVQNIV 60
Query: 222 CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ +++ V L+ + S YEPE FPGLIYRM P+VVLLIF +G++
Sbjct: 61 ASANLKASVDLERAAFLLEN-SMYEPEQFPGLIYRMQDPKVVLLIFSSGKV 110
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 74 IMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-----HPEIIFFFFR 128
++++ P+T L F SGK++ GAK E + + A + K+LK G P I +
Sbjct: 1 MLRLTRPKTATLIFSSGKMVCTGAKSEAEVQKAVKSIIKLLKAHGIDIKNEPVI---EVQ 57
Query: 129 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 188
N+V + ++ +DL + + S Y P +F GLI ++ +P+ L F SGK++ GAK
Sbjct: 58 NIVASANLKASVDLERAAFLLENSMYEPEQFPGLIYRMQDPKVVLLIFSSGKVVCTGAKK 117
Query: 189 EHDCKLASRKFAKILKQLG 207
E + K A K ILK+ G
Sbjct: 118 EEEVKRAVEKIYNILKEQG 136
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ +DL + + S Y P +F GLI ++ +P+ L F SGK++ GAK
Sbjct: 58 NIVASANLKASVDLERAAFLLENSMYEPEQFPGLIYRMQDPKVVLLIFSSGKVVCTGAKK 117
Query: 100 EHDCKLASRKFAKILKQLG 118
E + K A K ILK+ G
Sbjct: 118 EEEVKRAVEKIYNILKEQG 136
>gi|448316221|ref|ZP_21505845.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445609220|gb|ELY63027.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + +G L L + + ++Y+P +F GL+ + +P+ L F+SGK++ GAK
Sbjct: 12 NVVASSGIGQELALESLAMDLPGADYDPEQFPGLVYRTTDPKAAALIFRSGKIVCTGAKS 71
Query: 100 EHDCKLASRKFAKILKQL-----GHPEIIFFFFRNMVGTISVGCPLDLN--QINSRVRYS 152
+ + R + L+ L PEI+ +N+V + +G L+LN I +
Sbjct: 72 IEGVQESMRIVFEKLRDLQIEVEADPEIV---VQNIVSSADLGRSLNLNAIAIGLGLESI 128
Query: 153 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
EY P +F GL+ ++ P L F SGKL++ G K D + A + L+ LG
Sbjct: 129 EYEPEQFPGLVYRLDEPDVVTLLFGSGKLVVTGGKDVDDARHAIDVIVERLEDLG 183
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + +G L L + + ++Y+P +F GL+ + +P+ L F+SGK++ GA
Sbjct: 10 IENVVASSGIGQELALESLAMDLPGADYDPEQFPGLVYRTTDPKAAALIFRSGKIVCTGA 69
Query: 187 KHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSS 244
K + + R + L+ L ++ + NIV + D+ + L+A+ + +
Sbjct: 70 KSIEGVQESMRIVFEKLRDLQIEVEADPEIVVQNIVSSADLGRSLNLNAIAIGLGLESIE 129
Query: 245 YEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P VV L+F +G++
Sbjct: 130 YEPEQFPGLVYRLDEPDVVTLLFGSGKL 157
>gi|424811982|ref|ZP_18237222.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756204|gb|EGQ39787.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalinarum sp. J07AB56]
Length = 187
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ + L++I + +EY P +F GL+ ++ P+ L F SGK++ G +
Sbjct: 16 NVVASTTLDRRMPLDRIAIYLENTEYEPEQFPGLVYRLDEPKAAALLFGSGKVVCTGTQS 75
Query: 100 EHDCKLASRKFAKILKQLG-----HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEY 154
K A K L++ P+I +NMV + + L+LN+I + +EY
Sbjct: 76 PTQAKEAVHKIIDELREADIEIGKKPDITV---QNMVASSELDATLNLNRIAFELVGTEY 132
Query: 155 NPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 207
P +F GL+ ++ P+ L F SG+++ G K D + K + LK+LG
Sbjct: 133 EPEQFPGLVYRLDEPKVVFLLFSSGRIVCTGGKTYDDVENGIEKLKENLKELG 185
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 127 FRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
N+V + ++ + L++I + +EY P +F GL+ ++ P+ L F SGK++ G
Sbjct: 14 IENVVASTTLDRRMPLDRIAIYLENTEYEPEQFPGLVYRLDEPKAAALLFGSGKVVCTGT 73
Query: 187 KHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLD--ALHHVHSQFS 243
+ K A K L++ I K + N+V + ++ + L+ A V ++
Sbjct: 74 QSPTQAKEAVHKIIDELREADIEIGKKPDITVQNMVASSELDATLNLNRIAFELVGTE-- 131
Query: 244 SYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
YEPE FPGL+YR+ +P+VV L+F +GRI
Sbjct: 132 -YEPEQFPGLVYRLDEPKVVFLLFSSGRI 159
>gi|12653225|gb|AAH00381.1| TBP-like 1 [Homo sapiens]
gi|167774053|gb|ABZ92461.1| TBP-like 1 [synthetic construct]
Length = 186
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DAGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DAGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|340503459|gb|EGR30047.1| tata-box binding protein, putative [Ichthyophthirius multifiliis]
Length = 184
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 140 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199
DL I + + ++YNP +F + M+I P+ T L + SG + I+G K + + A+ K
Sbjct: 10 FDLTTIGQKCKNTQYNPRRFPAVFMRIKEPKATGLIYASGNMTIVGTKSIEESQRAAEKM 69
Query: 200 AKILKQLGH------PIKYQGFKIHNIVCTCDVRFPVKLDALH--HVHSQFSSYEPELFP 251
K +K+ + + ++ NIV +C + + + L++L+ + H++F++YE + FP
Sbjct: 70 LKDIKRALEIKEGECEFQEKKIQVRNIVASCKLGYKINLNSLNEDNEHNKFATYE-DTFP 128
Query: 252 GLIYRMVKPRVVLLIFVNGRI 272
GLIY+ +V LIF +G++
Sbjct: 129 GLIYKKFNSNIVALIFASGKM 149
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 51 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 110
DL I + + ++YNP +F + M+I P+ T L + SG + I+G K + + A+ K
Sbjct: 10 FDLTTIGQKCKNTQYNPRRFPAVFMRIKEPKATGLIYASGNMTIVGTKSIEESQRAAEKM 69
Query: 111 AKILK---QLGHPEIIF----FFFRNMVGTISVGCPLDLNQINSRVRYSEYN--PGKFHG 161
K +K ++ E F RN+V + +G ++LN +N ++++ F G
Sbjct: 70 LKDIKRALEIKEGECEFQEKKIQVRNIVASCKLGYKINLNSLNEDNEHNKFATYEDTFPG 129
Query: 162 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHN 219
LI K N L F SGK++ GAK E D K A +Q+G +Q F+ N
Sbjct: 130 LIYKKFNSNIVALIFASGKMVFTGAKSEQDIKNA-------FEQMGQA--FQKFEKKN 178
>gi|348565514|ref|XP_003468548.1| PREDICTED: TATA box-binding protein-like protein 1-like [Cavia
porcellus]
Length = 165
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|260797205|ref|XP_002593594.1| hypothetical protein BRAFLDRAFT_284100 [Branchiostoma floridae]
gi|229278820|gb|EEN49605.1| hypothetical protein BRAFLDRAFT_284100 [Branchiostoma floridae]
Length = 205
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 64/111 (57%)
Query: 162 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 221
+ MK+ P T + SGK++ GA+ E D K +R+ A+ L+ +G + + FK+ N++
Sbjct: 70 VTMKLRRPYCTANIWSSGKIVCTGARSEDDAKKGARRCARTLQNMGFQVHFSEFKVVNVL 129
Query: 222 CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
C + F +K+ H + +SYEPEL PG+ Y++ P+ V+ IF G I
Sbjct: 130 GICAMPFTIKITLFSKHHKENASYEPELHPGVTYKIRDPKAVMKIFSTGSI 180
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 73 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NM 130
+ MK+ P T + SGK++ GA+ E D K +R+ A+ L+ +G ++ F F+ N+
Sbjct: 70 VTMKLRRPYCTANIWSSGKIVCTGARSEDDAKKGARRCARTLQNMGF-QVHFSEFKVVNV 128
Query: 131 VGTISVGCPLDLNQINSRVRY-SEYNPGKFHGLIMKILNPRTTCLAFQSGKL 181
+G ++ + + + + + Y P G+ KI +P+ F +G +
Sbjct: 129 LGICAMPFTIKITLFSKHHKENASYEPELHPGVTYKIRDPKAVMKIFSTGSI 180
>gi|327290497|ref|XP_003229959.1| PREDICTED: TATA box-binding protein-like protein 1-like [Anolis
carolinensis]
Length = 186
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKVICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKSNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKVICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKSNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|417396717|gb|JAA45392.1| Putative tata-box binding protein tbp component of tfiid and tfiiib
[Desmodus rotundus]
Length = 186
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARCLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|149722967|ref|XP_001504421.1| PREDICTED: TATA box-binding protein-like protein 1-like [Equus
caballus]
Length = 186
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 186
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTGT 162
>gi|197102368|ref|NP_001126267.1| TATA box-binding protein-like protein 1 [Pongo abelii]
gi|75054881|sp|Q5R7U8.1|TBPL1_PONAB RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|55730887|emb|CAH92162.1| hypothetical protein [Pongo abelii]
Length = 190
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|403282108|ref|XP_003932505.1| PREDICTED: TATA box-binding protein-like protein 1 [Saimiri
boliviensis boliviensis]
Length = 186
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|45382085|ref|NP_990086.1| TATA box-binding protein-like protein 1 [Gallus gallus]
gi|326915870|ref|XP_003204235.1| PREDICTED: TATA box-binding protein-like protein 1-like [Meleagris
gallopavo]
gi|25091426|sp|Q9YGV8.1|TBPL1_CHICK RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TBP-like factor
gi|4520318|dbj|BAA75886.1| TBP-like protein [Gallus gallus]
Length = 183
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKVICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKTLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKVICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARCLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKTLRATLQIFSTGSITVTG 161
>gi|354500033|ref|XP_003512107.1| PREDICTED: TATA box-binding protein-like protein 1-like [Cricetulus
griseus]
gi|344257078|gb|EGW13182.1| TATA box-binding protein-like protein 1 [Cricetulus griseus]
Length = 186
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|224048129|ref|XP_002191326.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Taeniopygia guttata]
gi|449497471|ref|XP_004174223.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Taeniopygia guttata]
Length = 183
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKVICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKVICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|426234833|ref|XP_004011396.1| PREDICTED: TATA box-binding protein-like protein 1 [Ovis aries]
Length = 186
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 7/147 (4%)
Query: 129 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 186 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 245
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 246 EPELFPGLIYRMVKPRVVLLIFVNGRI 272
EPEL P + YR+ R L IF G I
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSI 157
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 40 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 96
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 97 AKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NMVGTISVGCPLDLNQINSRVR-YSE 153
A E + K +R+ A+ L++LG ++IF F+ N++ ++ + L + R ++
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHAS 129
Query: 154 YNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
Y P + +I + R T F +G + + G
Sbjct: 130 YEPELHPAVCYRIKSLRATLQIFSTGSITVTG 161
>gi|355723500|gb|AES07911.1| TATA box binding protein-like protein 1 [Mustela putorius furo]
Length = 185
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%)
Query: 162 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 221
++MK+ PR T + SGK++ GA E + K +R+ A+ L++LG + + FK+ N++
Sbjct: 50 VLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVL 109
Query: 222 CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
C++ F ++L + +SYEPEL P + YR+ R L IF G I
Sbjct: 110 AVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSI 160
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 73 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPEIIFFFFR--NM 130
++MK+ PR T + SGK++ GA E + K +R+ A+ L++LG ++IF F+ N+
Sbjct: 50 VLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGF-QVIFTDFKVVNV 108
Query: 131 VGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 185
+ ++ + L + R ++ Y P + +I + R T F +G + + G
Sbjct: 109 LAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG 164
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.144 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,290,257,574
Number of Sequences: 23463169
Number of extensions: 172474727
Number of successful extensions: 381215
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 375254
Number of HSP's gapped (non-prelim): 2725
length of query: 272
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 132
effective length of database: 9,074,351,707
effective search space: 1197814425324
effective search space used: 1197814425324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 75 (33.5 bits)