BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16704
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17
          Length = 292

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 32  VYSLLFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQ-QALSRYIDLSPAFQDT 90
           +YS L     K++  N L +++ K+YF K GLC L         + L       P F D+
Sbjct: 180 IYSKLI----KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235

Query: 91  REYKFLLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNED 144
           RE  FL  LI+++ E DS+  SE  KEFD+  RLD+W  T+L KIK  I   ED
Sbjct: 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQED 289


>pdb|3VB8|A Chain A, Crystal Structure Of Engineered Protein, Northeast
           Structural Genomics Consortium Target Or43
 pdb|3VB8|B Chain B, Crystal Structure Of Engineered Protein, Northeast
           Structural Genomics Consortium Target Or43
          Length = 161

 Score = 28.1 bits (61), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 3/29 (10%)

Query: 65  HLCIDL---LNCQQALSRYIDLSPAFQDT 90
           H+ ID+   LNC   L+++I++ P F+ T
Sbjct: 101 HIFIDIENDLNCPYVLAKFIEMRPEFEKT 129


>pdb|3II2|A Chain A, Structure Of Orf157 From Acidianus Filamentous Virus 1
 pdb|3II3|A Chain A, Structure Of Orf157 From Acidianus Filamentous Virus 1
          Length = 157

 Score = 27.7 bits (60), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 65  HLCIDL---LNCQQALSRYIDLSPAFQDT 90
           H+ ID+   LNC   L+++I++ P F  T
Sbjct: 97  HIFIDIENDLNCPYVLAKFIEMRPEFHKT 125


>pdb|3ILE|A Chain A, Crystal Structure Of Orf157-E86a Of Acidianus Filamentous
           Virus 1
          Length = 157

 Score = 27.3 bits (59), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 65  HLCIDL---LNCQQALSRYIDLSPAFQDT 90
           H+ ID+   LNC   L+++I++ P F  T
Sbjct: 97  HIFIDIENDLNCPYVLAKFIEMRPEFHKT 125


>pdb|3ILD|A Chain A, Structure Of Orf157-k57a From Acidianus Filamentous Virus
           1
          Length = 157

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 65  HLCIDL---LNCQQALSRYIDLSPAFQDT 90
           H+ ID+   LNC   L+++I++ P F  T
Sbjct: 97  HIFIDIENDLNCPYVLAKFIEMRPEFHKT 125


>pdb|1WNH|A Chain A, Crystal Structure Of Mouse Latexin (Tissue
           Carboxypeptidase Inhibitor)
          Length = 225

 Score = 26.2 bits (56), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 16/80 (20%)

Query: 81  IDLSPAFQDTREYKFLLKLIESLEEED-SDAFSETVKEFDSISRL--------------- 124
           I  +P  +D   Y+ L+ L   LE +D  D F     +   +  L               
Sbjct: 98  IGKNPDEEDNTFYQSLMSLKRPLEAQDIPDNFGNVSPQMKPVQHLAWVACGYVMWQNSTE 157

Query: 125 DQWYTTMLLKIKRQISTNED 144
           D WY  + ++  +Q+  N+D
Sbjct: 158 DTWYKMLKIQTVKQVQRNDD 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.139    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,491,577
Number of Sequences: 62578
Number of extensions: 123751
Number of successful extensions: 452
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)