RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16704
         (146 letters)



>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 290

 Score = 95.0 bits (235), Expect = 4e-25
 Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 41  GKAATENSLMKYNSKEYFFKAGLCHLCI-DLLNCQQALSRYIDLSPAFQDTREYKFLLKL 99
            K++  N L +++ K+YF K GLC L   D +   + L       P F D+RE  FL  L
Sbjct: 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL 244

Query: 100 IESLEEEDSDAFSETVKEFDSISRLDQWYTTMLLKIKRQISTNED 144
           I+++ E DS+  SE  KEFD+  RLD+W  T+L KIK  I   ED
Sbjct: 245 IDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQED 289


>d1r6fa_ e.46.1.1 (A:) Low calcium response locus protein V, LcrV
           {Yersinia pestis [TaxId: 632]}
          Length = 295

 Score = 26.4 bits (58), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 85  PAFQDTREYKFLLKLIESLEEED-SDAFSETVKEF 118
             F+ + EYK L K+ ++  + D S+    ++K+F
Sbjct: 178 EIFKASAEYKILEKMPQTTIQVDGSEKKIVSIKDF 212


>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core,
           domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 200

 Score = 24.9 bits (54), Expect = 4.5
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 18/72 (25%)

Query: 46  ENSLMKYNSKE-----YFFKAGLCHLCIDLLNCQQALSRYIDLSPAFQDTREYK-FLLKL 99
           + + ++          Y     L HLC +          ++  +    D  E K  +LK+
Sbjct: 136 DPTTLRGGDSLVPRNSYVR---LRHLCTNT---------WVHSTNIPIDKEEEKPVMLKI 183

Query: 100 IESLEEEDSDAF 111
             S  +ED +AF
Sbjct: 184 GTSPLKEDKEAF 195


>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex
           {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 156

 Score = 24.0 bits (52), Expect = 8.1
 Identities = 5/35 (14%), Positives = 15/35 (42%)

Query: 3   MVIFMLMLIPMAMPFRLMLIFMLMMTFRIVYSLLF 37
           +++  +    + +PF   +        R + ++LF
Sbjct: 96  LLMAAVPAGLITVPFIESINKFQNPYRRPIATILF 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 512,912
Number of extensions: 21932
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 20
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (22.9 bits)