BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16704
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q23983|SNAP_DROME Soluble NSF attachment protein OS=Drosophila melanogaster GN=Snap
PE=1 SV=1
Length = 292
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 84/111 (75%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
++ ++ E+SL+KY++KEYFF+A LCHL +DLLN Q A+ +Y PAFQD+RE+K
Sbjct: 182 IYEQVAASSLESSLLKYSAKEYFFRAALCHLSVDLLNAQHAIEKYAQQYPAFQDSREFKL 241
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNEDLR 146
+ L E+LEE++ + F+E VK++DSISRLDQWYTT+LL+IK+ + DLR
Sbjct: 242 IKVLCENLEEQNIEGFTEAVKDYDSISRLDQWYTTILLRIKKAADEDPDLR 292
>sp|P54921|SNAA_RAT Alpha-soluble NSF attachment protein OS=Rattus norvegicus GN=Napa
PE=1 SV=2
Length = 295
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 88/112 (78%), Gaps = 1/112 (0%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
++ G +A ++ L+KY++K+YFFKA LCH CID+LN + A+ +Y +L PAF D+RE K
Sbjct: 184 IYEQVGTSAMDSPLLKYSAKDYFFKAALCHFCIDMLNAKLAVQKYEELFPAFSDSRECKL 243
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTN-EDLR 146
+ KL+E+ EE++ D+++E+VKE+DSISRLDQW TTMLL+IK+ I + EDLR
Sbjct: 244 MKKLLEAHEEQNVDSYTESVKEYDSISRLDQWLTTMLLRIKKTIQGDEEDLR 295
>sp|Q9DB05|SNAA_MOUSE Alpha-soluble NSF attachment protein OS=Mus musculus GN=Napa PE=1
SV=1
Length = 295
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
++ G +A ++ L+KY++K+YFFKA LCH CID+LN + A+ +Y +L PAF D+RE K
Sbjct: 184 IYEQVGTSAMDSPLLKYSAKDYFFKAALCHFCIDMLNAKLAVQKYEELFPAFSDSRECKL 243
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTN-EDLR 146
+ KL+E+ EE++ D+++E VKE+DSISRLDQW TTMLL+IK+ I + EDLR
Sbjct: 244 MKKLLEAHEEQNVDSYTEAVKEYDSISRLDQWLTTMLLRIKKTIQGDEEDLR 295
>sp|P54920|SNAA_HUMAN Alpha-soluble NSF attachment protein OS=Homo sapiens GN=NAPA PE=1
SV=3
Length = 295
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
++ G A ++ L+KY++K+YFFKA LCH CID+LN + A+ +Y +L PAF D+RE K
Sbjct: 184 IYEQVGTNAMDSPLLKYSAKDYFFKAALCHFCIDMLNAKLAVQKYEELFPAFSDSRECKL 243
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTN-EDLR 146
+ KL+E+ EE++ D+++E+VKE+DSISRLDQW TTMLL+IK+ I + EDLR
Sbjct: 244 MKKLLEAHEEQNVDSYTESVKEYDSISRLDQWLTTMLLRIKKTIQGDEEDLR 295
>sp|P81125|SNAA_BOVIN Alpha-soluble NSF attachment protein OS=Bos taurus GN=NAPA PE=1
SV=1
Length = 295
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
++ G A ++ L+KY++K+YFFKA LCH CID+LN + A+ +Y +L PAF D+RE K
Sbjct: 184 IYEQVGTNAMDSPLLKYSAKDYFFKAALCHFCIDMLNAKLAVQKYEELFPAFSDSRECKR 243
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTN-EDLR 146
+ KL+E+ EE++ D+++E VKE+DSISRLDQW TTMLL+IK+ I + EDLR
Sbjct: 244 IKKLLEAHEEQNVDSYTEAVKEYDSISRLDQWLTTMLLRIKKTIQGDEEDLR 295
>sp|P81126|SNAB_BOVIN Beta-soluble NSF attachment protein OS=Bos taurus GN=NAPB PE=1 SV=1
Length = 298
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 80/107 (74%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
+F G +N L+KY++K+YFFKA LCH +D LN + AL +Y ++ PAF D+RE K
Sbjct: 184 IFEQIGANTMDNPLLKYSAKDYFFKAALCHFIVDELNAKLALEKYEEMFPAFTDSRECKL 243
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTN 142
L KL+E+ EE++S+A++E VKEFDSISRLDQW TTMLL+IK+ I +
Sbjct: 244 LKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWLTTMLLRIKKSIQGD 290
>sp|P85969|SNAB_RAT Beta-soluble NSF attachment protein OS=Rattus norvegicus GN=Napb
PE=1 SV=1
Length = 297
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 80/107 (74%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
++ G +N L+KY++K+YFFKA LCH +D LN + AL +Y ++ PAF D+RE K
Sbjct: 183 IYEQVGANTMDNPLLKYSAKDYFFKAALCHFIVDELNAKLALEKYEEMFPAFTDSRECKL 242
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTN 142
L KL+E+ EE++S+A++E VKEFDSISRLDQW TTMLL+IK+ I +
Sbjct: 243 LKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWLTTMLLRIKKSIQGD 289
>sp|P28663|SNAB_MOUSE Beta-soluble NSF attachment protein OS=Mus musculus GN=Napb PE=1
SV=2
Length = 298
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 80/107 (74%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
++ G +N L+KY++K+YFFKA LCH +D LN + AL +Y ++ PAF D+RE K
Sbjct: 184 IYEQVGANTMDNPLLKYSAKDYFFKAALCHFIVDELNAKLALEKYEEMFPAFTDSRECKL 243
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTN 142
L KL+E+ EE++S+A++E VKEFDSISRLDQW TTMLL+IK+ I +
Sbjct: 244 LKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWLTTMLLRIKKSIQGD 290
>sp|Q9H115|SNAB_HUMAN Beta-soluble NSF attachment protein OS=Homo sapiens GN=NAPB PE=1
SV=2
Length = 298
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 80/107 (74%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKF 95
++ G +N L+KY++K+YFFKA LCH +D LN + AL +Y ++ PAF D+RE K
Sbjct: 184 IYEQVGANTMDNPLLKYSAKDYFFKAALCHFIVDELNAKLALEKYEEMFPAFTDSRECKL 243
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTN 142
L KL+E+ EE++S+A++E VKEFDSISRLDQW TTMLL+IK+ I +
Sbjct: 244 LKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWLTTMLLRIKKSIQGD 290
>sp|Q9SPE6|SNAA2_ARATH Alpha-soluble NSF attachment protein 2 OS=Arabidopsis thaliana
GN=ASNAP2 PE=1 SV=1
Length = 289
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 47 NSLMKYNSKEYFFKAGLCHLC-IDLLNCQQALSRYIDLSPAFQDTREYKFLLKLIESLEE 105
N+L+KY K + AG+CHLC D+++ AL +Y DL P F TRE KFL L +++E
Sbjct: 185 NNLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFTGTRECKFLADLASAIDE 244
Query: 106 EDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNE 143
ED F++ VKEFDS++ LD W TTMLL++K ++ E
Sbjct: 245 EDIAKFTDVVKEFDSMTPLDSWKTTMLLRVKEKLKAKE 282
>sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein OS=Vitis vinifera PE=2 SV=1
Length = 289
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLC-IDLLNCQQALSRYIDLSPAFQDTREYK 94
++ G+ + N+L+KY K + AG+C LC D++ AL RY ++ P F TREYK
Sbjct: 174 IYEDIGRPSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALDRYQEMDPTFSGTREYK 233
Query: 95 FLLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNE 143
L+ L +++EED F++ VKEFDS+++LD W TT+LL++K I E
Sbjct: 234 LLVDLAAAVDEEDVVKFTDAVKEFDSMTQLDAWKTTLLLRVKEAIKAKE 282
>sp|Q9M5P8|SNAA_SOLTU Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1
Length = 288
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLC-IDLLNCQQALSRYIDLSPAFQDTREYK 94
+F + + N+L+KY +E+ AG+C LC D++ AL RY +L P F TRE K
Sbjct: 173 IFEEIARHSVNNNLLKYGVREHLLNAGICQLCKGDVVPINNALERYQELDPTFSGTRECK 232
Query: 95 FLLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNE 143
L+ L +++EED F++ VKE+DS+++LD W TT+LL++K + E
Sbjct: 233 LLVDLAAAIDEEDVAKFTDAVKEYDSMTQLDAWRTTLLLRVKETLKAKE 281
>sp|Q9P4X4|SEC17_SCHPO Probable vesicular-fusion protein sec17 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sec17 PE=1 SV=1
Length = 289
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 75/116 (64%), Gaps = 4/116 (3%)
Query: 33 YSLL---FYSTGKAATENSLMKYNSKEYFFKAGLCHLC-IDLLNCQQALSRYIDLSPAFQ 88
YSL F +A+ +N+L+K++ K+Y KAGLC++ D + ++AL ++++ P+F
Sbjct: 171 YSLAIRKFEQVARASVQNNLLKWSVKDYLLKAGLCYMANGDEIATRRALEHFLEIDPSFA 230
Query: 89 DTREYKFLLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNED 144
TREY+ L L +++E D++ F++ V +D +S+LD W TT+LLKIK I ED
Sbjct: 231 STREYQLLKDLQDTIEASDANMFADKVFTYDQLSKLDSWKTTILLKIKSSIQEAED 286
>sp|Q9P4D0|SEC17_PICPG Vesicular-fusion protein SEC17 OS=Komagataella pastoris (strain
GS115 / ATCC 20864) GN=SEC17 PE=3 SV=2
Length = 297
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 41 GKAATENSLMKYNSKEYFFKAGLCHLCI-DLLNCQQALSRYIDLSPAFQDTREYKFLLKL 99
K + NSL K++ K+YFFKA LC L + D + L R++ P F+ TREY+F LKL
Sbjct: 186 AKESLNNSLAKWSLKDYFFKAILCRLALNDYPSASALLERFVSWDPTFEKTREYEFALKL 245
Query: 100 IESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNEDL 145
++ L+E D D + E+D ISRLD + +L KIK I ++DL
Sbjct: 246 VDGLKEGDPDIIASASHEYDQISRLDNFKVKILNKIKNNIRDSDDL 291
>sp|Q9P6A5|SEC17_NEUCR Probable vesicular-fusion protein sec17 homolog OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=B1D1.150 PE=3 SV=1
Length = 292
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 37 FYSTGKAATENSLMKYNSKEYFFKAGLCHLCI-DLLNCQQALSRYIDLSPAFQDTREYKF 95
F +A+ N+LM+Y+ KEYF KAGLC L D++ Q+ +++Y + P+F REY+
Sbjct: 181 FEKVAEASLGNNLMRYSVKEYFLKAGLCSLATKDMVTAQRNITKYAEKDPSFTGQREYQL 240
Query: 96 LLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIK 136
L+ L+E+ + + F + + +D +SRLD W +LL+IK
Sbjct: 241 LVDLLEAASNNNLEMFQDKLAAYDKMSRLDDWKAAVLLQIK 281
>sp|Q54NP6|SNAA_DICDI Alpha-soluble NSF attachment protein OS=Dictyostelium discoideum
GN=snpA PE=1 SV=1
Length = 291
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 36 LFYSTGKAATENSLMKYNSKEYFFKAGLCHLCID-LLNCQQALSRYIDLSPAFQDTREYK 94
++ A+ +N+L ++ KEYF +A LC+L D ++ ++AL RY D+ +F TRE +
Sbjct: 179 IYEQVAAASLDNNLTQWGCKEYFLRACLCYLAADDVVGAERALQRYKDMQASFNSTRECR 238
Query: 95 FLLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQIS 140
L +I++ + + F+ V EF+SIS LD W T++LL+IK I+
Sbjct: 239 LLDGIIQACRNNNVEDFTNEVAEFNSISPLDSWKTSILLRIKNTIN 284
>sp|P78603|SEC17_COPC7 Vesicular-fusion protein SEC17 OS=Coprinopsis cinerea (strain
Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=SEC17
PE=3 SV=2
Length = 289
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 47 NSLMKYNSKEYFFKAGLCHLCI-DLLNCQQALSRYIDLSPAFQDTREYKFLLKLIESLEE 105
++L KY+ KEY+ K+ LC + + D++ ++ +YI F TRE+KF L+E+++
Sbjct: 189 SNLTKYSVKEYWLKSLLCTVALGDIVTARRNAQKYIGQDNTFVGTREFKFADALMEAVDA 248
Query: 106 EDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQI 139
D A++ V EFD I++LD W T +LLKIKR I
Sbjct: 249 GDVGAYTAAVVEFDRITKLDNWKTAILLKIKRGI 282
>sp|Q9LXZ5|SNAA1_ARATH Alpha-soluble NSF attachment protein 1 OS=Arabidopsis thaliana
GN=ASNAP1 PE=1 SV=1
Length = 381
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 39 STGKAATENSLMKYNSKEYFFKAGLCHLC-IDLLNCQQALSRYIDLSPAFQDTREYKFLL 97
+ + + N L+KY K + AG+CHLC D+++ AL +Y DL P F TRE KFL
Sbjct: 228 TQARHSLNNKLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFSGTRECKFLA 287
Query: 98 KLIESLEEEDSDAFSETVKEFDSISRL 124
L +++EED F++ KE DS+S L
Sbjct: 288 DLASAIDEEDIAKFTDVSKEIDSVSPL 314
>sp|P32602|SEC17_YEAST Alpha-soluble NSF attachment protein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SEC17 PE=1 SV=4
Length = 292
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 32 VYSLLFYSTGKAATENSLMKYNSKEYFFKAGLCHLCIDLLNCQ-QALSRYIDLSPAFQDT 90
+YS L K++ N L +++ K+YF K GLC L + L P F D+
Sbjct: 180 IYSKLI----KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235
Query: 91 REYKFLLKLIESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNED 144
RE FL LI+++ E DS+ SE KEFD+ RLD+W T+L KIK I ED
Sbjct: 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQED 289
>sp|Q75D68|SEC17_ASHGO Vesicular-fusion protein SEC17 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC17
PE=3 SV=1
Length = 291
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 47 NSLMKYNSKEYFFKAGLCHLCI-DLLNCQQALSRYIDLSPAFQDTREYKFLLKLIESLEE 105
N L +++ ++Y+ K LC L D + ++ L + +F +RE+ L +IE +++
Sbjct: 190 NRLSQWSLRDYYLKLCLCFLAASDTVAAEKTLQEALQEDSSFHGSREHDLLAAIIEDVKQ 249
Query: 106 EDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNED 144
D +AFS V EFD S+LD+W TT+LL++K I+ ED
Sbjct: 250 GDVEAFSNHVFEFDKFSKLDKWKTTVLLRVKTSITEVED 288
>sp|O90758|V033_FOWPN Soluble NSF attachment protein homolog FPV033 OS=Fowlpox virus
(strain NVSL) GN=SNAP PE=3 SV=1
Length = 287
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%)
Query: 49 LMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKFLLKLIESLEEEDS 108
++K+ K+ F KA LCH CI + + + Y +L F D REY ++K++ES + +
Sbjct: 194 ILKHRIKDQFLKAILCHFCIGDKDMRLIVGYYTELYAQFIDYREYTLIMKVVESCDTCNL 253
Query: 109 DAFSETVKEFDSISRLDQWYTTMLLKIKRQIST 141
D + ++E+ S++RLD T MLL+IK+ I T
Sbjct: 254 DILVDALREYGSVTRLDYILTIMLLEIKKNIQT 286
>sp|Q9J5J0|V011_FOWPN Soluble NSF attachment protein homolog FPV011 OS=Fowlpox virus
(strain NVSL) GN=FPV011 PE=3 SV=1
Length = 278
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 59/95 (62%)
Query: 49 LMKYNSKEYFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKFLLKLIESLEEEDS 108
L KY S+ A +C+LC D+ +++L +Y D+ PAF+D +E KF+ K++ + E ++
Sbjct: 182 LSKYESRHQLLYAIMCYLCSDVSRAKRSLDKYKDIFPAFKDFKECKFIEKILAACETKNI 241
Query: 109 DAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNE 143
+ F+ ++E+D + +D+ +MLL I++ +E
Sbjct: 242 ETFTSAIEEYDHGNTIDEALMSMLLTIRKATFEDE 276
>sp|Q820E9|MNMA_CHLCV tRNA-specific 2-thiouridylase MnmA OS=Chlamydophila caviae (strain
GPIC) GN=mnmA PE=3 SV=1
Length = 360
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 90 TREYKFLLKLIESLEEEDSDAFSETVKEFDSISRL 124
T YK + +++ EEEDSD T K+++ + R+
Sbjct: 25 TTPYKVIGLFMKNWEEEDSDGLCSTAKDYEDVERV 59
>sp|P48900|NU1M_FELCA NADH-ubiquinone oxidoreductase chain 1 OS=Felis catus GN=MT-ND1
PE=3 SV=1
Length = 318
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 9 MLIPMAMPFRLM-----LIFMLMMTFRIVYSLL---FYSTGKAATENSLMKY-NSKEYFF 59
M IP+ MP+ L+ ++FML M+ VYS+L + S K A +L + Y
Sbjct: 85 MWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEV 144
Query: 60 KAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYKFLL---------KLIESLEEEDSDA 110
+ L + L+N L+ I T+EY +L+ I +L E +
Sbjct: 145 TLAIILLSVLLMNGSFTLAMLI-------TTQEYMWLIIPAWPLAMMWFISTLAETNRAP 197
Query: 111 FSETVKEFDSISRLD 125
F T E + +S D
Sbjct: 198 FDLTEGESELVSGFD 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,828,845
Number of Sequences: 539616
Number of extensions: 1641709
Number of successful extensions: 6672
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6626
Number of HSP's gapped (non-prelim): 44
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)