Query psy16701
Match_columns 272
No_of_seqs 207 out of 593
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:49:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z8u_A Tata-box-binding protei 100.0 2.1E-62 7.2E-67 428.4 23.3 176 33-208 10-187 (188)
2 1rm1_A Tata-box binding protei 100.0 8.9E-63 3E-67 444.3 19.5 187 82-272 25-212 (240)
3 1ais_A TBP, protein (tata-bind 100.0 1.7E-61 5.9E-66 420.8 22.4 174 33-206 6-181 (182)
4 1mp9_A Tata-binding protein; t 100.0 2.2E-61 7.6E-66 425.0 23.2 177 33-209 10-188 (198)
5 1ytb_A Protein (tata binding p 100.0 2.7E-60 9.2E-65 412.6 23.3 173 35-207 4-178 (180)
6 3eik_A Tata-box-binding protei 100.0 5.6E-59 1.9E-63 413.8 24.2 172 35-206 42-215 (218)
7 1rm1_A Tata-box binding protei 100.0 6.3E-58 2.2E-62 412.8 24.5 173 35-207 64-238 (240)
8 1ytb_A Protein (tata binding p 100.0 1.1E-58 3.8E-63 402.4 18.1 150 123-272 3-152 (180)
9 3eik_A Tata-box-binding protei 100.0 2E-56 7E-61 397.4 19.4 151 122-272 40-190 (218)
10 2z8u_A Tata-box-binding protei 100.0 9.8E-55 3.4E-59 379.9 18.6 152 120-272 8-160 (188)
11 1ais_A TBP, protein (tata-bind 100.0 1.8E-54 6.1E-59 376.7 19.1 150 122-272 6-156 (182)
12 1mp9_A Tata-binding protein; t 100.0 3.2E-54 1.1E-58 379.4 20.1 152 120-272 8-160 (198)
13 2d0b_A RNAse HIII, ribonucleas 91.6 0.19 6.6E-06 46.3 5.1 34 157-190 27-60 (310)
14 3vn5_A RNAse HIII, ribonucleas 90.9 0.061 2.1E-06 48.6 0.9 37 156-192 25-61 (257)
15 2d0b_A RNAse HIII, ribonucleas 88.7 0.5 1.7E-05 43.5 5.3 49 54-103 14-62 (310)
16 3vn5_A RNAse HIII, ribonucleas 87.9 0.14 4.7E-06 46.2 0.9 38 67-104 25-62 (257)
17 1t00_A Thioredoxin, TRX; redox 53.4 16 0.00054 26.2 4.2 29 172-200 80-110 (112)
18 1dby_A Chloroplast thioredoxin 53.0 14 0.00049 26.1 3.9 28 172-199 76-105 (107)
19 2trx_A Thioredoxin; electron t 52.4 21 0.00072 25.2 4.8 29 172-200 77-107 (108)
20 3gnj_A Thioredoxin domain prot 52.4 22 0.00077 25.1 4.9 29 172-200 79-109 (111)
21 3tco_A Thioredoxin (TRXA-1); d 51.6 16 0.00055 25.7 4.0 29 172-200 78-108 (109)
22 1fb6_A Thioredoxin M; electron 51.4 16 0.00055 25.6 3.9 28 172-199 75-104 (105)
23 2jvf_A De novo protein M7; tet 50.6 30 0.001 25.5 5.2 24 97-120 56-79 (96)
24 2o8v_B Thioredoxin 1; disulfid 49.7 22 0.00077 26.8 4.8 29 172-200 97-127 (128)
25 1thx_A Thioredoxin, thioredoxi 49.0 25 0.00086 25.0 4.8 29 172-200 82-112 (115)
26 3krm_A Insulin-like growth fac 48.9 97 0.0033 24.4 10.7 25 180-206 133-157 (163)
27 2i4a_A Thioredoxin; acidophIle 46.7 22 0.00076 24.9 4.1 27 172-198 77-105 (107)
28 1w4v_A Thioredoxin, mitochondr 46.6 28 0.00095 25.5 4.8 29 172-200 88-118 (119)
29 4hhu_A OR280; engineered prote 46.4 14 0.00047 29.9 3.0 109 141-266 12-128 (170)
30 3gix_A Thioredoxin-like protei 45.6 34 0.0012 26.7 5.4 35 172-206 80-126 (149)
31 2e0q_A Thioredoxin; electron t 45.6 28 0.00095 24.0 4.4 29 172-200 72-102 (104)
32 1ep7_A Thioredoxin CH1, H-type 45.2 30 0.001 24.5 4.6 28 172-200 81-110 (112)
33 2es7_A Q8ZP25_salty, putative 45.0 22 0.00076 27.9 4.2 29 172-200 94-124 (142)
34 2opv_A KHSRP protein; KH domai 44.0 28 0.00096 25.1 4.3 33 170-204 44-84 (85)
35 2yzu_A Thioredoxin; redox prot 42.7 18 0.0006 25.4 2.9 28 172-199 75-104 (109)
36 1v98_A Thioredoxin; oxidoreduc 42.4 34 0.0012 25.8 4.8 29 172-200 107-137 (140)
37 1kng_A Thiol:disulfide interch 42.4 27 0.00093 26.3 4.2 33 171-203 120-154 (156)
38 3m9j_A Thioredoxin; oxidoreduc 42.3 26 0.0009 24.5 3.9 27 172-199 76-104 (105)
39 3hz4_A Thioredoxin; NYSGXRC, P 41.9 37 0.0013 25.8 4.9 34 172-205 81-116 (140)
40 4euy_A Uncharacterized protein 40.6 19 0.00067 25.6 2.9 28 172-199 74-103 (105)
41 3qfa_C Thioredoxin; protein-pr 40.4 27 0.00093 25.6 3.8 27 172-199 87-115 (116)
42 2ctf_A Vigilin; K homology typ 40.1 40 0.0014 25.5 4.8 28 177-206 66-93 (102)
43 3zzx_A Thioredoxin; oxidoreduc 39.9 34 0.0012 25.2 4.3 26 172-198 76-103 (105)
44 3p2a_A Thioredoxin 2, putative 39.8 34 0.0012 26.0 4.4 30 172-201 112-143 (148)
45 2av4_A Thioredoxin-like protei 39.8 37 0.0013 28.2 4.8 36 170-205 96-143 (160)
46 1syr_A Thioredoxin; SGPP, stru 38.8 20 0.0007 25.9 2.8 27 172-199 82-110 (112)
47 3d22_A TRXH4, thioredoxin H-ty 38.4 44 0.0015 24.9 4.8 29 172-201 102-132 (139)
48 2ppt_A Thioredoxin-2; thiredox 38.2 41 0.0014 26.3 4.8 29 172-200 121-151 (155)
49 2qgv_A Hydrogenase-1 operon pr 38.1 41 0.0014 27.1 4.8 30 171-200 93-124 (140)
50 1r26_A Thioredoxin; redox-acti 38.1 46 0.0016 25.0 4.9 28 172-200 93-122 (125)
51 2voc_A Thioredoxin; electron t 37.5 34 0.0012 24.7 3.9 25 172-196 74-100 (112)
52 2j23_A Thioredoxin; immune pro 37.2 37 0.0013 25.0 4.1 27 172-199 91-119 (121)
53 1nsw_A Thioredoxin, TRX; therm 35.5 19 0.00066 25.3 2.2 27 172-198 74-102 (105)
54 2b1k_A Thiol:disulfide interch 35.5 45 0.0015 25.6 4.6 35 171-205 128-164 (168)
55 3emx_A Thioredoxin; structural 34.7 41 0.0014 25.4 4.1 29 172-200 95-125 (135)
56 1dby_A Chloroplast thioredoxin 34.3 53 0.0018 22.9 4.5 28 83-110 76-105 (107)
57 2vlu_A Thioredoxin, thioredoxi 33.2 57 0.002 23.5 4.6 28 172-200 90-119 (122)
58 1oaz_A Thioredoxin 1; immune s 32.8 23 0.0008 26.5 2.3 27 172-198 92-120 (123)
59 3tco_A Thioredoxin (TRXA-1); d 32.6 40 0.0014 23.5 3.5 28 83-110 78-107 (109)
60 1t00_A Thioredoxin, TRX; redox 32.2 45 0.0015 23.7 3.8 28 83-110 80-109 (112)
61 2kuc_A Putative disulphide-iso 32.1 63 0.0022 23.6 4.7 28 172-199 89-119 (130)
62 3gnj_A Thioredoxin domain prot 32.1 60 0.002 22.8 4.4 29 82-110 78-108 (111)
63 3nec_A Profilin, inflammatory 31.7 80 0.0027 26.1 5.7 45 75-119 115-166 (166)
64 1evh_A WH1 domain, protein (ME 31.6 26 0.00088 27.2 2.4 55 151-207 57-112 (112)
65 2pu9_C TRX-F, thioredoxin F-ty 31.5 63 0.0022 22.9 4.5 27 172-199 81-109 (111)
66 1fb6_A Thioredoxin M; electron 31.1 60 0.002 22.4 4.2 28 83-110 75-104 (105)
67 2a4v_A Peroxiredoxin DOT5; yea 31.1 72 0.0025 24.4 5.1 35 171-206 120-156 (159)
68 1faa_A Thioredoxin F; electron 31.0 61 0.0021 23.5 4.4 27 172-199 94-122 (124)
69 2opv_A KHSRP protein; KH domai 30.9 72 0.0025 22.8 4.7 33 81-115 44-84 (85)
70 2trx_A Thioredoxin; electron t 30.9 60 0.0021 22.7 4.3 28 83-110 77-106 (108)
71 2oe3_A Thioredoxin-3; electron 30.8 37 0.0013 24.9 3.1 25 172-197 86-112 (114)
72 2i1u_A Thioredoxin, TRX, MPT46 30.2 11 0.00037 27.4 0.0 27 172-198 87-115 (121)
73 3d6i_A Monothiol glutaredoxin- 29.7 80 0.0027 22.3 4.8 29 172-201 79-109 (112)
74 2ctf_A Vigilin; K homology typ 29.7 62 0.0021 24.4 4.3 38 70-117 56-93 (102)
75 2vim_A Thioredoxin, TRX; thior 29.5 58 0.002 22.4 3.9 27 172-199 75-103 (104)
76 2o8v_B Thioredoxin 1; disulfid 29.4 61 0.0021 24.2 4.3 28 83-110 97-126 (128)
77 2xc2_A Thioredoxinn; oxidoredu 29.1 57 0.0019 23.5 3.9 27 172-199 88-116 (117)
78 1thx_A Thioredoxin, thioredoxi 28.9 68 0.0023 22.5 4.3 28 83-110 82-111 (115)
79 2es7_A Q8ZP25_salty, putative 28.8 55 0.0019 25.6 4.0 29 82-110 93-123 (142)
80 1xfl_A Thioredoxin H1; AT3G510 28.4 71 0.0024 23.6 4.5 27 172-199 94-122 (124)
81 1kng_A Thiol:disulfide interch 28.3 67 0.0023 24.0 4.4 33 82-114 120-154 (156)
82 2l57_A Uncharacterized protein 28.0 75 0.0026 23.1 4.5 27 172-198 85-114 (126)
83 2jvf_A De novo protein M7; tet 28.0 62 0.0021 23.8 3.8 24 186-209 56-79 (96)
84 1whq_A RNA helicase A; double- 27.9 75 0.0026 23.9 4.5 42 78-119 34-78 (99)
85 1acf_A Profilin I; protein bin 27.6 1.3E+02 0.0044 23.3 6.0 44 76-119 78-125 (125)
86 1x4m_A FAR upstream element bi 27.4 50 0.0017 24.3 3.3 35 171-207 46-88 (94)
87 2b7t_A Double-stranded RNA-spe 27.2 1.5E+02 0.0053 20.4 5.8 38 79-117 33-72 (73)
88 1ti3_A Thioredoxin H, PTTRXH1; 26.8 83 0.0029 22.0 4.4 29 172-201 82-112 (113)
89 1x5d_A Protein disulfide-isome 26.6 83 0.0028 22.9 4.5 30 172-201 86-117 (133)
90 2qsi_A Putative hydrogenase ex 26.4 97 0.0033 24.7 5.1 32 171-202 91-124 (137)
91 2in3_A Hypothetical protein; D 26.4 71 0.0024 25.8 4.4 30 172-201 179-210 (216)
92 2ctm_A Vigilin; K homology typ 26.3 82 0.0028 23.3 4.4 35 170-206 47-86 (95)
93 2o5a_A BH1328 protein; BHR21, 26.2 82 0.0028 24.9 4.6 29 181-210 38-66 (125)
94 3nul_A Profilin I; cytoskeleto 26.2 1.4E+02 0.0048 23.3 6.0 40 80-119 87-130 (130)
95 3uvt_A Thioredoxin domain-cont 26.2 73 0.0025 22.2 4.0 27 172-198 81-109 (111)
96 1w4v_A Thioredoxin, mitochondr 25.9 80 0.0027 22.9 4.3 28 83-110 88-117 (119)
97 3adj_A F21M12.9 protein; HYL1, 25.8 96 0.0033 21.7 4.5 37 79-115 35-73 (76)
98 2axy_A Poly(RC)-binding protei 25.7 1.1E+02 0.0038 21.2 4.8 33 171-205 36-72 (73)
99 3die_A Thioredoxin, TRX; elect 25.6 50 0.0017 22.9 2.9 27 172-198 76-104 (106)
100 3adg_A F21M12.9 protein; HYL1, 25.4 1.1E+02 0.0037 21.2 4.7 37 79-115 33-72 (73)
101 2ggt_A SCO1 protein homolog, m 25.3 99 0.0034 23.3 4.9 32 170-201 128-161 (164)
102 1zzo_A RV1677; thioredoxin fol 25.2 73 0.0025 22.8 3.9 29 172-200 104-134 (136)
103 2id1_A Hypothetical protein; a 25.1 90 0.0031 24.9 4.6 28 181-209 38-65 (130)
104 1zma_A Bacterocin transport ac 25.1 37 0.0012 24.7 2.2 25 172-196 90-116 (118)
105 3h93_A Thiol:disulfide interch 24.9 78 0.0027 25.2 4.4 28 178-205 159-188 (192)
106 2l6c_A Thioredoxin; oxidoreduc 24.7 73 0.0025 22.8 3.8 27 172-198 75-103 (110)
107 2cte_A Vigilin; K homology typ 24.6 84 0.0029 23.0 4.1 27 178-206 59-85 (94)
108 2fwh_A Thiol:disulfide interch 24.0 34 0.0012 25.7 1.9 29 172-200 94-127 (134)
109 2nmm_A 14 kDa phosphohistidine 23.7 1.1E+02 0.0037 24.7 4.9 62 149-210 19-81 (135)
110 1lu4_A Soluble secreted antige 23.6 66 0.0023 23.2 3.4 29 172-200 102-135 (136)
111 2nmm_A 14 kDa phosphohistidine 23.6 1.7E+02 0.006 23.5 6.1 62 59-120 18-80 (135)
112 1di2_A XLRBPA, double stranded 23.6 1.4E+02 0.0047 20.3 4.9 36 79-115 31-68 (69)
113 2vm1_A Thioredoxin, thioredoxi 23.6 1.1E+02 0.0039 21.5 4.7 28 172-200 84-113 (118)
114 3hz4_A Thioredoxin; NYSGXRC, P 23.5 96 0.0033 23.3 4.4 31 83-113 81-113 (140)
115 3gix_A Thioredoxin-like protei 23.4 1.1E+02 0.0038 23.6 4.9 33 83-115 80-124 (149)
116 3qfa_C Thioredoxin; protein-pr 23.3 98 0.0034 22.4 4.3 27 83-110 87-115 (116)
117 1v98_A Thioredoxin; oxidoreduc 23.3 92 0.0031 23.2 4.3 28 83-110 107-136 (140)
118 1ypr_A Profilin; actin-binding 23.2 1.7E+02 0.006 22.6 6.0 44 76-119 78-125 (125)
119 2qgv_A Hydrogenase-1 operon pr 23.2 88 0.003 25.1 4.3 29 82-110 93-123 (140)
120 1gh2_A Thioredoxin-like protei 23.2 85 0.0029 22.0 3.9 26 172-198 77-104 (107)
121 1xwb_A Thioredoxin; dimerizati 22.9 73 0.0025 22.0 3.4 26 172-198 77-104 (106)
122 2hw4_A 14 kDa phosphohistidine 22.9 1E+02 0.0034 25.3 4.5 62 149-210 28-90 (144)
123 2hw4_A 14 kDa phosphohistidine 22.5 1.6E+02 0.0053 24.1 5.6 63 58-120 26-89 (144)
124 2rem_A Disulfide oxidoreductas 22.3 93 0.0032 24.6 4.3 28 176-204 160-187 (193)
125 2znm_A Thiol:disulfide interch 22.1 77 0.0026 25.2 3.8 30 176-205 155-184 (195)
126 3p2a_A Thioredoxin 2, putative 21.8 86 0.003 23.6 3.9 28 83-110 112-141 (148)
127 2a4v_A Peroxiredoxin DOT5; yea 21.7 1.1E+02 0.0038 23.3 4.6 35 82-117 120-156 (159)
128 2rli_A SCO2 protein homolog, m 21.7 99 0.0034 23.5 4.3 32 171-202 132-165 (171)
129 2b1k_A Thiol:disulfide interch 21.6 1E+02 0.0035 23.5 4.3 34 82-115 128-163 (168)
130 3adl_A RISC-loading complex su 21.6 1.6E+02 0.0055 21.4 5.2 38 79-117 46-85 (88)
131 1xhk_A Putative protease LA ho 21.6 95 0.0033 25.7 4.3 31 171-205 26-61 (187)
132 1nho_A Probable thioredoxin; b 21.5 99 0.0034 20.4 3.8 22 178-199 62-83 (85)
133 2pbd_P Profilin-1, profilin I; 21.4 1.5E+02 0.005 23.6 5.2 36 84-119 100-139 (139)
134 2o5a_A BH1328 protein; BHR21, 21.2 1.1E+02 0.0039 24.1 4.5 29 91-120 37-65 (125)
135 1x4m_A FAR upstream element bi 21.0 1.1E+02 0.0039 22.3 4.2 25 92-118 64-88 (94)
136 1fo5_A Thioredoxin; disulfide 20.8 59 0.002 21.6 2.5 22 178-199 63-84 (85)
137 3f3q_A Thioredoxin-1; His TAG, 20.8 1E+02 0.0034 22.0 3.9 27 172-199 80-108 (109)
138 2l5l_A Thioredoxin; structural 20.6 93 0.0032 23.2 3.8 29 172-200 95-125 (136)
139 2ppt_A Thioredoxin-2; thiredox 20.5 1.1E+02 0.0037 23.8 4.3 29 82-110 120-150 (155)
140 2av4_A Thioredoxin-like protei 20.3 1.1E+02 0.0036 25.4 4.2 33 82-114 97-141 (160)
141 2qsi_A Putative hydrogenase ex 20.1 1.3E+02 0.0043 24.0 4.6 31 82-112 91-123 (137)
142 1zzk_A Heterogeneous nuclear r 20.1 1.6E+02 0.0056 20.7 4.9 26 179-206 52-77 (82)
143 1qc6_A EVH1 domain from ENA/VA 20.0 1.2E+02 0.0041 23.8 4.4 56 150-207 57-113 (130)
No 1
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=100.00 E-value=2.1e-62 Score=428.40 Aligned_cols=176 Identities=32% Similarity=0.511 Sum_probs=163.5
Q ss_pred CCcceEEEEEEEEEeCCccChhhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHH
Q psy16701 33 NRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 112 (272)
Q Consensus 33 ~~~~~i~NvV~s~~l~~~ldL~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~ 112 (272)
.+.++|+|||||++|+|+|||++|+..++|+||||++|||++||+++|+++++||+||||+||||+|+++++.|++++++
T Consensus 10 ~~~~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~ 89 (188)
T 2z8u_A 10 EPEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIK 89 (188)
T ss_dssp -CCCEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC--ceeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHH
Q psy16701 113 ILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 190 (272)
Q Consensus 113 ~L~~lg~~--~~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e 190 (272)
+|+++|++ ...+++|||||||++++++|||+.|+..+++++||||+||||+||+++|+++++||+|||||||||||++
T Consensus 90 ~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~ 169 (188)
T 2z8u_A 90 ELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEE 169 (188)
T ss_dssp HHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHSTTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHH
T ss_pred HHHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhCcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHH
Confidence 99999996 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCC
Q psy16701 191 DCKLASRKFAKILKQLGH 208 (272)
Q Consensus 191 ~~~~A~~ki~~iL~klg~ 208 (272)
+++.|+++++++|+++|+
T Consensus 170 ~~~~A~~~i~~~L~~~~~ 187 (188)
T 2z8u_A 170 DAKRALKKILDTIKEVQE 187 (188)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999874
No 2
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=8.9e-63 Score=444.35 Aligned_cols=187 Identities=47% Similarity=0.789 Sum_probs=148.6
Q ss_pred eEEEeecCCcEEEEecCChhHHHHHHHHHHHHHHhcCCC-ceeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcc
Q psy16701 82 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFH 160 (272)
Q Consensus 82 ~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~~L~~lg~~-~~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fp 160 (272)
.--+-|+|||++++|++|.++++.+ ++.+++++.+ ....++|||||||++++++|||++|+.+++|++||||+||
T Consensus 25 ~~~~~f~sGk~~~s~~~s~~~~~~~----~~~~~~~~~~~~~~~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fp 100 (240)
T 1rm1_A 25 VWENQNRDGTKPATTFQSEEDIKRA----APESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFA 100 (240)
T ss_dssp ----------------------------------------CCCCCEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCS
T ss_pred cccccCCCCcceecccccHHHHHHH----HHHHHhhccCcCCCceEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccc
Confidence 3446799999999999888887755 4556666665 3567899999999999999999999999999999999999
Q ss_pred eEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHHHHHHHhCCCCCCCcceEEEEEEEEeecCCccChHHHHhHcC
Q psy16701 161 GLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 240 (272)
Q Consensus 161 gli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki~~iL~klg~~~~~~~f~V~NIvas~d~~f~I~Le~la~~~~ 240 (272)
||+||+++|+++++||+|||||||||||+++++.|+++++++|+++|+++++.+|+|||||||||++|+||||.||..|+
T Consensus 101 gli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la~~~~ 180 (240)
T 1rm1_A 101 AVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180 (240)
T ss_dssp EEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTT
T ss_pred eEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHHHHhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccCceeEEEEcCCcEEEEEeecCcC
Q psy16701 241 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272 (272)
Q Consensus 241 ~~~~YEPE~fPGLvyR~~~pk~~~lIF~SGkv 272 (272)
++++|||||||||+|||.+|++|+|||+||||
T Consensus 181 ~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKI 212 (240)
T 1rm1_A 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKI 212 (240)
T ss_dssp TTEEEETTTEEEEEEEETTTTEEEEECTTSEE
T ss_pred hccEECCccCCceEEEeCCCcEEEEEecCCEE
Confidence 99999999999999999999999999999996
No 3
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=100.00 E-value=1.7e-61 Score=420.76 Aligned_cols=174 Identities=32% Similarity=0.485 Sum_probs=169.3
Q ss_pred CCcceEEEEEEEEEeCCccChhhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHH
Q psy16701 33 NRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 112 (272)
Q Consensus 33 ~~~~~i~NvV~s~~l~~~ldL~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~ 112 (272)
+.+++|+|||||++|+|+|||++|+..++|+||||++|||++||+++|+++++||+||||+||||+|+++++.|++++++
T Consensus 6 ~~~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~ 85 (182)
T 1ais_A 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQ 85 (182)
T ss_dssp TCEEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC--ceeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHH
Q psy16701 113 ILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 190 (272)
Q Consensus 113 ~L~~lg~~--~~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e 190 (272)
+|+++|++ ...+++|||||||++++++|||+.|+..+++++||||+||||+||+++|+++++||+||||+||||||++
T Consensus 86 ~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~ 165 (182)
T 1ais_A 86 KLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEA 165 (182)
T ss_dssp HHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHSTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHH
T ss_pred HHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhCCCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHH
Confidence 99999997 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q psy16701 191 DCKLASRKFAKILKQL 206 (272)
Q Consensus 191 ~~~~A~~ki~~iL~kl 206 (272)
+++.|+++++++|+++
T Consensus 166 ~~~~a~~~i~~~L~~~ 181 (182)
T 1ais_A 166 DAWEAVRKLLRELDKY 181 (182)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 4
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=2.2e-61 Score=424.96 Aligned_cols=177 Identities=31% Similarity=0.488 Sum_probs=172.1
Q ss_pred CCcceEEEEEEEEEeCCccChhhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHH
Q psy16701 33 NRRGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 112 (272)
Q Consensus 33 ~~~~~i~NvV~s~~l~~~ldL~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~ 112 (272)
...++|+|||||++++|+|||++|+..++|+||||++|||++||+++|+++++||+||||+||||+|+++++.|++++++
T Consensus 10 ~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~~ 89 (198)
T 1mp9_A 10 KAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIK 89 (198)
T ss_dssp CCEEEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC--ceeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHH
Q psy16701 113 ILKQLGHP--EIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 190 (272)
Q Consensus 113 ~L~~lg~~--~~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e 190 (272)
+|+++|++ ...+++|||||||++++++|||++|+..+++++||||+||||+||+++|+++++||+||||+||||||++
T Consensus 90 ~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~ 169 (198)
T 1mp9_A 90 TLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKRED 169 (198)
T ss_dssp HHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHH
T ss_pred HHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhhcCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCCHH
Confidence 99999997 3689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q psy16701 191 DCKLASRKFAKILKQLGHP 209 (272)
Q Consensus 191 ~~~~A~~ki~~iL~klg~~ 209 (272)
+++.|+++++++|+++|+.
T Consensus 170 ~~~~A~~~i~~~L~~~~~~ 188 (198)
T 1mp9_A 170 EVHKAVKKIFDKLVELDCV 188 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999875
No 5
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=100.00 E-value=2.7e-60 Score=412.56 Aligned_cols=173 Identities=38% Similarity=0.671 Sum_probs=168.2
Q ss_pred cceEEEEEEEEEeCCccChhhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHHHH
Q psy16701 35 RGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 114 (272)
Q Consensus 35 ~~~i~NvV~s~~l~~~ldL~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~~L 114 (272)
.|+|+|||||++++|+|||++|+..++|+||||++|||++||+++|+++++||+||||+||||||+++++.|+++++++|
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~L 83 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARII 83 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCC-ceeeeEEEEEEEEEEeCCCCChhhHhhcC-CCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHH
Q psy16701 115 KQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192 (272)
Q Consensus 115 ~~lg~~-~~~~~~I~NVVas~~l~~~ldL~~la~~~-~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~ 192 (272)
+++|++ ...+++|||||||+|++++|||+.++..+ ++++||||+||||+||+.+|+++++||+||||+|||||+++|+
T Consensus 84 ~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~ 163 (180)
T 1ytb_A 84 QKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 163 (180)
T ss_dssp HHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHH
T ss_pred HHcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHH
Confidence 999997 47899999999999999999999999764 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q psy16701 193 KLASRKFAKILKQLG 207 (272)
Q Consensus 193 ~~A~~ki~~iL~klg 207 (272)
++|+++++++|.+++
T Consensus 164 ~~a~~~i~p~L~~~~ 178 (180)
T 1ytb_A 164 YQAFEAIYPVLSEFR 178 (180)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999874
No 6
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=100.00 E-value=5.6e-59 Score=413.85 Aligned_cols=172 Identities=36% Similarity=0.611 Sum_probs=167.1
Q ss_pred cceEEEEEEEEEeCCccChhhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHHHH
Q psy16701 35 RGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 114 (272)
Q Consensus 35 ~~~i~NvV~s~~l~~~ldL~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~~L 114 (272)
.|+|+|||||++|+|+|||++||..++|+||+|++|||++||+++|+++++||+||||+||||||+++++.|+++++++|
T Consensus 42 ~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~~L 121 (218)
T 3eik_A 42 IPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKII 121 (218)
T ss_dssp SCEEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCC-ceeeeEEEEEEEEEEeCCCCChhhHhhcC-CCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHH
Q psy16701 115 KQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192 (272)
Q Consensus 115 ~~lg~~-~~~~~~I~NVVas~~l~~~ldL~~la~~~-~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~ 192 (272)
+++|++ ...+|+|||||||+|++++|||+.|+... ++++||||+||||+||+.+|+++++||+||||+|||||+++++
T Consensus 122 ~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~ 201 (218)
T 3eik_A 122 HKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDI 201 (218)
T ss_dssp HHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHH
T ss_pred HHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHH
Confidence 999997 46899999999999999999999999764 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q psy16701 193 KLASRKFAKILKQL 206 (272)
Q Consensus 193 ~~A~~ki~~iL~kl 206 (272)
+.|+++|+++|.++
T Consensus 202 ~~A~~~I~p~L~~f 215 (218)
T 3eik_A 202 YQAFNNIYPVLIQH 215 (218)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 7
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=6.3e-58 Score=412.77 Aligned_cols=173 Identities=38% Similarity=0.671 Sum_probs=168.1
Q ss_pred cceEEEEEEEEEeCCccChhhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHHHH
Q psy16701 35 RGTNLNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL 114 (272)
Q Consensus 35 ~~~i~NvV~s~~l~~~ldL~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~~L 114 (272)
+++|+|||||++++|+|||++|+..++|+||||++|||++||+++|+++++||+||||+||||||+++++.|+++++++|
T Consensus 64 ~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~L 143 (240)
T 1rm1_A 64 VPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARII 143 (240)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCC-ceeeeEEEEEEEEEEeCCCCChhhHhhcC-CCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHH
Q psy16701 115 KQLGHP-EIIFFFFRNMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192 (272)
Q Consensus 115 ~~lg~~-~~~~~~I~NVVas~~l~~~ldL~~la~~~-~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~ 192 (272)
+++|++ ...+++|||||||+|++++|||+.++..+ ++++||||+||||+||+.+|+++++||+||||+|||+|+++++
T Consensus 144 ~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la~~~~~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~~~~ 223 (240)
T 1rm1_A 144 QKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI 223 (240)
T ss_dssp HHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEEEETTTEEEEEEEETTTTEEEEECTTSEEEEEEESSHHHH
T ss_pred HHcCCCcccCcceEEEEEEEEeCCCccCHHHHHHhchhccEECCccCCceEEEeCCCcEEEEEecCCEEEEEecCCHHHH
Confidence 999997 47899999999999999999999999864 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q psy16701 193 KLASRKFAKILKQLG 207 (272)
Q Consensus 193 ~~A~~ki~~iL~klg 207 (272)
++|+++|+++|.++.
T Consensus 224 ~~Ai~~i~p~L~~~~ 238 (240)
T 1rm1_A 224 YQAFEAIYPVLSEFR 238 (240)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999874
No 8
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=100.00 E-value=1.1e-58 Score=402.44 Aligned_cols=150 Identities=55% Similarity=1.008 Sum_probs=147.2
Q ss_pred eeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHHHHH
Q psy16701 123 IFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKI 202 (272)
Q Consensus 123 ~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki~~i 202 (272)
..++|||||||++++++|||++||.+++|++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++
T Consensus 3 ~~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~ 82 (180)
T 1ytb_A 3 IVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARI 82 (180)
T ss_dssp CCCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCcceEEEEEEEEeecCCccChHHHHhHcCCCceeccccCceeEEEEcCCcEEEEEeecCcC
Q psy16701 203 LKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272 (272)
Q Consensus 203 L~klg~~~~~~~f~V~NIvas~d~~f~I~Le~la~~~~~~~~YEPE~fPGLvyR~~~pk~~~lIF~SGkv 272 (272)
|+++|+++++.+|+|||||||||++|+||||+||..|+++++|||||||||+|||.+|++|+|||+||||
T Consensus 83 L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGki 152 (180)
T 1ytb_A 83 IQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKI 152 (180)
T ss_dssp HHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEE
T ss_pred HHHcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996
No 9
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=100.00 E-value=2e-56 Score=397.38 Aligned_cols=151 Identities=50% Similarity=0.946 Sum_probs=148.0
Q ss_pred eeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHHHH
Q psy16701 122 IIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 122 ~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki~~ 201 (272)
...++|||||||++++|+|||++||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|++++++
T Consensus 40 ~i~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~ 119 (218)
T 3eik_A 40 GIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAK 119 (218)
T ss_dssp CCSCEEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCcceEEEEEEEEeecCCccChHHHHhHcCCCceeccccCceeEEEEcCCcEEEEEeecCcC
Q psy16701 202 ILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272 (272)
Q Consensus 202 iL~klg~~~~~~~f~V~NIvas~d~~f~I~Le~la~~~~~~~~YEPE~fPGLvyR~~~pk~~~lIF~SGkv 272 (272)
+|+++|+++++.+|+|||||||||++|+|||++||..|+++++|||||||||+|||.+|++|+|||+||||
T Consensus 120 ~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKi 190 (218)
T 3eik_A 120 IIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKI 190 (218)
T ss_dssp HHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEE
T ss_pred HHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 10
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=100.00 E-value=9.8e-55 Score=379.93 Aligned_cols=152 Identities=35% Similarity=0.598 Sum_probs=138.3
Q ss_pred CceeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHH
Q psy16701 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199 (272)
Q Consensus 120 ~~~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki 199 (272)
+..++++|+|||||++++++|||++|+..++|++|||++|||++||+++|+++++||+||||+||||||+++++.|++++
T Consensus 8 ~~~~~~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~ 87 (188)
T 2z8u_A 8 PMEPEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKI 87 (188)
T ss_dssp ---CCCEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-CCCcceEEEEEEEEeecCCccChHHHHhHcCCCceeccccCceeEEEEcCCcEEEEEeecCcC
Q psy16701 200 AKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272 (272)
Q Consensus 200 ~~iL~klg~~-~~~~~f~V~NIvas~d~~f~I~Le~la~~~~~~~~YEPE~fPGLvyR~~~pk~~~lIF~SGkv 272 (272)
+++|+++|++ .++++|+|||||||+|++|+|||+.||.. .++++||||+||||+||+.+|++++|||+||||
T Consensus 88 ~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~-~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKi 160 (188)
T 2z8u_A 88 IKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALM-VEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKV 160 (188)
T ss_dssp HHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHH-STTEEECTTTSSSEEEEEETTEEEEEECTTSEE
T ss_pred HHHHHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhh-CcCcEECCccCceEEEEeCCCcEEEEEeCCCEE
Confidence 9999999998 67899999999999999999999999976 488999999999999999999999999999996
No 11
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=100.00 E-value=1.8e-54 Score=376.66 Aligned_cols=150 Identities=33% Similarity=0.583 Sum_probs=145.4
Q ss_pred eeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHHHH
Q psy16701 122 IIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 122 ~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki~~ 201 (272)
..+++|+|||||++++++|||++||.+++|++||||+|||++||+++|+++++||+||||+||||||+++++.|++++++
T Consensus 6 ~~~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~ 85 (182)
T 1ais_A 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQ 85 (182)
T ss_dssp TCEEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCC-CCCcceEEEEEEEEeecCCccChHHHHhHcCCCceeccccCceeEEEEcCCcEEEEEeecCcC
Q psy16701 202 ILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272 (272)
Q Consensus 202 iL~klg~~-~~~~~f~V~NIvas~d~~f~I~Le~la~~~~~~~~YEPE~fPGLvyR~~~pk~~~lIF~SGkv 272 (272)
+|+++|++ .++.+|+|||||||+|++++|||+.||..+ ++++||||+||||+||+.+|++++|||+||||
T Consensus 86 ~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~~YePe~fpgli~R~~~pk~~~lIF~SGKi 156 (182)
T 1ais_A 86 KLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL-PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKI 156 (182)
T ss_dssp HHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHS-TTEECCTTTCSSEEEEETTTTEEEEECTTSEE
T ss_pred HHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhC-CCCEECCccCceEEEEeCCCcEEEEEecCCEE
Confidence 99999998 578999999999999999999999999764 88999999999999999999999999999996
No 12
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=3.2e-54 Score=379.41 Aligned_cols=152 Identities=38% Similarity=0.651 Sum_probs=146.8
Q ss_pred CceeeeEEEEEEEEEEeCCCCChhhHhhcCCCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHH
Q psy16701 120 PEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 199 (272)
Q Consensus 120 ~~~~~~~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki 199 (272)
+...+++|+|||||++++++|||++||.+++|++|||++|||++||+++|+++++||+||||+||||||+++++.|++++
T Consensus 8 ~~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i 87 (198)
T 1mp9_A 8 PYKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRI 87 (198)
T ss_dssp CCCCEEEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCceEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-CCCcceEEEEEEEEeecCCccChHHHHhHcCCCceeccccCceeEEEEcCCcEEEEEeecCcC
Q psy16701 200 AKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272 (272)
Q Consensus 200 ~~iL~klg~~-~~~~~f~V~NIvas~d~~f~I~Le~la~~~~~~~~YEPE~fPGLvyR~~~pk~~~lIF~SGkv 272 (272)
+++|+++|++ .++.+|+|||||||+|++|+|||+.||.. .++++||||+||||+|||.+|++++|||+||||
T Consensus 88 ~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~-~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKi 160 (198)
T 1mp9_A 88 IKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFL-LENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKM 160 (198)
T ss_dssp HHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHH-SSSEECCTTTCSSEEEEETTTTEEEEECTTSEE
T ss_pred HHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhh-cCCcEECCccCCeEEEEeCCCcEEEEEeCCCEE
Confidence 9999999998 67899999999999999999999999976 589999999999999999999999999999996
No 13
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=91.60 E-value=0.19 Score=46.30 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.5
Q ss_pred CCcceEEEEEcCCeeEEEEecCCeEEEEcccCHH
Q psy16701 157 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 190 (272)
Q Consensus 157 e~fpgli~R~~~p~~t~lIF~SGKivitGakS~e 190 (272)
..-|+..|+...+.+++.+|.|||+++.|...++
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~ 60 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQ 60 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHH
Confidence 3458999999999999999999999999975443
No 14
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=90.88 E-value=0.061 Score=48.55 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHH
Q psy16701 156 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 192 (272)
Q Consensus 156 Pe~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~ 192 (272)
+..=|+..|+...+.+++++|.|||++++|...++.+
T Consensus 25 ~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a 61 (257)
T 3vn5_A 25 KINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVL 61 (257)
T ss_dssp ECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHH
T ss_pred ccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHH
Confidence 3445899999999999999999999999997544433
No 15
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=88.73 E-value=0.5 Score=43.52 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=35.4
Q ss_pred hhHhhhCCCceecCCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHH
Q psy16701 54 NQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 103 (272)
Q Consensus 54 ~~la~~~~n~eY~P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a 103 (272)
+++...+...+- +..-|+.+.+.+.+.+++++|.|||++.+|..++..+
T Consensus 14 ~~l~~~~~~~~~-~~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~ 62 (310)
T 2d0b_A 14 DALRAHYEGALS-DRLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEA 62 (310)
T ss_dssp HHHHHHSTTCBC-SSCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHHH
T ss_pred HHHHHHHHhhcc-cCCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHHH
Confidence 444454443222 2445789999999999999999999999997554433
No 16
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=87.94 E-value=0.14 Score=46.24 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=30.4
Q ss_pred CCCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHH
Q psy16701 67 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 104 (272)
Q Consensus 67 P~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~ 104 (272)
++.-|+...+.+.+.+|+++|.|||++.+|...++.+.
T Consensus 25 ~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a~ 62 (257)
T 3vn5_A 25 KINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLK 62 (257)
T ss_dssp ECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHHH
T ss_pred ccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHHH
Confidence 34456788899999999999999999999975544443
No 17
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=53.40 E-value=16 Score=26.20 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=22.6
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 56678899986 689999888887776653
No 18
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=53.01 E-value=14 Score=26.11 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=22.0
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++ ..|..+.+++...++++
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 56678899986 57999988888877665
No 19
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=52.38 E-value=21 Score=25.24 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=21.6
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
++.+|.+|+++ ..|..+.+++.+.+++++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 55666888886 579889888887776543
No 20
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=52.37 E-value=22 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=22.7
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+.+ ..|..+.+++...+++++
T Consensus 79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 56677889886 679999998888877654
No 21
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=51.60 E-value=16 Score=25.70 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=22.2
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
++.+|.+|+++ ..|..+.+++...+++++
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 55667889877 579889988888777653
No 22
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=51.40 E-value=16 Score=25.58 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=21.7
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
++.+|.+|+++ .+|..+.+++.+.++++
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 56677889986 57998988888777654
No 23
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=50.64 E-value=30 Score=25.45 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=22.1
Q ss_pred cCChhHHHHHHHHHHHHHHhcCCC
Q psy16701 97 AKHEHDCKLASRKFAKILKQLGHP 120 (272)
Q Consensus 97 akS~~~a~~a~~k~~~~L~~lg~~ 120 (272)
|...|+|+.-++-+++.|+++|++
T Consensus 56 aendeqakelleliarllqklgyk 79 (96)
T 2jvf_A 56 AENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred ecChHHHHHHHHHHHHHHHHhCCC
Confidence 578999999999999999999996
No 24
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=49.66 E-value=22 Score=26.76 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=22.1
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ .+|..+.+++...+++++
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 55666889986 689999888888776653
No 25
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=49.01 E-value=25 Score=24.96 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=22.0
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
++.+|.+|+++ ..|..+.+++...+++++
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 56666889886 579888888887776654
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=48.92 E-value=97 Score=24.44 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.4
Q ss_pred eEEEEcccCHHHHHHHHHHHHHHHHhC
Q psy16701 180 KLLILGAKHEHDCKLASRKFAKILKQL 206 (272)
Q Consensus 180 KivitGakS~e~~~~A~~ki~~iL~kl 206 (272)
.+.++| +.+.+..|.+.+..++++.
T Consensus 133 ~v~I~G--~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 133 IVKIIG--HFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp EEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEe--CHHHHHHHHHHHHHHHHHH
Confidence 478999 5789999999999998876
No 27
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=46.69 E-value=22 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=20.3
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
++.+|.+|+++ ..|..+.+++...+++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 77 TLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 56667889887 5798888887776654
No 28
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=46.57 E-value=28 Score=25.53 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=21.8
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
++.+|.+|+++ ..|..+.+++...+++++
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 56677889986 679888888877776553
No 29
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=46.41 E-value=14 Score=29.90 Aligned_cols=109 Identities=22% Similarity=0.361 Sum_probs=62.7
Q ss_pred ChhhHhhcCCCeEEcCCCcce-EEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHHHHHHHh-CCCCCCCcceEEE
Q psy16701 141 DLNQINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ-LGHPIKYQGFKIH 218 (272)
Q Consensus 141 dL~~la~~~~n~eYePe~fpg-li~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki~~iL~k-lg~~~~~~~f~V~ 218 (272)
||+.+...+....-....|.| +.|.+...+.. |+|||. +|++++-+.+=+..|++ +++.+..
T Consensus 12 dlea~ekalkemirqarkfagtvtytl~gn~l~--------i~itgv--peqvrkelakeaerl~~efni~v~y------ 75 (170)
T 4hhu_A 12 DLEALEKALKEMIRQARKFAGTVTYTLSGNRLV--------IVITGV--PEQVRKELAKEAERLKAEFNINVQY------ 75 (170)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEE--------EEEESC--CHHHHHHHHHHHHHHHHHHTCEEEE------
T ss_pred cHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEE--------EEEeCC--cHHHHHHHHHHHHHHHHhcceEEEE------
Confidence 566665433222222245655 45777776655 788996 68888888777777753 4544321
Q ss_pred EEEEE----eecCC-ccChHHHHhHcCCCceeccccCce-eEEEEcCCcEEEEE
Q psy16701 219 NIVCT----CDVRF-PVKLDALHHVHSQFSSYEPELFPG-LIYRMVKPRVVLLI 266 (272)
Q Consensus 219 NIvas----~d~~f-~I~Le~la~~~~~~~~YEPE~fPG-LvyR~~~pk~~~lI 266 (272)
.|++| .++.| .=|||.|-....+ ..-....|.| ++|.+.+.+.++.|
T Consensus 76 ~imgsgsgvm~i~f~gddlea~ekalke-mirqarkfagtvtytl~gn~l~i~i 128 (170)
T 4hhu_A 76 QIMGSGSGVMVIVFEGDDLEALEKALKE-MIRQARKFAGTVTYTLSGNRLVIVI 128 (170)
T ss_dssp EEECTTCCEEEEEEECSCHHHHHHHHHH-HHHHHHHTTCEEEEEECSSEEEEEE
T ss_pred EEEeCCceEEEEEEecCcHHHHHHHHHH-HHHHHHhhcceEEEEEeCCEEEEEE
Confidence 12222 23333 2378888654322 2223345777 47899888866655
No 30
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=45.62 E-value=34 Score=26.66 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=28.3
Q ss_pred EEEEecCCeEE-----------EEc-ccCHHHHHHHHHHHHHHHHhC
Q psy16701 172 TCLAFQSGKLL-----------ILG-AKHEHDCKLASRKFAKILKQL 206 (272)
Q Consensus 172 t~lIF~SGKiv-----------itG-akS~e~~~~A~~ki~~iL~kl 206 (272)
|+.+|..|+++ +.| ..+.+++...++.+++-.++-
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~~g 126 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRG 126 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhhcC
Confidence 34488899988 889 899999999999998776543
No 31
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=45.56 E-value=28 Score=23.99 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=22.0
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
++.+|.+|+++ ..|..+.+++.+.+++++
T Consensus 72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 56677889985 579888888888776654
No 32
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=45.22 E-value=30 Score=24.55 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ ..|. +.+++++.+++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 57778899985 5788 8888877776654
No 33
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=45.01 E-value=22 Score=27.94 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=20.0
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ ..|+.+.++++..+++++
T Consensus 94 T~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l 124 (142)
T 2es7_A 94 ATLVFTDGKLRGALSGIHPWAELLTLMRSIV 124 (142)
T ss_dssp EEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 66778899986 689999888877766554
No 34
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=43.96 E-value=28 Score=25.10 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=26.8
Q ss_pred eeEEEEecCCe--------EEEEcccCHHHHHHHHHHHHHHHH
Q psy16701 170 RTTCLAFQSGK--------LLILGAKHEHDCKLASRKFAKILK 204 (272)
Q Consensus 170 ~~t~lIF~SGK--------ivitGakS~e~~~~A~~ki~~iL~ 204 (272)
.+.+.|-.+|. |.|+| +.+.+..|.+.+..+++
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 46777777887 99999 78899999988887764
No 35
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=42.67 E-value=18 Score=25.41 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
++.+|.+|+++ ..|..+.+++...++++
T Consensus 75 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 75 TVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred EEEEEeCCcEeeeEeCCCCHHHHHHHHHHH
Confidence 55667889876 67988888877766544
No 36
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=42.36 E-value=34 Score=25.77 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=22.0
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 56677889886 689888888877766543
No 37
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=42.35 E-value=27 Score=26.29 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=26.7
Q ss_pred eEEEEecCCeEE--EEcccCHHHHHHHHHHHHHHH
Q psy16701 171 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKIL 203 (272)
Q Consensus 171 ~t~lIF~SGKiv--itGakS~e~~~~A~~ki~~iL 203 (272)
.+++|..+|+++ ..|..+.+++...++++++.+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467788999996 578889999988888877654
No 38
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=42.28 E-value=26 Score=24.46 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+.+ .+|. +.++++..++++
T Consensus 76 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 76 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 67777899986 6788 888887776654
No 39
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=41.93 E-value=37 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=27.4
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHHHHHHh
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILKQ 205 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~~iL~k 205 (272)
|+.+|.+|+++ ..|..+.+++...++++++.-.+
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~ 116 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEE 116 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccccc
Confidence 67778899985 68999999999998888876444
No 40
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=40.57 E-value=19 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=22.3
Q ss_pred EEEEecCCeEEE--EcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLLI--LGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKivi--tGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++- .|..+.+++.+.++++
T Consensus 74 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 74 TVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred EEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 678889999875 7998988888776654
No 41
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=40.45 E-value=27 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++ ..|. +.+++++.++++
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 57788999987 5788 888888777654
No 42
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=40.08 E-value=40 Score=25.49 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.2
Q ss_pred cCCeEEEEcccCHHHHHHHHHHHHHHHHhC
Q psy16701 177 QSGKLLILGAKHEHDCKLASRKFAKILKQL 206 (272)
Q Consensus 177 ~SGKivitGakS~e~~~~A~~ki~~iL~kl 206 (272)
.++.|.|+|. .+++..|.+.|..+++++
T Consensus 66 ~~~~ItI~G~--~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 GEDKITLEGP--TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp SSCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHHHHHH
Confidence 5789999996 788999999998888776
No 43
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=39.87 E-value=34 Score=25.19 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=19.1
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
|+.+|.+|+.+ ++|+ +.+++.+.+++
T Consensus 76 T~~~~~~G~~v~~~~G~-~~~~l~~~i~k 103 (105)
T 3zzx_A 76 TFLFMKNGQKLDSLSGA-NYDKLLELVEK 103 (105)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCc-CHHHHHHHHHh
Confidence 67888999986 5786 67776666544
No 44
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=39.81 E-value=34 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=23.2
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~~ 201 (272)
|+.+|.+|+++ ..|..+.+++.+.+++++.
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLS 143 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence 57778899987 6788898888887766543
No 45
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=39.80 E-value=37 Score=28.22 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=30.0
Q ss_pred eeEEEEecCCeEE-----------EEcccC-HHHHHHHHHHHHHHHHh
Q psy16701 170 RTTCLAFQSGKLL-----------ILGAKH-EHDCKLASRKFAKILKQ 205 (272)
Q Consensus 170 ~~t~lIF~SGKiv-----------itGakS-~e~~~~A~~ki~~iL~k 205 (272)
-.|+.+|.+|+.+ +.|+.+ .+++.+.++.+++--++
T Consensus 96 iPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~ 143 (160)
T 2av4_A 96 PVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARK 143 (160)
T ss_dssp SEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhc
Confidence 3689999999997 779977 88999999988887544
No 46
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=38.84 E-value=20 Score=25.85 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
++.+|.+|+++ .+|. +.+++.+.++++
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 56778889885 5788 888877766543
No 47
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=38.38 E-value=44 Score=24.93 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=21.2
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~~ 201 (272)
|+.+|.+|+++ ..|. +.++++..++++++
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~ 132 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILD 132 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence 56677899987 5787 77887777666554
No 48
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=38.23 E-value=41 Score=26.34 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.2
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ ..|..+.+++.+.+++.+
T Consensus 121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 121 AFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 56777899987 789988888777766543
No 49
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=38.13 E-value=41 Score=27.08 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=24.8
Q ss_pred eEEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 171 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 171 ~t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
-|+++|.+|+.+ +.|+.+.+++...+++++
T Consensus 93 PTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 489999999996 479999888888776654
No 50
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=38.10 E-value=46 Score=24.95 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.3
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ .+| .+.+++.+.+++++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 57778899986 578 47777777766654
No 51
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=37.51 E-value=34 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.3
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLAS 196 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~ 196 (272)
++.+|.+|+++ ..|..+.+++.+.+
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l 100 (112)
T 2voc_A 74 TLLVLKDGEVVETSVGFKPKEALQELV 100 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHH
Confidence 56666899987 68998887765443
No 52
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=37.24 E-value=37 Score=24.98 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++ ..|. +.+++++.++++
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 56777889886 5788 888877776654
No 53
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=35.50 E-value=19 Score=25.31 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
++.+|.+|+++ ..|..+.+++...+++
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 74 TLILFKGGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTTT
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHH
Confidence 55566889876 5798888887766544
No 54
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=35.47 E-value=45 Score=25.63 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=28.6
Q ss_pred eEEEEecCCeEE--EEcccCHHHHHHHHHHHHHHHHh
Q psy16701 171 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILKQ 205 (272)
Q Consensus 171 ~t~lIF~SGKiv--itGakS~e~~~~A~~ki~~iL~k 205 (272)
.+++|..+|+++ ..|..+.+++...++++++.+++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 164 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK 164 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 588899999997 46888899998888888776643
No 55
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=34.71 E-value=41 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=22.5
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ .+|+.+.+..+.-++++.
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 78889999986 589998888776665554
No 56
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=34.32 E-value=53 Score=22.94 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=20.9
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|++|+++ ..|..+.++.+..++++
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 56788999986 57888887776666554
No 57
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=33.21 E-value=57 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
|+.+|.+|+++ .+|.. .+++...+++++
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 57788899986 67887 777777666543
No 58
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=32.83 E-value=23 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=19.7
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
|+.+|.+|+++ ..|..+.+++.+.+++
T Consensus 92 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 92 TLLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 45556889986 7899888887766543
No 59
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=32.61 E-value=40 Score=23.51 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|.+|+++ ..|..+.++....++++
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHH
Confidence 56777999987 57888888777666654
No 60
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=32.15 E-value=45 Score=23.65 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|++|+++ ..|..+.++....++++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 109 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDF 109 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 67788999987 67988887776655554
No 61
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.12 E-value=63 Score=23.57 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=19.6
Q ss_pred EEEEe-cCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAF-QSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF-~SGKiv--itGakS~e~~~~A~~ki 199 (272)
++.+| .+|+++ .+|..+.+++...+++.
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 55666 789987 56988887776665543
No 62
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=32.08 E-value=60 Score=22.75 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=22.1
Q ss_pred eEEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 82 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 82 ~t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
.|+.+|.+|+.+ ..|..+.++.+..+++.
T Consensus 78 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 108 (111)
T 3gnj_A 78 PQILYFKDGEYKGKMAGDVEDDEVEQMIADV 108 (111)
T ss_dssp CEEEEEETTEEEEEEESSCCHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeccCCHHHHHHHHHHH
Confidence 367788999986 67888888777666655
No 63
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=31.70 E-value=80 Score=26.14 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=35.1
Q ss_pred EEEcCCceEEEeecCCc-EEEEecCChh------HHHHHHHHHHHHHHhcCC
Q psy16701 75 MKILNPRTTCLAFQSGK-LLILGAKHEH------DCKLASRKFAKILKQLGH 119 (272)
Q Consensus 75 ~R~~~P~~t~lIf~sGK-iv~tGakS~~------~a~~a~~k~~~~L~~lg~ 119 (272)
+|-+.++.-+.|..++. -++.|.-.+. ++..++.++++-|.+.|+
T Consensus 115 i~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~~GY 166 (166)
T 3nec_A 115 TMCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166 (166)
T ss_dssp EEEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 34455666788888898 7777766655 899999999999999885
No 64
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=31.64 E-value=26 Score=27.17 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=39.7
Q ss_pred CeEEcCCCcceEEEEEcCCeeEEEEecCCeEEE-EcccCHHHHHHHHHHHHHHHHhCC
Q psy16701 151 YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI-LGAKHEHDCKLASRKFAKILKQLG 207 (272)
Q Consensus 151 n~eYePe~fpgli~R~~~p~~t~lIF~SGKivi-tGakS~e~~~~A~~ki~~iL~klg 207 (272)
.+..|.++++++.|-- +..++.-|+.++.+. .+--|++|+..=.+.+.+.|+.|+
T Consensus 57 ~vv~~~~l~~~~~y~~--~~p~Fh~w~~~~~~~GLnF~se~eA~~F~~~v~~al~~l~ 112 (112)
T 1evh_A 57 QVVINCAIPKGLKYNQ--ATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLN 112 (112)
T ss_dssp CEEEEEEECTTCCCBC--CSSSEEEEECSSCEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred cEEEeeEecCCceEEe--cCccceeEecCCEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 4666677777777763 344577777777554 566789999999888888888763
No 65
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=31.49 E-value=63 Score=22.89 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=19.3
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++ ..|. +.+++.+.++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 109 (111)
T 2pu9_C 81 TFKILKENSVVGEVTGA-KYDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSSSEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCC-CHHHHHHHHHHh
Confidence 57788999985 5787 477776666554
No 66
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=31.13 E-value=60 Score=22.43 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=20.9
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|.+|+++ .+|..+.++.+..++++
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 67788999986 57888888777666543
No 67
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=31.12 E-value=72 Score=24.41 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=27.0
Q ss_pred eEEEEecCCeEEE--EcccCHHHHHHHHHHHHHHHHhC
Q psy16701 171 TTCLAFQSGKLLI--LGAKHEHDCKLASRKFAKILKQL 206 (272)
Q Consensus 171 ~t~lIF~SGKivi--tGakS~e~~~~A~~ki~~iL~kl 206 (272)
.+++| .+|+|+- .|....++.+..++.+.+.|+++
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHh
Confidence 68889 9999985 45555677788888888887765
No 68
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=31.02 E-value=61 Score=23.52 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=19.3
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++ .+|.. .+++.+.++++
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 57788999986 57875 77766666543
No 69
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=30.93 E-value=72 Score=22.82 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=24.5
Q ss_pred ceEEEeecCCc--------EEEEecCChhHHHHHHHHHHHHHH
Q psy16701 81 RTTCLAFQSGK--------LLILGAKHEHDCKLASRKFAKILK 115 (272)
Q Consensus 81 ~~t~lIf~sGK--------iv~tGakS~~~a~~a~~k~~~~L~ 115 (272)
.+.+.|-.+|. +.++| +.+....|.+.+..+++
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 35667777787 99999 77888877777766654
No 70
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=30.91 E-value=60 Score=22.67 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=20.4
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|++|+++ ..|..+.++.+..+++.
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHh
Confidence 66777899986 57888887776655544
No 71
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=30.81 E-value=37 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASR 197 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ 197 (272)
|+.+|.+|+++ ..|.. .+++++.++
T Consensus 86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 86 TFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 46678899987 78887 777665544
No 72
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=30.17 E-value=11 Score=27.43 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
|+.+|.+|+++ .+|..+.+++.+.+++
T Consensus 87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~ 115 (121)
T 2i1u_A 87 TLILFKDGQPVKRIVGAKGKAALLRELSD 115 (121)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTCS
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHHH
Confidence 56677889886 5788888776665443
No 73
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=29.73 E-value=80 Score=22.30 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=18.9
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~~ 201 (272)
|+.+|.+|+++ ..|. +.+++++.+++++.
T Consensus 79 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~ 109 (112)
T 3d6i_A 79 YFIIIHKGTILKELSGA-DPKEYVSLLEDCKN 109 (112)
T ss_dssp EEEEEETTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEecCC-CHHHHHHHHHHHHh
Confidence 45677889886 4676 45567766666544
No 74
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.72 E-value=62 Score=24.42 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=25.3
Q ss_pred cceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHHHHHhc
Q psy16701 70 FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQL 117 (272)
Q Consensus 70 f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~~L~~l 117 (272)
|+++.+++.+ .++.+.++|. .++...|...+..+++++
T Consensus 56 ~~~v~I~fp~--------~~~~ItI~G~--~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 56 MPKVHIEFTE--------GEDKITLEGP--TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CSSSEEEECS--------SSCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEeCC--------CCCEEEEECC--HHHHHHHHHHHHHHHHHH
Confidence 4455555544 5788999995 666777766666666554
No 75
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=29.46 E-value=58 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=18.7
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
++.+|.+|+++ ..| .+.+++.+.++++
T Consensus 75 t~~~~~~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 75 TFVFIKDGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence 46677888886 468 4777777766553
No 76
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=29.38 E-value=61 Score=24.21 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=21.3
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|++|+++ .+|..+.++.+..++++
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDAN 126 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHh
Confidence 66777999987 67888888777666554
No 77
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=29.07 E-value=57 Score=23.47 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++ ..|. +.+++++.++++
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 116 (117)
T 2xc2_A 88 TFIAIKNGEKVGDVVGA-SIAKVEDMIKKF 116 (117)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred eEEEEeCCcEEEEEeCC-CHHHHHHHHHHh
Confidence 57778899986 5684 677776666543
No 78
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=28.89 E-value=68 Score=22.54 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=20.6
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|++|+++ ..|..+.++.+..++++
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 111 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTH 111 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHH
Confidence 66777999987 56888887777665554
No 79
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=28.84 E-value=55 Score=25.56 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=19.3
Q ss_pred eEEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 82 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 82 ~t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
.|+.+|++|+++ ..|..+.++.+..+++.
T Consensus 93 PT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~ 123 (142)
T 2es7_A 93 PATLVFTDGKLRGALSGIHPWAELLTLMRSI 123 (142)
T ss_dssp SEEEEESCC----CEESCCCHHHHHHHHHHH
T ss_pred CeEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 377888999986 67988887766555554
No 80
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=28.38 E-value=71 Score=23.61 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++ ..|. +.+++++.++++
T Consensus 94 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 94 TFMFLKEGKILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHh
Confidence 57778899986 5785 777777766554
No 81
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=28.30 E-value=67 Score=23.97 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=24.9
Q ss_pred eEEEeecCCcEE--EEecCChhHHHHHHHHHHHHH
Q psy16701 82 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKIL 114 (272)
Q Consensus 82 ~t~lIf~sGKiv--~tGakS~~~a~~a~~k~~~~L 114 (272)
++++|..+|+++ ..|..+.++....++++.+.+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467777999996 568888888887777765544
No 82
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=28.03 E-value=75 Score=23.12 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=19.2
Q ss_pred EEEEec-CCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQ-SGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~-SGKiv--itGakS~e~~~~A~~k 198 (272)
++.+|. +|+++ ..|..+.+++.+.+++
T Consensus 85 t~~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 114 (126)
T 2l57_A 85 TTVFLDKEGNKFYVHQGLMRKNNIETILNS 114 (126)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEecCCCCHHHHHHHHHH
Confidence 566666 89985 5788888877666544
No 83
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=28.02 E-value=62 Score=23.78 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=22.0
Q ss_pred ccCHHHHHHHHHHHHHHHHhCCCC
Q psy16701 186 AKHEHDCKLASRKFAKILKQLGHP 209 (272)
Q Consensus 186 akS~e~~~~A~~ki~~iL~klg~~ 209 (272)
|.+.|++++-++-+++.|+++|++
T Consensus 56 aendeqakelleliarllqklgyk 79 (96)
T 2jvf_A 56 AENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred ecChHHHHHHHHHHHHHHHHhCCC
Confidence 678899999999999999999985
No 84
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=27.90 E-value=75 Score=23.87 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=31.0
Q ss_pred cCCceEEEeecCC-cEEEEe-cCChhHHHH-HHHHHHHHHHhcCC
Q psy16701 78 LNPRTTCLAFQSG-KLLILG-AKHEHDCKL-ASRKFAKILKQLGH 119 (272)
Q Consensus 78 ~~P~~t~lIf~sG-Kiv~tG-akS~~~a~~-a~~k~~~~L~~lg~ 119 (272)
.+|.-++.++-+| +.+.+| .+|..+|+. |++..++.|.+.+.
T Consensus 34 H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 34 NRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp SSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 3456778888899 677777 678888886 57777777776553
No 85
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=27.61 E-value=1.3e+02 Score=23.30 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=33.8
Q ss_pred EEcCCceEEEeecCCcEEEEecCCh----hHHHHHHHHHHHHHHhcCC
Q psy16701 76 KILNPRTTCLAFQSGKLLILGAKHE----HDCKLASRKFAKILKQLGH 119 (272)
Q Consensus 76 R~~~P~~t~lIf~sGKiv~tGakS~----~~a~~a~~k~~~~L~~lg~ 119 (272)
|-+..+.-+.|.++++.++.|.-.+ .++..+++++++.|.+.|+
T Consensus 78 ~~kk~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 78 YGKKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp EEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred EeecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3333455677888888888876554 5899999999999999875
No 86
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=27.42 E-value=50 Score=24.27 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=26.1
Q ss_pred eEEEEecCCe--------EEEEcccCHHHHHHHHHHHHHHHHhCC
Q psy16701 171 TTCLAFQSGK--------LLILGAKHEHDCKLASRKFAKILKQLG 207 (272)
Q Consensus 171 ~t~lIF~SGK--------ivitGakS~e~~~~A~~ki~~iL~klg 207 (272)
+.+.|-..|. |.|+| +.+.++.|.+.+..++++..
T Consensus 46 a~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 46 VKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp SEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCCS
T ss_pred CeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhccC
Confidence 4455555554 88998 67899999999999887653
No 87
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=27.16 E-value=1.5e+02 Score=20.41 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=26.1
Q ss_pred CCceEEEeecCCcEEEEe-cCChhHHHH-HHHHHHHHHHhc
Q psy16701 79 NPRTTCLAFQSGKLLILG-AKHEHDCKL-ASRKFAKILKQL 117 (272)
Q Consensus 79 ~P~~t~lIf~sGKiv~tG-akS~~~a~~-a~~k~~~~L~~l 117 (272)
+|.-++.+.-+|+.. +| .+|..+|+. |++...+.|.++
T Consensus 33 ~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 33 APLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence 466777788788875 55 478888886 566666666543
No 88
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=26.76 E-value=83 Score=22.03 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~~ 201 (272)
++.+|.+|+++ ..|. +.+++.+.++++++
T Consensus 82 t~~~~~~G~~~~~~~g~-~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 82 TFIFLKDGKLVDKTVGA-DKDGLPTLVAKHAT 112 (113)
T ss_dssp EEEEEETTEEEEEEECC-CTTHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecC-CHHHHHHHHHHhhc
Confidence 56677899985 4774 77888888776653
No 89
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.64 E-value=83 Score=22.86 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=21.4
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~~ 201 (272)
|+.+|..|+.+ ..|..+.+++...+++.+.
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 56677778865 5788888888777666554
No 90
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=26.45 E-value=97 Score=24.70 Aligned_cols=32 Identities=6% Similarity=-0.130 Sum_probs=26.8
Q ss_pred eEEEEecCCeEEE--EcccCHHHHHHHHHHHHHH
Q psy16701 171 TTCLAFQSGKLLI--LGAKHEHDCKLASRKFAKI 202 (272)
Q Consensus 171 ~t~lIF~SGKivi--tGakS~e~~~~A~~ki~~i 202 (272)
-|+.+|++|+.+= .|+.+.+++...+++++..
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l~~ 124 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAE 124 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 5899999999975 6999999998888876643
No 91
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=26.38 E-value=71 Score=25.85 Aligned_cols=30 Identities=3% Similarity=-0.006 Sum_probs=24.1
Q ss_pred EEEEecCCeE--EEEcccCHHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKL--LILGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 172 t~lIF~SGKi--vitGakS~e~~~~A~~ki~~ 201 (272)
++.|+.+|+. .+.|+.+.+++.++++.+..
T Consensus 179 t~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 179 ALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 5666779998 78999999999988776653
No 92
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.27 E-value=82 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=28.3
Q ss_pred eeEEEEecCC-----eEEEEcccCHHHHHHHHHHHHHHHHhC
Q psy16701 170 RTTCLAFQSG-----KLLILGAKHEHDCKLASRKFAKILKQL 206 (272)
Q Consensus 170 ~~t~lIF~SG-----KivitGakS~e~~~~A~~ki~~iL~kl 206 (272)
.+.+.|...| .|.|+|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHH
Confidence 5677777778 8999996 588999998888887765
No 93
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=26.23 E-value=82 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=24.8
Q ss_pred EEEEcccCHHHHHHHHHHHHHHHHhCCCCC
Q psy16701 181 LLILGAKHEHDCKLASRKFAKILKQLGHPI 210 (272)
Q Consensus 181 ivitGakS~e~~~~A~~ki~~iL~klg~~~ 210 (272)
|++|| +|.-+++..++.+.+.|++.|.++
T Consensus 38 VIatg-~S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 38 LICHG-NSEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEc-CCHHHHHHHHHHHHHHHHHcCCcc
Confidence 66776 699999999999999999988653
No 94
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=26.17 E-value=1.4e+02 Score=23.31 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=31.3
Q ss_pred CceEEEeecCCcEEEEecCCh----hHHHHHHHHHHHHHHhcCC
Q psy16701 80 PRTTCLAFQSGKLLILGAKHE----HDCKLASRKFAKILKQLGH 119 (272)
Q Consensus 80 P~~t~lIf~sGKiv~tGakS~----~~a~~a~~k~~~~L~~lg~ 119 (272)
.+.-+.|.++++.++.|.-.+ .++..+++++++.|++.|+
T Consensus 87 g~~Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 87 GPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp TTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 344577778888888776554 4789999999999999885
No 95
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=26.16 E-value=73 Score=22.19 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=19.8
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
|+.+|.+|+++ ..|..+.+++...+++
T Consensus 81 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 81 TLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred EEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 56677888874 5788888888776654
No 96
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=25.85 E-value=80 Score=22.90 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=20.1
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|++|+++ ..|..+.++.+..++++
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 66777999986 56887877766655544
No 97
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=25.81 E-value=96 Score=21.75 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=25.4
Q ss_pred CCceEEEeecCCcEEEEec-CChhHHHH-HHHHHHHHHH
Q psy16701 79 NPRTTCLAFQSGKLLILGA-KHEHDCKL-ASRKFAKILK 115 (272)
Q Consensus 79 ~P~~t~lIf~sGKiv~tGa-kS~~~a~~-a~~k~~~~L~ 115 (272)
+|.-++.++-+|+....|. +|..+|+. |++.....|+
T Consensus 35 ~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 35 VTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp CEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 3556777777888877774 78888886 4555555553
No 98
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=25.66 E-value=1.1e+02 Score=21.19 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=24.4
Q ss_pred eEEEEecCC----eEEEEcccCHHHHHHHHHHHHHHHHh
Q psy16701 171 TTCLAFQSG----KLLILGAKHEHDCKLASRKFAKILKQ 205 (272)
Q Consensus 171 ~t~lIF~SG----KivitGakS~e~~~~A~~ki~~iL~k 205 (272)
+.+.|-..| .+.++|. .+.+..|.+.+...|++
T Consensus 36 a~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 36 ARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 444444444 4888885 89999999999988864
No 99
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=25.61 E-value=50 Score=22.92 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=20.1
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
++.+|.+|+++ ..|..+.+++.+.+++
T Consensus 76 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 76 TLIVFKDGQPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Confidence 56677888875 4788888888776654
No 100
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=25.37 E-value=1.1e+02 Score=21.17 Aligned_cols=37 Identities=8% Similarity=-0.085 Sum_probs=26.4
Q ss_pred CCceEEEeecCCcEEEEec--CChhHHHH-HHHHHHHHHH
Q psy16701 79 NPRTTCLAFQSGKLLILGA--KHEHDCKL-ASRKFAKILK 115 (272)
Q Consensus 79 ~P~~t~lIf~sGKiv~tGa--kS~~~a~~-a~~k~~~~L~ 115 (272)
+|.-++.++-+|+...+|. +|..+|+. |++...+.|+
T Consensus 33 ~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 33 KSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp SCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 4667888888998888875 58888886 4555555553
No 101
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=25.30 E-value=99 Score=23.27 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=24.4
Q ss_pred eeEEEEecCCeEEE--EcccCHHHHHHHHHHHHH
Q psy16701 170 RTTCLAFQSGKLLI--LGAKHEHDCKLASRKFAK 201 (272)
Q Consensus 170 ~~t~lIF~SGKivi--tGakS~e~~~~A~~ki~~ 201 (272)
..+++|-++|+++- .|..+.+++.+.++++++
T Consensus 128 ~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 161 (164)
T 2ggt_A 128 IIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR 161 (164)
T ss_dssp CEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred ceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 37889999999985 577788888777766543
No 102
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=25.17 E-value=73 Score=22.85 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=21.4
Q ss_pred EEEEe-cCCeEE-EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAF-QSGKLL-ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF-~SGKiv-itGakS~e~~~~A~~ki~ 200 (272)
++.++ .+|+++ ..|..+.+++.+.+++++
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 44555 699996 788888888887776654
No 103
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=25.10 E-value=90 Score=24.93 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.5
Q ss_pred EEEEcccCHHHHHHHHHHHHHHHHhCCCC
Q psy16701 181 LLILGAKHEHDCKLASRKFAKILKQLGHP 209 (272)
Q Consensus 181 ivitGakS~e~~~~A~~ki~~iL~klg~~ 209 (272)
|++|| +|.-+++..++.+.+.|++.|.+
T Consensus 38 VIaTg-~S~rqv~Aiad~v~~~lk~~g~~ 65 (130)
T 2id1_A 38 IVATG-DSNRQVKALANSVQVKLKEAGVD 65 (130)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEc-CCHHHHHHHHHHHHHHHHHcCCc
Confidence 67776 68999999999999999999874
No 104
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=25.06 E-value=37 Score=24.68 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=18.0
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLAS 196 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~ 196 (272)
|+.+|.+|+++ ..|..+.+++...+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 90 GFVHITDGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp EEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred eEEEEECCEEEEEecCCCCHHHHHHHh
Confidence 56677888876 46888887776554
No 105
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=24.91 E-value=78 Score=25.19 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=24.2
Q ss_pred CCeEEEE--cccCHHHHHHHHHHHHHHHHh
Q psy16701 178 SGKLLIL--GAKHEHDCKLASRKFAKILKQ 205 (272)
Q Consensus 178 SGKivit--GakS~e~~~~A~~ki~~iL~k 205 (272)
+|+.++. |+.+.+++...++.++...++
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~~~ 188 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKERA 188 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 8999988 999999999999988877543
No 106
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=24.68 E-value=73 Score=22.82 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.5
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
|+.+|.+|+++ .+|..+.++++..++.
T Consensus 75 t~~~~~~G~~v~~~~G~~~~~~l~~~~~~ 103 (110)
T 2l6c_A 75 TLVFIRDGKVAKVFSGIMNPRELQALYAS 103 (110)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHH
Confidence 56677899985 4698888887766544
No 107
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.56 E-value=84 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.9
Q ss_pred CCeEEEEcccCHHHHHHHHHHHHHHHHhC
Q psy16701 178 SGKLLILGAKHEHDCKLASRKFAKILKQL 206 (272)
Q Consensus 178 SGKivitGakS~e~~~~A~~ki~~iL~kl 206 (272)
+|.|.|+|. .+.+..|.+.+..++++.
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcc
Confidence 689999996 889999999998888664
No 108
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=23.99 E-value=34 Score=25.74 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=22.2
Q ss_pred EEEEe-cCCeEE----EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAF-QSGKLL----ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF-~SGKiv----itGakS~e~~~~A~~ki~ 200 (272)
++.+| .+|+++ ..|..+.+++.+.++++.
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~ 127 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ 127 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence 56677 899996 789999888877766543
No 109
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=23.67 E-value=1.1e+02 Score=24.74 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=44.5
Q ss_pred CCCeEEcC-CCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHHHHHHHhCCCCC
Q psy16701 149 VRYSEYNP-GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPI 210 (272)
Q Consensus 149 ~~n~eYeP-e~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki~~iL~klg~~~ 210 (272)
.+.++=+| -.|.-+..|+..+.-.-.=+...|.+|-|.+..+-=.+.++++.+.|+++|+.+
T Consensus 19 vP~V~Id~~G~fKYVLi~v~~~~~~~~~~~~~k~iVRG~~~a~yH~diyd~~~~el~~~Gl~~ 81 (135)
T 2nmm_A 19 IPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCDC 81 (135)
T ss_dssp SCSEEECSSSEEEEEEEEEECCC-------CEEEEEEEETTCSSHHHHHHHHHHHHHTTTCEE
T ss_pred CCeEEECCCCcEEEEEEEEEeCCCCCCcccceeEEEEECCCccHHHHHHHHHHHHHHHcCCee
Confidence 57788888 789999999886631110011238999997776666788899999999998754
No 110
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=23.63 E-value=66 Score=23.24 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=20.4
Q ss_pred EEEEe-cCCeEE-EE---cccCHHHHHHHHHHHH
Q psy16701 172 TCLAF-QSGKLL-IL---GAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF-~SGKiv-it---GakS~e~~~~A~~ki~ 200 (272)
++.++ .+|+++ .. |..+.+++.+.+++++
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence 44455 799997 66 8888888877776643
No 111
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=23.61 E-value=1.7e+02 Score=23.53 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=44.3
Q ss_pred hCCCceecC-CCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHHHHHhcCCC
Q psy16701 59 RVRYSEYNP-GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 120 (272)
Q Consensus 59 ~~~n~eY~P-~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~~L~~lg~~ 120 (272)
.++.++-+| .+|.=+.+|+..+..+-.=+...|.++.|.+..+-=....+++.+.|+++|+.
T Consensus 18 ~vP~V~Id~~G~fKYVLi~v~~~~~~~~~~~~~k~iVRG~~~a~yH~diyd~~~~el~~~Gl~ 80 (135)
T 2nmm_A 18 LIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCD 80 (135)
T ss_dssp GSCSEEECSSSEEEEEEEEEECCC-------CEEEEEEEETTCSSHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEECCCCcEEEEEEEEEeCCCCCCcccceeEEEEECCCccHHHHHHHHHHHHHHHcCCe
Confidence 467788898 79999999998774221111124899999776666667788899999998873
No 112
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=23.59 E-value=1.4e+02 Score=20.33 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=23.2
Q ss_pred CCceEEEeecCCcEEEEe-cCChhHHHH-HHHHHHHHHH
Q psy16701 79 NPRTTCLAFQSGKLLILG-AKHEHDCKL-ASRKFAKILK 115 (272)
Q Consensus 79 ~P~~t~lIf~sGKiv~tG-akS~~~a~~-a~~k~~~~L~ 115 (272)
+|.-++.++-+|+ ..+| .+|..+|+. |++.....|+
T Consensus 31 ~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 31 KREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp GCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 3566777777887 6555 467888876 4555555543
No 113
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=23.57 E-value=1.1e+02 Score=21.45 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=19.4
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~ki~ 200 (272)
++.+|.+|+++ ..|. +.+++...+++++
T Consensus 84 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 84 TFLFIKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 56677888885 5774 6777777766554
No 114
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=23.48 E-value=96 Score=23.30 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=25.0
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKFAKI 113 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~~~~ 113 (272)
|+.+|.+|+++ ..|..+.++....+++++..
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 113 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQH 113 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhcc
Confidence 77888999985 67988888888877777654
No 115
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=23.44 E-value=1.1e+02 Score=23.57 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=26.4
Q ss_pred EEEeecCCcEE-----------EEe-cCChhHHHHHHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL-----------ILG-AKHEHDCKLASRKFAKILK 115 (272)
Q Consensus 83 t~lIf~sGKiv-----------~tG-akS~~~a~~a~~k~~~~L~ 115 (272)
|..+|.+|+.+ ..| ..+.++....++++.+-.+
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 55599999998 889 8888888888888766554
No 116
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=23.32 E-value=98 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=19.6
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|++|+++ ..|. +.++.+..++++
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 67888999987 5687 777766655543
No 117
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=23.32 E-value=92 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|.+|+++ ..|..+.++....++++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~ 136 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPY 136 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHH
Confidence 77888999987 67888877766555544
No 118
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=23.24 E-value=1.7e+02 Score=22.58 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=34.1
Q ss_pred EEcCCceEEEeecCCcEEEEecCCh----hHHHHHHHHHHHHHHhcCC
Q psy16701 76 KILNPRTTCLAFQSGKLLILGAKHE----HDCKLASRKFAKILKQLGH 119 (272)
Q Consensus 76 R~~~P~~t~lIf~sGKiv~tGakS~----~~a~~a~~k~~~~L~~lg~ 119 (272)
|-+..+.-+.+.++++.++.|.-.+ .++..+++++++.|.+.|+
T Consensus 78 ~~kk~~~Gi~i~kT~~aivI~~y~e~~~~g~~~~~ve~ladYL~~~gy 125 (125)
T 1ypr_A 78 YGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp EEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEecCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3334455678888899888886554 5889999999999999875
No 119
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=23.21 E-value=88 Score=25.06 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=23.2
Q ss_pred eEEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 82 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 82 ~t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
.|+++|++|+.+ .+|+.+.++.+..++++
T Consensus 93 PTlilFk~G~~v~~~~G~~~k~~l~~~i~~~ 123 (140)
T 2qgv_A 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 (140)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEecCCCHHHHHHHHHHH
Confidence 489999999996 56998888777666655
No 120
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=23.18 E-value=85 Score=22.01 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=16.2
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
|+.+|.+|+.+ .+|.. .+++.+.+++
T Consensus 77 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~ 104 (107)
T 1gh2_A 77 TFQFFRNKVRIDQYQGAD-AVGLEEKIKQ 104 (107)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCC-HHHHHHHHHH
Confidence 56677888876 56854 4445555544
No 121
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=22.93 E-value=73 Score=22.00 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=17.6
Q ss_pred EEEEecCCeEE--EEcccCHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLL--ILGAKHEHDCKLASRK 198 (272)
Q Consensus 172 t~lIF~SGKiv--itGakS~e~~~~A~~k 198 (272)
|+.+|.+|+++ .+| .+.+++.+.+++
T Consensus 77 t~~~~~~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 77 TFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp EEEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEEcC-CCHHHHHHHHHH
Confidence 56778889885 467 567666665544
No 122
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=22.86 E-value=1e+02 Score=25.27 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=44.2
Q ss_pred CCCeEEcC-CCcceEEEEEcCCeeEEEEecCCeEEEEcccCHHHHHHHHHHHHHHHHhCCCCC
Q psy16701 149 VRYSEYNP-GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPI 210 (272)
Q Consensus 149 ~~n~eYeP-e~fpgli~R~~~p~~t~lIF~SGKivitGakS~e~~~~A~~ki~~iL~klg~~~ 210 (272)
.+.++=+| -.|.-+..|+..+.-.-.=+...|.+|-|.+..+-=.+.++++.+.|+++|+.+
T Consensus 28 vP~V~Id~~G~fKYVLi~v~~~~~~~~~~~~~k~IVRG~~~a~YH~Diyd~~~~el~~~Gl~~ 90 (144)
T 2hw4_A 28 IPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCDC 90 (144)
T ss_dssp SCSEEECCSEEEEEEEEEEECC--------CEEEEEEECTTCSSHHHHHHHHHHHHHHTTCEE
T ss_pred CCeEEECCCCcEEEEEEEEEeCCCCCccccceeEEEEECCCchHHHHHHHHHHHHHHHcCCee
Confidence 67888888 789999999886631111111348999997776766788899999999998654
No 123
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=22.47 E-value=1.6e+02 Score=24.12 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=44.8
Q ss_pred hhCCCceecC-CCcceEEEEEcCCceEEEeecCCcEEEEecCChhHHHHHHHHHHHHHHhcCCC
Q psy16701 58 SRVRYSEYNP-GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 120 (272)
Q Consensus 58 ~~~~n~eY~P-~~f~~l~~R~~~P~~t~lIf~sGKiv~tGakS~~~a~~a~~k~~~~L~~lg~~ 120 (272)
..++.++-+| .+|.=+.+|+..|..+-.=+...|.++-|.+..+-=....+++.+.|+++|+.
T Consensus 26 ~~vP~V~Id~~G~fKYVLi~v~~~~~~~~~~~~~k~IVRG~~~a~YH~Diyd~~~~el~~~Gl~ 89 (144)
T 2hw4_A 26 ALIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCD 89 (144)
T ss_dssp GGSCSEEECCSEEEEEEEEEEECC--------CEEEEEEECTTCSSHHHHHHHHHHHHHHTTCE
T ss_pred ccCCeEEECCCCcEEEEEEEEEeCCCCCccccceeEEEEECCCchHHHHHHHHHHHHHHHcCCe
Confidence 4477889998 79999999988774222111134899999776666667788899999999873
No 124
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=22.35 E-value=93 Score=24.55 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=22.7
Q ss_pred ecCCeEEEEcccCHHHHHHHHHHHHHHHH
Q psy16701 176 FQSGKLLILGAKHEHDCKLASRKFAKILK 204 (272)
Q Consensus 176 F~SGKivitGakS~e~~~~A~~ki~~iL~ 204 (272)
+-+|+.++.|+ +.+++..+++.++...+
T Consensus 160 ving~~~~~g~-~~~~l~~~i~~~~~~~~ 187 (193)
T 2rem_A 160 VVNGRYMVTGH-DFEDTLRITDYLVSRER 187 (193)
T ss_dssp EETTTEEECCS-SHHHHHHHHHHHHHHHH
T ss_pred EECCEEEecCC-CHHHHHHHHHHHHHHHH
Confidence 34899988998 99999999888876543
No 125
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=22.09 E-value=77 Score=25.19 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=23.9
Q ss_pred ecCCeEEEEcccCHHHHHHHHHHHHHHHHh
Q psy16701 176 FQSGKLLILGAKHEHDCKLASRKFAKILKQ 205 (272)
Q Consensus 176 F~SGKivitGakS~e~~~~A~~ki~~iL~k 205 (272)
+-+|+.++.|+.+.+++..+++.++...++
T Consensus 155 ving~~~~~g~~~~~~l~~~i~~~l~~~~~ 184 (195)
T 2znm_A 155 IVGGKYRVIFNNGFDGGVHTIKELVAKVRE 184 (195)
T ss_dssp EETTTEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 338998889988889999998888776543
No 126
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=21.77 E-value=86 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=21.6
Q ss_pred EEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 83 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 83 t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
|+.+|++|+++ ..|..+.++....+++.
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 141 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQ 141 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHH
Confidence 78888999987 57888887777666655
No 127
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=21.74 E-value=1.1e+02 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=25.1
Q ss_pred eEEEeecCCcEEEE--ecCChhHHHHHHHHHHHHHHhc
Q psy16701 82 TTCLAFQSGKLLIL--GAKHEHDCKLASRKFAKILKQL 117 (272)
Q Consensus 82 ~t~lIf~sGKiv~t--GakS~~~a~~a~~k~~~~L~~l 117 (272)
++++| ++|+++-. |....++....++++.+.|+.+
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHh
Confidence 68889 99999865 4445566666777777777654
No 128
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=21.72 E-value=99 Score=23.53 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=25.8
Q ss_pred eEEEEecCCeEEE--EcccCHHHHHHHHHHHHHH
Q psy16701 171 TTCLAFQSGKLLI--LGAKHEHDCKLASRKFAKI 202 (272)
Q Consensus 171 ~t~lIF~SGKivi--tGakS~e~~~~A~~ki~~i 202 (272)
.+++|-++|+++- .|..+.+++.+.++++++.
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 165 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAA 165 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6889999999985 5777888888887777654
No 129
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=21.65 E-value=1e+02 Score=23.51 Aligned_cols=34 Identities=12% Similarity=0.000 Sum_probs=25.9
Q ss_pred eEEEeecCCcEE--EEecCChhHHHHHHHHHHHHHH
Q psy16701 82 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILK 115 (272)
Q Consensus 82 ~t~lIf~sGKiv--~tGakS~~~a~~a~~k~~~~L~ 115 (272)
++++|.++|+++ ..|..+.++....++++.+.++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 163 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 163 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 578888999997 4687788888777777765554
No 130
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=21.61 E-value=1.6e+02 Score=21.44 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=25.1
Q ss_pred CCceEEEeecCCcEEEEe-cCChhHHHH-HHHHHHHHHHhc
Q psy16701 79 NPRTTCLAFQSGKLLILG-AKHEHDCKL-ASRKFAKILKQL 117 (272)
Q Consensus 79 ~P~~t~lIf~sGKiv~tG-akS~~~a~~-a~~k~~~~L~~l 117 (272)
+|.-++.++-+|+ ..+| .+|..+|+. |++...+.|.++
T Consensus 46 ~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 46 RKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp SCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 4667777777887 6555 467888876 566666666543
No 131
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=21.60 E-value=95 Score=25.70 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=23.1
Q ss_pred eEEEEec-----CCeEEEEcccCHHHHHHHHHHHHHHHHh
Q psy16701 171 TTCLAFQ-----SGKLLILGAKHEHDCKLASRKFAKILKQ 205 (272)
Q Consensus 171 ~t~lIF~-----SGKivitGakS~e~~~~A~~ki~~iL~k 205 (272)
+.+++.+ +|+..+|| +..+++.+.+...|++
T Consensus 26 IEa~v~~~~~~g~g~~~~tG----~~~res~~~~~a~l~~ 61 (187)
T 1xhk_A 26 IIVQILESKNPGTHLLNISG----DIAKHSITLASALSKK 61 (187)
T ss_dssp EEEEEEECSSCEEEEESSCH----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCCCceEEec----HHHHHHHHHHHHHHhh
Confidence 3455555 38888888 7788888888888887
No 132
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=21.49 E-value=99 Score=20.38 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=17.8
Q ss_pred CCeEEEEcccCHHHHHHHHHHH
Q psy16701 178 SGKLLILGAKHEHDCKLASRKF 199 (272)
Q Consensus 178 SGKivitGakS~e~~~~A~~ki 199 (272)
+|++...|..+.+++.+.+++.
T Consensus 62 ~G~~~~~G~~~~~~l~~~l~~~ 83 (85)
T 1nho_A 62 NGVVRFVGAPSREELFEAINDE 83 (85)
T ss_dssp TTTEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH
Confidence 7888788988888888877654
No 133
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=21.36 E-value=1.5e+02 Score=23.56 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=28.0
Q ss_pred EEeecCCcEEEEecCCh----hHHHHHHHHHHHHHHhcCC
Q psy16701 84 CLAFQSGKLLILGAKHE----HDCKLASRKFAKILKQLGH 119 (272)
Q Consensus 84 ~lIf~sGKiv~tGakS~----~~a~~a~~k~~~~L~~lg~ 119 (272)
+.|.++++-++.|.-.+ .++..+++++++.|++.|+
T Consensus 100 v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 100 VTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp EEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 66667777777765543 4899999999999999875
No 134
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=21.18 E-value=1.1e+02 Score=24.13 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.7
Q ss_pred cEEEEecCChhHHHHHHHHHHHHHHhcCCC
Q psy16701 91 KLLILGAKHEHDCKLASRKFAKILKQLGHP 120 (272)
Q Consensus 91 Kiv~tGakS~~~a~~a~~k~~~~L~~lg~~ 120 (272)
=++||| +|..+.+..++.+.+.+++.|..
T Consensus 37 fVIatg-~S~rqv~Aiad~v~~~lk~~g~~ 65 (125)
T 2o5a_A 37 FLICHG-NSEKQVQAIAHELKKVAQEQGIE 65 (125)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEc-CCHHHHHHHHHHHHHHHHHcCCc
Confidence 367787 69999999999999999998864
No 135
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=21.01 E-value=1.1e+02 Score=22.26 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHhcC
Q psy16701 92 LLILGAKHEHDCKLASRKFAKILKQLG 118 (272)
Q Consensus 92 iv~tGakS~~~a~~a~~k~~~~L~~lg 118 (272)
+.++| +.+....|.+.+..++++.+
T Consensus 64 v~I~G--~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 64 LRITG--DPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp EEEEE--CTTTHHHHHHHHHHHHCCCS
T ss_pred EEEEe--CHHHHHHHHHHHHHHHhccC
Confidence 88888 77888888888888887653
No 136
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=20.82 E-value=59 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=17.6
Q ss_pred CCeEEEEcccCHHHHHHHHHHH
Q psy16701 178 SGKLLILGAKHEHDCKLASRKF 199 (272)
Q Consensus 178 SGKivitGakS~e~~~~A~~ki 199 (272)
+|++...|..+.+++++.+++.
T Consensus 63 ~G~~~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 63 NGDVEFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEeeecCCCHHHHHHHHHHh
Confidence 8888788988888888877653
No 137
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=20.79 E-value=1e+02 Score=22.01 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEecCCeEEE--EcccCHHHHHHHHHHH
Q psy16701 172 TCLAFQSGKLLI--LGAKHEHDCKLASRKF 199 (272)
Q Consensus 172 t~lIF~SGKivi--tGakS~e~~~~A~~ki 199 (272)
|+.+|.+|+++- .|. +.+++++.++++
T Consensus 80 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 80 TLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 566778888864 687 667777776654
No 138
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=20.61 E-value=93 Score=23.17 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=20.0
Q ss_pred EEEEe-cCCeEE-EEcccCHHHHHHHHHHHH
Q psy16701 172 TCLAF-QSGKLL-ILGAKHEHDCKLASRKFA 200 (272)
Q Consensus 172 t~lIF-~SGKiv-itGakS~e~~~~A~~ki~ 200 (272)
|+.+| .+|+++ ..|..+.+++.+.+++..
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKKAIDEFL 125 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 45566 778764 478888888777766554
No 139
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=20.48 E-value=1.1e+02 Score=23.77 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=21.2
Q ss_pred eEEEeecCCcEE--EEecCChhHHHHHHHHH
Q psy16701 82 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 110 (272)
Q Consensus 82 ~t~lIf~sGKiv--~tGakS~~~a~~a~~k~ 110 (272)
.|+.+|.+|+++ ..|..+.++....+++.
T Consensus 120 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 150 (155)
T 2ppt_A 120 PAFILFHKGRELARAAGARPASELVGFVRGK 150 (155)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHH
Confidence 367788999997 78888877666555543
No 140
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=20.30 E-value=1.1e+02 Score=25.40 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=25.7
Q ss_pred eEEEeecCCcEE-----------EEecCC-hhHHHHHHHHHHHHH
Q psy16701 82 TTCLAFQSGKLL-----------ILGAKH-EHDCKLASRKFAKIL 114 (272)
Q Consensus 82 ~t~lIf~sGKiv-----------~tGakS-~~~a~~a~~k~~~~L 114 (272)
.|+++|.+|+.+ .+|+.+ .++....++++.+--
T Consensus 97 PT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 97 VSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp EEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 688999999997 678877 777777777775544
No 141
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.13 E-value=1.3e+02 Score=24.00 Aligned_cols=31 Identities=6% Similarity=-0.106 Sum_probs=25.4
Q ss_pred eEEEeecCCcEEE--EecCChhHHHHHHHHHHH
Q psy16701 82 TTCLAFQSGKLLI--LGAKHEHDCKLASRKFAK 112 (272)
Q Consensus 82 ~t~lIf~sGKiv~--tGakS~~~a~~a~~k~~~ 112 (272)
.|+++|++|+.+- .|+.+.++....++++..
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l~ 123 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLA 123 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 4899999999975 599999888877776653
No 142
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=20.12 E-value=1.6e+02 Score=20.67 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.5
Q ss_pred CeEEEEcccCHHHHHHHHHHHHHHHHhC
Q psy16701 179 GKLLILGAKHEHDCKLASRKFAKILKQL 206 (272)
Q Consensus 179 GKivitGakS~e~~~~A~~ki~~iL~kl 206 (272)
+.|.|+| +.+.++.|.+.+..++++.
T Consensus 52 ~~v~I~G--~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 52 RIITITG--TQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp EEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEe--CHHHHHHHHHHHHHHHHhc
Confidence 5788999 4899999999999998876
No 143
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=20.05 E-value=1.2e+02 Score=23.79 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=44.2
Q ss_pred CCeEEcCCCcceEEEEEcCCeeEEEEecCCeEEE-EcccCHHHHHHHHHHHHHHHHhCC
Q psy16701 150 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI-LGAKHEHDCKLASRKFAKILKQLG 207 (272)
Q Consensus 150 ~n~eYePe~fpgli~R~~~p~~t~lIF~SGKivi-tGakS~e~~~~A~~ki~~iL~klg 207 (272)
..+..|-++++++.|.-. ..++..|+.+..+. ..-.|++||..=.+++.+.|+++.
T Consensus 57 ~~vi~n~~i~~~~~y~~~--~~~Fh~w~~~~~~~GL~F~se~eA~~F~~~~~~al~~~~ 113 (130)
T 1qc6_A 57 QQVVINYSIVKGLKYNQA--TPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMN 113 (130)
T ss_dssp CCEEEEEECCTTCEEEEE--ETTEEEEECSSCEEEEEESCHHHHHHHHHHHHHHHHHTC
T ss_pred CeEEEeeEEeCCcEEecc--CCeeEEEEcCCEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 457788888999988753 44588888887665 566799999999999999998873
Done!