RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16701
(272 letters)
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 99
Score = 110 bits (276), Expect = 2e-31
Identities = 45/99 (45%), Positives = 67/99 (67%)
Query: 119 HPEIIFFFFRNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 178
HP I +N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F S
Sbjct: 1 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 60
Query: 179 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 217
GK++ GAK E K+A+RK+A+I+++LG P K++ FKI
Sbjct: 61 GKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKI 99
Score = 96.4 bits (240), Expect = 4e-26
Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 11 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 70
Query: 100 EHDCKLASRKFAKILKQLGHPEIIFFFFR 128
E K+A+RK+A+I+++LG P F F+
Sbjct: 71 EDFSKMAARKYARIVQKLGFP-AKFKDFK 98
Score = 75.9 bits (187), Expect = 2e-18
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 216 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ NIV T ++ + L A+ + ++ + Y P+ F +I R+ +P+ LIF +G++
Sbjct: 8 TLQNIVSTVNLDCKLDLKAIA-LQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 63
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 92
Score = 96.0 bits (239), Expect = 4e-26
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK
Sbjct: 12 ENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLG 207
+ A ++ K LK+ G
Sbjct: 72 STDELIKAVKRIIKTLKKYG 91
Score = 95.6 bits (238), Expect = 6e-26
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK
Sbjct: 13 NIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG 118
+ A ++ K LK+ G
Sbjct: 73 TDELIKAVKRIIKTLKKYG 91
Score = 77.5 bits (191), Expect = 5e-19
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 215 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
I NIV T + + L A+ Y+P+ FPGLI+R+ P++ LIF +G++
Sbjct: 9 VNIENIVATVTLDQTLDLYAMER-SVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKM 65
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 92
Score = 95.1 bits (237), Expect = 8e-26
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 12 ENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAK 71
Query: 188 HEHDCKLASRKFAKILKQLG 207
D + A K A+ LK +G
Sbjct: 72 SVQDIERAVAKLAQKLKSIG 91
Score = 95.1 bits (237), Expect = 1e-25
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 13 NIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKS 72
Query: 100 EHDCKLASRKFAKILKQLG 118
D + A K A+ LK +G
Sbjct: 73 VQDIERAVAKLAQKLKSIG 91
Score = 80.9 bits (200), Expect = 3e-20
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 215 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+I NIV + D+ + L+ + S Y PE FPG+I + P+V LLIF +G++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLD-LCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKL 65
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 101
Score = 95.2 bits (237), Expect = 1e-25
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+N+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I GAK
Sbjct: 11 QNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAK 70
Query: 188 HEHDCKLASRKFAKILKQLG 207
E + A +K L +L
Sbjct: 71 REDEVHKAVKKIFDKLVELD 90
Score = 95.2 bits (237), Expect = 1e-25
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
N+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I GAK
Sbjct: 12 NIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKR 71
Query: 100 EHDCKLASRKFAKILKQLG 118
E + A +K L +L
Sbjct: 72 EDEVHKAVKKIFDKLVELD 90
Score = 82.1 bits (203), Expect = 1e-20
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 215 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+I NIV + ++ V LD + + YEPE FPGLIYRM +PRVVLLIF +G++
Sbjct: 8 IQIQNIVASANLHVIVNLDKAAF-LLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKM 64
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 89
Score = 92.5 bits (230), Expect = 8e-25
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 128 RNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
+NMV + +G +L+ + + EY P +F G+I ++ P++ L F SGK++ GAK
Sbjct: 11 QNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAK 70
Query: 188 HEHDCKLASRKFAKILKQ 205
E D A RK + L +
Sbjct: 71 SEADAWEAVRKLLRELDK 88
Score = 92.5 bits (230), Expect = 1e-24
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 40 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 99
NMV + +G +L+ + + EY P +F G+I ++ P++ L F SGK++ GAK
Sbjct: 12 NMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKS 71
Query: 100 EHDCKLASRKFAKILKQ 116
E D A RK + L +
Sbjct: 72 EADAWEAVRKLLRELDK 88
Score = 79.4 bits (196), Expect = 1e-19
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 215 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
+ N+V + D+ LD + YEPE FPG+IYR+ +P+ V+L+F +G+I
Sbjct: 8 IDVQNMVFSGDIGREFNLDVVAL-TLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKI 64
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 83
Score = 82.5 bits (204), Expect = 5e-21
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 40 NMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 98
N+VG+ V P+ L + +S Y P F GLI ++ P+ L F SGK++I GAK
Sbjct: 2 NIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 61
Query: 99 HEHDCKLASRKFAKILKQL 117
+ A +L +
Sbjct: 62 MRDETYKAFENIYPVLSEF 80
Score = 82.5 bits (204), Expect = 5e-21
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 129 NMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 187
N+VG+ V P+ L + +S Y P F GLI ++ P+ L F SGK++I GAK
Sbjct: 2 NIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 61
Query: 188 HEHDCKLASRKFAKILKQL 206
+ A +L +
Sbjct: 62 MRDETYKAFENIYPVLSEF 80
Score = 75.5 bits (186), Expect = 2e-18
Identities = 36/54 (66%), Positives = 47/54 (87%)
Query: 219 NIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 272
NIV +CDV+FP++L+ L + H+ FSSYEPELFPGLIYRM P++VLLIFV+G+I
Sbjct: 2 NIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKI 55
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 35.3 bits (81), Expect = 0.002
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 4 KRKNLKYGIGSACIGGGQACFCLI 27
KR+ + G+ + CIGGG I
Sbjct: 98 KRRGARKGLATLCIGGGMGVAMCI 121
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 34.6 bits (79), Expect = 0.003
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 4 KRKNLKYGIGSACIGGGQACFCLI 27
+R+ +++G+ + CIG GQ ++
Sbjct: 99 RRRKVQFGLATMCIGVGQGIAVVV 122
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 33.9 bits (77), Expect = 0.006
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 4 KRKNLKYGIGSACIGGGQACFCLI 27
K+ +G+ + CIG GQ +
Sbjct: 102 KQNGGTFGLSTMCIGLGQGIATVF 125
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 28.7 bits (64), Expect = 0.30
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 6 KNLKYGIGSACIGGGQA 22
K + G+ S CIG G
Sbjct: 100 KKDQIGVVSMCIGTGMG 116
>d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella
typhimurium [TaxId: 90371]}
Length = 427
Score = 27.7 bits (61), Expect = 1.5
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 8 LKYGIGSACIGGGQACFCLIRGGQKNRRG 36
+ GIG GG Q CF K R G
Sbjct: 7 ARSGIGWTGSGGEQQCFQATGAQSKYRLG 35
>d1ddla_ b.121.4.6 (A:) Tymovirus coat protein {DYMV (Desmodium
yellow mottle tymovirus) [TaxId: 70821]}
Length = 188
Score = 26.3 bits (58), Expect = 3.1
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 29 GGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYS 63
GG G ++N V I V +L +N ++ S
Sbjct: 112 GGLHFCIGGSVNSVKPIDV--EANLTNLNPIIKAS 144
>d1e57a_ b.121.4.6 (A:) Tymovirus coat protein {PHMV (Physalis
mottle virus) [TaxId: 72539]}
Length = 160
Score = 26.3 bits (58), Expect = 3.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 29 GGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYS 63
GGQ G ++ TI V PL+L+ +N ++ S
Sbjct: 85 GGQSFVLGGAISAAKTIEV--PLNLDSVNRMLKDS 117
>d1auya_ b.121.4.6 (A:) Tymovirus coat protein {TYMV (Turnip yellow
mosaic virus) [TaxId: 12154]}
Length = 163
Score = 25.9 bits (57), Expect = 4.4
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 29 GGQKNRRGTNLNMVGTISVGCPLDLNQINSRVRYS 63
GGQ G + + + V L + RV+ S
Sbjct: 86 GGQIFCIGGAIQTLSPLIV--KCPLEMMQPRVKDS 118
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF
{Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 25.2 bits (55), Expect = 7.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 34 RRGTNLNMVGTISVGCPLD 52
++ M GT S+GCP D
Sbjct: 63 NSEQHIVMNGTFSIGCPGD 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.144 0.447
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,029,683
Number of extensions: 47769
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 33
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.5 bits)