Query psy16706
Match_columns 142
No_of_seqs 110 out of 802
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 19:56:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1411|consensus 100.0 1.9E-53 4E-58 358.5 10.1 135 1-142 271-405 (427)
2 COG1448 TyrB Aspartate/tyrosin 100.0 3.6E-52 7.9E-57 353.4 14.0 134 1-141 244-377 (396)
3 KOG1412|consensus 100.0 6.1E-51 1.3E-55 340.4 13.1 134 1-141 251-384 (410)
4 PLN02397 aspartate transaminas 99.9 2.1E-21 4.6E-26 166.2 15.1 134 1-141 267-400 (423)
5 PTZ00376 aspartate aminotransf 99.8 3.8E-19 8.2E-24 150.7 15.2 134 1-141 249-382 (404)
6 PRK09257 aromatic amino acid a 99.8 8.2E-19 1.8E-23 147.9 15.3 134 1-141 244-377 (396)
7 PRK08637 hypothetical protein; 99.2 3.4E-10 7.4E-15 95.4 13.9 124 2-135 226-355 (388)
8 PLN02607 1-aminocyclopropane-1 99.0 3.6E-09 7.8E-14 92.0 12.9 115 2-137 278-402 (447)
9 PF00155 Aminotran_1_2: Aminot 99.0 1.5E-09 3.2E-14 89.4 9.3 113 2-136 220-335 (363)
10 TIGR01264 tyr_amTase_E tyrosin 99.0 8.3E-09 1.8E-13 87.1 12.5 123 1-139 238-369 (401)
11 PRK06108 aspartate aminotransf 98.8 4.8E-08 1E-12 81.2 11.6 113 2-136 231-347 (382)
12 PRK08068 transaminase; Reviewe 98.8 7.6E-08 1.6E-12 81.0 12.3 113 1-136 238-354 (389)
13 PLN02450 1-aminocyclopropane-1 98.8 8.7E-08 1.9E-12 83.7 12.8 115 2-137 271-395 (468)
14 PRK05957 aspartate aminotransf 98.8 7.3E-08 1.6E-12 81.3 11.8 115 1-137 231-350 (389)
15 PRK08912 hypothetical protein; 98.7 1.8E-07 4E-12 78.5 12.0 113 2-138 231-351 (387)
16 COG0436 Aspartate/tyrosine/aro 98.7 1.4E-07 3E-12 81.2 11.3 118 1-137 234-356 (393)
17 PRK07550 hypothetical protein; 98.7 2.3E-07 5.1E-12 77.8 12.2 113 2-137 235-352 (386)
18 PRK07777 aminotransferase; Val 98.7 3.3E-07 7.2E-12 76.9 12.4 112 2-137 231-349 (387)
19 PRK09082 methionine aminotrans 98.7 1.4E-07 2.9E-12 79.5 9.9 115 1-138 234-354 (386)
20 PTZ00433 tyrosine aminotransfe 98.7 3.8E-07 8.1E-12 77.7 12.2 123 1-139 247-378 (412)
21 PLN02231 alanine transaminase 98.7 6.1E-07 1.3E-11 80.0 13.7 123 2-138 350-493 (534)
22 PLN02376 1-aminocyclopropane-1 98.6 6.7E-07 1.4E-11 79.0 12.9 117 1-138 277-404 (496)
23 PRK09148 aminotransferase; Val 98.6 4.1E-07 9E-12 77.4 11.2 114 2-138 237-357 (405)
24 PRK07682 hypothetical protein; 98.6 4.9E-07 1.1E-11 75.6 11.2 112 2-136 225-341 (378)
25 TIGR03540 DapC_direct LL-diami 98.6 1.1E-06 2.4E-11 73.6 12.5 114 1-137 235-352 (383)
26 PRK09276 LL-diaminopimelate am 98.6 9.6E-07 2.1E-11 74.0 11.8 112 2-136 238-353 (385)
27 PRK09105 putative aminotransfe 98.6 7.9E-07 1.7E-11 75.0 11.3 104 1-133 231-336 (370)
28 PTZ00377 alanine aminotransfer 98.6 1.5E-06 3.3E-11 75.8 13.0 123 2-139 298-442 (481)
29 PRK08636 aspartate aminotransf 98.5 1.5E-06 3.2E-11 73.8 12.5 112 2-137 247-366 (403)
30 PRK06348 aspartate aminotransf 98.5 1.3E-06 2.7E-11 73.6 11.9 116 1-138 232-352 (384)
31 PRK06836 aspartate aminotransf 98.5 8.2E-07 1.8E-11 75.1 10.7 114 2-138 243-360 (394)
32 PRK07681 aspartate aminotransf 98.5 1.7E-06 3.8E-11 73.1 12.3 112 2-136 238-353 (399)
33 PRK12414 putative aminotransfe 98.5 1.4E-06 3.1E-11 73.4 11.7 112 1-137 233-351 (384)
34 PRK08960 hypothetical protein; 98.5 1.5E-06 3.3E-11 73.1 11.7 114 1-136 232-351 (387)
35 PLN02368 alanine transaminase 98.5 1.4E-06 3.1E-11 75.1 11.7 108 2-123 290-404 (407)
36 PRK07865 N-succinyldiaminopime 98.5 2.3E-06 5.1E-11 71.3 12.4 110 2-136 222-333 (364)
37 PRK07683 aminotransferase A; V 98.5 2.5E-06 5.5E-11 71.9 12.2 114 2-138 232-350 (387)
38 PRK08175 aminotransferase; Val 98.5 2.4E-06 5.3E-11 72.1 12.0 113 1-137 235-355 (395)
39 PRK07337 aminotransferase; Val 98.5 1.8E-06 3.9E-11 72.5 11.1 116 1-138 230-355 (388)
40 PLN00175 aminotransferase fami 98.5 2.5E-06 5.3E-11 73.1 11.9 114 1-137 257-376 (413)
41 TIGR01140 L_thr_O3P_dcar L-thr 98.5 1.1E-06 2.3E-11 72.8 9.2 109 2-137 193-302 (330)
42 TIGR01265 tyr_nico_aTase tyros 98.5 3.5E-06 7.5E-11 71.5 12.5 122 2-138 240-370 (403)
43 PRK05764 aspartate aminotransf 98.5 3.4E-06 7.4E-11 70.6 12.3 114 2-137 237-359 (393)
44 PRK07568 aspartate aminotransf 98.4 4.4E-06 9.5E-11 70.1 12.2 114 1-136 233-354 (397)
45 PRK08361 aspartate aminotransf 98.4 2.8E-06 6.1E-11 71.6 11.1 116 2-137 236-356 (391)
46 TIGR03542 DAPAT_plant LL-diami 98.4 5E-06 1.1E-10 70.5 12.6 117 2-136 245-369 (402)
47 PRK07590 L,L-diaminopimelate a 98.4 6E-06 1.3E-10 70.1 12.7 119 1-137 247-377 (409)
48 PRK07366 succinyldiaminopimela 98.4 4.4E-06 9.6E-11 70.2 11.6 112 1-136 237-355 (388)
49 cd00609 AAT_like Aspartate ami 98.4 4.9E-06 1.1E-10 66.9 11.3 114 2-137 203-320 (350)
50 PRK08363 alanine aminotransfer 98.4 4.8E-06 1E-10 70.3 11.7 119 2-138 236-361 (398)
51 TIGR03539 DapC_actino succinyl 98.4 7.7E-06 1.7E-10 68.2 12.5 111 1-136 215-327 (357)
52 PRK05942 aspartate aminotransf 98.4 6.7E-06 1.5E-10 69.4 12.1 112 2-136 242-357 (394)
53 PRK06290 aspartate aminotransf 98.4 5.8E-06 1.3E-10 70.9 11.6 111 1-135 249-370 (410)
54 PRK07324 transaminase; Validat 98.3 8.6E-06 1.9E-10 68.6 12.1 116 1-138 220-339 (373)
55 PRK07309 aromatic amino acid a 98.3 6.7E-06 1.5E-10 69.5 11.2 114 1-137 235-354 (391)
56 PRK06855 aminotransferase; Val 98.3 1.2E-05 2.6E-10 69.3 12.9 124 1-138 241-396 (433)
57 PRK06107 aspartate aminotransf 98.3 8.9E-06 1.9E-10 69.0 11.3 114 2-137 240-368 (402)
58 PRK08056 threonine-phosphate d 98.3 6.1E-06 1.3E-10 68.8 10.1 108 2-135 211-320 (356)
59 PRK09265 aminotransferase AlaT 98.3 1.7E-05 3.8E-10 67.1 12.3 119 2-136 239-366 (404)
60 PRK15481 transcriptional regul 98.2 1.9E-05 4.1E-10 67.5 12.0 112 2-136 281-394 (431)
61 PLN00145 tyrosine/nicotianamin 98.2 3.8E-05 8.3E-10 66.3 13.5 121 1-137 260-392 (430)
62 PLN02656 tyrosine transaminase 98.2 3.4E-05 7.3E-10 65.8 12.6 117 1-137 239-371 (409)
63 TIGR03537 DapC succinyldiamino 98.2 3.2E-05 7E-10 64.2 12.2 110 2-136 205-318 (350)
64 PRK09440 avtA valine--pyruvate 98.2 3.3E-05 7.2E-10 65.5 12.5 116 2-136 248-369 (416)
65 PRK13355 bifunctional HTH-doma 98.2 2.7E-05 6E-10 68.6 12.2 121 2-137 352-480 (517)
66 PRK03158 histidinol-phosphate 98.2 2E-05 4.3E-10 65.4 10.6 107 2-136 221-329 (359)
67 PLN00143 tyrosine/nicotianamin 98.1 5.2E-05 1.1E-09 64.7 12.8 121 1-137 240-372 (409)
68 TIGR03538 DapC_gpp succinyldia 98.1 4.5E-05 9.7E-10 64.3 12.2 113 1-138 242-356 (393)
69 PRK06207 aspartate aminotransf 98.1 3.7E-05 8.1E-10 65.5 11.6 114 2-137 250-368 (405)
70 PRK05387 histidinol-phosphate 98.1 2.2E-05 4.7E-10 64.7 9.8 106 2-134 209-319 (353)
71 PRK07392 threonine-phosphate d 98.1 2.8E-05 6.2E-10 64.8 10.3 110 1-136 214-325 (360)
72 PLN03026 histidinol-phosphate 98.1 3.8E-05 8.3E-10 64.9 10.3 108 1-135 238-349 (380)
73 PRK03317 histidinol-phosphate 98.1 4.1E-05 9E-10 63.9 10.1 110 1-137 226-336 (368)
74 TIGR01141 hisC histidinol-phos 98.0 4.9E-05 1.1E-09 62.5 10.0 108 2-136 209-318 (346)
75 PRK02731 histidinol-phosphate 98.0 7.2E-05 1.6E-09 62.1 11.0 107 2-136 224-334 (367)
76 PLN02672 methionine S-methyltr 98.0 4.4E-05 9.5E-10 73.5 10.4 115 2-136 909-1047(1082)
77 PRK08153 histidinol-phosphate 98.0 9.6E-05 2.1E-09 62.1 11.2 106 1-134 221-331 (369)
78 PRK05166 histidinol-phosphate 98.0 9E-05 1.9E-09 62.1 10.9 109 1-136 229-339 (371)
79 PRK06358 threonine-phosphate d 98.0 8E-05 1.7E-09 62.2 10.3 112 1-138 211-323 (354)
80 PRK09147 succinyldiaminopimela 98.0 0.00015 3.2E-09 61.3 11.9 112 2-138 244-357 (396)
81 PRK06959 putative threonine-ph 98.0 0.00011 2.3E-09 61.4 11.0 105 1-134 196-301 (339)
82 PRK03967 histidinol-phosphate 98.0 4.3E-05 9.2E-10 63.5 8.4 101 1-135 202-302 (337)
83 PRK07908 hypothetical protein; 97.9 0.00014 3.1E-09 60.2 11.2 111 2-137 203-314 (349)
84 PRK04781 histidinol-phosphate 97.9 0.00016 3.5E-09 60.7 10.9 112 1-136 218-330 (364)
85 PLN02187 rooty/superroot1 97.9 0.0003 6.4E-09 61.5 12.8 121 2-137 275-406 (462)
86 PRK14808 histidinol-phosphate 97.9 0.00017 3.6E-09 60.0 10.7 106 1-134 200-308 (335)
87 PRK03321 putative aminotransfe 97.8 0.00018 3.9E-09 59.5 9.9 108 1-136 214-323 (352)
88 PRK04870 histidinol-phosphate 97.8 0.00012 2.7E-09 60.7 8.9 107 2-136 217-324 (356)
89 PRK05664 threonine-phosphate d 97.8 0.00037 8E-09 57.7 11.5 105 1-135 190-297 (330)
90 PRK14809 histidinol-phosphate 97.8 0.0003 6.6E-09 58.5 11.0 106 1-137 220-326 (357)
91 PRK14807 histidinol-phosphate 97.8 0.00023 5E-09 59.2 10.1 107 1-135 211-318 (351)
92 PRK01688 histidinol-phosphate 97.8 0.00012 2.6E-09 61.1 8.4 111 1-135 211-322 (351)
93 PRK05839 hypothetical protein; 97.8 0.00023 5E-09 59.9 10.0 107 1-136 230-337 (374)
94 PRK09275 aspartate aminotransf 97.8 0.00026 5.6E-09 63.6 10.5 59 74-137 405-483 (527)
95 PRK02610 histidinol-phosphate 97.7 0.00053 1.1E-08 57.6 11.4 108 1-135 232-343 (374)
96 PRK04635 histidinol-phosphate 97.7 0.00019 4.1E-09 59.8 8.6 108 2-134 213-321 (354)
97 KOG0256|consensus 97.7 0.0002 4.3E-09 62.9 8.9 94 2-116 302-395 (471)
98 PRK06425 histidinol-phosphate 97.7 0.00025 5.5E-09 58.6 9.2 108 1-136 191-299 (332)
99 TIGR03801 asp_4_decarbox aspar 97.7 0.00034 7.4E-09 62.7 10.2 59 74-137 404-482 (521)
100 PRK00950 histidinol-phosphate 97.7 0.00028 6E-09 58.4 9.0 104 1-135 221-327 (361)
101 PRK01533 histidinol-phosphate 97.6 0.00035 7.7E-09 58.9 8.7 107 1-135 220-327 (366)
102 PRK06225 aspartate aminotransf 97.4 0.0036 7.8E-08 52.5 12.1 111 2-135 224-339 (380)
103 PRK08354 putative aminotransfe 97.2 0.0033 7.1E-08 51.6 9.1 101 1-137 180-281 (311)
104 COG0079 HisC Histidinol-phosph 97.0 0.0072 1.6E-07 51.7 9.9 108 1-135 210-320 (356)
105 COG1167 ARO8 Transcriptional r 96.5 0.033 7.2E-07 48.9 10.8 111 15-138 304-418 (459)
106 PRK10534 L-threonine aldolase; 96.4 0.063 1.4E-06 43.9 11.0 50 82-137 253-305 (333)
107 TIGR00707 argD acetylornithine 96.1 0.034 7.3E-07 46.2 8.1 105 15-137 244-351 (379)
108 PRK13392 5-aminolevulinate syn 96.0 0.043 9.2E-07 46.6 8.4 55 77-135 301-358 (410)
109 PRK09064 5-aminolevulinate syn 96.0 0.074 1.6E-06 44.9 9.7 57 75-135 299-358 (407)
110 PRK04073 rocD ornithine--oxo-a 95.9 0.035 7.6E-07 47.0 7.6 112 2-137 254-367 (396)
111 cd00617 Tnase_like Tryptophana 95.9 0.046 9.9E-07 48.0 8.2 61 75-140 291-363 (431)
112 cd00378 SHMT Serine-glycine hy 95.7 0.22 4.7E-06 41.8 11.3 58 73-135 276-339 (402)
113 PRK05093 argD bifunctional N-s 95.7 0.036 7.7E-07 47.1 6.6 113 2-137 252-370 (403)
114 KOG0634|consensus 95.4 0.15 3.2E-06 45.4 9.7 119 14-140 299-429 (472)
115 cd06454 KBL_like KBL_like; thi 95.3 0.17 3.6E-06 41.2 9.3 57 74-135 252-312 (349)
116 TIGR00858 bioF 8-amino-7-oxono 95.2 0.34 7.4E-06 39.3 10.7 56 74-135 267-326 (360)
117 TIGR01821 5aminolev_synth 5-am 95.2 0.22 4.9E-06 42.0 9.8 56 76-135 299-357 (402)
118 PRK04260 acetylornithine amino 95.1 0.11 2.5E-06 43.5 7.9 113 2-137 233-347 (375)
119 PRK13238 tnaA tryptophanase/L- 95.0 0.12 2.7E-06 45.4 8.1 121 2-140 251-388 (460)
120 cd00610 OAT_like Acetyl ornith 94.7 0.099 2.1E-06 43.8 6.3 114 2-136 259-384 (413)
121 TIGR03576 pyridox_MJ0158 pyrid 94.6 0.43 9.3E-06 40.3 10.0 98 14-135 207-309 (346)
122 COG1168 MalY Bifunctional PLP- 94.4 0.91 2E-05 39.8 11.5 114 2-135 231-350 (388)
123 cd06502 TA_like Low-specificit 93.9 1.2 2.6E-05 36.0 11.0 110 2-137 195-311 (338)
124 PRK05958 8-amino-7-oxononanoat 93.7 0.58 1.3E-05 38.5 8.9 56 75-135 290-348 (385)
125 PLN02822 serine palmitoyltrans 93.6 0.41 9E-06 42.3 8.3 58 76-136 368-437 (481)
126 PRK00011 glyA serine hydroxyme 93.5 1.4 3E-05 37.4 11.0 57 73-134 280-342 (416)
127 PRK13393 5-aminolevulinate syn 93.4 0.75 1.6E-05 39.0 9.3 52 79-135 302-357 (406)
128 PRK02627 acetylornithine amino 93.3 0.34 7.5E-06 40.4 6.9 107 15-137 256-364 (396)
129 PRK02936 argD acetylornithine 93.1 0.57 1.2E-05 39.1 7.9 112 2-137 235-349 (377)
130 PLN02483 serine palmitoyltrans 93.0 0.35 7.6E-06 42.8 6.9 56 76-136 369-428 (489)
131 PRK06939 2-amino-3-ketobutyrat 92.9 0.51 1.1E-05 39.1 7.4 56 75-135 296-354 (397)
132 TIGR01825 gly_Cac_T_rel pyrido 92.9 0.65 1.4E-05 38.5 8.0 53 77-134 286-341 (385)
133 TIGR03301 PhnW-AepZ 2-aminoeth 92.3 3.4 7.3E-05 33.5 11.4 59 74-137 257-324 (355)
134 TIGR01979 sufS cysteine desulf 91.9 1.3 2.8E-05 37.1 8.7 58 74-135 293-357 (403)
135 PTZ00125 ornithine aminotransf 91.8 0.67 1.5E-05 38.9 6.9 113 2-137 246-365 (400)
136 TIGR01822 2am3keto_CoA 2-amino 91.2 1.3 2.9E-05 36.9 8.0 57 73-134 290-349 (393)
137 PRK03244 argD acetylornithine 91.0 0.9 2E-05 38.2 6.9 105 15-137 257-364 (398)
138 PRK02948 cysteine desulfurase; 90.8 0.45 9.8E-06 39.7 4.8 80 45-135 232-319 (381)
139 KOG0633|consensus 90.6 0.3 6.5E-06 41.5 3.6 78 2-99 226-303 (375)
140 COG3977 Alanine-alpha-ketoisov 90.2 2.5 5.4E-05 36.7 8.7 115 5-137 250-370 (417)
141 PRK12381 bifunctional succinyl 89.7 0.96 2.1E-05 38.6 6.0 112 2-137 251-369 (406)
142 PLN02721 threonine aldolase 89.6 8.3 0.00018 31.3 11.3 51 83-137 265-322 (353)
143 KOG0257|consensus 89.2 1.6 3.4E-05 38.7 7.0 101 2-117 244-344 (420)
144 TIGR03392 FeS_syn_CsdA cystein 88.2 4.6 0.0001 33.9 9.1 59 74-136 291-352 (398)
145 PRK01278 argD acetylornithine 88.2 2.3 5E-05 35.7 7.3 106 15-137 249-358 (389)
146 PRK00451 glycine dehydrogenase 87.4 2.8 6.1E-05 35.9 7.4 54 73-132 349-406 (447)
147 TIGR03812 tyr_de_CO2_Arch tyro 86.8 9 0.0002 31.5 9.9 61 72-136 284-344 (373)
148 cd06451 AGAT_like Alanine-glyo 86.6 16 0.00035 29.8 13.0 58 74-135 257-321 (356)
149 TIGR00713 hemL glutamate-1-sem 86.6 1.5 3.3E-05 37.3 5.3 113 2-137 262-394 (423)
150 TIGR01976 am_tr_V_VC1184 cyste 86.4 4.1 8.9E-05 34.0 7.7 58 73-134 291-355 (397)
151 PRK04612 argD acetylornithine 86.0 3.6 7.8E-05 35.5 7.4 113 2-138 255-374 (408)
152 PLN02242 methionine gamma-lyas 86.0 16 0.00036 31.7 11.5 108 2-130 222-347 (418)
153 TIGR01365 serC_2 phosphoserine 85.7 4.3 9.4E-05 35.0 7.7 78 3-96 185-283 (374)
154 TIGR01885 Orn_aminotrans ornit 84.5 3.8 8.3E-05 34.6 6.8 112 2-137 254-372 (401)
155 PRK07179 hypothetical protein; 83.6 5.1 0.00011 33.9 7.2 52 74-132 301-356 (407)
156 TIGR01366 serC_3 phosphoserine 83.6 23 0.0005 29.9 11.1 58 74-135 259-324 (361)
157 TIGR01977 am_tr_V_EF2568 cyste 83.3 14 0.00031 30.3 9.6 85 44-137 243-335 (376)
158 TIGR02539 SepCysS Sep-tRNA:Cys 83.0 10 0.00023 31.7 8.7 55 71-132 264-333 (370)
159 TIGR02407 ectoine_ectB diamino 82.9 2.4 5.2E-05 36.5 5.0 112 2-137 262-380 (412)
160 PRK06777 4-aminobutyrate amino 81.6 4.7 0.0001 34.8 6.3 113 2-137 266-389 (421)
161 PLN00144 acetylornithine trans 81.6 5.1 0.00011 34.1 6.4 105 15-138 241-350 (382)
162 PRK13580 serine hydroxymethylt 80.9 14 0.00031 33.3 9.2 55 76-135 339-399 (493)
163 PRK08088 4-aminobutyrate amino 80.6 7.9 0.00017 33.3 7.3 112 2-137 267-391 (425)
164 PRK00062 glutamate-1-semialdeh 80.0 5.3 0.00012 34.4 6.1 18 119-137 379-396 (426)
165 PTZ00094 serine hydroxymethylt 79.7 10 0.00022 32.9 7.8 60 72-136 299-364 (452)
166 PRK08247 cystathionine gamma-s 79.4 19 0.00042 30.3 9.2 44 80-128 253-299 (366)
167 TIGR03246 arg_catab_astC succi 79.1 7.8 0.00017 32.9 6.7 59 77-137 300-365 (397)
168 PRK00854 rocD ornithine--oxo-a 78.7 10 0.00022 31.9 7.3 104 16-137 263-371 (401)
169 cd06453 SufS_like Cysteine des 77.3 17 0.00038 29.9 8.1 58 74-135 273-335 (373)
170 PLN02624 ornithine-delta-amino 74.6 14 0.0003 32.6 7.2 18 119-137 397-414 (474)
171 PRK13520 L-tyrosine decarboxyl 74.0 18 0.00038 29.7 7.3 59 72-135 279-338 (371)
172 PLN02452 phosphoserine transam 73.5 11 0.00023 32.4 6.1 86 44-137 238-331 (365)
173 TIGR01328 met_gam_lyase methio 72.5 13 0.00029 31.7 6.5 26 2-35 204-229 (391)
174 COG4502 5'(3')-deoxyribonucleo 71.6 3.6 7.8E-05 32.0 2.5 71 65-135 16-90 (180)
175 PRK07269 cystathionine gamma-s 71.5 62 0.0014 27.4 10.7 106 2-131 196-302 (364)
176 PRK10874 cysteine sulfinate de 70.8 40 0.00088 28.2 8.9 57 75-135 295-354 (401)
177 TIGR03403 nifS_epsilon cystein 70.3 51 0.0011 27.4 9.4 58 74-135 257-320 (382)
178 PLN02409 serine--glyoxylate am 70.2 45 0.00098 28.3 9.2 59 73-135 270-336 (401)
179 PRK06460 hypothetical protein; 70.1 36 0.00078 28.9 8.5 20 76-95 242-261 (376)
180 TIGR00700 GABAtrnsam 4-aminobu 69.6 17 0.00036 31.3 6.5 110 2-137 265-388 (420)
181 COG1932 SerC Phosphoserine ami 69.1 27 0.00059 30.5 7.5 76 3-96 200-287 (365)
182 PF01297 TroA: Periplasmic sol 68.1 14 0.0003 29.4 5.3 75 56-131 107-200 (256)
183 PRK07582 cystathionine gamma-l 67.8 52 0.0011 27.8 9.0 110 2-133 192-316 (366)
184 PRK09264 diaminobutyrate--2-ox 67.1 17 0.00037 31.3 6.0 31 106-137 350-384 (425)
185 PRK13034 serine hydroxymethylt 66.7 56 0.0012 28.1 9.1 56 76-136 286-347 (416)
186 PRK06918 4-aminobutyrate amino 65.0 19 0.00042 31.3 6.0 64 2-83 287-353 (451)
187 KOG0258|consensus 64.1 94 0.002 28.0 9.9 115 14-137 302-437 (475)
188 PRK12462 phosphoserine aminotr 64.1 18 0.0004 31.2 5.6 47 43-96 235-285 (364)
189 TIGR02326 transamin_PhnW 2-ami 63.1 50 0.0011 27.2 7.9 58 74-136 262-328 (363)
190 PRK07049 methionine gamma-lyas 63.1 31 0.00067 30.0 6.9 107 2-133 240-366 (427)
191 TIGR03235 DNA_S_dndA cysteine 62.6 62 0.0013 26.5 8.3 61 70-136 255-321 (353)
192 PLN03227 serine palmitoyltrans 62.4 58 0.0012 27.8 8.3 17 120-137 325-341 (392)
193 PRK06767 methionine gamma-lyas 62.4 73 0.0016 27.0 9.0 16 2-23 206-221 (386)
194 PF00266 Aminotran_5: Aminotra 62.3 87 0.0019 25.9 9.2 78 48-135 252-337 (371)
195 TIGR01323 nitrile_alph nitrile 61.7 12 0.00026 29.7 3.6 22 48-69 32-53 (185)
196 PLN02855 Bifunctional selenocy 60.7 56 0.0012 27.7 7.9 59 73-134 306-373 (424)
197 cd06450 DOPA_deC_like DOPA dec 60.5 52 0.0011 26.6 7.5 60 72-134 244-311 (345)
198 PRK07504 O-succinylhomoserine 60.0 50 0.0011 28.3 7.6 20 2-28 210-229 (398)
199 PRK09331 Sep-tRNA:Cys-tRNA syn 59.4 55 0.0012 27.6 7.6 17 118-135 333-349 (387)
200 PF01031 Dynamin_M: Dynamin ce 58.7 74 0.0016 26.0 8.1 86 13-99 9-103 (295)
201 KOG3208|consensus 58.4 55 0.0012 26.9 7.1 63 27-89 56-120 (231)
202 cd06452 SepCysS Sep-tRNA:Cys-t 57.3 1.1E+02 0.0023 25.3 8.9 15 120-135 316-330 (361)
203 TIGR01557 myb_SHAQKYF myb-like 56.9 15 0.00033 23.5 2.9 40 85-129 11-53 (57)
204 PRK08360 4-aminobutyrate amino 56.1 29 0.00062 30.4 5.5 46 2-61 272-317 (443)
205 COG4531 ZnuA ABC-type Zn2+ tra 54.4 50 0.0011 28.2 6.4 45 54-98 165-210 (318)
206 PF11794 HpaB_N: 4-hydroxyphen 53.9 47 0.001 27.6 6.2 69 14-82 62-133 (264)
207 PRK09295 bifunctional cysteine 53.1 1.3E+02 0.0028 25.3 8.9 59 73-135 298-360 (406)
208 PRK07505 hypothetical protein; 52.9 60 0.0013 27.4 6.8 17 118-135 344-360 (402)
209 TIGR00709 dat 2,4-diaminobutyr 52.8 39 0.00084 29.4 5.8 112 2-137 274-403 (442)
210 PRK05769 4-aminobutyrate amino 52.0 41 0.00089 29.3 5.8 16 121-137 394-409 (441)
211 COG1578 Uncharacterized conser 51.5 1.1E+02 0.0024 25.9 8.0 68 16-83 14-87 (285)
212 PRK08117 4-aminobutyrate amino 51.0 56 0.0012 28.1 6.4 18 119-137 380-397 (433)
213 TIGR01814 kynureninase kynuren 50.2 1.2E+02 0.0026 25.6 8.2 60 74-135 307-374 (406)
214 PRK07495 4-aminobutyrate amino 49.6 61 0.0013 28.1 6.5 30 107-137 349-389 (425)
215 COG1104 NifS Cysteine sulfinat 49.5 80 0.0017 27.8 7.1 71 68-139 252-326 (386)
216 PF09066 B2-adapt-app_C: Beta2 49.4 15 0.00033 25.7 2.3 38 101-139 16-58 (114)
217 PRK00615 glutamate-1-semialdeh 48.9 40 0.00087 29.5 5.3 105 21-137 277-400 (433)
218 cd00613 GDC-P Glycine cleavage 48.7 57 0.0012 27.0 6.0 57 73-135 305-369 (398)
219 PF12592 DUF3763: Protein of u 48.0 17 0.00036 23.5 2.1 25 68-92 3-27 (57)
220 PF02341 RcbX: RbcX protein; 47.8 1.1E+02 0.0023 22.4 6.7 50 32-91 24-81 (111)
221 cd01248 PH_PLC Phospholipase C 47.3 22 0.00048 25.1 2.9 28 13-40 85-114 (115)
222 PRK07810 O-succinylhomoserine 45.7 1.2E+02 0.0026 26.1 7.7 50 2-62 215-264 (403)
223 PF11629 Mst1_SARAH: C termina 45.5 67 0.0015 20.3 4.4 29 65-93 19-47 (49)
224 PF03462 PCRF: PCRF domain; I 44.2 59 0.0013 23.3 4.7 32 62-93 7-38 (115)
225 PRK13479 2-aminoethylphosphona 44.0 1.8E+02 0.0039 23.8 11.9 57 74-135 263-328 (368)
226 COG0075 Serine-pyruvate aminot 43.8 2.3E+02 0.0049 24.9 9.7 89 37-135 229-327 (383)
227 PLN02482 glutamate-1-semialdeh 43.7 81 0.0017 28.0 6.4 17 120-137 429-445 (474)
228 PF02979 NHase_alpha: Nitrile 43.5 12 0.00026 29.9 1.0 22 49-70 39-60 (188)
229 PRK06541 hypothetical protein; 43.3 98 0.0021 27.2 6.8 55 78-136 348-422 (460)
230 PRK13415 flagella biosynthesis 42.5 1.9E+02 0.0041 23.6 8.8 69 26-99 141-217 (219)
231 PRK08593 4-aminobutyrate amino 42.4 86 0.0019 27.4 6.3 16 120-136 383-398 (445)
232 PLN03226 serine hydroxymethylt 41.7 2E+02 0.0044 25.5 8.6 58 74-136 312-375 (475)
233 COG3691 Uncharacterized protei 41.5 69 0.0015 22.9 4.6 36 15-50 28-63 (98)
234 TIGR01437 selA_rel uncharacter 40.4 91 0.002 26.2 6.0 20 115-134 311-331 (363)
235 PLN00122 serine/threonine prot 40.3 1E+02 0.0022 24.0 5.8 54 30-83 92-147 (170)
236 COG0156 BioF 7-keto-8-aminopel 40.3 2.5E+02 0.0054 24.6 8.8 17 118-135 335-351 (388)
237 PF15500 Toxin_39: Putative RN 39.3 27 0.00058 24.8 2.2 37 45-82 27-65 (96)
238 PF06290 PsiB: Plasmid SOS inh 39.2 18 0.00039 27.6 1.4 77 59-141 3-85 (143)
239 PF09019 EcoRII-C: EcoRII C te 38.7 22 0.00048 27.7 1.8 42 64-134 96-140 (164)
240 PF04201 TPD52: Tumour protein 38.6 61 0.0013 25.3 4.2 29 64-92 28-56 (162)
241 PF03281 Mab-21: Mab-21 protei 38.1 1.7E+02 0.0038 23.6 7.1 87 33-127 195-285 (292)
242 PLN00060 meiotic recombination 37.7 38 0.00083 29.7 3.4 31 53-83 326-356 (384)
243 TIGR03531 selenium_SpcS O-phos 37.6 1.4E+02 0.003 26.5 6.9 73 20-104 281-353 (444)
244 cd01040 globin Globins are hem 36.9 1.4E+02 0.003 20.5 7.4 38 47-84 17-67 (140)
245 TIGR03402 FeS_nifS cysteine de 36.9 2E+02 0.0043 23.8 7.4 59 74-135 253-317 (379)
246 smart00742 Hr1 Rho effector or 36.9 1.1E+02 0.0023 19.1 5.2 37 52-88 18-55 (57)
247 PF10454 DUF2458: Protein of u 36.7 1.9E+02 0.0041 22.0 7.3 69 28-97 2-73 (150)
248 PF08565 CDC37_M: Cdc37 Hsp90 36.6 2E+02 0.0044 22.3 7.7 51 38-89 113-165 (173)
249 TIGR00743 conserved hypothetic 36.3 94 0.002 22.1 4.6 37 15-51 25-61 (95)
250 cd00186 TOP1Ac DNA Topoisomera 35.9 41 0.00089 28.9 3.3 35 48-82 324-364 (381)
251 PRK08133 O-succinylhomoserine 35.5 2.2E+02 0.0047 24.3 7.6 26 2-35 206-231 (390)
252 PRK06058 4-aminobutyrate amino 34.3 1.2E+02 0.0025 26.4 5.9 105 15-137 293-410 (443)
253 PF07959 Fucokinase: L-fucokin 34.0 79 0.0017 27.7 4.8 45 79-128 211-255 (414)
254 KOG0033|consensus 32.3 73 0.0016 27.3 4.0 48 45-94 235-291 (355)
255 PRK13701 psiB plasmid SOS inhi 31.9 51 0.0011 25.2 2.8 76 60-141 4-85 (144)
256 COG0520 csdA Selenocysteine ly 31.8 2E+02 0.0044 25.0 6.9 59 74-136 298-362 (405)
257 PRK13430 F0F1 ATP synthase sub 31.6 1.3E+02 0.0029 24.7 5.5 49 35-83 78-133 (271)
258 PRK14724 DNA topoisomerase III 31.6 56 0.0012 32.0 3.7 32 48-79 566-604 (987)
259 PRK05937 8-amino-7-oxononanoat 31.4 1.5E+02 0.0032 24.7 5.8 50 76-134 265-314 (370)
260 KOG4623|consensus 31.0 63 0.0014 29.8 3.7 34 52-85 109-144 (611)
261 PF03923 Lipoprotein_16: Uncha 30.4 78 0.0017 23.7 3.7 45 1-68 112-156 (159)
262 PRK06234 methionine gamma-lyas 30.2 2.8E+02 0.0061 23.7 7.5 25 2-34 211-235 (400)
263 cd07321 Extradiol_Dioxygenase_ 30.0 1.3E+02 0.0028 20.2 4.3 27 54-80 6-32 (77)
264 cd00616 AHBA_syn 3-amino-5-hyd 30.0 2.1E+02 0.0045 23.1 6.3 57 74-134 230-297 (352)
265 PF03993 DUF349: Domain of Unk 29.9 1.5E+02 0.0032 18.9 4.5 35 67-101 18-52 (77)
266 TIGR01057 topA_arch DNA topois 29.8 57 0.0012 30.0 3.3 32 48-79 508-545 (618)
267 PF05082 Rop-like: Rop-like; 29.7 1.5E+02 0.0034 19.7 4.5 36 69-106 6-41 (66)
268 PRK11546 zraP zinc resistance 29.5 1.7E+02 0.0038 22.2 5.4 35 64-98 88-122 (143)
269 PF06034 DUF919: Nucleopolyhed 29.3 85 0.0018 20.6 3.2 29 56-91 29-57 (62)
270 PF08544 GHMP_kinases_C: GHMP 28.9 1.1E+02 0.0023 19.6 3.7 22 19-40 60-81 (85)
271 PF03592 Terminase_2: Terminas 28.5 1.1E+02 0.0025 22.2 4.2 56 38-95 19-74 (144)
272 PF06070 Herpes_UL32: Herpesvi 28.4 90 0.0019 30.3 4.4 110 20-135 152-279 (839)
273 COG0331 FabD (acyl-carrier-pro 28.4 79 0.0017 26.8 3.7 36 84-130 117-152 (310)
274 PRK09792 4-aminobutyrate trans 28.0 2E+02 0.0044 24.7 6.3 104 15-137 272-389 (421)
275 PF00464 SHMT: Serine hydroxym 28.0 3.2E+02 0.0068 24.1 7.5 63 71-135 295-360 (399)
276 PRK08776 cystathionine gamma-s 27.9 3.9E+02 0.0085 23.0 8.2 108 2-131 205-328 (405)
277 TIGR02764 spore_ybaN_pdaB poly 27.8 17 0.00036 27.6 -0.5 63 4-83 30-92 (191)
278 PRK06148 hypothetical protein; 27.2 1.8E+02 0.0039 28.5 6.3 32 105-137 935-978 (1013)
279 PRK05582 DNA topoisomerase I; 27.2 70 0.0015 29.6 3.4 32 47-78 495-532 (650)
280 PRK06149 hypothetical protein; 27.1 1.9E+02 0.0041 28.1 6.4 34 104-138 894-939 (972)
281 KOG4010|consensus 26.9 2E+02 0.0044 23.2 5.5 41 50-90 29-69 (208)
282 COG1103 Archaea-specific pyrid 26.2 3.5E+02 0.0075 23.5 7.1 31 49-79 257-290 (382)
283 TIGR01051 topA_bact DNA topois 26.1 74 0.0016 29.3 3.3 33 47-79 501-539 (610)
284 PF06992 Phage_lambda_P: Repli 26.0 51 0.0011 27.1 2.1 23 61-83 169-191 (233)
285 PRK08173 DNA topoisomerase III 26.0 72 0.0016 30.8 3.3 33 47-79 546-585 (862)
286 PHA00415 25 baseplate wedge su 25.7 1.2E+02 0.0026 22.4 3.9 51 16-67 19-71 (131)
287 PRK03080 phosphoserine aminotr 25.5 3.6E+02 0.0079 22.6 7.3 23 74-96 270-292 (378)
288 PF07544 Med9: RNA polymerase 25.5 1.3E+02 0.0029 20.3 3.8 26 67-93 54-79 (83)
289 PF02787 CPSase_L_D3: Carbamoy 25.4 1.1E+02 0.0023 22.4 3.5 37 87-132 63-99 (123)
290 PF07058 Myosin_HC-like: Myosi 25.4 84 0.0018 27.2 3.3 22 68-89 111-132 (351)
291 TIGR03499 FlhF flagellar biosy 24.9 3.8E+02 0.0083 21.8 8.6 86 30-116 112-202 (282)
292 PF07027 DUF1318: Protein of u 24.8 1.8E+02 0.0038 20.5 4.4 23 72-94 36-58 (95)
293 PF06013 WXG100: Proteins of 1 24.8 1.8E+02 0.0039 18.0 8.5 53 30-92 26-78 (86)
294 cd00614 CGS_like CGS_like: Cys 24.6 4.2E+02 0.009 22.1 10.6 108 2-132 185-309 (369)
295 PF11957 efThoc1: THO complex 24.5 1.2E+02 0.0025 27.1 4.2 45 28-73 290-334 (491)
296 PF12411 Choline_sulf_C: Choli 24.2 1.2E+02 0.0026 19.3 3.2 40 83-123 9-50 (54)
297 TIGR00153 conserved hypothetic 24.1 2.9E+02 0.0063 21.5 6.1 43 67-126 45-87 (216)
298 cd08642 DNA_pol_A_pol_I_A Poly 24.0 59 0.0013 28.4 2.2 67 7-73 97-201 (378)
299 smart00638 LPD_N Lipoprotein N 24.0 1.7E+02 0.0037 26.1 5.2 91 14-106 258-364 (574)
300 PRK06599 DNA topoisomerase I; 23.7 88 0.0019 29.1 3.4 32 47-78 509-546 (675)
301 PLN02256 arogenate dehydrogena 23.7 2.2E+02 0.0049 23.7 5.6 40 53-92 239-290 (304)
302 PF09756 DDRGK: DDRGK domain; 23.1 53 0.0011 26.0 1.6 36 99-141 141-176 (188)
303 PF11859 DUF3379: Protein of u 22.9 1.9E+02 0.0041 23.8 4.8 40 43-83 8-47 (232)
304 PRK07219 DNA topoisomerase I; 22.9 89 0.0019 29.9 3.3 33 47-79 516-554 (822)
305 PRK13428 F0F1 ATP synthase sub 22.8 1.7E+02 0.0037 25.8 4.9 49 35-83 250-305 (445)
306 PRK07811 cystathionine gamma-s 22.5 4.8E+02 0.01 22.1 7.9 26 2-34 206-231 (388)
307 cd01018 ZntC Metal binding pro 22.5 2.4E+02 0.0052 22.6 5.4 39 57-95 128-168 (266)
308 PRK09221 beta alanine--pyruvat 22.5 3.8E+02 0.0082 23.4 7.0 30 107-137 376-414 (445)
309 PRK05964 adenosylmethionine--8 22.3 3.7E+02 0.008 23.0 6.8 30 107-137 357-393 (423)
310 PF11172 DUF2959: Protein of u 22.3 1.1E+02 0.0024 24.6 3.3 17 64-80 95-111 (201)
311 PHA00442 host recBCD nuclease 22.2 1.7E+02 0.0037 19.0 3.5 37 67-106 12-48 (59)
312 KOG1403|consensus 22.2 5.4E+02 0.012 22.7 7.6 101 22-137 288-405 (452)
313 COG0076 GadB Glutamate decarbo 22.2 1.3E+02 0.0028 26.9 4.0 88 17-107 281-370 (460)
314 PRK08654 pyruvate carboxylase 22.2 2.5E+02 0.0054 25.1 5.9 65 14-83 381-452 (499)
315 PF15200 KRTDAP: Keratinocyte 22.1 70 0.0015 21.9 1.8 31 85-115 44-74 (77)
316 PRK11627 hypothetical protein; 22.0 1.3E+02 0.0028 23.7 3.6 45 1-68 141-185 (192)
317 PF10168 Nup88: Nuclear pore c 22.0 1E+02 0.0023 29.1 3.6 54 68-123 635-689 (717)
318 PRK08249 cystathionine gamma-s 21.7 3.9E+02 0.0085 22.9 6.8 26 2-35 209-234 (398)
319 PRK11020 hypothetical protein; 21.7 2E+02 0.0044 21.3 4.3 58 28-96 4-62 (118)
320 PF08776 VASP_tetra: VASP tetr 21.6 2E+02 0.0043 17.4 4.3 20 74-93 13-32 (40)
321 cd01145 TroA_c Periplasmic bin 21.5 2.7E+02 0.0058 21.4 5.3 33 63-95 132-164 (203)
322 cd01137 PsaA Metal binding pro 21.4 2E+02 0.0042 23.6 4.7 49 63-111 141-197 (287)
323 PF08232 Striatin: Striatin fa 21.3 1.1E+02 0.0023 22.8 2.9 21 64-84 17-37 (134)
324 PRK08462 biotin carboxylase; V 21.3 1.8E+02 0.004 25.0 4.8 52 14-68 382-433 (445)
325 PRK14973 DNA topoisomerase I; 21.1 1E+02 0.0022 30.2 3.4 34 47-80 506-545 (936)
326 smart00352 POU Found in Pit-Oc 20.9 1.1E+02 0.0024 20.8 2.6 18 71-88 6-23 (75)
327 PRK06266 transcription initiat 20.8 4E+02 0.0087 20.6 6.2 83 34-125 10-94 (178)
328 COG3682 Predicted transcriptio 20.8 3.5E+02 0.0076 20.1 5.5 65 41-123 11-76 (123)
329 KOG0568|consensus 20.7 1.3E+02 0.0027 25.4 3.4 43 55-97 243-285 (342)
330 PF10303 DUF2408: Protein of u 20.6 3.6E+02 0.0078 20.0 7.2 46 27-75 39-94 (134)
331 PRK05686 fliG flagellar motor 20.6 4.6E+02 0.01 22.1 6.9 50 27-76 175-228 (339)
332 PRK08591 acetyl-CoA carboxylas 20.5 2E+02 0.0042 24.8 4.7 52 14-68 382-433 (451)
333 PF05144 Phage_CRI: Phage repl 20.2 2.1E+02 0.0045 23.9 4.6 78 20-109 189-267 (271)
No 1
>KOG1411|consensus
Probab=100.00 E-value=1.9e-53 Score=358.53 Aligned_cols=135 Identities=61% Similarity=0.952 Sum_probs=133.2
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
|+||||| |||||||++|||+|++++.+|+||++.++|++|||||.|||+||++||+||+|+++|..|++.|.+|
T Consensus 271 yAKNMGL------YgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadR 344 (427)
T KOG1411|consen 271 YAKNMGL------YGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADR 344 (427)
T ss_pred hhhhcch------hhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHh
Confidence 6899999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeeeCCCcccCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNVEKCSQE 142 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~Gri~~~ 142 (142)
|+.||+.|++.|++.+++++|+||++|.||||||||+|+||+. |+++|||||+.|||||+.
T Consensus 345 i~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~peQv~~-l~ke~~iYmT~dGRiS~a 405 (427)
T KOG1411|consen 345 IISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNPEQVDW-LTKEYHIYLTKDGRISMA 405 (427)
T ss_pred hhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCHHHHHH-HHhhheeeeccCceEeec
Confidence 9999999999999999999999999999999999999999999 999999999999999973
No 2
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-52 Score=353.45 Aligned_cols=134 Identities=45% Similarity=0.760 Sum_probs=132.7
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.|||||| |||||||+++|++|++.++++.|||+.++|++|||||.|||+||++||+||+||++|++||++|++|
T Consensus 244 ~SKnfgL------YgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~R 317 (396)
T COG1448 244 FSKNFGL------YGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQR 317 (396)
T ss_pred hhhhhhh------hhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeeeCCCcccC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNVEKCSQ 141 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~Gri~~ 141 (142)
|.+||+.|+++|++.+.+++|+||++|+|||+|+||+++||++ ||++|+||++.+||||+
T Consensus 318 i~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~r-Lree~~IY~v~sGRi~v 377 (396)
T COG1448 318 ILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVDR-LREEFGIYLVASGRINV 377 (396)
T ss_pred HHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCHHHHHH-HHHhccEEEecCCeeee
Confidence 9999999999999999999999999999999999999999999 99999999999999997
No 3
>KOG1412|consensus
Probab=100.00 E-value=6.1e-51 Score=340.37 Aligned_cols=134 Identities=40% Similarity=0.707 Sum_probs=132.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.+||||| ||||||+|++|.+|+..+..|.|||..++|++|||||++||+||++||++|+|++||.+.++.|+.|
T Consensus 251 FaKNfGl------YneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssR 324 (410)
T KOG1412|consen 251 FAKNFGL------YNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSR 324 (410)
T ss_pred hhhhccc------ccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3799999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeeeCCCcccC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNVEKCSQ 141 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~Gri~~ 141 (142)
|++||.+|.+.|.+++|||+||||++|.||||||||+|.||+. |.++|+||++++||||+
T Consensus 325 I~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp~qV~~-li~~h~vyLl~~GRIni 384 (410)
T KOG1412|consen 325 IKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTPAQVDH-LIENHKVYLLSDGRINI 384 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCHHHHHH-HHHhceEEEecCCcEee
Confidence 9999999999999999999999999999999999999999999 99999999999999996
No 4
>PLN02397 aspartate transaminase
Probab=99.87 E-value=2.1e-21 Score=166.21 Aligned_cols=134 Identities=54% Similarity=0.863 Sum_probs=126.2
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||+||+ +|.|+|.+++++.+++.++.+.+++..+.+.+|+++|.+++.++..+|+++++.++|.++++.|+++
T Consensus 267 fSK~~~~------~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~ 340 (423)
T PLN02397 267 YAKNMGL------YGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADR 340 (423)
T ss_pred CcccCCC------ccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3999999 9999999999888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeeeCCCcccC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNVEKCSQ 141 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~Gri~~ 141 (142)
+++.|+.+++.|++.+.++.|+++..|.|||.++.++.+++++ |.++++||++++||||.
T Consensus 341 ~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~~~~~~-Ll~~~~V~v~~~~Ri~~ 400 (423)
T PLN02397 341 IISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNKEQVDR-MTKEYHIYMTRDGRISM 400 (423)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCCHHHHHH-HHHhCCEEECCCCeEEE
Confidence 9999999999999988777899999999999999999888877 99999999999999985
No 5
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.82 E-value=3.8e-19 Score=150.69 Aligned_cols=134 Identities=53% Similarity=0.869 Sum_probs=125.0
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||+||+ .|.|+|.+++++.+++.++++.+++....+..|+++|..++.++..+|+++++..+|.++++.++++
T Consensus 249 fSK~~~~------~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 322 (404)
T PTZ00376 249 FSKNMGL------YGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGR 322 (404)
T ss_pred CCCcccc------cccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3999999 9999999999888999989999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeeeCCCcccC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNVEKCSQ 141 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~Gri~~ 141 (142)
+++.|+.+.++|++.+.++.|.++..+.|||.++.++.+.+++ |.++++|+++|.|||+.
T Consensus 323 ~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~~~~~~-L~~~~~v~v~p~~Ris~ 382 (404)
T PTZ00376 323 IQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTKEQVER-LIEKYHIYLLDNGRISV 382 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCCHHHHHH-HHHhCCEeecCCCeEEE
Confidence 9999999999999988776799888999999999999888887 98999999999999985
No 6
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.81 E-value=8.2e-19 Score=147.89 Aligned_cols=134 Identities=44% Similarity=0.738 Sum_probs=124.6
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||+|++ +|.|+|.+++++++++....+.++++...|..|++||...+.+++.+|.++++...|.++++.++++
T Consensus 244 fSK~~~~------~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 317 (396)
T PRK09257 244 FSKNFGL------YGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRER 317 (396)
T ss_pred cCCcCcc------ccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3999999 9999999999888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeeeCCCcccC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNVEKCSQ 141 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~Gri~~ 141 (142)
+++.|+.+.+.|++.+.++.|.+...+.|||+++.++.+++.+ |.++++|+++++|||+.
T Consensus 318 ~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~~~~~~-l~~~~~V~~~p~~ri~~ 377 (396)
T PRK09257 318 IKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTPEQVDR-LREEFGVYAVGSGRINV 377 (396)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCHHHHHH-HHHcCCEEEcCCCeEEE
Confidence 9999999999999987655688889999999999999889888 88999999999999974
No 7
>PRK08637 hypothetical protein; Provisional
Probab=99.22 E-value=3.4e-10 Score=95.45 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=97.7
Q ss_pred CcccccccCCCCcccccceeEEEe---CCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVS---ADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMA 78 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~---~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~ 78 (142)
||.|++ .|.|+|.+++.. .+++..+.+...+....+.+++++|...+.++..+|++++ |.++++.++
T Consensus 226 SK~~~~------pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~----~~~~~~~~~ 295 (388)
T PRK08637 226 TKEEFV------WGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPE----FDKEKQEKF 295 (388)
T ss_pred cccCCC------cccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHH----HHHHHHHHH
Confidence 899999 999999998754 5677777877666666777788899999999999999864 666777777
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC---HHHHHHHhhhccceeeeC
Q psy16706 79 DRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---ATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 79 ~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~---~~qv~~~L~~~~~Iyl~~ 135 (142)
..+++.+..+.+.|+..+.++.|..++.+.|||.++.++ .+++..+|.++++|.+.+
T Consensus 296 ~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~ 355 (388)
T PRK08637 296 QILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIA 355 (388)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCChHHHHHHHHHHhhhcceEEEe
Confidence 777776666677777665556699999999999998774 455655576788998763
No 8
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.04 E-value=3.6e-09 Score=92.02 Aligned_cols=115 Identities=15% Similarity=0.368 Sum_probs=87.4
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|+++. .+++..+. ++.+ +.|+.+|...+.+++.+|+|+++..+|. +..++|+
T Consensus 278 SK~fg~------~GlRvG~ivs--~n~~l~~~----~~~~--~~~~~~s~~~q~~~~~~L~d~~~~~~~l---~~~r~~l 340 (447)
T PLN02607 278 SKDLGL------PGFRVGTIYS--YNDKVVTT----ARRM--SSFTLVSSQTQHLLASMLSDEEFTENYI---RTNRERL 340 (447)
T ss_pred hhcCCC------CcceEEEEEE--cCHHHHHH----HHHH--hhcCCCCHHHHHHHHHHhCCchhHHHHH---HHHHHHH
Confidence 899999 9999998664 45554433 3322 3466778889999999999988766664 4568899
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCCH----------HHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNA----------TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~----------~qv~~~L~~~~~Iyl~~~G 137 (142)
.+.|+.+.+.|++.+ +.+++-+.|||+++.|++ .++..+|.++++|++.|..
T Consensus 341 ~~~~~~~~~~L~~~g----i~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~ 402 (447)
T PLN02607 341 RKRYEMIVQGLRRAG----IECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGS 402 (447)
T ss_pred HHHHHHHHHHHHhCC----CCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCcc
Confidence 998999999999875 556788999999998742 2444447788999998854
No 9
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.03 E-value=1.5e-09 Score=89.38 Aligned_cols=113 Identities=19% Similarity=0.367 Sum_probs=92.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||+||+ .|.|+|.+.+ ++ .+.+++....+...+ |.+++.++..+|.++.+..+ +++.+++++
T Consensus 220 SK~~g~------~GlRvG~i~~---~~----~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~~~~~l 281 (363)
T PF00155_consen 220 SKSFGL------PGLRVGYIVA---PP----ELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEK---WLEELRERL 281 (363)
T ss_dssp TTTTTS------GGGTEEEEEE---EH----HHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred cccccc------cccccccccc---hh----hhhhhhhhccccccc--cchhhHHHHHhhhccccccc---ccccchhhH
Confidence 899999 9999999988 32 344556666665444 88899999999998776554 667788899
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCCH---HHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNA---TQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~---~qv~~~L~~~~~Iyl~~~ 136 (142)
++.|..|.+.|++.+ |..+..+.|||++..++. +++.++|.++++|++.+.
T Consensus 282 ~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg 335 (363)
T PF00155_consen 282 RENRDLLREALEEIG----ITVLPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPG 335 (363)
T ss_dssp HHHHHHHHHHHHHTT----SEEEHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEG
T ss_pred HHHHHHHHHHHHHhh----hheeeccCccEEEEEcccchHHHHHHHHHHhCCEEEEec
Confidence 999999999998884 999999999999998875 477777988889999884
No 10
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=98.99 E-value=8.3e-09 Score=87.14 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=86.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||+||+ .|.|+|.+++..+++ ....+...+..+.. ...+++...+.++..+|.+. .+ +.++.++++
T Consensus 238 fSK~~~~------~GlRiG~iv~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~---~~l~~~~~~ 304 (401)
T TIGR01264 238 LAKRWLV------PGWRLGWIIIHDRRG-ILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRT--PQ---EYFDGTLSV 304 (401)
T ss_pred CcccCCC------ccceEEEEEecCcch-hHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC--cH---HHHHHHHHH
Confidence 3899999 999999977643222 33344455555544 34455667888888998751 22 345566777
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC---------HHHHHHHhhhccceeeeCCCcc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---------ATQVRRKLIHDRSLKLSNVEKC 139 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~---------~~qv~~~L~~~~~Iyl~~~Gri 139 (142)
++..|+.+.+.|++. ++ |.++..+.|||+++.++ .+++..+|.++++|++.+.+..
T Consensus 305 ~~~~r~~l~~~L~~~--~~-~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f 369 (401)
T TIGR01264 305 LESNAMLCYGALAAV--PG-LRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCF 369 (401)
T ss_pred HHHHHHHHHHHHHhC--CC-CcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhc
Confidence 888888899999875 44 88778899999999753 4555444777899999876543
No 11
>PRK06108 aspartate aminotransferase; Provisional
Probab=98.83 E-value=4.8e-08 Score=81.21 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=84.8
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+.+ +++.++.+ .......++++|..++..+..+|.+. .+.++.+++++
T Consensus 231 SK~~g~------~G~RiG~~~~---~~~~~~~~----~~~~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~ 291 (382)
T PRK06108 231 SKNWAM------TGWRLGWLVA---PPALGQVL----EKLIEYNTSCVAQFVQRAAVAALDEG------EDFVAELVARL 291 (382)
T ss_pred hhhccC------cccceeeeeC---CHHHHHHH----HHHHHhcccCCChHHHHHHHHHHhCC------hHHHHHHHHHH
Confidence 899999 9999999875 44444444 33444567778888899999999764 23345678889
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+..|+.+.+.|++. ++ |..++.+.|||+++.+ +.+++..+|.++++|++.+.
T Consensus 292 ~~~~~~l~~~L~~~--~~-~~~~~p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg 347 (382)
T PRK06108 292 RRSRDHLVDALRAL--PG-VEVAKPDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPG 347 (382)
T ss_pred HHHHHHHHHHHHhC--CC-CcccCCCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCc
Confidence 99899999999775 23 8888889999988765 35566555878899999764
No 12
>PRK08068 transaminase; Reviewed
Probab=98.81 E-value=7.6e-08 Score=81.00 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=78.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||.||+ .|.|+|.++ .+++.++.+ .......+.++|...+..+...|.+.. +.++.++++
T Consensus 238 ~SK~~g~------~GlRiG~~~---~~~~l~~~l----~~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~ 298 (389)
T PRK08068 238 LSKTFNM------AGWRVAFAV---GNESVIEAI----NLLQDHLFVSLFGAIQDAAIEALLSDQ------SCVAELVAR 298 (389)
T ss_pred chhccCC------ccceeEeEe---cCHHHHHHH----HHHHhhccCCCChHHHHHHHHHHhCcH------HHHHHHHHH
Confidence 3899999 999999985 355555544 333333333444334555555554322 345677888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+++.|+.+.+.|++.+ |..++.+.|||.++.+ +++++.++|.++++|++.+.
T Consensus 299 ~~~~r~~~~~~L~~~g----~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg 354 (389)
T PRK08068 299 YESRRNAFISACREIG----WEVDAPKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPG 354 (389)
T ss_pred HHHHHHHHHHHHHHCC----CcccCCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecc
Confidence 8988888889998874 7777778899988754 57788777877899999774
No 13
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=98.81 E-value=8.7e-08 Score=83.68 Aligned_cols=115 Identities=20% Similarity=0.390 Sum_probs=84.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.++ ++++...+. +... ..++.+|...+.+++.+|.|+++.+.|.+ .++.++
T Consensus 271 SK~~~l------~GlRiG~li--~~~~~l~~~----~~~~--~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~---~~~~~l 333 (468)
T PLN02450 271 SKDLGL------PGFRVGAIY--SNDEMVVSA----ATKM--SSFGLVSSQTQYLLSALLSDKKFTKNYLE---ENQKRL 333 (468)
T ss_pred cccCCC------CCccEEEEE--ECCHHHHHH----HHHH--hhcCCCCHHHHHHHHHHhCCchhHHHHHH---HHHHHH
Confidence 899999 999999864 455543332 3322 23455677899999999999776555554 467889
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCCH----------HHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNA----------TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~----------~qv~~~L~~~~~Iyl~~~G 137 (142)
++.|+.+.+.|++.+ +.+++.+.|||.++.+++ .++..+|.++++|.+.|..
T Consensus 334 ~~rr~~l~~~L~~~g----i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~ 395 (468)
T PLN02450 334 KQRQKKLVSGLEAAG----IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGS 395 (468)
T ss_pred HHHHHHHHHHHHHcC----CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCcc
Confidence 998999999998875 677888999999998752 1233336678999998864
No 14
>PRK05957 aspartate aminotransferase; Provisional
Probab=98.80 E-value=7.3e-08 Score=81.33 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=81.4
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCCh-hhHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDP-KLKSQWLTEVKGMAD 79 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp-~L~~~W~~El~~m~~ 79 (142)
.||.||+ .|.|+|.+.+ +++.+ .++.........++|..++.++..+|+++ +..++|. +
T Consensus 231 ~SK~~g~------~GlRiG~~~~---~~~~~----~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-------~ 290 (389)
T PRK05957 231 LSKAYGF------ASWRIGYMVI---PIHLL----EAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHL-------P 290 (389)
T ss_pred chhhccC------ccceeEEEec---CHHHH----HHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHH-------H
Confidence 3899999 9999999885 34444 44554455555678889999999999874 3333333 3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccceeec----CCCHHHHHHHhhhccceeeeCCC
Q psy16706 80 RIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT----GLNATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~----gl~~~qv~~~L~~~~~Iyl~~~G 137 (142)
++++.|+.+.+.|++. ++-+...+.+.|||+.+ +++++++..+|.++++|++.+..
T Consensus 291 ~~~~~r~~l~~~L~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~ 350 (389)
T PRK05957 291 EIAQVRQILLKSLGQL--QDRCTLHPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGT 350 (389)
T ss_pred HHHHHHHHHHHHHHhc--CCCccccCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccch
Confidence 4677788888888865 33235556677899865 45677777768778999998854
No 15
>PRK08912 hypothetical protein; Provisional
Probab=98.73 E-value=1.8e-07 Score=78.51 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=79.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHh-hcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRA-FYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~-~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||.||+ .|.|+|.+++ +++..+.+.. .... .|+.||...+.++..+..+ .+|. +.++++
T Consensus 231 SK~~g~------~GlRiG~~~~---~~~~~~~l~~----~~~~~~~~~~~~~q~~~~~~l~~~----~~~~---~~~~~~ 290 (387)
T PRK08912 231 GKIFSL------TGWKVGFVCA---APPLLRVLAK----AHQFLTFTTPPNLQAAVAYGLGKP----DDYF---EGMRAD 290 (387)
T ss_pred hhhccC------cCceeEEEec---CHHHHHHHHH----HHhhccccCChHHHHHHHHHHhCC----HHHH---HHHHHH
Confidence 899999 9999998864 4455444432 3222 4777776655555555443 2343 357788
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-------CHHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-------NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-------~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
++..|+.+.+.|++.+ +..++.+.|||.++.+ +.+++.++|.++++|++.+...
T Consensus 291 ~~~~~~~l~~~L~~~g----~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 351 (387)
T PRK08912 291 LARSRDRLAAGLRRIG----FPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSA 351 (387)
T ss_pred HHHHHHHHHHHHHhCC----CcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchh
Confidence 8888999999998874 6777888999998755 3556776677889999987543
No 16
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.73 E-value=1.4e-07 Score=81.16 Aligned_cols=118 Identities=17% Similarity=0.284 Sum_probs=95.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||+|++ -|-|+|.+.+ +++ .+...+..+.-.+.++||..++..+...|++++- ..+++.|++.
T Consensus 234 ~SK~~~m------tGwRvG~~v~--~~~----~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~----~~~~~~~~~~ 297 (393)
T COG0436 234 FSKTYGM------TGWRIGWVVG--PPE----ELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS----DEVVEEMREE 297 (393)
T ss_pred ccccccc------cccceeEeec--ChH----HHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc----hHHHHHHHHH
Confidence 3999999 9999998866 333 3444455777788899999999999999998764 3455667788
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccc-ccccceeecCC----CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHIT-DQIGMFCYTGL----NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~-~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.|..+++.|.+.++ |.... .+.+||.+..+ ++++...+|.++++|-++|.-
T Consensus 298 ~~~rrd~l~~~l~~~~g---~~~~~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~ 356 (393)
T COG0436 298 YRERRDLLVEALNEIGG---LSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGS 356 (393)
T ss_pred HHHHHHHHHHHHHhcCC---eeeccCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEeccc
Confidence 99999999999987653 88888 67999999855 568888889999999999854
No 17
>PRK07550 hypothetical protein; Provisional
Probab=98.71 E-value=2.3e-07 Score=77.84 Aligned_cols=113 Identities=19% Similarity=0.334 Sum_probs=81.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||+||+ .|.|+|.++. +++. .+++.........++|..++.++..+|++ ...|.+ .+++.+
T Consensus 235 SK~~g~------~G~RiG~i~~---~~~~----~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~---~~~~~~ 295 (386)
T PRK07550 235 SKSYAL------TGHRVGAVVA---SPAR----IAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRA---GNRAEI 295 (386)
T ss_pred hhhccC------cccceEeeec---CHHH----HHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHH---HHHHHH
Confidence 899999 9999997775 3333 34445555566677888999999999985 234544 456678
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeec-----CCCHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-----GLNATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-----gl~~~qv~~~L~~~~~Iyl~~~G 137 (142)
++.|+.+.+.|.+.. .|... .+.|+|+++ +.+++++..+|.++++|.+.+..
T Consensus 296 ~~~~~~l~~~L~~~~---~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~ 352 (386)
T PRK07550 296 ARRRDAFRAVFARLP---GWELL-ASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGT 352 (386)
T ss_pred HHHHHHHHHHHHhCC---CceeC-CCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCch
Confidence 888888888888762 26543 467899887 45567776657788999998743
No 18
>PRK07777 aminotransferase; Validated
Probab=98.69 E-value=3.3e-07 Score=76.94 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=77.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHh-hcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRA-FYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~-~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||+||+ .|.|+|.++. +++.++. +...... .|+ ++...+.++...|.++ .+|. +.++..
T Consensus 231 SK~~g~------~GlRiG~~~~---~~~l~~~----~~~~~~~~~~~-~~~~~q~~~~~~l~~~---~~~~---~~~~~~ 290 (387)
T PRK07777 231 AKTFNV------TGWKIGWACG---PAPLIAA----VRAAKQYLTYV-GGAPFQPAVAHALDHE---DAWV---AALRDS 290 (387)
T ss_pred hhhccC------cCceeEEEec---CHHHHHH----HHHHHhhcccC-CCCHHHHHHHHHHhCC---cHHH---HHHHHH
Confidence 899999 9999998653 3444433 3333332 333 3344566677777654 3454 456677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC------CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.|..+.+.|++.+ |..++.+.|||.++.+ +++++..+|.++++|++.|..
T Consensus 291 ~~~~~~~l~~~L~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~ 349 (387)
T PRK07777 291 LQAKRDRLAAGLAEAG----FEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMS 349 (387)
T ss_pred HHHHHHHHHHHHHhCC----CCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCch
Confidence 8888888889998764 7778888999998642 567877778788999998754
No 19
>PRK09082 methionine aminotransferase; Validated
Probab=98.68 E-value=1.4e-07 Score=79.52 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=82.6
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.+.. +++.++. ++...+.+-.++|...+.+++.+|.+. .+| ++.+++.
T Consensus 234 ~SK~~~~------~G~RiG~iv~---~~~l~~~----~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~---~~~~~~~ 294 (386)
T PRK09082 234 FGKTYHV------TGWKVGYCVA---PAALSAE----FRKVHQYNTFTVNTPAQLALADYLRAE---PEH---YLELPAF 294 (386)
T ss_pred chhhccc------hhhhhhhhhC---CHHHHHH----HHHHHhhhcCCCChHHHHHHHHHHhCC---hHH---HHHHHHH
Confidence 3899999 9999999874 3444444 444444433456778888888888731 233 3446777
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecC------CCHHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTG------LNATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~g------l~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
+++.|..+.+.|++.+ |..++.+.|||.++- .+.+++..+|.++++|.+.|...
T Consensus 295 ~~~~~~~~~~~L~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~ 354 (386)
T PRK09082 295 YQAKRDRFRAALANSR----FKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSV 354 (386)
T ss_pred HHHHHHHHHHHHHhCC----CcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHH
Confidence 8887888888998754 777888999999863 45777877677899999987654
No 20
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=98.67 E-value=3.8e-07 Score=77.68 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=82.6
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.+++..+.. ..+.+...++... ..+.++|...+.++...|.+. .+.| ++.++++
T Consensus 247 fSK~~~~------pGlRlG~~i~~~p~~-~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~--~~~~---~~~~~~~ 313 (412)
T PTZ00433 247 TAKNLVV------PGWRLGWLLLVDPHG-NGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNT--PQEH---LEQIVAK 313 (412)
T ss_pred chhhcCC------CCeeEEEEEEeCCcc-cHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcC--cHHH---HHHHHHH
Confidence 3899999 999999988754421 1123444454433 333356667788888888752 2345 4456677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC---------HHHHHHHhhhccceeeeCCCcc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---------ATQVRRKLIHDRSLKLSNVEKC 139 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~---------~~qv~~~L~~~~~Iyl~~~Gri 139 (142)
+++.|+.|.+.|++.. + +..++-+.|||.++.++ .+++..+|.++++|.+.+....
T Consensus 314 ~~~~r~~l~~~L~~~~--~-~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f 378 (412)
T PTZ00433 314 LEEGAMVLYNHIGECI--G-LSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIF 378 (412)
T ss_pred HHHHHHHHHHHHhcCC--C-CcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCcccc
Confidence 7778888888887642 2 66677889999997552 4455555877899999886543
No 21
>PLN02231 alanine transaminase
Probab=98.66 E-value=6.1e-07 Score=80.02 Aligned_cols=123 Identities=15% Similarity=0.260 Sum_probs=93.0
Q ss_pred Cccc-ccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCCh----hhHHHHHHHHHH
Q psy16706 2 KKNY-GIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDP----KLKSQWLTEVKG 76 (142)
Q Consensus 2 SKnf-gL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp----~L~~~W~~El~~ 76 (142)
||.| |+ -|.|+|.+.+...+++..+.+... . ..-..+|..++.++..++++| .-..+|.+|++.
T Consensus 350 SK~~~g~------pGlRiGy~~~~~~~~~l~~~l~k~-~----~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~ 418 (534)
T PLN02231 350 SKGYYGE------CGKRGGYMEVTGFTSDVREQIYKV-A----SVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDG 418 (534)
T ss_pred CcccccC------CccceEEEEEecCCHHHHHHHHHH-H----hhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHH
Confidence 8875 89 999999999887777777666442 1 123456678899999999876 356789999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccccccccceee--cCCCHH--------------HHHHHhhhccceeeeCCCc
Q psy16706 77 MADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCY--TGLNAT--------------QVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 77 m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~--~gl~~~--------------qv~~~L~~~~~Iyl~~~Gr 138 (142)
+++.+++.|..+.+.|++. +| |...+-+.|||.+ +.++.. ....+|.++.+|.++|..-
T Consensus 419 i~~~~~~r~~~l~~~L~~~--~g-i~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~ 493 (534)
T PLN02231 419 ILSSLARRAKTLEDALNSL--EG-VTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSG 493 (534)
T ss_pred HHHHHHHHHHHHHHHHhcC--CC-ceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcc
Confidence 9999999888888999875 33 7888889999999 444322 2334477889999988643
No 22
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=98.63 E-value=6.7e-07 Score=78.97 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=84.4
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|.|+|.++. +++...+. ++. ...++.+|...+.+++.+|+|++..+ +=++.++.+
T Consensus 277 ~SK~~gl------pGlRvG~li~--~~~~l~~~----~~~--~~~~~~vs~~~Q~a~~~~L~d~~~~~---~~l~~~r~~ 339 (496)
T PLN02376 277 LSKDMGL------PGFRVGIVYS--FNDSVVSC----ARK--MSSFGLVSSQTQLMLASMLSDDQFVD---NFLMESSRR 339 (496)
T ss_pred ccccCCC------CcceEEEEEE--CCHHHHHH----HHH--HhhcCCCCHHHHHHHHHHhCChhHHH---HHHHHHHHH
Confidence 3899999 9999999664 45444333 222 22345677788999999999865322 336677888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCH-----------HHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNA-----------TQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~-----------~qv~~~L~~~~~Iyl~~~Gr 138 (142)
+...|+.+.+.|++.+ +.+++.+.|||+.+.+++ .++.++|.++.+|.+.|...
T Consensus 340 l~~r~~~l~~~L~~~g----i~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~ 404 (496)
T PLN02376 340 LGIRHKVFTTGIKKAD----IACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSS 404 (496)
T ss_pred HHHHHHHHHHHHHHCC----CcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccc
Confidence 9988888889998764 677888999999997742 34445566788999988543
No 23
>PRK09148 aminotransferase; Validated
Probab=98.62 E-value=4.1e-07 Score=77.37 Aligned_cols=114 Identities=13% Similarity=0.195 Sum_probs=80.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.++. +++.++.+. .+....-.+++...+.++..+|+++ .. .++.++..+
T Consensus 237 SK~~~~------pGlR~G~~v~---~~~~i~~l~----~~~~~~~~~~~~~~q~~~~~~L~~~---~~---~~~~~~~~~ 297 (405)
T PRK09148 237 SKTFSM------AGWRMGFAVG---NERLIAALT----RVKSYLDYGAFTPIQVAATAALNGP---QD---CIAEMRELY 297 (405)
T ss_pred ccccCC------cchheeeeeC---CHHHHHHHH----HHHHHhccCCChHHHHHHHHHHhCc---HH---HHHHHHHHH
Confidence 899999 9999999963 555544443 3333222234456788888999864 23 345667788
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC-------HHHHHHHhhhccceeeeCCCc
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN-------ATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~-------~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
++.|..+.+.|++.+ |..+.-+.|||.++.++ .+++...|.++.+|.+.+...
T Consensus 298 ~~~r~~l~~~L~~~~----~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~ 357 (405)
T PRK09148 298 KKRRDVLVESFGRAG----WDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVG 357 (405)
T ss_pred HHHHHHHHHHHHHcC----CccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchh
Confidence 888888889998864 66666789999998763 356655466789999988643
No 24
>PRK07682 hypothetical protein; Validated
Probab=98.61 E-value=4.9e-07 Score=75.58 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=83.8
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.+.. +++..+.+.. ....++.++|..++.++..+|++.+ .| ++.+++++
T Consensus 225 SK~~~~------~GlR~G~~~~---~~~~i~~l~~----~~~~~~~~~~~~~q~a~~~~l~~~~---~~---~~~~~~~~ 285 (378)
T PRK07682 225 SKGFAM------TGWRLGFIAA---PVYFSEAMLK----IHQYSMMCAPTMAQFAALEALRAGN---DD---VIRMRDSY 285 (378)
T ss_pred cccccC------hhhhhhhhhc---CHHHHHHHHH----HHHhhccCCCHHHHHHHHHHHhCCh---HH---HHHHHHHH
Confidence 899999 9999999764 5555555443 3334555677788899999997642 23 66778888
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeec-----CCCHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-----GLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-----gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
++.|+.+.+.|++.+ +....-+.|||.+. +.+.+++...|.++++|.+.+.
T Consensus 286 ~~~~~~~~~~L~~~~----~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg 341 (378)
T PRK07682 286 RKRRNFFVTSFNEIG----LTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPG 341 (378)
T ss_pred HHHHHHHHHHHHHCC----CccCCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCc
Confidence 888888889998874 55666788999986 3467778766777889999874
No 25
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=98.58 E-value=1.1e-06 Score=73.60 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=79.8
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||.||+ .|.|+|.++ .+++..+.+... ....-+.++...+.++..+|.+. ..|.+ .++++
T Consensus 235 fSK~~g~------~GlRiG~~i---~~~~l~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~---~~~~~---~~~~~ 295 (383)
T TIGR03540 235 LSKTYNM------TGWRIGMAV---GNADLIAGLGKV----KTNVDSGVFQAIQYAAIAALNGP---QDVVK---EIRKI 295 (383)
T ss_pred cccccCC------ccceeeEEe---CCHHHHHHHHHH----HHhcccCCChHHHHHHHHHHhCC---HHHHH---HHHHH
Confidence 3899999 999999874 355555554432 22222344555667777888764 45554 45778
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.|+.+.+.|++.+ |..++.+.|+|.++-+ +.+++..+|.++++|.+.+..
T Consensus 296 ~~~~~~~~~~~L~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~ 352 (383)
T TIGR03540 296 YQRRRDLLLEALKKIG----IDVEKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGV 352 (383)
T ss_pred HHHHHHHHHHHHHhCC----CEecCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecch
Confidence 8888999999998864 6777778999988755 456766657678999998753
No 26
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=98.57 E-value=9.6e-07 Score=74.00 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=77.3
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.++ .+++.++.+.. +.....+.++...+..+..+|++. ..| ++.+++++
T Consensus 238 SK~~g~------~GlRiG~~i---~~~~l~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~---~~~---~~~~~~~~ 298 (385)
T PRK09276 238 SKTYNM------TGWRIGFAV---GNADLIAGLGK----VKSNVDSGVFQAIQEAGIAALNGP---QEV---VEELRKIY 298 (385)
T ss_pred hhhcCC------cchhheeee---CCHHHHHHHHH----HHhhccCCCCHHHHHHHHHHHcCc---HHH---HHHHHHHH
Confidence 899999 999999875 34555555443 211222334445667777777652 234 45667888
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
.+.|+.|.+.|++.+ +..+..+.|||.++-+ +++++..+|.++++|++.+.
T Consensus 299 ~~~~~~l~~~L~~~~----~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g 353 (385)
T PRK09276 299 QERRDILVEGLRKLG----LEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPG 353 (385)
T ss_pred HHHHHHHHHHHHhCC----CcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCc
Confidence 888999999998763 6666678899888855 46676665878899999875
No 27
>PRK09105 putative aminotransferase; Provisional
Probab=98.57 E-value=7.9e-07 Score=75.02 Aligned_cols=104 Identities=20% Similarity=0.264 Sum_probs=76.1
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||+||+ .|.|+|.++. +++..+++.. . .++++|..++.++..+|.++ +|.+ .++++
T Consensus 231 fSK~~g~------~GlRiG~~v~---~~~~i~~l~~----~---~~~~~~~~~~~aa~~~L~~~----~~~~---~~~~~ 287 (370)
T PRK09105 231 FSKLYGM------AGMRLGLAAA---RPDLLAKLAR----F---GHNPLPVPAAAAGLASLRDP----KLVP---QRRAE 287 (370)
T ss_pred ccHhhcC------Cccceeeeec---CHHHHHHHHh----c---CCCCcCHHHHHHHHHHHhCH----HHHH---HHHHH
Confidence 4899999 9999998773 4555544432 2 35668888899999999874 3543 44556
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecC--CCHHHHHHHhhhccceee
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTG--LNATQVRRKLIHDRSLKL 133 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~g--l~~~qv~~~L~~~~~Iyl 133 (142)
+.+.|+.+.+.|++.+ |..++.+.|||. .. .+.+++.++|. +++|++
T Consensus 288 ~~~~r~~l~~~L~~~g----~~~~~~~~~f~~-~~~~~~~~~l~~~L~-~~gI~v 336 (370)
T PRK09105 288 NAAVREDTIAWLKKKG----YKCTPSQANCFM-VDVKRPAKAVADAMA-KQGVFI 336 (370)
T ss_pred HHHHHHHHHHHHHHCC----CCcCCCCCcEEE-EeCCCCHHHHHHHHH-HCCcEE
Confidence 7777888888998864 777777888876 54 46778888786 559988
No 28
>PTZ00377 alanine aminotransferase; Provisional
Probab=98.56 E-value=1.5e-06 Score=75.78 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=89.7
Q ss_pred Ccc-cccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChh----hHHHHHHHHHH
Q psy16706 2 KKN-YGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPK----LKSQWLTEVKG 76 (142)
Q Consensus 2 SKn-fgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~----L~~~W~~El~~ 76 (142)
||. ||+ -|-|+|.+.+...+++.++.+. .+... +.+++..++.++..+|++|+ ....|.++++.
T Consensus 298 SK~~~~~------~GlRiG~~~~~~~p~~li~~l~----~~~~~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~ 366 (481)
T PTZ00377 298 SKGIIGE------CGRRGGYFELTNIPPEVREQIY----KLASI-NLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDA 366 (481)
T ss_pred CcccccC------CcCceEEEEEeCCCHHHHHHHH----HHhhe-ecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence 897 588 8999999877655665555443 33333 33477789999999998653 35679999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecC--CC--------------HHH-HHHHhhhccceeeeCCCcc
Q psy16706 77 MADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTG--LN--------------ATQ-VRRKLIHDRSLKLSNVEKC 139 (142)
Q Consensus 77 m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~g--l~--------------~~q-v~~~L~~~~~Iyl~~~Gri 139 (142)
+..++++.|..+.+.|++. +| |...+-+.|||.+.- ++ .++ +.. |.++++|.++|....
T Consensus 367 ~~~~~~~rr~~l~~~L~~~--~g-~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~-ll~~~gV~v~pG~~F 442 (481)
T PTZ00377 367 IFTSLKRRAELLTDELNKI--EG-VSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLE-LLESTGIVVVPGSGF 442 (481)
T ss_pred HHHHHHHHHHHHHHHHhcC--CC-cEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHH-HHHHcCEEEeCCccc
Confidence 9999999899999999875 33 888888999999843 32 222 344 668899999876543
No 29
>PRK08636 aspartate aminotransferase; Provisional
Probab=98.55 E-value=1.5e-06 Score=73.77 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=76.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHh-hcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRA-FYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~-~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||+||+ .|.|+|.++ .+++.++++.. .... .++. +...+.++..+++++ ..| ++.+++.
T Consensus 247 SK~~~~------~GlRiG~iv---~~~~li~~~~~----~~~~~~~~~-~~~~q~~~~~~~~~~---~~~---~~~~~~~ 306 (403)
T PRK08636 247 SKSYNM------AGWRVGFVV---GNKKLVGALKK----IKSWLDYGM-FTPIQVAATIALDGD---QSC---VEEIRET 306 (403)
T ss_pred ccccCC------ccceeeeee---CCHHHHHHHHH----HHHHhcccC-ChHHHHHHHHHHhCc---HHH---HHHHHHH
Confidence 899999 999999964 35555555443 2222 2332 233455555666532 335 4456777
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC-------HHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN-------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~-------~~qv~~~L~~~~~Iyl~~~G 137 (142)
+.+.|+.+.+.|+..+ |+..+-+.|||.++.++ ++++..+|.++++|.+.+..
T Consensus 307 ~~~~~~~l~~~L~~~~----~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~ 366 (403)
T PRK08636 307 YRKRRDVLIESFANAG----WELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGI 366 (403)
T ss_pred HHHHHHHHHHHHHHCC----CcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecch
Confidence 8888888889998763 77777899999999774 35666557678999998863
No 30
>PRK06348 aspartate aminotransferase; Provisional
Probab=98.55 E-value=1.3e-06 Score=73.62 Aligned_cols=116 Identities=13% Similarity=0.183 Sum_probs=80.2
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.++. + ++ +...+....+.+-.++|..++.++..+|.++ ..|. +.+++.
T Consensus 232 fSK~~~l------~GlRiG~~v~--~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~---~~~~~~ 292 (384)
T PRK06348 232 FSKDFAM------TGWRIGYVIA--P-DY----IIETAKIINEGICFSAPTISQRAAIYALKHR---DTIV---PLIKEE 292 (384)
T ss_pred chhccCC------ccccceeeec--C-HH----HHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHH---HHHHHH
Confidence 3899999 9999999775 3 33 3444555556543456677888888888753 2343 345666
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeec-----CCCHHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-----GLNATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-----gl~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
++..|+.+.+.|+.. ++ +...+-+.|||.++ +++++++...|.++++|.+.+...
T Consensus 293 ~~~r~~~~~~~L~~~--~~-~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~ 352 (384)
T PRK06348 293 FQKRLEYAYKRIESI--PN-LSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKA 352 (384)
T ss_pred HHHHHHHHHHHHhcC--CC-ceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchh
Confidence 666677777888764 33 66667789999885 456778776577889999887543
No 31
>PRK06836 aspartate aminotransferase; Provisional
Probab=98.54 E-value=8.2e-07 Score=75.09 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=80.7
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhh-cCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAF-YSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~-~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||.||+ .|.|+|.+.+ .+....+..+...+....|.. +.++|...+.++..++.++.. +.+
T Consensus 243 SK~~~~------pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----------~~~ 304 (394)
T PRK06836 243 SKSLSL------PGERIGYIAV-NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATVD-----------VSI 304 (394)
T ss_pred hhhccC------cceeeEEEec-CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChHH-----------HHH
Confidence 899999 9999999664 222223334455555555543 456777899999999998532 234
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC---CHHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL---NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl---~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
++..|+.+.+.|++.| |..++.+.|||.++.+ +..++...| .+++|.+.+...
T Consensus 305 ~~~~r~~l~~~L~~~g----~~~~~~~gg~~~~~~~~~~~~~~~~~~l-~~~gv~v~~g~~ 360 (394)
T PRK06836 305 YKRNRDLLYDGLTELG----FECVKPQGAFYLFPKSPEEDDVAFCEKA-KKHNLLLVPGSG 360 (394)
T ss_pred HHHHHHHHHHHHHhCC----CEeecCCceEEEEEeCCCCCHHHHHHHH-HhCCEEEECchh
Confidence 5556777788887764 7778888899998755 577777746 788999988643
No 32
>PRK07681 aspartate aminotransferase; Provisional
Probab=98.53 E-value=1.7e-06 Score=73.11 Aligned_cols=112 Identities=13% Similarity=0.193 Sum_probs=79.3
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.++ + +++.++++. .....+-.+++...+.++..+|.+.. .|.+ .++.++
T Consensus 238 SK~~~~------~GlRiG~~i--~-~~~l~~~~~----~~~~~~~~~~s~~~q~~~~~~l~~~~---~~~~---~~~~~~ 298 (399)
T PRK07681 238 SKSYSL------AGSRIGYMI--G-NEEIVRALT----QFKSNTDYGVFLPIQKAACAALRNGA---AFCE---KNRGIY 298 (399)
T ss_pred ccccCC------ccceeEEEe--c-CHHHHHHHH----HHHhhcccCCCHHHHHHHHHHHhCcH---HHHH---HHHHHH
Confidence 899999 999999985 2 455554443 33333323466677888899998753 3544 445677
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
++.|..+.+.|++.+ |.....+.|+|+++-+ +++++..+|.++++|++.+.
T Consensus 299 ~~~~~~l~~~L~~~g----~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg 353 (399)
T PRK07681 299 QERRDTLVDGFRTFG----WNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPG 353 (399)
T ss_pred HHHHHHHHHHHHHCC----CcccCCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCC
Confidence 777888888888764 6666678899988754 45666655877799999875
No 33
>PRK12414 putative aminotransferase; Provisional
Probab=98.52 E-value=1.4e-06 Score=73.36 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=78.1
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.+++ +++.++. +..+....-.+++..++.++..+|.++. .|. .+++.
T Consensus 233 fSK~~~~------pGlRiG~~v~---~~~l~~~----l~~~~~~~~~~~s~~~q~a~~~~l~~~~---~~~----~~~~~ 292 (384)
T PRK12414 233 FGKSYHV------TGWRVGYCLA---PAELMDE----IRKVHQFMVFSADTPMQHAFAEALAEPA---SYL----GLGAF 292 (384)
T ss_pred ccccccC------ccceEEEEec---CHHHHHH----HHHHHhheecCCCcHHHHHHHHHhcCCh---HHH----HHHHH
Confidence 3899999 9999999874 3444444 3333332223456678888999998865 232 35667
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-------CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.|+.+.+.|++.+ |...+.+.|||.++.+ +.+.+.+ +.++++|.+.+..
T Consensus 293 ~~~~r~~l~~~L~~~g----~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~-~l~~~gV~v~pg~ 351 (384)
T PRK12414 293 YQRKRDLLARELAGSR----FELLPSEGSFFMLARFRHFSDESDSDFVLR-LIRDARVATIPLS 351 (384)
T ss_pred HHHHHHHHHHHHHhCC----CeecCCCcceEEEEcccccCCCCHHHHHHH-HHHhCCEEEecch
Confidence 7788888889998764 7777889999998743 2345545 6688999998854
No 34
>PRK08960 hypothetical protein; Provisional
Probab=98.52 E-value=1.5e-06 Score=73.09 Aligned_cols=114 Identities=16% Similarity=0.245 Sum_probs=78.9
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.++. +++.. ..+..+......+++...+.++...|.+. +.+-++.++..
T Consensus 232 ~SK~~g~------~GlRiG~~~~---~~~~~----~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-----~~~~l~~~~~~ 293 (387)
T PRK08960 232 FSKYFGM------TGWRLGWLVA---PPAAV----PELEKLAQNLYISASTPAQHAALACFEPE-----TLAILEARRAE 293 (387)
T ss_pred cccccCC------cccEEEEEEc---CHHHH----HHHHHHHhhhccCCCHHHHHHHHHHhhcC-----cHHHHHHHHHH
Confidence 3899999 9999999885 33333 33444444344455667778788888642 33445567778
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcc-ccccccceeecCC-----CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNH-ITDQIGMFCYTGL-----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~-i~~q~GmF~~~gl-----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+.+.|+.+.+.|++.+ |.. ...+.|||.++-+ +.+++..+|.++++|++.|.
T Consensus 294 ~~~~~~~l~~~L~~~~----~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 351 (387)
T PRK08960 294 FARRRDFLLPALRELG----FGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPG 351 (387)
T ss_pred HHHHHHHHHHHHHhcC----CcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCc
Confidence 8888888999998764 443 2356789988754 45677655778899999875
No 35
>PLN02368 alanine transaminase
Probab=98.51 E-value=1.4e-06 Score=75.07 Aligned_cols=108 Identities=19% Similarity=0.323 Sum_probs=83.1
Q ss_pred Cccc-ccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChh----hHHHHHHHHHH
Q psy16706 2 KKNY-GIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPK----LKSQWLTEVKG 76 (142)
Q Consensus 2 SKnf-gL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~----L~~~W~~El~~ 76 (142)
||.| |+ -|-|+|.+.+...+++.++.+.. +....|+ ++..++.++...|++|+ -.+.|.+|++.
T Consensus 290 SK~~~~~------~GlRiGy~i~~~~~~~li~~~~~----~~~~~~~-~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~ 358 (407)
T PLN02368 290 SKGYWGE------CGQRGGYFEMTNIPPKTVEEIYK----VASIALS-PNVSGQIFMGLMVNPPKPGDISYDQFVRESKG 358 (407)
T ss_pred CcccccC------CccceEEEEEeCCCHHHHHHHHH----HhcccCC-CCcHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Confidence 8998 89 99999998764335555544443 3234565 78889999999998764 23468999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeec--CCCHHHHHH
Q psy16706 77 MADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT--GLNATQVRR 123 (142)
Q Consensus 77 m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~--gl~~~qv~~ 123 (142)
|.+.+++.|..+.+.|++. || +...+-+.|||.+. +|++.-++.
T Consensus 359 ~~~~~~~rr~~~~~~L~~~--~g-~~~~~P~Gafy~~~~i~lp~~~~~~ 404 (407)
T PLN02368 359 ILESLRRRARMMTDGFNSC--KN-VVCNFTEGAMYSFPQIKLPPKAIEA 404 (407)
T ss_pred HHHHHHHHHHHHHHHHhCC--CC-eEeCCCCeeeEeccCCCCCHHHHHH
Confidence 9999999898888999876 22 77788899999994 778887765
No 36
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=98.51 E-value=2.3e-06 Score=71.27 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=77.1
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.++ .+++.++.+.. .......++|...+.++..+|.++ +| ++.++.++
T Consensus 222 SK~~~~------~GlRiG~i~---~~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~----~~---~~~~~~~~ 281 (364)
T PRK07865 222 SKQSNL------AGYRAGFVA---GDPALVAELLE----VRKHAGMMVPAPVQAAMVAALGDD----AH---VREQRERY 281 (364)
T ss_pred hhccCC------CceeeEEEe---cCHHHHHHHHH----HHHhcCCCcCHHHHHHHHHHhCCH----HH---HHHHHHHH
Confidence 899999 999999753 35555555443 333333345667888888999873 23 34556777
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+..|..+.+.|++.| |+...-+.|||.++.+ +..++.+.| .+++|.+.+.
T Consensus 282 ~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~v~pg 333 (364)
T PRK07865 282 ARRRAVLRPALEAAG----FRVDHSEAGLYLWATRGEDCWDTVAWL-AERGILVAPG 333 (364)
T ss_pred HHHHHHHHHHHHHcC----CcccCCCccEEEEEeCCCCHHHHHHHH-HHCCEEEeCc
Confidence 777888888888764 6666678999998865 456666646 6889999874
No 37
>PRK07683 aminotransferase A; Validated
Probab=98.48 E-value=2.5e-06 Score=71.94 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=79.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.++. +++.++++.. ....++..++..++.++..+|.+++ .| ++.+++++
T Consensus 232 SK~~~~------pGlRiG~i~~---~~~l~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~---~~---~~~~~~~~ 292 (387)
T PRK07683 232 SKSHSM------TGWRIGFLFA---PSYLAKHILK----VHQYNVTCASSISQYAALEALTAGK---DD---AKMMRHQY 292 (387)
T ss_pred cccccC------ccceeEEEEc---CHHHHHHHHH----HHHhccCCCChHHHHHHHHHHhCCh---HH---HHHHHHHH
Confidence 899999 9999999864 4444444443 3333344456677888888997654 23 55667778
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC-----CHHHHHHHhhhccceeeeCCCc
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-----NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-----~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
.+.|..+.+.|++.+ +...+.+.|||.+..+ +..++...|.++++|++.+...
T Consensus 293 ~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 350 (387)
T PRK07683 293 KKRRDYVYNRLISMG----LDVEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSA 350 (387)
T ss_pred HHHHHHHHHHHHHcC----CcccCCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchh
Confidence 888888888887753 6666788999988743 4555554366889999987543
No 38
>PRK08175 aminotransferase; Validated
Probab=98.48 E-value=2.4e-06 Score=72.13 Aligned_cols=113 Identities=16% Similarity=0.246 Sum_probs=78.5
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHH-hhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIR-AFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R-~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ 79 (142)
.||+||+ .|.|+|.+. .+++.++.+. .+.. ..|+ ++...+.++...|+++ .+.++.++.
T Consensus 235 ~SK~~g~------pGlRiG~~~---~~~~l~~~~~----~~~~~~~~~-~~~~~q~~~~~~l~~~------~~~~~~~~~ 294 (395)
T PRK08175 235 LSKSYNM------AGWRIGFMV---GNPELVSALA----RIKSYHDYG-TFTPLQVAAIAALEGD------QQCVRDIAE 294 (395)
T ss_pred ccccccC------cchhheeee---CCHHHHHHHH----HHHhhcccC-CCcHHHHHHHHHHhCc------HHHHHHHHH
Confidence 3899999 999999654 3565555444 3322 2344 3334566666777653 234677788
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC-------HHHHHHHhhhccceeeeCCC
Q psy16706 80 RIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN-------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~-------~~qv~~~L~~~~~Iyl~~~G 137 (142)
++++.|..+.+.|++.+ |.......|||.++-++ .+++..+|.++++|.+.+..
T Consensus 295 ~~~~~~~~~~~~L~~~~----~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~ 355 (395)
T PRK08175 295 QYKRRRDVLVKGLHEAG----WMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGI 355 (395)
T ss_pred HHHHHHHHHHHHHHHcC----CcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCch
Confidence 88888889999998764 66666778999999764 35666557678999998763
No 39
>PRK07337 aminotransferase; Validated
Probab=98.48 E-value=1.8e-06 Score=72.52 Aligned_cols=116 Identities=11% Similarity=0.235 Sum_probs=80.0
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||+||+ .|.|+|.+++ + ++ +...+.........+++..++..+...+.+..+ +.++.++..
T Consensus 230 ~SK~~~~------~G~RiG~~~~--~-~~----l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~-----~~~~~~~~~ 291 (388)
T PRK07337 230 FSKYFNM------TGWRLGWLVV--P-EA----LVGTFEKLAQNLFICASALAQHAALACFEPDTL-----AIYERRRAE 291 (388)
T ss_pred chhhcCC------chhheeeeec--C-HH----HHHHHHHHHHHhccCCChHHHHHHHHHhccCch-----HHHHHHHHH
Confidence 3899999 9999998764 2 33 344455555555556777788888888865432 224556778
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcc-ccccccceeecCC---------CHHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNH-ITDQIGMFCYTGL---------NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~-i~~q~GmF~~~gl---------~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
+++.|+.+.+.|++.+ +.. ..-+.|||.++.+ +++++..+|.++++|.+.+...
T Consensus 292 ~~~~r~~~~~~L~~~~----~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~ 355 (388)
T PRK07337 292 FKRRRDFIVPALESLG----FKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRD 355 (388)
T ss_pred HHHHHHHHHHHHHhcC----CccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchh
Confidence 8888888888888764 332 2347899999865 4566654476889999987543
No 40
>PLN00175 aminotransferase family protein; Provisional
Probab=98.47 E-value=2.5e-06 Score=73.09 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=80.2
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||+||+ -|.|+|.++. +++.++.+ .......-.++|...+.++...|.++ ..| ++.++..
T Consensus 257 fSK~~~~------~G~RiG~~v~---~~~l~~~l----~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~---~~~~~~~ 317 (413)
T PLN00175 257 LGKTFSL------TGWKIGWAIA---PPHLTWGV----RQAHSFLTFATATPMQWAAVAALRAP---ESY---YEELKRD 317 (413)
T ss_pred chhhccC------cchheeeeEe---CHHHHHHH----HHHHhhccCCCCHHHHHHHHHHHhCC---HHH---HHHHHHH
Confidence 3899999 9999998764 34444443 33333333455667888889999875 234 4556677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC------CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.|..+.+.|++.+ +...+.+.|||.++-+ +.+++..+|.++++|.+.|..
T Consensus 318 ~~~~~~~l~~~L~~~g----~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~ 376 (413)
T PLN00175 318 YSAKKDILVEGLKEVG----FKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPS 376 (413)
T ss_pred HHHHHHHHHHHHHHCC----CeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCch
Confidence 7877888889998864 5566778999998754 355666668788999998753
No 41
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=98.46 E-value=1.1e-06 Score=72.78 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=79.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+.+ +++.++.+... +..|+ ++..++.++..++++++ |.+ .+++++
T Consensus 193 SK~~g~------~G~R~G~i~~---~~~~~~~l~~~-----~~~~~-~s~~~q~~~~~~l~~~~----~~~---~~~~~~ 250 (330)
T TIGR01140 193 TKFFGL------AGLRLGFVVA---HPALLARLREA-----LGPWT-VNGPARAAGRAALADTA----WQA---ATRARL 250 (330)
T ss_pred chhhcC------chhhhhheeC---CHHHHHHHHhc-----CCCCC-chHHHHHHHHHHHhchH----HHH---HHHHHH
Confidence 899999 9999999775 45555555543 33454 34567889999998753 543 456888
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+..|+.+.+.|++.+. ... ....|+|..+.+ +.+++.++|. +++|++.+..
T Consensus 251 ~~~~~~l~~~L~~~~~---~~~-~~~~~~f~~~~~~~~~~l~~~l~-~~gi~v~pg~ 302 (330)
T TIGR01140 251 AAERARLAALLARLGG---LEV-VGGTALFLLVRTPDAAALHEALA-RRGILIRDFD 302 (330)
T ss_pred HHHHHHHHHHHHhCCC---ceE-CCCCCeEEEEEcCCHHHHHHHHH-HCCEEEEECC
Confidence 8889999999987652 233 345799999887 5677877785 5799998754
No 42
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=98.46 E-value=3.5e-06 Score=71.47 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=81.7
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.|++ .|.|+|.+++..++.-..+.+...++...... .+|+...+.++..+|.+. +..-++..++++
T Consensus 240 SK~~~~------pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~-----~~~~~~~~~~~~ 307 (403)
T TIGR01265 240 SKRWVV------PGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRI-LGPATIVQGALPDILENT-----PQEFFDGKISVL 307 (403)
T ss_pred ccccCC------CcceEEEEEEeCchhhhHHHHHHHHHHHhhhh-cCCChHHHHHHHHHHHhC-----hHHHHHHHHHHH
Confidence 899999 99999987775443322233445455554433 456777888888888751 223344556667
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC---------CHHHHHHHhhhccceeeeCCCc
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL---------NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl---------~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
++.|..+.+.|+.. ++ +.....+.|+|.++-+ +..++..+|.++++|.+.+...
T Consensus 308 ~~~~~~l~~~L~~~--~~-~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~ 370 (403)
T TIGR01265 308 KSNAELCYEELKDI--PG-LVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSA 370 (403)
T ss_pred HHHHHHHHHHHhcC--CC-ceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccc
Confidence 77788888888765 23 5555567899999866 3556655466789999987654
No 43
>PRK05764 aspartate aminotransferase; Provisional
Probab=98.46 E-value=3.4e-06 Score=70.62 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=80.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+. .+++..+ ++....+..+++++...+..+..+|++ ...| ++.++.++
T Consensus 237 SK~~~~------~G~RiG~i~---~~~~~~~----~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~---~~~~~~~~ 297 (393)
T PRK05764 237 SKAYAM------TGWRLGYAA---GPKELIK----AMSKLQSHSTSNPTSIAQYAAVAALNG---PQDE---VEEMRQAF 297 (393)
T ss_pred cccccC------ccceeEEEe---cCHHHHH----HHHHHHhhcccCCChHHHHHHHHHHcC---ChHH---HHHHHHHH
Confidence 899999 999999877 3444443 455566667778888888888999973 1234 44556677
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC---------HHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~---------~~qv~~~L~~~~~Iyl~~~G 137 (142)
.+.|+.+.+.|+++ ++ +.....+.|+|...-+. +.++...|.++++|.+.+..
T Consensus 298 ~~~~~~l~~~L~~~--~g-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 359 (393)
T PRK05764 298 EERRDLMVDGLNEI--PG-LECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGI 359 (393)
T ss_pred HHHHHHHHHHHhhC--CC-CcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEcccc
Confidence 77777788888875 22 66677788898876443 25665547788999988753
No 44
>PRK07568 aspartate aminotransferase; Provisional
Probab=98.43 E-value=4.4e-06 Score=70.05 Aligned_cols=114 Identities=19% Similarity=0.289 Sum_probs=79.4
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ +|.|+|.+ ++++++.++++.... ...| ++|...+.++..+|++++ .| ++.++..
T Consensus 233 ~SK~~~~------~G~R~G~~--~~~~~~~~~~~~~~~----~~~~-~~s~~~q~~~~~~l~~~~---~~---~~~~~~~ 293 (397)
T PRK07568 233 VSKRYSA------CGARIGCL--ISKNKELIAAAMKLC----QARL-SPPTLEQIGAAALLDTPE---SY---FDEVREE 293 (397)
T ss_pred chhhccC------CCcceEEE--ecCCHHHHHHHHHHh----hccC-CCCcHHHHHHHHHhhCCH---HH---HHHHHHH
Confidence 3899999 99999986 456666666654322 2234 466678999999998642 34 4456777
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC---CHHHHHHHhhhc-----cceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL---NATQVRRKLIHD-----RSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl---~~~qv~~~L~~~-----~~Iyl~~~ 136 (142)
+++.|+.+.+.|++.. + +....-+.|||.++-+ +.+++..+|.++ ++|.+.|.
T Consensus 294 ~~~~~~~l~~~L~~~~--~-~~~~~p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg 354 (397)
T PRK07568 294 YKKRRDILYEELNKIP--G-VVCEKPKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPA 354 (397)
T ss_pred HHHHHHHHHHHHhcCC--C-ceecCCCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCc
Confidence 8888888888887652 2 5555567889987765 456776667654 67888764
No 45
>PRK08361 aspartate aminotransferase; Provisional
Probab=98.43 E-value=2.8e-06 Score=71.57 Aligned_cols=116 Identities=11% Similarity=0.107 Sum_probs=82.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+.+ +++.++. +.......-.++|...+.++..+|++++.. +-++.+++++
T Consensus 236 SK~~~~------~GlRiG~~~~---~~~~~~~----~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~----~~~~~~~~~~ 298 (391)
T PRK08361 236 SKTFAM------TGWRLGFVIA---PEQVIKD----MIKLHAYIIGNVASFVQIAGIEALRSKESW----KAVEEMRKEY 298 (391)
T ss_pred chhcCC------cHhhhhhhcc---CHHHHHH----HHHHHhhhccCCChHHHHHHHHHhcCCccc----HHHHHHHHHH
Confidence 899999 9999998875 3444443 333333333455667788888899875432 3466788888
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeec-----CCCHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-----GLNATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-----gl~~~qv~~~L~~~~~Iyl~~~G 137 (142)
.+.|+.+.+.|++. ++ +....-+.|||+.+ +++++++..+|.++++|.+.+..
T Consensus 299 ~~~~~~~~~~L~~~--~~-~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~ 356 (391)
T PRK08361 299 NERRKLVLKRLKEM--PH-IKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGT 356 (391)
T ss_pred HHHHHHHHHHHHhC--CC-CeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCch
Confidence 88888888999875 23 66677788999875 34677777767778999987643
No 46
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.43 E-value=5e-06 Score=70.51 Aligned_cols=117 Identities=11% Similarity=0.108 Sum_probs=78.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHH----HHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEA----ARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGM 77 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~----~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m 77 (142)
||.||+ .|.|+|.++. +++.+ +.+...........+.+++...+.++..+|.++.. .|.. ..
T Consensus 245 SK~~g~------pGlRiG~~i~---~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~---~~ 310 (402)
T TIGR03542 245 SKTAGF------TGVRLGWTVV---PKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPIL---EA 310 (402)
T ss_pred ccccCC------CCcceEEEEe---cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHH---HH
Confidence 899999 9999997765 33332 22233333333345656777778888889987654 2333 34
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCC
Q psy16706 78 ADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 78 ~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+..++..|+.+.+.|++.+ +...+-..|+|.++.+ +.+++..+|.++++|.+.+.
T Consensus 311 ~~~~~~~~~~~~~~L~~~~----~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg 369 (402)
T TIGR03542 311 ISYYMENARILRKALEAAG----FKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPG 369 (402)
T ss_pred HHHHHHHHHHHHHHHHhcC----ceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCc
Confidence 4566666777878887754 5555556799999976 35666665878899998874
No 47
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=98.41 E-value=6e-06 Score=70.14 Aligned_cols=119 Identities=11% Similarity=0.130 Sum_probs=82.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHH--------HHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARI--------LSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLT 72 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v--------~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~ 72 (142)
.||.||+ -|.|+|.++. +++.++.+ ...+....+..|.++|...+.++..+|.+.. ..|
T Consensus 247 fSK~~~~------pGlRiG~~i~---~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~-- 313 (409)
T PRK07590 247 FSKTAGF------TGTRCAYTVV---PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQ-- 313 (409)
T ss_pred CccccCC------cCceeEEEEc---CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHH--
Confidence 3999999 9999998664 34444422 1122333445566678788888888888642 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCCC
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~G 137 (142)
++.+++.+++.|+.+.+.|++.+ |....-+.|||.++-+ +++++..+|.++++|.+.+..
T Consensus 314 -~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~ 377 (409)
T PRK07590 314 -IKELIDYYMENAKIIREGLESAG----FEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGS 377 (409)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcC----CceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChh
Confidence 45567778888888889998764 6655567899998866 456666557788999988753
No 48
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=98.40 E-value=4.4e-06 Score=70.19 Aligned_cols=112 Identities=13% Similarity=0.185 Sum_probs=71.7
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHh-hcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRA-FYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~-~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ 79 (142)
.||.||+ -|.|+|.++ .+++.++.+.. +... .++.++..-+.+++.+..+ .+-++.++.
T Consensus 237 fSK~~g~------~GlRiG~~v---~~~~li~~l~~----~~~~~~~~~~~~~~~~a~~~l~~~-------~~~l~~~~~ 296 (388)
T PRK07366 237 LSKSYNM------GGFRIGFAI---GNAQLIQALRQ----VKAVVDFNQYRGILNGAIAALTGP-------QATVQQTVQ 296 (388)
T ss_pred cccccCC------cchhheehc---CCHHHHHHHHH----HHhhcccCCCHHHHHHHHHHHhCc-------HHHHHHHHH
Confidence 3999999 999999876 35555544443 2211 1222221222233333222 234567778
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC------HHHHHHHhhhccceeeeCC
Q psy16706 80 RIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------ATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~------~~qv~~~L~~~~~Iyl~~~ 136 (142)
.+++.|+.+.+.|++.+ |.....+.|||.++.++ ..++..+|.++++|.+.+.
T Consensus 297 ~~~~~r~~l~~~L~~~~----~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg 355 (388)
T PRK07366 297 IFRQRRDAFINALHQIG----WPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPG 355 (388)
T ss_pred HHHHHHHHHHHHHHHCC----CcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCc
Confidence 88888888889998764 76667789999998663 4555444778899999875
No 49
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.40 E-value=4.9e-06 Score=66.85 Aligned_cols=114 Identities=20% Similarity=0.322 Sum_probs=86.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|++.+ +++ .+...++...+..+++||.+++..+...|.... ++++.+++++
T Consensus 203 ~K~~~~------~g~~~G~i~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~ 264 (350)
T cd00609 203 SKTFGL------PGLRIGYLIA--PPE----ELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE------EHLEELRERY 264 (350)
T ss_pred ccccCC------cccceEEEec--CHH----HHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH------HHHHHHHHHH
Confidence 688888 8999998764 432 345556666777789999999999999998654 6677888899
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC----HHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN----ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~----~~qv~~~L~~~~~Iyl~~~G 137 (142)
...++.|.+.|++.+.. .......|+|+++.++ .+.+.+ +.++++|++.+.+
T Consensus 265 ~~~~~~l~~~L~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~gi~i~~~~ 320 (350)
T cd00609 265 RRRRDALLEALKELGPL---VVVKPSGGFFLWLDLPEGDDEEFLER-LLLEAGVVVRPGS 320 (350)
T ss_pred HHHHHHHHHHHHhcCCc---cccCCCccEEEEEecCCCChHHHHHH-HHHhCCEEEeccc
Confidence 99899999999877632 2145678999998764 456666 5588999998764
No 50
>PRK08363 alanine aminotransferase; Validated
Probab=98.40 E-value=4.8e-06 Score=70.31 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=82.7
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.|++ -|.|+|.+++..+ ++.++.+...+....+..|+ ++..++.++..+|.++ .+|.+ .+++++
T Consensus 236 SK~~~~------~GlRiG~~~~~~~-~~~~~~l~~~~~~~~~~~~~-~s~~~q~~~~~~l~~~---~~~l~---~~~~~~ 301 (398)
T PRK08363 236 SKVYFA------TGWRLGYIYFVDP-EGKLAEVREAIDKLARIRLC-PNTPAQFAAIAGLTGP---MDYLE---EYMKKL 301 (398)
T ss_pred hhccCC------ccceEEEEEEeCc-HHHHHHHHHHHHHHhccccc-CChHHHHHHHHHHhCC---hHHHH---HHHHHH
Confidence 899999 9999998776333 45667777777666555564 5556788888888752 34444 456777
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC------C-HHHHHHHhhhccceeeeCCCc
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL------N-ATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl------~-~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
.+.|..+.+.|++. ++ |.....+.|||.++.+ + .+.+.+ +.++++|.+.+...
T Consensus 302 ~~~~~~l~~~L~~~--~~-~~~~~p~g~~~~~~~l~~~~~~~~~~~~~~-~l~~~gV~v~~g~~ 361 (398)
T PRK08363 302 KERRDYIYKRLNEI--PG-ISTTKPQGAFYIFPRIEEGPWKDDKEFVLD-VLHEAHVLFVHGSG 361 (398)
T ss_pred HHHHHHHHHHHhcC--CC-CEecCCCeEEEEEEEeccCCCCCHHHHHHH-HHHhCCEEEeCchh
Confidence 77788888888764 33 7766778999988533 2 344555 55789999887543
No 51
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.38 E-value=7.7e-06 Score=68.21 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=78.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.++ + +++.++.+ ....+....+|+..++.++...|.+. .| ++.++..
T Consensus 215 ~SK~~~~------~G~R~G~~i--~-~~~~~~~~----~~~~~~~~~~~~~~~q~~~~~~l~~~----~~---~~~~~~~ 274 (357)
T TIGR03539 215 LSKRSNL------AGYRAGFVA--G-DPALVAEL----LTVRKHAGLMVPAPVQAAMVAALGDD----GH---VAEQKAR 274 (357)
T ss_pred cccccCC------CceeEEEEe--c-CHHHHHHH----HHHHhhcccCCCHHHHHHHHHHcCCH----HH---HHHHHHH
Confidence 3899999 999999875 3 45554443 33334444456667888888888762 22 3445677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+++.|+.+.+.|++.+ ++..+-+.|||.+..+ +..++..+| .+++|.+.+.
T Consensus 275 ~~~~~~~~~~~L~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~l-~~~gV~v~pg 327 (357)
T TIGR03539 275 YAARRAQLKPALEKAG----FRIDHSEAGLYLWATRGEDAWDTVDRL-AELGILVAPG 327 (357)
T ss_pred HHHHHHHHHHHHHHcC----CCCcCCCccEEEEEECCCCHHHHHHHH-HhCCEEECCc
Confidence 7777777888888764 5667778999999865 566777756 7889998874
No 52
>PRK05942 aspartate aminotransferase; Provisional
Probab=98.37 E-value=6.7e-06 Score=69.44 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=76.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.++. +++.++.+. ......-.+++...+.++..+|++. ..| ++.+++++
T Consensus 242 SK~~~~------~GlRiG~i~~---~~~l~~~l~----~~~~~~~~~~~~~~q~~~~~~l~~~---~~~---~~~~~~~~ 302 (394)
T PRK05942 242 SKTYNM------AGWRVGFVVG---NRHIIQGLR----TLKTNLDYGIFSALQKAAETALQLP---DSY---LQQVQERY 302 (394)
T ss_pred hhccCC------hhhheeeeec---CHHHHHHHH----HHHhhcccCCCHHHHHHHHHHHhCc---HHH---HHHHHHHH
Confidence 899999 9999999853 455555444 3333222234556777888888642 223 34466788
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
++.|+.+.+.|++.+ +..++.+.|||.++.+ +++++..+|.++++|.+.+.
T Consensus 303 ~~~~~~~~~~L~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g 357 (394)
T PRK05942 303 RTRRDFLIQGLGELG----WNIPPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPG 357 (394)
T ss_pred HHHHHHHHHHHHHCC----CeecCCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCC
Confidence 887888888887764 6667778999987754 45665554668899998763
No 53
>PRK06290 aspartate aminotransferase; Provisional
Probab=98.36 E-value=5.8e-06 Score=70.91 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=77.8
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.++. +++..+. +........++++...+.++..+|.+++ |. +.++++
T Consensus 249 fSK~~g~------~GlRiG~ii~---~~~l~~~----l~~~~~~~~~~~~~~~q~aa~~~l~~~~----~~---~~~~~~ 308 (410)
T PRK06290 249 LSKAYNM------TGWRLAFVVG---NELIVKA----FATVKDNNDSGQFIAIQKAGIYALDHPE----IT---EKIREK 308 (410)
T ss_pred chhhcCC------chhheEeEEe---CHHHHHH----HHHHHhccccCCcHHHHHHHHHHhhCcH----HH---HHHHHH
Confidence 3899999 9999998763 4444443 3333333334455567788899998753 53 456677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-----------CHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-----------NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-----------~~~qv~~~L~~~~~Iyl~~ 135 (142)
+++.|..+.+.|++.| |..++-+.|||.++.+ +++++..+|.++..|-++|
T Consensus 309 ~~~~~~~l~~~L~~~g----~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p 370 (410)
T PRK06290 309 YSRRLDKLVKILNEVG----FKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVP 370 (410)
T ss_pred HHHHHHHHHHHHHhCC----CeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEEC
Confidence 7777888888998864 6777778999988755 3567777787777776655
No 54
>PRK07324 transaminase; Validated
Probab=98.35 E-value=8.6e-06 Score=68.61 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=79.1
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|.|+|.+.. +++.++++.. ....+..++|..++.++..+|.+ +..-++.+++.
T Consensus 220 ~SK~~~~------~G~RiG~i~~---~~~li~~~~~----~~~~~~~~~~~~~q~~a~~~l~~------~~~~l~~~~~~ 280 (373)
T PRK07324 220 MSKTYSL------PGIRVGWIAA---NEEVIDILRK----YRDYTMICAGVFDDMLASLALEH------RDAILERNRKI 280 (373)
T ss_pred chhhcCC------ccceeEEEec---CHHHHHHHHH----HhCcEEecCChHHHHHHHHHHcC------HHHHHHHHHHH
Confidence 3899999 9999999754 5666655543 22222334555677777777765 33455667777
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
+.+.|+.|.+.|++. + .+..+.-+.|+|.++-+ +.+++..+|.++++|.+.|...
T Consensus 281 ~~~~~~~l~~~l~~~--~-~~~~~~p~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~ 339 (373)
T PRK07324 281 VRTNLAILDEWVAKE--P-RVSYVKPKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNR 339 (373)
T ss_pred HHHHHHHHHHHHhcC--C-CceEECCCceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccc
Confidence 787788788888765 2 25556667788766633 5677766687899999998753
No 55
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=98.33 E-value=6.7e-06 Score=69.47 Aligned_cols=114 Identities=11% Similarity=0.161 Sum_probs=78.9
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.+.. +++.++++.. .......+++...+.++..+|.+... |. ..++.+
T Consensus 235 ~SK~~g~------~GlRvG~~v~---~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~~---~~---~~~~~~ 295 (391)
T PRK07309 235 LSKSHAM------TGWRIGLIFA---PAEFTAQLIK----SHQYLVTAATTMAQFAAVEALTNGKD---DA---LPMKKE 295 (391)
T ss_pred ChhhccC------ccceeEEEEe---CHHHHHHHHH----HHhhcccCCChHHHHHHHHHHhCChh---HH---HHHHHH
Confidence 3899999 9999999863 4555555443 22223335566678888888887432 22 346677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC------CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.|..+.+.|++.+ +..++.+.|+|..+.+ ++.++..+|.++++|.+.+..
T Consensus 296 ~~~~~~~~~~~l~~~~----~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~ 354 (391)
T PRK07309 296 YIKRRDYIIEKMTDLG----FKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGA 354 (391)
T ss_pred HHHHHHHHHHHHHHCC----CeecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCch
Confidence 7777888888888764 6777788999988644 345666547678999998764
No 56
>PRK06855 aminotransferase; Validated
Probab=98.33 E-value=1.2e-05 Score=69.30 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=83.0
Q ss_pred CCcccccccCCCCcccccceeEEEeCCH-HHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADK-DEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~-~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ 79 (142)
.||.|++ -|.|+|.+++-.... .....+...+..... ....+|...+.++...|.+++. .+-++.+++
T Consensus 241 ~SK~~~~------pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~----~~~~~~~~~ 309 (433)
T PRK06855 241 ISKELPW------PGSRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEY----KNYLKERNK 309 (433)
T ss_pred CccccCC------CcceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcH----HHHHHHHHH
Confidence 3899999 999999977643221 222333333333222 2345677889999999987643 334455677
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCH-------------------------------HHHHHHhhhc
Q psy16706 80 RIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNA-------------------------------TQVRRKLIHD 128 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~-------------------------------~qv~~~L~~~ 128 (142)
.+++.|+.+.+.|++. ++ |....-+.|||.++.+++ ++....|.++
T Consensus 310 ~~~~r~~~~~~~L~~~--~~-~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (433)
T PRK06855 310 RYEKRSNIAYEKLKDV--PG-LKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLAS 386 (433)
T ss_pred HHHHHHHHHHHHHhcC--CC-eeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 7888788888888754 34 777778899999997753 2333336688
Q ss_pred cceeeeCCCc
Q psy16706 129 RSLKLSNVEK 138 (142)
Q Consensus 129 ~~Iyl~~~Gr 138 (142)
.+|.++|...
T Consensus 387 ~gV~v~PG~~ 396 (433)
T PRK06855 387 TGICVVPLSS 396 (433)
T ss_pred cCEEEecCCc
Confidence 9999988743
No 57
>PRK06107 aspartate aminotransferase; Provisional
Probab=98.31 E-value=8.9e-06 Score=68.97 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=79.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||+||+ .|.|+|.++. +++..+. +.......-.+|+...+.++..+|++. ..|. +..++.+
T Consensus 240 SK~~~~------pGlRiG~~~~---~~~~~~~----~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~---~~~~~~~ 300 (402)
T PRK06107 240 SKTYAM------TGWRIGYAAG---PADLIAA----INKLQSQSSSCPSSISQAAAAAALNGD---QSFV---TESVAVY 300 (402)
T ss_pred chhhcC------cccceeeeec---CHHHHHH----HHHHHHhcccCCChHHHHHHHHHhcCC---hHHH---HHHHHHH
Confidence 899999 9999999752 3444443 444333333467778899999999753 2454 5556677
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC---------------CHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL---------------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl---------------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
++.|..+.+.|++. +| +..++-+.|||.++-+ +.+++...|.++++|-+.+..
T Consensus 301 ~~~~~~~~~~L~~~--~g-~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~ 368 (402)
T PRK06107 301 KQRRDYALALLNAI--PG-LSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGT 368 (402)
T ss_pred HHHHHHHHHHHhcC--CC-CcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCcc
Confidence 77788888888764 23 7777889999998754 334544337788999888754
No 58
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=98.30 E-value=6.1e-06 Score=68.80 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=74.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+ ++++++..+.+.. . +..| +++..++.++..+|++++ |. +.+++++
T Consensus 211 SK~~~~------~G~RiG~~--v~~~~~~~~~l~~----~-~~~~-~~~~~~~~~a~~~l~~~~----~~---~~~~~~~ 269 (356)
T PRK08056 211 TKFYAI------PGLRLGYL--VNSDDAAVARMRR----Q-QMPW-SINAFAALAGEVILQDRA----YQ---QATWQWL 269 (356)
T ss_pred hhhccC------cchhheee--ecCCHHHHHHHHH----h-CCCC-chhHHHHHHHHHHhCCHH----HH---HHHHHHH
Confidence 899999 99999987 4456555444432 1 2334 455578888888997643 43 5667778
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.|+.+.+.|++. ++ |...+. .|+|.++.+ +.+++...|. +++|.+.+
T Consensus 270 ~~~r~~l~~~L~~~--~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~gI~v~~ 320 (356)
T PRK08056 270 AEEGARFYQALCAL--PL-LTVWPG-RANYLFLRCERPDIDLQRALL-TQRILIRS 320 (356)
T ss_pred HHHHHHHHHHHhcC--CC-cEEcCC-CCcEEEEEcCCChHHHHHHHH-HCCeEEEE
Confidence 88888888888765 23 655554 588888866 4566777675 68998764
No 59
>PRK09265 aminotransferase AlaT; Validated
Probab=98.27 E-value=1.7e-05 Score=67.12 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=78.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.++.- .+++..+.+...+..+ .....++|..++.++..+|.+.+-..++.++. .++
T Consensus 239 SK~~~~------pGlRiG~~v~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~----~~~ 306 (404)
T PRK09265 239 SKAYRV------AGFRVGWMVLS-GPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPG----GRL 306 (404)
T ss_pred hhhccC------cccceEEEEEe-CchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHH----HHH
Confidence 899999 99999987643 3444334444444433 23345677788999999998654333333332 345
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC---------HHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---------ATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~---------~~qv~~~L~~~~~Iyl~~~ 136 (142)
.+.|+.+.+.|++. ++ |..++-+.|||.++-++ .+.+.+ +..+++|.+.+.
T Consensus 307 ~~~r~~~~~~L~~~--~~-~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~-~l~~~gv~v~pg 366 (404)
T PRK09265 307 YEQRDRAWELLNAI--PG-VSCVKPKGALYAFPKLDPKVYPIHDDEQFVLD-LLLQEKVLLVQG 366 (404)
T ss_pred HHHHHHHHHHHhcC--CC-CcccCCCcceEEEEEecccccCCCCHHHHHHH-HHHhCCEEEECc
Confidence 55577888888764 33 77788899999997553 234666 558899998764
No 60
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=98.24 E-value=1.9e-05 Score=67.54 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=79.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||- |.|+|.++ .+++.++.+.. .......++|...+.++..+|++++ |.+-++.+++.+
T Consensus 281 SK~~~~-------GlRiG~~i---~~~~~~~~~~~----~~~~~~~~~s~~~q~a~~~~l~~~~----~~~~l~~~~~~~ 342 (431)
T PRK15481 281 SKALGP-------DLRLAFVA---SDSATSARLRL----RLNSGTQWVSHLLQDLVYACLTDPE----YQARLAQARLFY 342 (431)
T ss_pred ccccCC-------CceeEEEe---CCHHHHHHHHH----HHhccccCCCHHHHHHHHHHHhCcc----HHHHHHHHHHHH
Confidence 777774 99999543 34555555432 2222223467788999999999865 344466778888
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC--HHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN--ATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~--~~qv~~~L~~~~~Iyl~~~ 136 (142)
+..|+.+.+.|++.+ |.+..-+.|||.++.++ .+++..+| .+++|.+.+.
T Consensus 343 ~~~r~~~~~~L~~~~----~~~~~p~gg~f~~~~l~~~~~~~~~~l-~~~gV~v~pg 394 (431)
T PRK15481 343 AQRRQKLARALQQYG----IAIPSPGDGLNLWLPLDTDSQATALTL-AKSGWLVREG 394 (431)
T ss_pred HHHHHHHHHHHHHcC----CccccCCCeEEEEEECCCCHHHHHHHH-HHCCcEEecC
Confidence 888999999998864 66667789999999884 46676657 5789988763
No 61
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.22 E-value=3.8e-05 Score=66.28 Aligned_cols=121 Identities=11% Similarity=0.123 Sum_probs=80.8
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHH--HHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAA--RILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMA 78 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~--~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~ 78 (142)
.||.|++ -|.|+|.+++-.+.. ..+ .+...++.. ...+.+||...+..+..+|.+.. .+-++.++
T Consensus 260 ~SK~~~~------pG~RlG~iv~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~~~~-----~~~~~~~~ 326 (430)
T PLN00145 260 ISKRWVV------PGWRLGWIATCDPNG-ILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIANTK-----EEFFTKTL 326 (430)
T ss_pred cccccCC------CCeeEEEEEEecchh-hhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHhcCH-----HHHHHHHH
Confidence 3899999 999999977654432 222 233334433 24455677778888888887521 23355677
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcc-ccccccceeecCCC---------HHHHHHHhhhccceeeeCCC
Q psy16706 79 DRIISMRQSLKDNLQKEGSNKPWNH-ITDQIGMFCYTGLN---------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 79 ~ri~~~R~~L~~~l~~~~~~~~w~~-i~~q~GmF~~~gl~---------~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++++.|..+++.|++. ++ +.. ..-+.|||.++.++ ..+...+|.++++|.+.|..
T Consensus 327 ~~~~~~~~~~~~~L~~~--~g-~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~ 392 (430)
T PLN00145 327 GLLKETADICYEKIKEI--KC-ITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGS 392 (430)
T ss_pred HHHHHHHHHHHHHHhcC--CC-CCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCcc
Confidence 78888888888998764 22 443 34689999998653 34455448789999998854
No 62
>PLN02656 tyrosine transaminase
Probab=98.20 E-value=3.4e-05 Score=65.79 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=78.3
Q ss_pred CCcccccccCCCCcccccceeEEEeC-----CHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSA-----DKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVK 75 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~-----~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~ 75 (142)
-||.|++ -|.|+|.++.-.+ +++.++.+.. ... .+..++...+.++..+|++.. ..| ++
T Consensus 239 fSK~f~~------pGlRiG~~i~~~~~~~~~~~~~~~~~~~----~~~-~~~~~s~~~q~a~~~~l~~~~--~~~---~~ 302 (409)
T PLN02656 239 LSKRWIV------PGWRLGWFVTTDPSGSFRDPKIVERIKK----YFD-ILGGPATFIQAAVPTILEQTD--ESF---FK 302 (409)
T ss_pred cchhccC------cceeEEEEEEeCcccccccHHHHHHHHH----HHh-hhcCCCHHHHHHHHHHHhcCc--HHH---HH
Confidence 3899999 9999999876322 3455555443 222 355677788999999997522 234 44
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCc-cccccccceeecCCC---------HHH-HHHHhhhccceeeeCCC
Q psy16706 76 GMADRIISMRQSLKDNLQKEGSNKPWN-HITDQIGMFCYTGLN---------ATQ-VRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 76 ~m~~ri~~~R~~L~~~l~~~~~~~~w~-~i~~q~GmF~~~gl~---------~~q-v~~~L~~~~~Iyl~~~G 137 (142)
.+++++++.|..+.+.|++.+ + +. ...-+.|||.++-++ .++ +.+ |.++.+|.++|..
T Consensus 303 ~~~~~~~~~r~~~~~~L~~~~--~-~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~-~l~~~gV~v~pg~ 371 (409)
T PLN02656 303 KTINILKQSSDICCDRIKEIP--C-ITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFK-LAREESVIILPGT 371 (409)
T ss_pred HHHHHHHHHHHHHHHHHhhCC--C-CcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHH-HHHhCCEEEecch
Confidence 566777888888889888752 2 22 235578999987652 323 445 5578999998764
No 63
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=98.20 E-value=3.2e-05 Score=64.23 Aligned_cols=110 Identities=14% Similarity=0.187 Sum_probs=73.8
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+. .+++..+.+.. .......++|...+.++...+.++ .|.+ ..+.++
T Consensus 205 SK~~g~------~GlRiG~~~---~~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~----~~~~---~~r~~l 264 (350)
T TIGR03537 205 SKRSGM------TGYRSGFVA---GDEKLISFLRK----LRANFGVASPDFVQAAAKAAWSDD----NHVL---ERRKIF 264 (350)
T ss_pred ccccCC------ccccceeee---cCHHHHHHHHH----HHHhhccCCCHHHHHHHHHHhCCc----HHHH---HHHHHH
Confidence 899999 999999764 34554444443 222222344445666666667653 3543 456788
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
...|+.+.+.|++.+ +...+.+.|||.++.+ +++++.+.|. +++|++.+.
T Consensus 265 ~~~~~~~~~~l~~~g----~~~~~~~g~~~~~~~~~~~~~~~~l~~~L~-~~gv~v~~g 318 (350)
T TIGR03537 265 KRKRDLFIEFFNKVG----LEYLYPDATFYLWVKVPSGIDAKDYALRLL-ENGIVVAPG 318 (350)
T ss_pred HHHHHHHHHHHHHCC----CcccCCCeEEEEEEECCCCCCHHHHHHHHH-HCCEEEcCc
Confidence 887888888888764 6667778999987743 5677777685 579999864
No 64
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=98.20 E-value=3.3e-05 Score=65.46 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=72.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHH-HHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTE-VKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~E-l~~m~~r 80 (142)
|| +++ -|.|+|.++. +++.++++. ........++|..++.++...|.++++.+.+.++ .+.+++|
T Consensus 248 SK-~~~------pGlRiG~~i~---~~~l~~~~~----~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r 313 (416)
T PRK09440 248 SK-LGL------PGVRCGIVIA---DEEIIEALS----NMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQK 313 (416)
T ss_pred cc-cCC------CcceEEEEeC---CHHHHHHHH----HHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 89 489 9999997552 455544443 3333333457888999999999998765545443 2334444
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecC-----CCHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTG-----LNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~g-----l~~~qv~~~L~~~~~Iyl~~~ 136 (142)
... +.+.|.+.-....+....-+.|||.++. .+.+++...| .+++|-+.+.
T Consensus 314 ~~~----~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~~~~~~~~~~l-~~~gV~v~pg 369 (416)
T PRK09440 314 VQL----AIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLPITTEELYQRL-KARGVLVVPG 369 (416)
T ss_pred HHH----HHHHHHHhcccCCeEEecCCCceEEEEECCCCCCCHHHHHHHH-HHCCEEEech
Confidence 444 4444443211112455566789999884 3567777756 6789988874
No 65
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=98.19 E-value=2.7e-05 Score=68.56 Aligned_cols=121 Identities=17% Similarity=0.269 Sum_probs=81.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.|++ -|-|+|.+++- .+++.++.+...+..+. ..-.+++..++.++...|.+++....|..+... +
T Consensus 352 SK~~~~------~G~RiG~~i~~-~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~----~ 419 (517)
T PRK13355 352 SKSHMI------AGYRIGWMILS-GNKRIAKDYIEGLNMLA-NMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGR----V 419 (517)
T ss_pred hhhccC------cccceEEEEee-CchhhHHHHHHHHHHHh-cCcCCcChHHHHHHHHHhcCCccHHHHHHHHHH----H
Confidence 899999 99999987754 34444445554454332 232346778888999999865544556655433 3
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC--------HHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN--------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~--------~~qv~~~L~~~~~Iyl~~~G 137 (142)
.+.|..+.+.|++. || +...+-+.|||.+.-++ .++...+|.++.+|-+++..
T Consensus 420 ~~~r~~l~~~L~~~--~g-~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~ 480 (517)
T PRK13355 420 YEQRELVYNALNAI--PG-ISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGT 480 (517)
T ss_pred HHHHHHHHHHHhcC--CC-cccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcc
Confidence 34477888888765 33 78888999999996542 33433336688999988754
No 66
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=98.18 E-value=2e-05 Score=65.38 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=75.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+.. +++.++.+.. . +..| +++..++.++..+|+++ .|.++ +++.+
T Consensus 221 SK~~g~------~GlRiG~~v~---~~~~~~~~~~----~-~~~~-~~~~~~q~~~~~~l~~~----~~~~~---~~~~~ 278 (359)
T PRK03158 221 SKAYGL------AALRVGYGIA---SEELIEKLNI----A-RPPF-NTTRIAQYAAIAALEDQ----AFLKE---CVEKN 278 (359)
T ss_pred hHhhcC------cchhhehhcC---CHHHHHHHHH----h-cCCC-CCCHHHHHHHHHHhcCH----HHHHH---HHHHH
Confidence 899999 9999998753 4555554432 2 3445 46778899999999864 45544 34456
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+..|+.+.+.|++.+ +..++. .|+|.++.+ +.+++.++|. +++|.+.+.
T Consensus 279 ~~~~~~~~~~l~~~~----~~~~~~-~g~~i~~~~~~~~~~~~~~l~-~~gv~v~~g 329 (359)
T PRK03158 279 AEGLEQYYAFCKEYG----LFYYPS-QTNFIFVDTGRDANELFEALL-KKGYIVRSG 329 (359)
T ss_pred HHHHHHHHHHHHHCC----CeeCCC-cCcEEEEECCCCHHHHHHHHH-HCCeEEeeC
Confidence 667888888887763 555554 589988865 5677777685 679998874
No 67
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.15 E-value=5.2e-05 Score=64.74 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=72.7
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHH-HHH--HHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKD-EAA--RILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGM 77 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~-~~~--~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m 77 (142)
.||.|++ .|.|+|.+. +++++ ..+ .+..++..... .+..++...+.++..+|.+. ...|.++ +
T Consensus 240 fSK~f~~------pGlRvG~~v--~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~~~~~~---~ 305 (409)
T PLN00143 240 ISKRWMI------PGWGLGWLV--TCDPSGLLQICEIADSIKKALN-PAPFPPTFIQAAIPEILEKT--TEDFFSK---T 305 (409)
T ss_pred chhhcCC------CccceEEEE--eeCchhhhhhHHHHHHHHHHHh-ccCCCCchHHHHHHHHHhcC--hHHHHHH---H
Confidence 3899999 999999984 43332 221 22233333322 23334566788888888752 1345444 4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC---------HHHHHHHhhhccceeeeCCC
Q psy16706 78 ADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 78 ~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~---------~~qv~~~L~~~~~Iyl~~~G 137 (142)
..++++.|+.+.+.|++.+ +.+-...-+.|||.++-++ ..+...+|.++.+|.+.|..
T Consensus 306 ~~~~~~~~~~~~~~L~~~~--~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~ 372 (409)
T PLN00143 306 INILRAALAFCYDKLKEIP--CIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGV 372 (409)
T ss_pred HHHHHHHHHHHHHHHhcCC--CCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCcc
Confidence 5556666777777787643 2111124468999999764 33443336688999998754
No 68
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.15 E-value=4.5e-05 Score=64.32 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=74.2
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|.|+|.++ + +++.++++.. .....-.++|...+..+...+.++ +-++..+++
T Consensus 242 ~SK~~~~------~GlRvG~~i--~-~~~l~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~ 301 (393)
T TIGR03538 242 LSKRSNL------PGLRSGFVA--G-DAEILKAFLR----YRTYHGCAMPIPTQLASIAAWNDE-------QHVRENRAL 301 (393)
T ss_pred chhhcCC------cccceEEEe--c-CHHHHHHHHH----HHHhhccCcCHHHHHHHHHHhcCh-------HHHHHHHHH
Confidence 3899999 999999854 3 4555554432 222111234556666666667653 234556777
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC--HHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN--ATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~--~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
+++.|..+.+.|++. +....-+.|+|.++-++ .+++..+|.++++|.++|...
T Consensus 302 ~~~~~~~~~~~L~~~-----~~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 356 (393)
T TIGR03538 302 YREKFAAVLEILGQV-----LDLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRF 356 (393)
T ss_pred HHHHHHHHHHHHHhh-----CcccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCcc
Confidence 777788888888754 22345688999999874 666766577889999987653
No 69
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.14 E-value=3.7e-05 Score=65.52 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=77.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.++ + +++..+++.. .......+++...+.++..+|.++. .|.++ ...++
T Consensus 250 SK~~~l------pGlRiG~ii--~-~~~l~~~~~~----~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~---~~~~~ 310 (405)
T PRK06207 250 SKTESL------SGYRLGVAF--G-SPAIIDRMEK----LQAIVSLRAAGYSQAVLRTWFSEPD---GWMKD---RIARH 310 (405)
T ss_pred hhhccC------cccceEEEE--c-CHHHHHHHHH----HHhHhccCCCHHHHHHHHHHHhCcH---HHHHH---HHHHH
Confidence 899999 999999864 3 4445444433 3333334456678888999997642 34333 33445
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC-----HHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN-----ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~-----~~qv~~~L~~~~~Iyl~~~G 137 (142)
.+.|..+.+.|++. ++ +...+.+.|||.++-++ .+++..+|.++++|.+.+..
T Consensus 311 ~~~r~~l~~~L~~~--~~-~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~ 368 (405)
T PRK06207 311 QAIRDDLLRVLRGV--EG-VFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGT 368 (405)
T ss_pred HHHHHHHHHHHhcC--CC-ceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCch
Confidence 56688888888764 22 67677788999998663 46677768778999998754
No 70
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=98.13 E-value=2.2e-05 Score=64.74 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=73.1
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHh--hcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRA--FYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~--~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ 79 (142)
||.||+ .|.|+|.+.. +++.++.+. ..... .| +++..++.++..+|.+++ |. +.+++
T Consensus 209 SK~~~~------~GlR~G~~~~---~~~~~~~l~----~~~~~~~~~-~~~~~~q~~~~~~l~~~~----~~---~~~~~ 267 (353)
T PRK05387 209 SKSRSL------AGLRVGFAIG---HPELIEALN----RVKNSFNSY-PLDRLAQAGAIAAIEDEA----YF---EETRA 267 (353)
T ss_pred hHhhcc------hhhhceeeec---CHHHHHHHH----HhhccCCCC-CcCHHHHHHHHHHhcCHH----HH---HHHHH
Confidence 899999 9999999863 455544443 22222 12 345677888888887643 43 35677
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC---CHHHHHHHhhhccceeee
Q psy16706 80 RIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL---NATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl---~~~qv~~~L~~~~~Iyl~ 134 (142)
++.+.|..+.+.|++.+ |..++ ..|+|.++.+ +++++.++| .+++|++.
T Consensus 268 ~~~~~~~~l~~~L~~~g----~~~~~-~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~ 319 (353)
T PRK05387 268 KVIATRERLVEELEALG----FEVLP-SKANFVFARHPSHDAAELAAKL-RERGIIVR 319 (353)
T ss_pred HHHHHHHHHHHHHHHCC----CeECC-CcCcEEEEECCCCCHHHHHHHH-HHCCEEEE
Confidence 88888989999998874 55444 4577877755 567888768 57799884
No 71
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=98.12 E-value=2.8e-05 Score=64.78 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||.||| -|.|+|.++. +++.++.+. . .+..| +++..++.++..+|.+. .|.+++ +++
T Consensus 214 ~SK~~~l------~GlRiG~~v~---~~~~~~~~~----~-~~~~~-~~s~~~q~~~~~~l~~~----~~~~~~---~~~ 271 (360)
T PRK07392 214 LTKFYSL------PGLRLGYAIA---HPDRLQRWQ----Q-WRDPW-PVNGLAAAAAIAALADR----DFQQQT---WAW 271 (360)
T ss_pred chhhhcC------CchheeeeeC---CHHHHHHHH----h-hCCCC-CCCHHHHHHHHHHhccH----HHHHHH---HHH
Confidence 3899999 9999999764 344444432 2 23345 45667889999999874 355544 345
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+++.|+.|.+.|++. ++ |...+ +.|+|.++.+ +++++..+|.++++|.+.+.
T Consensus 272 ~~~~r~~l~~~L~~~--~~-~~~~~-~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg 325 (360)
T PRK07392 272 LPPAREALFQGLASL--PG-LTPLP-SAANFLLVQSQGSALQLQEKLLQQHRILIRDC 325 (360)
T ss_pred HHHHHHHHHHHHHhC--CC-cEECC-CCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeC
Confidence 677788888888764 22 66555 7799999876 46677665667889998765
No 72
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=98.07 E-value=3.8e-05 Score=64.92 Aligned_cols=108 Identities=14% Similarity=0.206 Sum_probs=74.4
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|.|+|.+.. +++.++.+. .+ +..|+ ++..++.++...|.++ .| ++.++..
T Consensus 238 fSK~~gl------aGlRiGy~~~---~~~~i~~l~----~~-~~~~~-~~~~~q~aa~~aL~~~----~~---~~~~~~~ 295 (380)
T PLN03026 238 FSKRAGL------AGLRVGYGAF---PLSIIEYLW----RA-KQPYN-VSVAAEVAACAALSNP----KY---LEDVKNA 295 (380)
T ss_pred chHhhcC------ccccceeeec---CHHHHHHHH----Hh-cCCCC-CCHHHHHHHHHHhhCH----HH---HHHHHHH
Confidence 3899999 9999998764 444444433 22 33454 5667788888888864 34 3455677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.+.|..+.+.|++.+ +-.+....|+|.++.+ +.+++..+|. +++|.+.+
T Consensus 296 ~~~~r~~l~~~L~~~~----~~~~~p~~~~f~~~~~~~~~~~~~~~~~l~-~~gI~v~~ 349 (380)
T PLN03026 296 LVEERERLFGLLKEVP----FLEPYPSDANFILCRVTSGRDAKKLKEDLA-KMGVMVRH 349 (380)
T ss_pred HHHHHHHHHHHHHHCC----CCeECCCCCeEEEEECCCCCCHHHHHHHHH-HCCeEEEE
Confidence 7888888889998764 2223446688888855 4677887685 78998864
No 73
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.06 E-value=4.1e-05 Score=63.88 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=74.7
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|.|+|.+.. +++.++.+.. .+..|+ ++..++.++...|.+. +.|.+ ..++
T Consensus 226 fSK~~g~------~GlRiG~~~~---~~~~~~~l~~-----~~~~~~-~s~~~~~a~~~~l~~~---~~~~~----~~~~ 283 (368)
T PRK03317 226 MSKAFAF------AGGRLGYLAA---APAVVDALRL-----VRLPYH-LSAVTQAAARAALRHA---DELLA----SVAA 283 (368)
T ss_pred chhhhcc------chhhhhhhhC---CHHHHHHHHh-----cCCCCC-CCHHHHHHHHHHhhCH---HHHHH----HHHH
Confidence 3899999 9999999863 5556555542 234564 4456777888888753 23333 3344
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+...|..+.+.|++.| +...+.+.|||.+..+ +.+++.+.| .+++|++.+.|
T Consensus 284 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~ 336 (368)
T PRK03317 284 LRAERDRVVAWLRELG----LRVAPSDANFVLFGRFADRHAVWQGL-LDRGVLIRDVG 336 (368)
T ss_pred HHHHHHHHHHHHHHCC----CEeCCCCCcEEEEeccCCHHHHHHHH-HHCCEEEEeCC
Confidence 5666888888888764 6667778888877555 566777756 56899998654
No 74
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=98.03 E-value=4.9e-05 Score=62.50 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=75.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+.+ +++.++.+. .. +..|+ .+..++..+..++.+.. | ++.+++++
T Consensus 209 sK~~g~------~G~r~G~~~~---~~~~~~~~~----~~-~~~~~-~~~~~~~~~~~~l~~~~----~---~~~~~~~~ 266 (346)
T TIGR01141 209 SKAFGL------AGLRIGYAIA---NAEIIDALN----KV-RAPFN-LSRLAQAAAIAALRDDD----F---IEKTVEEI 266 (346)
T ss_pred hHhhhc------hhhhceeeec---CHHHHHHHH----hc-cCCCC-CCHHHHHHHHHHhCCHH----H---HHHHHHHH
Confidence 799999 9999998864 444444443 32 33454 34566777788887653 3 55677888
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~ 136 (142)
++.|..+.+.|++. +| |..++ ..|+|..+.+ +.+++..+| .+++|++.+.
T Consensus 267 ~~~~~~l~~~L~~~--~g-~~~~~-~~g~~~~~~~~~~~~~~~~~L-~~~gI~v~~g 318 (346)
T TIGR01141 267 NAERERLYDGLKKL--PG-LEVYP-SDANFVLIRFPRDADALFEAL-LEKGIIVRDL 318 (346)
T ss_pred HHHHHHHHHHHHhc--CC-CEECC-CcCCEEEEecCCCHHHHHHHH-HHCCeEEEeC
Confidence 88888888998875 22 66444 4678877766 578888867 5689999864
No 75
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=98.02 E-value=7.2e-05 Score=62.10 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=72.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.+.+ +++.++.+.. . +..|+ .+..++.++..+|++. .|. +.++..+
T Consensus 224 SK~~g~------~G~RiG~l~~---~~~~~~~l~~----~-~~~~~-~~~~~~~~a~~~l~~~----~~~---~~~~~~~ 281 (367)
T PRK02731 224 SKAYGL------AGLRVGYGIA---PPEIIDALNR----V-RQPFN-VNSLALAAAVAALDDD----AFV---EKSRALN 281 (367)
T ss_pred hHhhcC------cccceeeeeC---CHHHHHHHHH----c-cCCCC-CCHHHHHHHHHHhCCH----HHH---HHHHHHH
Confidence 899999 9999999854 3444444432 2 33443 4557788888888863 343 3445566
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~ 136 (142)
...|+.+.+.|++.+ +...+ ..|+|..+.+ +++++..+| .+++|++.+.
T Consensus 282 ~~~~~~l~~~L~~~g----~~~~~-~~g~~~~i~~~~~~~~~~~~~~L-~~~gI~v~~~ 334 (367)
T PRK02731 282 AEGMAWLTEFLAELG----LEYIP-SVGNFILVDFDDGKDAAEAYQAL-LKRGVIVRPV 334 (367)
T ss_pred HHHHHHHHHHHHHCC----CccCC-CCceEEEEECCCCCCHHHHHHHH-HHCCEEEEeC
Confidence 666777778888764 44454 4578877765 678888878 5689999864
No 76
>PLN02672 methionine S-methyltransferase
Probab=98.00 E-value=4.4e-05 Score=73.46 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=81.7
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCC---chHHHHHHHHhCChhhHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPP---IHGARIVQEILGDPKLKSQWLTEVKGMA 78 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp---~~Ga~iv~~IL~dp~L~~~W~~El~~m~ 78 (142)
||.|++ =|.|+|.++ +++++.++.+... . ..+.|. ..++..+...+.+. ...|.+.++.++
T Consensus 909 SKkf~l------pGLRIGylI--ap~~eLi~~l~~~-~-----~~s~~~~~~q~Aaaaalall~~~--~~~~~~~l~e~r 972 (1082)
T PLN02672 909 STELLS------GGHEFGFLA--LNDSVLIDAFHSA-P-----GLSRPHSTLKYTIKKLLGLKNQK--SSDLLDGVAEQK 972 (1082)
T ss_pred HHhhcc------HHHHheeEE--eCCHHHHHHHHHh-h-----hhcCCCcHHHHHHHHHHHHHhcc--CcHHHHHHHHHH
Confidence 799999 999999865 4666666665542 1 123332 22333223333211 135888999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccceeec---------------------CCCHHHHHHHhhhccceeeeCC
Q psy16706 79 DRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT---------------------GLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 79 ~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~---------------------gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+.+++.|+.+.+.|++++ |..++-+.|||.+. +++.+++.++|.++.+|.+.+.
T Consensus 973 ~~Lk~rRd~L~e~L~~~G----i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PG 1047 (1082)
T PLN02672 973 KILKSRAERLKETLEACG----WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSS 1047 (1082)
T ss_pred HHHHHHHHHHHHHHHHCC----CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecC
Confidence 999999999999999875 88888899999887 3467788877988889998874
No 77
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=97.99 E-value=9.6e-05 Score=62.09 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|-|+|.++. +++.++.+. .+. ..|+ ++..++.++..+|.++ .|. +.++++
T Consensus 221 fSK~~g~------~GlRiG~~v~---~~~~~~~l~----~~~-~~~~-~s~~~q~~~~~~l~~~----~~~---~~~~~~ 278 (369)
T PRK08153 221 FSKAYGL------AGARVGYAIG---APGTIKAFD----KVR-NHFG-MNRIAQAAALAALKDQ----AYL---AEVVGK 278 (369)
T ss_pred chHhccC------cchheeeeec---CHHHHHHHH----Hhh-cCCC-CCHHHHHHHHHHhcCH----HHH---HHHHHH
Confidence 3899999 9999998764 445555444 222 3454 6678899999999764 454 345777
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC-----HHHHHHHhhhccceeee
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN-----ATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~-----~~qv~~~L~~~~~Iyl~ 134 (142)
+.+.|+.+.+.|++.+ +..++ ..|+|.++.++ .+++.++| .+++|++.
T Consensus 279 ~~~~r~~~~~~L~~~g----~~~~p-~~~~f~~~~~~~~~~~a~~l~~~l-~~~Gi~v~ 331 (369)
T PRK08153 279 IAAARDRIAAIARANG----LTPLP-SATNFVAIDCGRDGAFARAVLDGL-IARDIFVR 331 (369)
T ss_pred HHHHHHHHHHHHHHCC----CccCC-CcCcEEEEECCCCcccHHHHHHHH-HHCCeEEe
Confidence 7788888888888765 55444 67899887662 45665546 36799983
No 78
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=97.98 E-value=9e-05 Score=62.12 Aligned_cols=109 Identities=19% Similarity=0.242 Sum_probs=74.1
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.++ +.+++.++.+.. .+..| +++...+..+...|.++ .|.++ ..+.
T Consensus 229 fSK~~~l------~GlRiG~~i--~~~~~l~~~~~~-----~~~~~-~~~~~~q~~~~~~l~~~----~~~~~---~~~~ 287 (371)
T PRK05166 229 FSKAYGL------AGLRVGYGL--VSDPELVGLLDR-----VRTPF-NVNGAAQAAALAALDDE----EHLAK---GVAL 287 (371)
T ss_pred chHhhhc------chhheeeee--cCCHHHHHHHHH-----hccCC-CCCHHHHHHHHHHhcCH----HHHHH---HHHH
Confidence 3899999 999999655 356665555543 23344 46767777888888864 34433 3455
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+++.|+.+.+.|++.+ +...+ ..|+|..+.+ +.+++...|. +++|.+.+.
T Consensus 288 ~~~~r~~l~~~L~~~g----~~~~p-~~g~fl~~~~~~~~~~l~~~l~-~~gi~v~p~ 339 (371)
T PRK05166 288 ALAERERLKKELAEMG----YRIAP-SRANFLFFDARRPASAVAEALL-RQGVIVKPW 339 (371)
T ss_pred HHHHHHHHHHHHHHCc----CeeCC-CcCCEEEEeCCCCHHHHHHHHH-HCCeEEecC
Confidence 5666788888888764 54444 5689998866 4567777685 569998764
No 79
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=97.97 E-value=8e-05 Score=62.23 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=76.0
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||.||+ .|.|+|.++ +++++.++.+.. .+..|+ .+...+.+...+|+++ .| ++.++++
T Consensus 211 ~SK~~gl------~G~RiG~lv--~~~~~~~~~~~~-----~~~~~~-~~~~~q~~~~~~l~~~----~~---~~~~~~~ 269 (354)
T PRK06358 211 FTKFFAI------PGLRLGYGL--TSNKNLAEKLLQ-----MREPWS-INTFADLAGQTLLDDK----EY---IKKTIQW 269 (354)
T ss_pred chhhccC------cchhheeee--cCCHHHHHHHHH-----hCCCCc-chHHHHHHHHHHhccH----HH---HHHHHHH
Confidence 3899999 999999984 455555454433 123453 4556778888888753 23 4566677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
+++.|+.+.+.|++. ++ +...+-+ |.|.++-+ +++++.++|. +++|.+.+...
T Consensus 270 ~~~~r~~l~~~L~~~--~~-~~~~~~~-g~f~~~~~~~~~~~~~~l~-~~gI~v~~~~~ 323 (354)
T PRK06358 270 IKEEKDFLYNGLSEF--KG-IKVYKPS-VNFIFFKLEKPIDLRKELL-KKGILIRSCSN 323 (354)
T ss_pred HHHHHHHHHHHHhcC--CC-cEEcCCc-ceEEEEEcCchHHHHHHHH-HCCeEEEECCC
Confidence 777888888999765 33 6555544 56777877 4577777675 57999987543
No 80
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=97.97 E-value=0.00015 Score=61.27 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=74.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.++ + +++.++.+.. .....-.+++...+..+...+.++ +.++..++++
T Consensus 244 SK~~~~------~GlRiG~~~--~-~~~l~~~~~~----~~~~~~~~~~~~~q~a~~~~~~~~-------~~~~~~~~~~ 303 (396)
T PRK09147 244 SKRSNV------PGLRSGFVA--G-DAALLKKFLL----YRTYHGCAMPPAVQAASIAAWNDE-------AHVRENRALY 303 (396)
T ss_pred ccccCC------ccceeeeec--C-CHHHHHHHHH----HhhhcccCCCHHHHHHHHHHhcch-------hHHHHHHHHH
Confidence 899999 999999854 3 4555554443 222111234445666666666543 2345667788
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCCCc
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
++.|..+.+.|++. +....-+.|+|.++-+ +..++..+|.++++|.+.+...
T Consensus 304 ~~~~~~~~~~L~~~-----~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~ 357 (396)
T PRK09147 304 REKFDAVTPILAPV-----LDVQLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSY 357 (396)
T ss_pred HHHHHHHHHHHHHh-----cCCCCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCcc
Confidence 88888888888763 3445568899999976 4666766577789999987643
No 81
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=97.96 E-value=0.00011 Score=61.40 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=75.1
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ =|.|+|.++. +++.++.+.. . +..|+. +..++.++...|+|++ |.+ .++++
T Consensus 196 fSK~~gl------~GlRiGy~v~---~~~li~~l~~----~-~~~~~v-s~~~q~a~~~~L~~~~----~~~---~~~~~ 253 (339)
T PRK06959 196 VGKFFGL------AGVRAGFVLA---APALLAALRD----A-LGAWTV-SGPARHAVRAAFADAA----WQA---AMRER 253 (339)
T ss_pred ChhhcCC------cchheEEEec---CHHHHHHHHH----h-cCCCCC-cHHHHHHHHHHhCcHH----HHH---HHHHH
Confidence 3899999 9999998763 4555554433 2 345664 4567888999998755 433 45688
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeee
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~ 134 (142)
+++.|+.+.+.|++.| +... ..|+|.++.+ +.+++...| .+++|.+.
T Consensus 254 ~~~~r~~l~~~L~~~g----~~~~--~~~~f~~~~~~~~~~l~~~l-~~~GI~vr 301 (339)
T PRK06959 254 LAADGARLAALLRAHG----FAVH--ATPLFSWTDDPRAAALHAAL-ARRGIWTR 301 (339)
T ss_pred HHHHHHHHHHHHHHCC----CCcc--CcceEEEEeCCCHHHHHHHH-HhCCeEEE
Confidence 8888888889998875 4433 3689988877 566777767 56799885
No 82
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=97.95 E-value=4.3e-05 Score=63.48 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=66.4
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||+||+ .|.|+|.+++ +++.++.+. .. +..| +++..++.++..+|++++...+|.. +
T Consensus 202 ~SK~~~l------~GlRiG~iv~---~~~~i~~~~----~~-~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~-------~ 259 (337)
T PRK03967 202 FSKAFGL------AGIRAGYAIA---NEEIIDALY----RI-KPPF-SLNILTMKIVRLALDHYDLIEERID-------Y 259 (337)
T ss_pred chHhhcc------hhhhheeeec---CHHHHHHHH----hh-cCCC-CCCHHHHHHHHHHHhCHHHHHHHHH-------H
Confidence 3899999 9999999875 455544443 32 3456 4578899999999998654443332 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.+.|..+.+.|.+.. ....|+|..+.++ +...|. +++|.+.+
T Consensus 260 ~~~~r~~l~~~L~~~~--------~~~~~~~~~~~~~---~~~~l~-~~gi~v~~ 302 (337)
T PRK03967 260 IIKERERVRRELGEYA--------YPSDANFLLLKLD---AYDYLL-ENGIVVRK 302 (337)
T ss_pred HHHHHHHHHHHhccCc--------CCCCCcEEEEhHH---HHHHHH-HCCEEEEe
Confidence 3344666677776532 2367899887763 334374 56898854
No 83
>PRK07908 hypothetical protein; Provisional
Probab=97.94 E-value=0.00014 Score=60.24 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=76.7
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|-|+|.+.+ +++.++.+... +..|+..+ ....++..++.+.. .++++.+++++
T Consensus 203 SK~~~l------~GlRiG~~~~---~~~~~~~~~~~-----~~~~~~~~-~~~~a~~~~~~~~~-----~~~~~~~~~~~ 262 (349)
T PRK07908 203 TKTWSL------AGLRVGYALG---APDVLARLTRG-----RAHWPVGT-LQLEAIAACCAPRA-----VAEAAADAARL 262 (349)
T ss_pred ccccCC------ccceeeeeec---CHHHHHHHHhc-----CCCCCccH-HHHHHHHHHhcccc-----hHHHHHHHHHH
Confidence 899999 9999998773 45555554432 22354433 34455666666322 23456678899
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC-HHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN-ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~-~~qv~~~L~~~~~Iyl~~~G 137 (142)
++.|+.+.+.|++.+ |...+...|+|..+-++ .+++...| ++++|.+.+..
T Consensus 263 ~~~r~~l~~~L~~~~----~~~~~p~~g~~~~~~~~~~~~~~~~l-~~~gI~v~~g~ 314 (349)
T PRK07908 263 AADRAEMVAGLRAVG----ARVVDPAAAPFVLVRVPDAELLRKRL-RERGIAVRRGD 314 (349)
T ss_pred HHHHHHHHHHHHhCC----cEeccCCCceEEEEECCcHHHHHHHH-HhCCEEEEECC
Confidence 998999999998763 77666688999999884 57777745 78899987643
No 84
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=97.89 E-value=0.00016 Score=60.73 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=74.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||.||| -|.|+|.++. +++.++.+.. . +..|+ .+..++.++..+|+|+++ +|. .....+
T Consensus 218 fSK~~gl------~GlRvGy~v~---~~~l~~~l~~----~-~~~~~-~~~~~~~~a~~~l~~~~~--~~~---~~~~~~ 277 (364)
T PRK04781 218 LSKAHAL------AAARIGSLIA---NAELIAVLRR----C-QAPYP-VPTPCAALAEQALSAPAL--AVT---ARRVAE 277 (364)
T ss_pred Chhhccc------ccceeeeeeC---CHHHHHHHHh----c-cCCCC-CCHHHHHHHHHHHhcccH--HHH---HHHHHH
Confidence 3899999 9999999653 4555544443 2 33454 455667777888887532 122 222335
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+++.|+.+.+.|++. ++ +..+....|+|.++-+ +.+++.+.| .+++|.+.+.
T Consensus 278 ~~~~r~~l~~~L~~~--~~-~~~~~p~~g~f~~~~~~~~~~~~~~l-~~~gI~v~~~ 330 (364)
T PRK04781 278 VRAERERLHAALAQL--PG-VRRVYPSQGNFLLVRFDDAEAAFQAL-LAAGVVVRDQ 330 (364)
T ss_pred HHHHHHHHHHHHHhC--CC-CCeECCCCCcEEEEEcCCHHHHHHHH-HHCCeEEeeC
Confidence 677788889999875 23 4433456799999977 567777756 6789988653
No 85
>PLN02187 rooty/superroot1
Probab=97.89 E-value=0.0003 Score=61.52 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=74.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHh-hcC-CCCchHHHHHHHHhCChhhHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRA-FYS-SPPIHGARIVQEILGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~-~~S-~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ 79 (142)
||.|++ -|.|+|.+++ ++++..-.+...+..+... .++ .|+...+..+..+|.+.. ..|.+ .+++
T Consensus 275 SK~f~~------pGlRiG~~v~--~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~---~~~~ 341 (462)
T PLN02187 275 SKGWVV------PGWKIGWIAL--NDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFA---KKNK 341 (462)
T ss_pred hhhcCC------ccceeEEEEe--cCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHH---HHHH
Confidence 899999 9999998654 4443322222233332222 233 457788899999997522 34554 4466
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC---------CHHHHHHHhhhccceeeeCCC
Q psy16706 80 RIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL---------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl---------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
.+++.|+.+.+.|++.+ +......-+.|||.++.+ +..+...+|.++.+|.+.|..
T Consensus 342 ~l~~~r~~l~~~L~~~~--~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~ 406 (462)
T PLN02187 342 ILKHNVDLVCDRLKDIP--CVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGD 406 (462)
T ss_pred HHHHHHHHHHHHHhhCC--CCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECcc
Confidence 77777888889998753 211112346789999844 243443337688999988754
No 86
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=97.88 E-value=0.00017 Score=60.04 Aligned_cols=106 Identities=12% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|.|+|.++. +++.++.+. . ++..|+ ++..++..+..+|++++ |.+ .....
T Consensus 200 ~SK~~~l------~GlRvG~~v~---~~~~~~~l~----~-~~~~~~-~~~~~q~a~~~~l~~~~----~~~---~~~~~ 257 (335)
T PRK14808 200 FSKAFSL------AAQRIGYVVS---SEKFIDAYN----R-VRLPFN-VSYVSQMFAKVALDHRE----IFE---ERTKF 257 (335)
T ss_pred chhhccC------cccceEEEEe---CHHHHHHHH----H-hcCCCC-CCHHHHHHHHHHHhCHH----HHH---HHHHH
Confidence 3899999 9999998774 344444443 2 223344 45566777777777542 333 23345
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC---CHHHHHHHhhhccceeee
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL---NATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl---~~~qv~~~L~~~~~Iyl~ 134 (142)
+.+.|+.+.+.|++.| +...+.+ |.|.++-+ +++++..+| .+++|++.
T Consensus 258 ~~~~r~~l~~~L~~~g----~~~~~~~-g~f~~~~l~~~~~~~~~~~l-~~~Gi~V~ 308 (335)
T PRK14808 258 IVEERERMKSALREMG----YRITDSR-GNFVFIFMEKEEKERLLEHL-RAKNIAVR 308 (335)
T ss_pred HHHHHHHHHHHHHHCC----CEECCCC-CeEEEEeCCCccHHHHHHHH-HHCCeEEE
Confidence 5555778888888764 6656654 55656544 456777756 67899875
No 87
>PRK03321 putative aminotransferase; Provisional
Probab=97.82 E-value=0.00018 Score=59.51 Aligned_cols=108 Identities=17% Similarity=0.261 Sum_probs=70.6
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.+.+ +++.++.+.. . +..| +++..++..+...|.+ ...|.+.++.+
T Consensus 214 ~SK~~g~------~GlRiG~~v~---~~~~~~~~~~----~-~~~~-~~s~~~q~~a~~~l~~---~~~~~~~~~~~--- 272 (352)
T PRK03321 214 FSKAYGL------AGLRVGYAVG---HPEVIAALRK----V-AVPF-SVNSLAQAAAIASLAA---EDELLERVDAV--- 272 (352)
T ss_pred chHHhhh------HHHhhhhhcC---CHHHHHHHHH----h-cCCC-CCCHHHHHHHHHHhcC---HHHHHHHHHHH---
Confidence 3899999 9999999764 4556555543 2 2344 3455666666666763 23455444333
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~ 136 (142)
.+.|..+.+.|++.+ |...+ ..|+|.++.+ +.+++.++| ++++|.+.+-
T Consensus 273 -~~~r~~~~~~L~~~~----~~~~~-~~g~~i~i~l~~~~~~~~~~l-~~~gI~v~~~ 323 (352)
T PRK03321 273 -VAERDRVRAALRAAG----WTVPP-SQANFVWLPLGERTADFAAAA-AEAGVVVRPF 323 (352)
T ss_pred -HHHHHHHHHHHHHCC----CccCC-CCCCEEEEeCCCCHHHHHHHH-HHCCEEEEcc
Confidence 334666778888754 65444 4689988876 467777767 6789998763
No 88
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=97.82 E-value=0.00012 Score=60.65 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=73.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
|| ||+ .|.|+|.++. +++.++++.. .+..| +++..++.++..+|++.+ .++.+.+++
T Consensus 217 SK-~~~------~GlRiG~~i~---~~~~i~~~~~-----~~~~~-~~~~~~q~~a~~~l~~~~-------~~~~~~~~~ 273 (356)
T PRK04870 217 SK-LGL------AGLRLGYLAG---HPAWIAELDK-----VRPPY-NVNVLTQATALFALEHVD-------VLDAQAAQL 273 (356)
T ss_pred hh-hhh------HHHhhhhhhC---CHHHHHHHHH-----ccCCC-cCCHHHHHHHHHHHhCHH-------HHHHHHHHH
Confidence 89 999 9999998753 3444444332 23445 456677778888887532 245666777
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~ 136 (142)
++.|+.+.+.|+.. ++ |...+ ..|+|.++.+ +++++...| ++++|.+.+.
T Consensus 274 ~~~~~~l~~~L~~~--~~-~~~~~-~~~~~~~~~~~~~~~~~~~l-~~~gI~v~~~ 324 (356)
T PRK04870 274 RAERTRLAAALAAL--PG-VTVFP-SAANFILVRVPDAAAVFDGL-KTRGVLVKNL 324 (356)
T ss_pred HHHHHHHHHHHHhC--CC-cEECC-CCCeEEEEECCCHHHHHHHH-HHCCEEEEEC
Confidence 88888888888765 33 54444 5677888877 567777745 7899999764
No 89
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=97.80 E-value=0.00037 Score=57.70 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=72.9
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ =|.|+|.+.. +++.++.+.. . +..|+. +...+.++...|++++ |. +.++.+
T Consensus 190 fSK~~gl------~GlRiG~~v~---~~~l~~~~~~----~-~~~~~~-~~~~~~~~~~~L~~~~----~~---~~~~~~ 247 (330)
T PRK05664 190 FGKFFGL------AGARLGFVLA---EPALLRALAE----L-LGPWTV-SGPTRWLAQAALADTP----WQ---RRQRER 247 (330)
T ss_pred ccccccC------CCcceEEEEe---CHHHHHHHHH----h-cCCCCC-CHHHHHHHHHHHhChH----HH---HHHHHH
Confidence 3999999 9999999774 4555554443 2 334543 4466778888888753 32 356778
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccccccc--ceeecCC-CHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIG--MFCYTGL-NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~G--mF~~~gl-~~~qv~~~L~~~~~Iyl~~ 135 (142)
+...|+.+.+.|++.+ + ....| +|..+.+ +.+++.++| .+++|.+..
T Consensus 248 ~~~~r~~l~~~L~~~~----~---~~~~~~~~f~~~~~~~~~~~~~~l-~~~gi~v~~ 297 (330)
T PRK05664 248 LLAASQRLAALLRRHG----L---TPAGGCALFQWVRTEDAAALHEFL-ARRGILTRL 297 (330)
T ss_pred HHHHHHHHHHHHHHCC----C---cccCCcceEEEEecCCHHHHHHHH-HHCCeEEEE
Confidence 8888888999998875 2 22345 7888776 677887757 678998853
No 90
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=97.80 E-value=0.0003 Score=58.45 Aligned_cols=106 Identities=17% Similarity=0.324 Sum_probs=72.0
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|.|+|.+.. +++.++++.. . +..|+ ++..++.++...|.++ .|.++ +++.
T Consensus 220 fSK~~~~------~GlRiG~~~~---~~~~~~~~~~----~-~~~~~-~~~~~~~~a~~~l~~~----~~~~~---~~~~ 277 (357)
T PRK14809 220 FSKAYGL------AGLRLGYAVV---PEEWADAYAR----V-NTPFA-ASELACRAGLAALDDD----EHVER---TVET 277 (357)
T ss_pred chhHhcC------cchhheeeec---CHHHHHHHHH----h-CCCCC-CCHHHHHHHHHHhCCH----HHHHH---HHHH
Confidence 3899999 9999998774 3445554433 2 33454 5667788888888863 35444 3455
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~G 137 (142)
++..|..+.+.|.... | ...|+|.++.+ +.+++...| ++++|.+.+..
T Consensus 278 ~~~~r~~l~~~L~~~~----~----~~~g~f~~~~~~~~~~~~~~l-~~~gv~v~~g~ 326 (357)
T PRK14809 278 ARWAREYIREELDAPT----W----ESAGNFVLAEVGDASAVAEAA-QERGVIVRDCT 326 (357)
T ss_pred HHHHHHHHHHHhcCcc----C----CCCCCEEEEECCCHHHHHHHH-HHCCEEEEECc
Confidence 6666777777775432 2 36899999877 567777756 67899888754
No 91
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=97.79 E-value=0.00023 Score=59.23 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.+. .+++.++.+.. + +. ..+++...+.++..+|+++. .+ ...+.
T Consensus 211 ~SK~~~~------~GlRiG~~v---~~~~~~~~~~~----~-~~-~~~~~~~~q~~~~~~l~~~~-----~~---~~~~~ 267 (351)
T PRK14807 211 LSKAFGL------AGLRVGYAV---ANENILKYLNL----V-KS-PYNINSLSQVIALKVLRTGV-----LK---ERVNY 267 (351)
T ss_pred chHhccc------chhceeeee---cCHHHHHHHHH----c-cC-CCCcCHHHHHHHHHHHhHHH-----HH---HHHHH
Confidence 3899999 999999987 35555555442 2 12 23456678888888887532 22 22234
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.+.|..+.+.|++. +| |...+ ..|+|.++.+ +.+++.+.| .+++|.+.+
T Consensus 268 ~~~~r~~l~~~l~~~--~g-~~~~~-~~~~~~~i~~~~~~~~~~~l-~~~gV~v~~ 318 (351)
T PRK14807 268 ILNERERLIKELSKI--PG-IKVYP-SKTNFILVKFKDADYVYQGL-LERGILVRD 318 (351)
T ss_pred HHHHHHHHHHHHHhC--CC-cEECc-CCccEEEEEcCCHHHHHHHH-HHCCEEEEE
Confidence 556677788888653 33 76555 5588888877 567777756 467998854
No 92
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=97.79 E-value=0.00012 Score=61.14 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||| -|.|+|.+.. +++.++.+.. .+..|+ .+...+.++...|.+... +| ++...+.
T Consensus 211 fSK~~gl------aGlRiGy~i~---~~~~i~~l~~-----~~~~~~-v~~~~~~~a~~~L~~~~~--~~---~~~~~~~ 270 (351)
T PRK01688 211 LSKAFAL------AGLRCGFTLA---NEEVINLLLK-----VIAPYP-LSTPVADIAAQALSPQGI--AA---MRERVAE 270 (351)
T ss_pred chHhhcC------HHHHHhHHhC---CHHHHHHHHh-----ccCCCC-CCHHHHHHHHHHHhcchH--HH---HHHHHHH
Confidence 3899999 9999999763 5666555443 244454 444566677777776421 23 3445566
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.+.|+.|.+.|++.+ + +..+....|+|.+..+ +++++.++|. +++|.+.+
T Consensus 271 ~~~~r~~l~~~L~~~~--~-~~~~~ps~~nfi~~~~~~~~~l~~~L~-~~gi~vr~ 322 (351)
T PRK01688 271 INANRQWLIAALKEIP--C-VEQVFDSETNYILARFTASSAVFKSLW-DQGIILRD 322 (351)
T ss_pred HHHHHHHHHHHHHhCC--C-CCeECCCCCcEEEEEcCCHHHHHHHHH-HCCeEEEE
Confidence 7777888888888763 2 4333445688988876 4677777684 77998864
No 93
>PRK05839 hypothetical protein; Provisional
Probab=97.78 E-value=0.00023 Score=59.88 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=68.0
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ =|.|+|.++. +++.++++.. .....-.+.|...+..+...|.+++ |.+ .++++
T Consensus 230 fSK~~~~------~GlRiG~ii~---~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~----~~~---~~~~~ 289 (374)
T PRK05839 230 ISKRSSA------PGLRSGFIAG---DASILKKYKA----YRTYLGCASPLPLQKAAAVAWLDDE----HAE---FFRNI 289 (374)
T ss_pred cccccCC------ccceeEEEec---CHHHHHHHHH----HHhhcCCCCChHHHHHHHHHhccch----HHH---HHHHH
Confidence 3899999 9999999764 4555554433 2222112345556666666776533 333 34556
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+++.|+.+.+.| + +. ..+.|+|+++.+ +.+++..+|.++++|.+.+.
T Consensus 290 ~~~~~~~~~~~l---~----~~--~p~gg~fi~~~~~~~~~~~~~l~~~~gi~v~pg 337 (374)
T PRK05839 290 YAKNLKLAREIL---G----IT--IPPATFYVWLPVDNDEEFTKKLYQNEGIKVLPG 337 (374)
T ss_pred HHHHHHHHHHhc---C----CC--CCCeeEEEEEeCCChHHHHHHHHHHCCEEEeCc
Confidence 666666665554 2 22 447899999988 55666666877899999874
No 94
>PRK09275 aspartate aminotransferase; Provisional
Probab=97.76 E-value=0.00026 Score=63.58 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC--------------------CHHHHHHHhhhccceee
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--------------------NATQVRRKLIHDRSLKL 133 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--------------------~~~qv~~~L~~~~~Iyl 133 (142)
++.|+++++..|..|++.| +. .+...+.+.|||+++.+ +++++..+|.++++|-+
T Consensus 405 ~~~~~~~~~~Rr~~l~~~L---g~--~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v 479 (527)
T PRK09275 405 KKAMKDIIRRRYKALYEGL---GL--PEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVL 479 (527)
T ss_pred HHHHHHHHHHHHHHHHHHc---CC--CCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEE
Confidence 4567888888888888877 31 24445778999999855 34566667999999999
Q ss_pred eCCC
Q psy16706 134 SNVE 137 (142)
Q Consensus 134 ~~~G 137 (142)
+|..
T Consensus 480 ~PG~ 483 (527)
T PRK09275 480 LPGG 483 (527)
T ss_pred eCch
Confidence 8764
No 95
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=97.73 E-value=0.00053 Score=57.64 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=72.0
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||.||+ -|.|+|.++ + +++.++.+.. . +..|+ .|...+.++...|++. +.|.+.++..
T Consensus 232 fSK~~g~------~GlRiG~~v--~-~~~l~~~l~~----~-~~~~~-~~~~~q~a~~~~l~~~---~~~~~~~~~~--- 290 (374)
T PRK02610 232 FSKAFRL------AAHRVGYAI--G-HPELIAVLEK----V-RLPYN-LPSFSQLAAQLALEHR---QELLAAIPEI--- 290 (374)
T ss_pred cchhccC------cccceeeee--c-CHHHHHHHHH----h-cCCCC-CCHHHHHHHHHHhcCH---HHHHHHHHHH---
Confidence 3899999 999999885 2 5555555443 2 23354 5667888888888864 4565554433
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~ 135 (142)
.+. |..+.+.|+++ ++ |... .+.|+|.++-+ +.+++..+| .+++|.+.+
T Consensus 291 ~~~-r~~l~~~L~~~--~~-~~~~-p~~g~f~~~~l~~~~~~~~~~~~l-~~~gi~v~~ 343 (374)
T PRK02610 291 LQE-RDRLYQALQEL--PQ-LRVW-PSAANFLYLRLSQDAALAALHQAL-KAQGTLVRH 343 (374)
T ss_pred HHH-HHHHHHHHHhC--CC-cEeC-CCcceEEEEeCCCCCCHHHHHHHH-HHCCEEEEe
Confidence 343 66777888765 33 6544 57799988755 557777757 678998764
No 96
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=97.73 E-value=0.00019 Score=59.80 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=72.7
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|.|+|.+.. +++.++.+.. .+..|+. |...+.++...|.++.. +.++...+++
T Consensus 213 SK~~~l------~GlRlG~~i~---~~~~~~~l~~-----~~~~~~~-~~~~~~~a~~~l~~~~~-----~~~~~~~~~~ 272 (354)
T PRK04635 213 SKAFAL------AGARCGFTLA---NEELIEILMR-----VIAPYPV-PLPVSEIATQALSEAGL-----ARMKFQVLDL 272 (354)
T ss_pred HHHhhh------hHHHHhhhhC---CHHHHHHHHh-----hcCCCCC-CHHHHHHHHHHHhcccH-----HHHHHHHHHH
Confidence 899999 9999999753 4555555432 2334544 33455667777776432 2345556677
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeee
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~ 134 (142)
+..|+.|.+.|++.+ + +...+. .|.|.++.+ +++++.++| ++++|.+.
T Consensus 273 ~~~r~~l~~~L~~~~--~-~~~~~~-~g~f~~~~~~~~~~~~~~l-~~~gv~v~ 321 (354)
T PRK04635 273 NAQGARLQAALSMYG--G-AKVLEG-NGNYVLAKFDDVDAVFKAL-WDAGIVAR 321 (354)
T ss_pred HHHHHHHHHHHHhCC--C-ceECCC-CCcEEEEECCCHHHHHHHH-HHCCEEEE
Confidence 878899999998763 2 555555 478888776 677888756 78899885
No 97
>KOG0256|consensus
Probab=97.73 E-value=0.0002 Score=62.87 Aligned_cols=94 Identities=20% Similarity=0.427 Sum_probs=72.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||-||| =|.|+|++. +.|++.+.+ .+.+.+ |...+..-+.+++..|+|.+..+.+..|. ..||
T Consensus 302 SKD~Gl------pGfRvGviY--S~ne~Vvsa----A~kmss--f~~vSs~tQ~~la~LLSD~~f~~~yl~en---~~Rl 364 (471)
T KOG0256|consen 302 SKDFGL------PGFRVGVIY--SNNEDVVSA----ATKMSS--FGLVSSQTQYLLASLLSDEEFTREYLREN---NKRL 364 (471)
T ss_pred ccccCC------CceEEEEEE--ecChHHHHH----HHHHhh--ccCCcHHHHHHHHHHhchHHHHHHHHHHH---HHHH
Confidence 899999 999999865 566555443 334433 77888888999999999977776666654 5688
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL 116 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl 116 (142)
+..-..+.++|++.|.| .++.+.|+||..-+
T Consensus 365 ~~rh~~~~~gLk~lgI~----cl~s~AGlF~wvDl 395 (471)
T KOG0256|consen 365 RIRHRYIVEGLKALGIP----CLKSNAGLFCWVDL 395 (471)
T ss_pred HHHHHHHHhhHHhcCCc----eeecCCeeEEEEEh
Confidence 87555666999999954 59999999999854
No 98
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=97.72 E-value=0.00025 Score=58.65 Aligned_cols=108 Identities=18% Similarity=0.133 Sum_probs=69.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||| -|-|+|.++. +++.++.+.. .+..|+.. .++...+.+.. +..-++.+++.
T Consensus 191 fSK~~~l------~GlRiGy~v~---~~~li~~l~~-----~~~~~~~~-----~~~~~~l~~~~----~~~~~~~~~~~ 247 (332)
T PRK06425 191 LTKILGI------PSLRIGYIAT---DDYNMKISRK-----ITEPWSVC-----DPAIDFIRSID----LDYVAKHSLDI 247 (332)
T ss_pred cHHhcCC------chhhheeeec---CHHHHHHHHH-----cCCCCccC-----HHHHHHHHHhh----hHHHHHHHHHH
Confidence 3899999 9999998654 4445544443 23334322 22333333221 22234567888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+++.|+.+.+.|++.+ |..+....|+|..+.+ +.+++.++|. +++|.+.+.
T Consensus 248 ~~~~r~~l~~~L~~~g----~~~~~~~~g~f~~~~~~~~~~~~~~l~-~~gi~v~~~ 299 (332)
T PRK06425 248 MENERSYLINNLEAMG----FRAAGDPSANFITFMIPDAHDFYSYLL-KNGILVRLL 299 (332)
T ss_pred HHHHHHHHHHHHHHCC----CEECCCCCceEEEEEcCCHHHHHHHHH-HCCeEEEEC
Confidence 8888999999998764 6655445688877766 5777777675 579988764
No 99
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=97.69 E-value=0.00034 Score=62.74 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC--------------------HHHHHHHhhhccceee
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN--------------------ATQVRRKLIHDRSLKL 133 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~--------------------~~qv~~~L~~~~~Iyl 133 (142)
++.|++++++.|..|++.| |. .+...+.+.|||.++-+. +.++..+|.++++|-+
T Consensus 404 ~~~~~~~~~~R~~~l~~~L---g~--~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v 478 (521)
T TIGR03801 404 KAETKDICRRREKLLFRGL---GL--PLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVL 478 (521)
T ss_pred HHHHHHHHHHHHHHHHHhc---CC--CCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEE
Confidence 3456778888888888887 32 244566789999999663 4567777999999999
Q ss_pred eCCC
Q psy16706 134 SNVE 137 (142)
Q Consensus 134 ~~~G 137 (142)
+|.+
T Consensus 479 ~PG~ 482 (521)
T TIGR03801 479 LPGG 482 (521)
T ss_pred eCch
Confidence 8764
No 100
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=97.69 E-value=0.00028 Score=58.37 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=68.4
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ .|.|+|.+.. +++.++.+.. . +..|+ .+..++.++...|.++ .| ++.+.++
T Consensus 221 ~SK~~g~------~GlRiG~~~~---~~~~~~~~~~----~-~~~~~-~~~~~~~~a~~~l~~~----~~---~~~~~~~ 278 (361)
T PRK00950 221 FSKVFGL------AGLRIGYGFV---PEWLIDYYMR----A-KTPFS-LTRLSQAAAIAALSDK----EY---IEKSIEH 278 (361)
T ss_pred ehHhhcC------chhhcchhcC---CHHHHHHHHH----h-cCCCC-CCHHHHHHHHHHhcCH----HH---HHHHHHH
Confidence 3899999 9999998753 3444444332 2 33444 4556777888888763 33 3345677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecC---CCHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTG---LNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~g---l~~~qv~~~L~~~~~Iyl~~ 135 (142)
++..|+.|.+.|. +...+ ..|+|+.+. .+.+++..+|. +++|++.+
T Consensus 279 ~~~~r~~l~~~l~-------~~~~~-~~~~~i~~~~~~~~~~~~~~~l~-~~gv~v~~ 327 (361)
T PRK00950 279 GIKSREYLYNELP-------FKVYP-SEANFVLVDVTPMTAKEFCEELL-KRGVIVRD 327 (361)
T ss_pred HHHHHHHHHhhcC-------eeECC-CcceEEEEECCCCCHHHHHHHHH-HCCEEEee
Confidence 7777888777664 33333 567787774 46788887784 67999875
No 101
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=97.61 E-value=0.00035 Score=58.94 Aligned_cols=107 Identities=11% Similarity=0.159 Sum_probs=71.8
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-||.||| -|.|+|.+.. +++.++.+. . .+..| ++|..++..+...|.+. .|.+++.. .
T Consensus 220 fSK~~~l------~GlRiG~~i~---~~~~~~~l~----~-~~~~~-~~~~~~q~aa~~~l~~~----~~~~~~~~---~ 277 (366)
T PRK01533 220 FSKAYGL------ASFRVGYAVG---HEELIEKLN----V-VRLPF-NVSSLAQKAATIAFGDD----EFIEEIVR---V 277 (366)
T ss_pred chHHhcC------hHHHHhHHhC---CHHHHHHHH----H-hcCCC-CcCHHHHHHHHHHhCCH----HHHHHHHH---H
Confidence 3899999 9999998753 455555543 2 23455 56778899999999863 56666543 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~ 135 (142)
+++.|+.+.+.+++.+ +..++. .|.|.++.+ +.+++...| .+++|.+.+
T Consensus 278 ~~~~r~~~~~~l~~~g----~~~~~~-~~nf~~~~~~~~~~~~~~l-~~~GI~Vr~ 327 (366)
T PRK01533 278 NTEGLRQYESFCKENE----IPFYQS-QTNFIFLPVENGGEIYEAC-AHAGFIIRP 327 (366)
T ss_pred HHHHHHHHHHHHHhCC----CccCCC-cCcEEEEeCCCHHHHHHHH-HHCCcEEcc
Confidence 3334555556666654 555555 577888877 667777767 579998754
No 102
>PRK06225 aspartate aminotransferase; Provisional
Probab=97.40 E-value=0.0036 Score=52.46 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=66.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ .|.|+|.+.+ +++..+.+.. .....|+ ++..++.++...|... .+|.+.+. +.+
T Consensus 224 SK~~g~------~G~RiG~i~~---~~~l~~~~~~----~~~~~~~-~~~~~~~~a~~~l~~~---~~~~~~~~---~~~ 283 (380)
T PRK06225 224 SKIFGM------AGLRIGAVVA---TPDLIEVVKS----IVINDLG-TNVIAQEAAIAGLKVK---DEWIDRIR---RTT 283 (380)
T ss_pred hhhcCC------ccceeEEEec---CHHHHHHHHH----HHhcccC-CCHHHHHHHHHHHhcc---hHHHHHHH---HHH
Confidence 899999 9999998864 4555555443 3333444 3445666666666542 35655544 444
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeec-----CCCHHHHHHHhhhccceeeeC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-----GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-----gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.+..+.+.|++... ..+...+ ..|.|..+ +++++++..+| .+++|++.+
T Consensus 284 ~~~~~~l~~~L~~~~~-~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~ 339 (380)
T PRK06225 284 FKNQKLIKEAVDEIEG-VFLPVYP-SHGNMMVIDISEAGIDPEDLVEYL-LERKIFVRQ 339 (380)
T ss_pred HHHHHHHHHHHHhCcC-CccccCC-CCCeEEEEEcccccCCHHHHHHHH-HHCCEEEcC
Confidence 4445556677776411 1133334 45666555 34677888768 478999876
No 103
>PRK08354 putative aminotransferase; Provisional
Probab=97.16 E-value=0.0033 Score=51.56 Aligned_cols=101 Identities=16% Similarity=0.278 Sum_probs=61.3
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||+ -|.|+|.++. ..+ .++. .+..|+..+ .+..++..++.+ .. +++..+++.
T Consensus 180 ~SK~~~l------~GlRiG~~v~------~~~----~l~~-~~~~~~~~~-~~~~~~~~~~~~-~~-----~~~~~~~~~ 235 (311)
T PRK08354 180 FTKSYGL------PGIRVGYVKG------FEE----AFRS-VRMPWSIGS-TGYAFLEFLIED-DF-----EHLRKTMPL 235 (311)
T ss_pred cHhhcCC------ccceeeeeee------hHH----HHHH-cCCCccCCH-HHHHHHHHHHHh-HH-----HHHHHHHHH
Confidence 3899999 9999998886 112 2222 234455444 556777777764 21 234444555
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+.+.|+.+.+.+ ..+.+.+||. ..+ +++++.+.| .+++|.+.+..
T Consensus 236 ~~~~~~~l~~~l----------~~~~~~~~~~-~~~~~~~~~~~~l-~~~gv~v~~g~ 281 (311)
T PRK08354 236 IWREKERFEKAL----------YVKSDANFFI-KDVGDAEKFVEFL-KRNGILVRDCT 281 (311)
T ss_pred HHHHHHHHHHhc----------CCCCCCcEEE-EECCCHHHHHHHH-HHCCeEEEecc
Confidence 555565554443 1344566666 555 667777757 67899998764
No 104
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0072 Score=51.67 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=77.5
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
.||.||| =|-|+|. +..+++.++.+.. +|.-|+.+- .++.++...|.|. +.++...++
T Consensus 210 fSKa~gL------AGlRlGy---~ia~~~~i~~l~~-----vr~p~~v~~-~a~~aa~aal~~~-------~~~~~~~~~ 267 (356)
T COG0079 210 FSKAFGL------AGLRVGY---AIANPELIAALNK-----VRPPFNVSS-PALAAAIAALRDA-------DYLEESVER 267 (356)
T ss_pred cHHhhhc------chhceee---ccCCHHHHHHHHH-----hcCCCCCCH-HHHHHHHHHcccH-------HHHHHHHHH
Confidence 3899999 9999998 3356666666553 577776654 6677777888875 566678888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC---HHHHHHHhhhccceeeeC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---ATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~---~~qv~~~L~~~~~Iyl~~ 135 (142)
+..-|+.|.++|++.+. ..-++.+ +=|.++.+. +..+.+.| .+++|.+-.
T Consensus 268 ~~~~r~rl~~~l~~~~~---~~v~pS~-aNFvlv~~~~~~~~~l~~~L-~~~giivR~ 320 (356)
T COG0079 268 IREERERLYAALKALGL---FGVFPSQ-ANFVLVRVPDAEAAALAEAL-LKKGILVRD 320 (356)
T ss_pred HHHHHHHHHHHHHhCCC---CeecCCC-CcEEEEECCCccHHHHHHHH-HHCCEEEEe
Confidence 99999999999998761 1234555 788888775 33566657 566887743
No 105
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=96.53 E-value=0.033 Score=48.87 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=74.9
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQK 94 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~ 94 (142)
|.|+|.+++ .++.++. +......+--.+|...+.+++.-+.+- .|.+-++.|+..++..|+.+.+.|++
T Consensus 304 glRlG~vv~---p~~~~~~----~~~~k~~~~~~~s~~~Q~~la~~l~~G----~~~~hl~~lR~~y~~rr~~l~~~L~~ 372 (459)
T COG1167 304 GLRLGYVVA---PPELIEK----LLRLKQAADLGPSSLSQAALAAFLLSG----HYDRHLRRLRREYARRRDALLEALAE 372 (459)
T ss_pred ccceeeeeC---CHHHHHH----HHHHHHHhcCCCChHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789998765 3333333 334444445566667767777777643 46777889999999999999999998
Q ss_pred cCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeCCCc
Q psy16706 95 EGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 95 ~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
...+ ......-..|||..+-| +...+..+. .+.+|-+.+-|+
T Consensus 373 ~~~~-~~~~~~p~gG~flwl~l~~~~~~~~l~~~a-~~~gv~i~~~g~ 418 (459)
T COG1167 373 YLPE-LATWTRPEGGLFLWLELPEGIDARELLAAA-LEKGVVVTPLGS 418 (459)
T ss_pred hCCC-CeeeecCCceEEEEEEcCCCCCHHHHHHHH-HHCCCEEEcCCc
Confidence 7652 24445556799999955 455666634 567777776554
No 106
>PRK10534 L-threonine aldolase; Provisional
Probab=96.38 E-value=0.063 Score=43.91 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC---HHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~---~~qv~~~L~~~~~Iyl~~~G 137 (142)
.+.|+.|.+.|++.| ++.++. .|.|.+.-++ .+++.+.| .+.+|.+.+..
T Consensus 253 ~~~r~~l~~~L~~~g----~~~~~~-~~nfv~~~~~~~~~~~~~~~l-~~~gi~v~~~~ 305 (333)
T PRK10534 253 HDNAAWLAEQLREAG----ADVMRQ-DTNMLFVRVGEEQAAALGEYM-RERNVLINASP 305 (333)
T ss_pred HHHHHHHHHHHHhCC----CccCCC-CceEEEEECCchhHHHHHHHH-HHcCeeecCCc
Confidence 335788889998876 666665 4889988664 56887745 78899997653
No 107
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=96.10 E-value=0.034 Score=46.15 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=54.6
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHH-hhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIR-AFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQ 93 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R-~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~ 93 (142)
|.|+|++.. +++.++.+ ....+ ..|+ +|..++..+...|+.-+ . ..+.++++++|+.+.+.|+
T Consensus 244 G~riG~~~~---~~~~~~~~----~~~~~~~~~~-~~~~~~~aa~aaL~~~~-~-------~~~~~~~~~~~~~~~~~l~ 307 (379)
T TIGR00707 244 GVPIGATLA---KEEVAEAF----TPGDHGSTFG-GNPLACAAALAVLEVIE-K-------ERLLENVKEKGDYFKERLE 307 (379)
T ss_pred CcccEEEEE---cHHHHhhh----cCCCCCCCCC-CCHHHHHHHHHHHHHHH-h-------hhHHHHHHHHHHHHHHHHH
Confidence 679997543 34444443 32222 3454 34456666666654111 1 1234444455555555554
Q ss_pred hcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCCC
Q psy16706 94 KEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 94 ~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+.+....+..+.. .|.|..+-+ +++++.++| .+.+|++.+.|
T Consensus 308 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~ 351 (379)
T TIGR00707 308 ELGKNYPNKEVRG-KGLMLGIELEAPCKDIVKKA-LEKGLLVNCAG 351 (379)
T ss_pred HHHhhCCCCcccc-CceEEEEEecCcHHHHHHHH-HHCCcEEeeCC
Confidence 4332222433333 466655444 467777767 67899998865
No 108
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=95.99 E-value=0.043 Score=46.60 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccccccccce-eecCC--CHHHHHHHhhhccceeeeC
Q psy16706 77 MADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMF-CYTGL--NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 77 m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF-~~~gl--~~~qv~~~L~~~~~Iyl~~ 135 (142)
.++++...|+.|.+.|++.| |+.++.+.+++ ..+|. +..++.++|.++++|++.+
T Consensus 301 ~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~ 358 (410)
T PRK13392 301 ERDAHQDRVAALKAKLNANG----IPVMPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQP 358 (410)
T ss_pred HHHHHHHHHHHHHHHHHHcC----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEee
Confidence 34566677777778888765 66566666665 33454 3457777687789999875
No 109
>PRK09064 5-aminolevulinate synthase; Validated
Probab=95.97 E-value=0.074 Score=44.95 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceee-cCC--CHHHHHHHhhhccceeeeC
Q psy16706 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCY-TGL--NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 75 ~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~-~gl--~~~qv~~~L~~~~~Iyl~~ 135 (142)
...++++...++.|.+.|++.| |+.++...+++.. +|- +..++.++|.++++|++.+
T Consensus 299 ~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~ 358 (407)
T PRK09064 299 NEERERHQERAAKLKAALDAAG----IPVMPNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQP 358 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEee
Confidence 3446778888888888888765 6666655554322 232 3556776676778999854
No 110
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=95.93 E-value=0.035 Score=47.04 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=65.1
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||. -|.|+|++.. +++..+.+.. .....+|+.+|.. +......|+- +.+ +.+.++.
T Consensus 254 sK~lg~------gg~~ig~~~~---~~~i~~~~~~---~~~~~t~~~~~~~-~aaa~aaL~~--~~~------~~l~~~~ 312 (396)
T PRK04073 254 GKALGG------GVFPISCVAA---NRDILGVFTP---GSHGSTFGGNPLA-CAVSIAALEV--LEE------EKLPERS 312 (396)
T ss_pred cccccC------CCCcceEEEE---cHHHHhhhcC---CCCCCCCCCCHHH-HHHHHHHHHH--HHh------cCHHHHH
Confidence 899999 8899998754 4444444321 1234667766644 4444444431 111 1233455
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~G 137 (142)
..+++.|.+.|++.+.+. +..+ ...|+|..+-+ +.+++..+| .+.+|++.+.|
T Consensus 313 ~~~~~~l~~~L~~l~~~~-i~~~-~~~g~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~ 367 (396)
T PRK04073 313 LELGEYFKEQLKEIDNPM-IKEV-RGRGLFIGVELNEPARPYCEAL-KEEGLLCKETH 367 (396)
T ss_pred HHHHHHHHHHHHhhcCCc-ccce-ecceEEEEEEecchHHHHHHHH-HHCCeEEecCC
Confidence 666777888887765332 2222 33477766645 456777767 46799997654
No 111
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=95.86 E-value=0.046 Score=47.97 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC------------HHHHHHHhhhccceeeeCCCccc
Q psy16706 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------------ATQVRRKLIHDRSLKLSNVEKCS 140 (142)
Q Consensus 75 ~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~------------~~qv~~~L~~~~~Iyl~~~Gri~ 140 (142)
+.+..|+.+ |+.|.+.|++.| |....-+.|+|+++-++ ...+...|-++.+|..+..|.++
T Consensus 291 ~~l~~~~~~-r~~l~~~L~~~G----~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~ 363 (431)
T cd00617 291 DYLRHRVEQ-VRYLGDRLDEAG----VPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFS 363 (431)
T ss_pred HHHHHHHHH-HHHHHHHHHHCC----CCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeeccee
Confidence 456667665 688889999887 77777799999998543 55666458899999999988765
No 112
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=95.67 E-value=0.22 Score=41.79 Aligned_cols=58 Identities=12% Similarity=0.335 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc-ccccceeecCC-----CHHHHHHHhhhccceeeeC
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHIT-DQIGMFCYTGL-----NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~-~q~GmF~~~gl-----~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.+...+++.+.|..+.+.|++.| |..+. .+.++|..+-+ +.+++.+ +.++++|++.+
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~v~v~~~~~~~~~~~~~~-~l~~~gI~v~~ 339 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKERG----FKVVSGGTDNHLVLVDLRPKGITGKAAED-ALEEAGITVNK 339 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----CeEeecCCCCeEEEEeCCccCCCHHHHHH-HHHHcCcEEcC
Confidence 455667778888888889998765 55543 34677776644 4566776 44789999953
No 113
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=95.66 E-value=0.036 Score=47.13 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=58.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.+|- |-|+|++.. +++..+.+.. ...-.+|+.+|. .+..+...|.- +. . ..+.+++
T Consensus 252 sK~l~~-------G~rig~vv~---~~~i~~~l~~---~~~~~t~~~~~~-~~~aa~a~L~~--~~---~---~~~~~~~ 309 (403)
T PRK05093 252 AKALGG-------GFPIGAMLT---TAEIASHFKV---GTHGSTYGGNPL-ACAVAEAVFDI--IN---T---PEVLEGV 309 (403)
T ss_pred cccccC-------CcceEEEEE---cHHHHhhcCC---CCCCCCCCCCHH-HHHHHHHHHHH--Hh---h---ccHHHHH
Confidence 666664 678888775 3334333321 112245654443 35555554421 10 0 1223555
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC------CHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
..+++.|.+.|++.+..-.+-.-....|+|..+.+ ...++..+|. +.+|++.+.|
T Consensus 310 ~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~-~~Gv~v~~~g 370 (403)
T PRK05093 310 KARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAA-EEGVMVLVAG 370 (403)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHH-HCCeEEecCC
Confidence 66666666777665422112122335588777655 2445666574 5689998866
No 114
>KOG0634|consensus
Probab=95.43 E-value=0.15 Score=45.41 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=81.2
Q ss_pred cccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 14 VGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQ 93 (142)
Q Consensus 14 YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~ 93 (142)
=|-|+|-++. ++-.++++.+.-.... +.|.-..+.||-..|.. -..+-|.+=+...+.-....|..+.++|.
T Consensus 299 PGlRlG~it~---~~~~l~ril~~ae~~t----~~pSg~sq~iv~a~l~~-wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~ 370 (472)
T KOG0634|consen 299 PGLRLGWITG---NSLFLKRILDLAEVAT----SGPSGFSQGIVYAMLKR-WGQEGFLRWIQHLRSSYTERRNALLSALD 370 (472)
T ss_pred CcceeEEeec---CHHHHHHHhhhcceee----cCcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889998776 4445566555444333 44888889999988874 22233444466677777777888889998
Q ss_pred hcCCCCCCccccccccceeecCCC------------HHHHHHHhhhccceeeeCCCccc
Q psy16706 94 KEGSNKPWNHITDQIGMFCYTGLN------------ATQVRRKLIHDRSLKLSNVEKCS 140 (142)
Q Consensus 94 ~~~~~~~w~~i~~q~GmF~~~gl~------------~~qv~~~L~~~~~Iyl~~~Gri~ 140 (142)
+.-...-..+.+-..|||..+-++ .++.-.....+++|+++..-++.
T Consensus 371 kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~ 429 (472)
T KOG0634|consen 371 KYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFM 429 (472)
T ss_pred HhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeE
Confidence 865544478888899999999775 22222224478999998876654
No 115
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=95.35 E-value=0.17 Score=41.20 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccce-eec---CCCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMF-CYT---GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF-~~~---gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
.+.+++++..+++.+.+.|.+.+ +..+....+++ +.. +.+++++..+|.++ +|.+.+
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~ 312 (349)
T cd06454 252 GPERRERLQENVRYLRRGLKELG----FPVGGSPSHIIPPLIGDDPAKAVAFSDALLER-GIYVQA 312 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcC----CcccCCCCCcEEEEeCCChHHHHHHHHHHHhC-CceEEE
Confidence 45678888998999989888765 44444434443 322 23567787768554 998865
No 116
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=95.22 E-value=0.34 Score=39.35 Aligned_cols=56 Identities=9% Similarity=0.181 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.+++++++.|+.|.+.|++.+ +...+. .|.|..+-+ +.+++.++| .+++|++.+
T Consensus 267 ~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-~~~gI~v~~ 326 (360)
T TIGR00858 267 EPWRREKLLALIARLRAGLEALG----FTLMPS-CTPIVPVIIGDNASALALAEEL-QQQGIFVGA 326 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC----CccCCC-CCCEEEEEeCCHHHHHHHHHHH-HHCCeeEee
Confidence 35667889998999999998764 554443 455554434 245677768 567999964
No 117
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=95.16 E-value=0.22 Score=42.03 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceee-cCC--CHHHHHHHhhhccceeeeC
Q psy16706 76 GMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCY-TGL--NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 76 ~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~-~gl--~~~qv~~~L~~~~~Iyl~~ 135 (142)
.+++++.++++.|.+.|++.| |+.++...+++.. +|- ...++.++|.++++|++.+
T Consensus 299 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~ 357 (402)
T TIGR01821 299 DLRRAHQENVKRLKNLLEALG----IPVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQP 357 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHcC----CCcCCCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEe
Confidence 344555566777777887765 5666665554322 232 2456777676778999864
No 118
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=95.13 E-value=0.11 Score=43.47 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=66.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.+|- |.|+|++.. .++..+.+.. ...-++|+.+| .++.++..+|..-+ ..+-++.++++.
T Consensus 233 sK~l~~-------G~~ig~~~~---~~~~~~~~~~---~~~~~t~~~~~-~~~~aa~a~l~~~~----~~~~~~~~~~~~ 294 (375)
T PRK04260 233 AKGLAN-------GVPVGAMLA---KSSLGGAFGY---GSHGSTFGGNK-LSMAAASATLDIML----TAGFLEQALENG 294 (375)
T ss_pred cccccC-------CcceEEEEE---cHHHHhhcCC---CCCCCCCCcCH-HHHHHHHHHHHHHH----hhHHHHHHHHHH
Confidence 675554 468888877 2333333221 11234555444 35777777775322 112234566666
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~G 137 (142)
...|+.|.+.+.+.+ .+..+.. .|+|..+.+ +++++.++| .+++|++.+.|
T Consensus 295 ~~~~~~l~~~~~~~~---~~~~~~~-~g~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~ 347 (375)
T PRK04260 295 NYLQEQLQKALQDKE---TVTTVRG-LGYMIGIETTADLSQLVEAA-RDKGLIVLTAG 347 (375)
T ss_pred HHHHHHHHHHHhhCC---CeeEEec-cceEEEEEecCcHHHHHHHH-HhCCCEEecCC
Confidence 666777766665542 2334443 788888865 477888867 57899998765
No 119
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=95.03 E-value=0.12 Score=45.45 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=70.0
Q ss_pred CcccccccCCCCccccccee----EEEeCCHHHHHHHHHHHHHH-HHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAF----SIVSADKDEAARILSQLKIL-IRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKG 76 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal----~vv~~~~~~~~~v~sql~~~-~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~ 76 (142)
||.|.+ -|-|+|.. .+++++++.++++....-.. ...+|+.++.+-+.-++.-|.+ .+...|.
T Consensus 251 ~D~~~~------Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e-~~~~~~~----- 318 (460)
T PRK13238 251 ADGLTM------SAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYE-GMDEDYL----- 318 (460)
T ss_pred CcEEEE------ecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHH-hhChHHH-----
Confidence 556666 56666533 45556666666554321000 1335655554433333333321 1111222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC------------HHHHHHHhhhccceeeeCCCccc
Q psy16706 77 MADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------------ATQVRRKLIHDRSLKLSNVEKCS 140 (142)
Q Consensus 77 m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~------------~~qv~~~L~~~~~Iyl~~~Gri~ 140 (142)
..|+. .|+.|.+.|++.| |..+.-+.|+|+++.++ ..+....|.++.+|..++.|-+.
T Consensus 319 -~~~~~-~~~~l~~~L~~~G----~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~ 388 (460)
T PRK13238 319 -AYRIG-QVEYLGEGLEEAG----VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLL 388 (460)
T ss_pred -HHHHH-HHHHHHHHHHHCC----CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeeccccee
Confidence 22333 3677888998866 77888899999998542 34466668899999999977543
No 120
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=94.65 E-value=0.099 Score=43.78 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=55.1
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||. |-|+|++.. +++..+.+ .......-.+|+.+|.. +..+...|+ +.++ ..+.+++
T Consensus 259 sK~l~~-------g~~~g~~~~---~~~~~~~~-~~~~~~~~~t~~~~~~~-~~a~~a~l~-------~l~~-~~~~~~~ 318 (413)
T cd00610 259 GKGLGG-------GLPLGAVLG---REEIMDAF-PAGPGLHGGTFGGNPLA-CAAALAVLE-------VLEE-EGLLENA 318 (413)
T ss_pred cccccC-------ccccEEEEE---cHHHHHhh-ccCCCCCCCCCCcCHHH-HHHHHHHHH-------HHHh-ccHHHHH
Confidence 677776 578998632 45555544 10111123466666643 333333332 1111 2344555
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC------------CHHHHHHHhhhccceeeeCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL------------NATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl------------~~~qv~~~L~~~~~Iyl~~~ 136 (142)
..+++.|.+.|++......+..-....|+|..+-+ ...++...| .+++|++.+.
T Consensus 319 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~v~~~ 384 (413)
T cd00610 319 AELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAA-LERGLLLRPS 384 (413)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHH-HHCCeEEeec
Confidence 55555555555544321011111234566655544 234566646 4679999875
No 121
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=94.59 E-value=0.43 Score=40.28 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=53.2
Q ss_pred cccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy16706 14 VGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLK-DNL 92 (142)
Q Consensus 14 YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~-~~l 92 (142)
-|-|.|.+. -+++.+ ..+....|..-.++|...+..+...|.+.. .+.++..++. |..++ +.+
T Consensus 207 aG~r~G~v~---~~~~li----~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~--------~~~~~~~l~~-r~~~~~~~l 270 (346)
T TIGR03576 207 DGPRGGLLA---GRKELV----DKIKSVGEQFGLEAQAPLLAAVVRALEEFE--------LSRIRDAFKR-KEEVYLRLF 270 (346)
T ss_pred cccceEEEE---eCHHHH----HHHHHhhcCcccCccHHHHHHHHHHHhhcc--------HHHHHHHHHH-HHHHHHHHH
Confidence 677888544 234433 345555665332223334555555565421 1344556665 44444 444
Q ss_pred HhcCCCCCCccccccccceeecCCC---H-HHHHHHhhhccceeeeC
Q psy16706 93 QKEGSNKPWNHITDQIGMFCYTGLN---A-TQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 93 ~~~~~~~~w~~i~~q~GmF~~~gl~---~-~qv~~~L~~~~~Iyl~~ 135 (142)
+. +...+.+.| |.+.-++ + +.+.+ |.++++|.+.+
T Consensus 271 ~~------~~~~~~~~~-f~~~~~~~~~~~~~~~~-ll~~~gV~v~~ 309 (346)
T TIGR03576 271 DK------LNVERTPTG-FVIKGVEEEKLIEIGLD-LLRNYGIITIT 309 (346)
T ss_pred Hh------CCCCcCCCe-EEEEeCCCCCHHHHHHH-HHHhCCEEEeC
Confidence 42 444455666 6777553 2 55555 77899999887
No 122
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=94.35 E-value=0.91 Score=39.76 Aligned_cols=114 Identities=21% Similarity=0.349 Sum_probs=79.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.|.| =|..+..+++ +|++..+++.+.++ |..-..|...|........++ -+.|++||.++ |
T Consensus 231 SKtFNl------aGL~~a~~Ii--~n~~lr~~~~~~l~---~~~~~~~n~lg~~A~~aAY~~---G~~WLd~L~~y---l 293 (388)
T COG1168 231 SKTFNL------AGLKCAYIII--SNRELRAKFLKRLK---RNGLHGPSALGIIATEAAYNQ---GEPWLDELLEY---L 293 (388)
T ss_pred cccccc------hhhhheeEEe--cCHHHHHHHHHHHH---HhcCCCCchHHHHHHHHHHHh---chHHHHHHHHH---H
Confidence 899999 8877766555 88888788777666 555677887877666666654 36899998876 5
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceee------cCCCHHHHHHHhhhccceeeeC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCY------TGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~------~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
+..|.-+.+.+.+.- | |-.+..-.|-|.. +|+++++..+-|.++-.|-+.+
T Consensus 294 ~~N~~~~~~~l~~~~-P--~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~ 350 (388)
T COG1168 294 KDNRDYVADFLNKHL-P--GVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSP 350 (388)
T ss_pred HHHHHHHHHHHHhhC-C--CcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccC
Confidence 556777777777653 2 4455555565432 4888888888788877776654
No 123
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=93.92 E-value=1.2 Score=36.01 Aligned_cols=110 Identities=17% Similarity=0.083 Sum_probs=55.7
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -| |+ ++..+++.++.+...... .-.+|+ ++...+..+...|.++. |. ...+++
T Consensus 195 sK~~~~------~~---g~--~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~a~~~~L~~~~----~~----~~~~~~ 253 (338)
T cd06502 195 SKGGGA------PV---GA--VVVGNRDFIARARRRRKQ-AGGGMR-QSGFLAAAGLAALENDL----WL----RRLRHD 253 (338)
T ss_pred cccCCC------cc---ce--EEECCHHHHHHHHHHHHH-hCCChh-hHHHHHHHHHHHhcCch----HH----HHHHHH
Confidence 688887 43 65 344566665555432111 011222 22233444555565432 32 233556
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHHHHHHHhhh------ccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NATQVRRKLIH------DRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~qv~~~L~~------~~~Iyl~~~G 137 (142)
...++.|.+.|++.+ +...+.+.|+++.-.- ..+.... |.+ +++|++.+.+
T Consensus 254 ~~~~~~l~~~L~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-l~~~l~~~~~~gi~~~~~~ 311 (338)
T cd06502 254 HEMARRLAEALEELG----GLESEVQTNIVLLDPVEANAVFVE-LSKEAIERRGEGVLFYAWG 311 (338)
T ss_pred HHHHHHHHHHHHhcC----CCcccccCCeEEEecCCccHHHHH-HHHHHHHhhhCCEEEEecC
Confidence 666777778888776 3455667777654321 2233333 432 4677776543
No 124
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=93.72 E-value=0.58 Score=38.53 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeec-C--CCHHHHHHHhhhccceeeeC
Q psy16706 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-G--LNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 75 ~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-g--l~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.+.+++.+.++.|.+.|+..+ +..++.+.+|+.+. + .+++++..+|. +++|.+.+
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gI~v~~ 348 (385)
T PRK05958 290 PERRERLAALIARLRAGLRALG----FQLMDSQSAIQPLIVGDNERALALAAALQ-EQGFWVGA 348 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCcCCCCCCEEEEEeCCHHHHHHHHHHHH-HCCceEec
Confidence 3457788888888888888765 55555555554433 1 23456777684 67999975
No 125
>PLN02822 serine palmitoyltransferase
Probab=93.60 E-value=0.41 Score=42.26 Aligned_cols=58 Identities=7% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC------------HHHHHHHhhhccceeeeCC
Q psy16706 76 GMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------------ATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 76 ~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~------------~~qv~~~L~~~~~Iyl~~~ 136 (142)
.++++++++++.|.+.|++.. | |.......+++.++-++ .+++.++|.++++|++++.
T Consensus 368 ~~~~~l~~~~~~l~~~L~~~~--g-~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~ 437 (481)
T PLN02822 368 SVLAKLKENIALLHKGLSDIP--G-LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVS 437 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--C-cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEee
Confidence 456667776777777776542 1 55444456666666552 1456666877899999964
No 126
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=93.50 E-value=1.4 Score=37.37 Aligned_cols=57 Identities=14% Similarity=0.341 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc-cccceeecCC-----CHHHHHHHhhhccceeee
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHITD-QIGMFCYTGL-----NATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~-q~GmF~~~gl-----~~~qv~~~L~~~~~Iyl~ 134 (142)
.++.+.+++.+.|+.+.+.|++.| |...+. ..+.|..+-+ +.+++...| ++++|.+.
T Consensus 280 ~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L-~~~GI~v~ 342 (416)
T PRK00011 280 EFKEYAQQVVKNAKALAEALAERG----FRVVSGGTDNHLVLVDLRSKGLTGKEAEAAL-EEANITVN 342 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCC----CeeeecCCCCeEEEEeCcccCCCHHHHHHHH-HHcCcEEc
Confidence 467778888999999999998765 443331 1224444433 567787756 67888875
No 127
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=93.39 E-value=0.75 Score=39.03 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhccceeeeC
Q psy16706 79 DRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 79 ~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iyl~~ 135 (142)
.++...+..|.+.|++.+ |+.+..+..|+ .+-+ +..++.++|.++++|++.+
T Consensus 302 ~~~~~~~~~l~~~L~~~g----~~~~~~~~~i~-~v~~~~~~~~~~l~~~L~~~~Gi~v~~ 357 (406)
T PRK13393 302 ERHQDRVARLRARLDKAG----IPHLPNPSHIV-PVMVGDPVLCKQISDELLDRYGIYVQP 357 (406)
T ss_pred HHHHHHHHHHHHHHHHcC----CCcCCCCCCeE-EEEeCCHHHHHHHHHHHHHhCCEEEEe
Confidence 456666777777887654 55555544443 3323 2356766686668999853
No 128
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=93.26 E-value=0.34 Score=40.44 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=52.8
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQK 94 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~ 94 (142)
|-|+|++.. +++.++.+.. .....+|+.+| .++..+...|+..+- ..+.+.+..+.++ .|+.|.+.+.+
T Consensus 256 G~rig~~~~---~~~~~~~~~~---~~~~~t~~~~~-~~~~aa~~~l~~~~~-~~~~~~~~~~~~~---~~~~l~~~~~~ 324 (396)
T PRK02627 256 GVPIGAVLA---KEKVADVFTP---GDHGSTFGGNP-LACAAALAVIEIIEE-EGLLENAAEVGEY---LRAKLRELLEK 324 (396)
T ss_pred CcccEEEEE---cHHHHhccCC---CCCCCCCCCCH-HHHHHHHHHHHHHhh-ccHHHHHHHHHHH---HHHHHHHHHHh
Confidence 578888654 3334433321 11235665554 466776666653221 2233333333322 23333322222
Q ss_pred cCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCCC
Q psy16706 95 EGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 95 ~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~G 137 (142)
. |. +..+ ...|+|..+-+ +.+++..+|.+ .+|++.+.|
T Consensus 325 ~--~~-~~~~-~~~g~~~~i~~~~~~~~~~~~l~~-~Gv~v~~~~ 364 (396)
T PRK02627 325 Y--PG-IKEV-RGLGLMIGIELDRPAAEIVKKALE-KGLLINVTG 364 (396)
T ss_pred C--CC-eeee-ccCcEEEEEEecCcHHHHHHHHHH-CCeEEeecC
Confidence 2 21 2222 24577766644 56777776855 499998754
No 129
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=93.06 E-value=0.57 Score=39.10 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=55.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHH-hhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIR-AFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R-~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||.||- |-|+|++. + +++..+.+.. ..+ .+|+.+| .++..+...|+.-+ ...|.+ .++++
T Consensus 235 sK~l~~-------G~~ig~v~--~-~~~~~~~~~~----~~~~~t~~~~~-~~~aaa~a~l~~~~-~~~~~~---~~~~~ 295 (377)
T PRK02936 235 AKGLGN-------GIPVGAMI--G-KKELGTAFGP----GSHGSTFGGNP-LAMAAAKEVLQVIK-QPSFLE---EVQEK 295 (377)
T ss_pred cccccC-------CCccEEEE--E-cHHHHhhccC----CCCCCCCCCCH-HHHHHHHHHHHHHH-hccHHH---HHHHH
Confidence 676665 46888643 2 4445444421 122 3455444 55665555554211 122332 33333
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC--HHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN--ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~--~~qv~~~L~~~~~Iyl~~~G 137 (142)
...+|+.|.+.+.+. +. ...+ ...|+|..+-+. .+.+...| .+.+|++.+.|
T Consensus 296 ~~~l~~~L~~~~~~~--~~-~~~v-~~~g~~~~i~~~~~~~~~~~~l-~~~gv~v~~~g 349 (377)
T PRK02936 296 GEYFLQKLQEELEHL--EC-VKNI-RGKGLMIGIECTEEVAPVIEQL-REEGLLVLSAG 349 (377)
T ss_pred HHHHHHHHHHHHhhC--Cc-EEeE-eecceEEEEEecchHHHHHHHH-HHCCeEEecCC
Confidence 334444444333222 21 1112 246777666663 55666646 67899999876
No 130
>PLN02483 serine palmitoyltransferase
Probab=92.98 E-value=0.35 Score=42.80 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc----eeecCCCHHHHHHHhhhccceeeeCC
Q psy16706 76 GMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGM----FCYTGLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 76 ~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~Gm----F~~~gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
.+.+++...|+.|.+.|++.| +..+..+.+. +.+.+....++.++|. +.+|.+++.
T Consensus 369 ~~~~~l~~~~~~l~~~L~~~G----~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll-~~GI~v~~~ 428 (489)
T PLN02483 369 QKLAQIRENSNFFRSELQKMG----FEVLGDNDSPVMPIMLYNPAKIPAFSRECL-KQNVAVVVV 428 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHCC----CcccCCCCCCEEEEEECCHHHHHHHHHHHH-HCCcEEeee
Confidence 445677777888888888775 4433333222 2222234446666575 569999853
No 131
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=92.91 E-value=0.51 Score=39.10 Aligned_cols=56 Identities=11% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeec-C--CCHHHHHHHhhhccceeeeC
Q psy16706 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-G--LNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 75 ~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-g--l~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.++.+++++|+.+.+.|++.+ |+.++...++|... + .+.+++..+|.++ +|.+.+
T Consensus 296 ~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~v~~ 354 (397)
T PRK06939 296 DELRDRLWENARYFREGMTAAG----FTLGPGEHPIIPVMLGDAKLAQEFADRLLEE-GVYVIG 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC----CCcCCCCCCEEEEEECCHHHHHHHHHHHHHC-CceEee
Confidence 4677888888888888888764 55555455665332 2 2456777768665 898864
No 132
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=92.87 E-value=0.65 Score=38.54 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeec-CC--CHHHHHHHhhhccceeee
Q psy16706 77 MADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-GL--NATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 77 m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-gl--~~~qv~~~L~~~~~Iyl~ 134 (142)
+.+++.++|+.|.+.|++.+ |..+..+..++... +- +.+++..+|.++ +|++.
T Consensus 286 ~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gi~v~ 341 (385)
T TIGR01825 286 LMERLWDNTRFFKAGLGKLG----YDTGGSETPITPVVIGDEKAAQEFSRRLFDE-GIFAQ 341 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcC----CCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CcEEc
Confidence 45666777888888888765 55554444444332 21 346676668655 99874
No 133
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=92.28 E-value=3.4 Score=33.49 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc---cccceeecC------CCHHHHHHHhhhccceeeeCCC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITD---QIGMFCYTG------LNATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~---q~GmF~~~g------l~~~qv~~~L~~~~~Iyl~~~G 137 (142)
++...++++..|+.+.+.|++.+ |..+.. ..|++..+- .+++++..+| .+.+|.+.+.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~i~~~~ 324 (355)
T TIGR03301 257 VPARIARYRRNRELLVDGLRALG----FQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQEL-KERGFVIYPGK 324 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----CeeecCCCCCCCcEEEEECCCCCcchHHHHHHHH-HHCCEEEECCc
Confidence 55666677887888888888765 543322 356554432 3446777767 56789887654
No 134
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=91.91 E-value=1.3 Score=37.13 Aligned_cols=58 Identities=9% Similarity=0.184 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc-----cccceeec--CCCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITD-----QIGMFCYT--GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~-----q~GmF~~~--gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.+.+++.+.++.|.+.|++.. + |..+.. +.|++++. +.+.+++.+.| ++++|++..
T Consensus 293 ~~~~~~~~~~l~~~l~~~l~~~~--g-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~ 357 (403)
T TIGR01979 293 LENIEAHEHELTAYALERLGEIP--G-LRIYGPRDAEDRGGIISFNVEGVHPHDVGTIL-DEEGIAVRS 357 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--C-EEEeCCCCccccCceEEEEeCCcCHHHHHHHH-hhCCEEEcc
Confidence 57788999999999998887652 2 555542 36776554 56677888756 688998854
No 135
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=91.79 E-value=0.67 Score=38.90 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=53.8
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.++. -+.|+|++.+ +++..+.+... ....+|+.+| ..+.++..+|.- +.+ + ...+++
T Consensus 246 sK~l~~------g~~~ig~v~~---~~~~~~~~~~~---~~~~t~~~~~-~~~~aa~~~l~~--i~~---~---~~~~~~ 304 (400)
T PTZ00125 246 GKALSG------GLYPISAVLA---NDDVMLVIKPG---EHGSTYGGNP-LACAVAVEALEV--LKE---E---KLAENA 304 (400)
T ss_pred cccccC------CCcCcEEEEE---cHHHHhhccCC---CCCCCCCcCH-HHHHHHHHHHHH--HHh---c---CHHHHH
Confidence 677766 4458886543 44454444321 1223555555 345555444421 110 0 112333
Q ss_pred HHHHHHHHHHHHhc-CCCCCCccccccccceeecCC------CHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKE-GSNKPWNHITDQIGMFCYTGL------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~-~~~~~w~~i~~q~GmF~~~gl------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
.++++.+.+.|++. +.. .+..-....|+|..+.+ +..++..+|. +.+|++.+.+
T Consensus 305 ~~~~~~l~~~l~~l~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~ 365 (400)
T PTZ00125 305 QRLGEVFRDGLKELLKKS-PWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLK-ENGLLAKPTH 365 (400)
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEecccEEEEEEEccCcchHHHHHHHHHH-HCCeEEeecC
Confidence 33344444444432 111 12211345677766644 2355666574 6799998755
No 136
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=91.16 E-value=1.3 Score=36.86 Aligned_cols=57 Identities=11% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeec--C-CCHHHHHHHhhhccceeee
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT--G-LNATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~--g-l~~~qv~~~L~~~~~Iyl~ 134 (142)
+.+.+++++...++.+.+.|++.+ +...+.+.+++... + .+.+++..+|. +.+|++.
T Consensus 290 ~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~i~~~~~~~~~~l~~~L~-~~gI~v~ 349 (393)
T TIGR01822 290 ASNELRDRLWANTRYFRERMEAAG----FDIKPADHPIIPVMLYDAVLAQRFARRLL-EEGIYVT 349 (393)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcC----CCCCCCCCCEEEEEeCCHHHHHHHHHHHH-HCCeeEe
Confidence 456788899998888888888764 44333333333222 1 23567777675 4589986
No 137
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=91.02 E-value=0.9 Score=38.22 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=56.1
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQK 94 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~ 94 (142)
|.|+|++.. +++..+.+.. .....+|+.+| .++.++...|.--+ .. ...+++.++++.|.+.|++
T Consensus 257 G~~ig~~~~---~~~~~~~~~~---~~~~~t~~~~~-~~~aaa~a~l~~~~-~~-------~~~~~~~~~~~~l~~~L~~ 321 (398)
T PRK03244 257 GLPIGACLA---FGPAADLLTP---GLHGSTFGGNP-VACAAALAVLDTIA-SE-------GLLENAERLGEQLRAGIEA 321 (398)
T ss_pred CcccEEEEE---cHHHHhhccC---CCCcCCCCCCH-HHHHHHHHHHHHHH-hc-------cHHHHHHHHHHHHHHHHHh
Confidence 468888765 3334443321 12345677666 44555555544100 11 2334555556666777776
Q ss_pred cCCCCCCccccccccceeecCCC---HHHHHHHhhhccceeeeCCC
Q psy16706 95 EGSNKPWNHITDQIGMFCYTGLN---ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 95 ~~~~~~w~~i~~q~GmF~~~gl~---~~qv~~~L~~~~~Iyl~~~G 137 (142)
.+.|. ... ....|+|..+-+. .+.+..+| .+.+|++.+.+
T Consensus 322 ~~~~~-~~~-v~g~g~~~~i~~~~~~~~~~~~~l-~~~Gv~~~~~~ 364 (398)
T PRK03244 322 LGHPL-VDH-VRGRGLLLGIVLTAPVAKAVEAAA-REAGFLVNAVA 364 (398)
T ss_pred cCCCc-eee-EeeccEEEEEEEeccHHHHHHHHH-HHCCeEEeecC
Confidence 64321 111 2246788777663 45566656 56899987654
No 138
>PRK02948 cysteine desulfurase; Provisional
Probab=90.78 E-value=0.45 Score=39.67 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=49.9
Q ss_pred hcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc------ccc--eeecCC
Q psy16706 45 FYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQ------IGM--FCYTGL 116 (142)
Q Consensus 45 ~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q------~Gm--F~~~gl 116 (142)
..++|+..+..-....|.+ + .++++..++++...|..|.+.|++.+. +..+.+ .++ |...++
T Consensus 232 ~~~t~~~~~~~a~~~al~~--~----~~~~~~~~~~~~~~~~~l~~~L~~~~~----~v~~~~~~~~~~~~i~~~~~~~~ 301 (381)
T PRK02948 232 RPGTVNVPGIAAFLTAAEN--I----LKNMQEESLRFKELRSYFLEQIQTLPL----PIEVEGHSTSCLPHIIGVTIKGI 301 (381)
T ss_pred CCCCccHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHhcCCC----CEEEeCCCccCcCCEEEEEeCCC
Confidence 3456666665555555532 1 134667789999999999999988762 222211 223 233466
Q ss_pred CHHHHHHHhhhccceeeeC
Q psy16706 117 NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 117 ~~~qv~~~L~~~~~Iyl~~ 135 (142)
+++++..+| .+++|++..
T Consensus 302 ~~~~~~~~l-~~~gI~v~~ 319 (381)
T PRK02948 302 EGQYTMLEC-NRRGIAIST 319 (381)
T ss_pred CHHHHHHhc-ccCCEEEEc
Confidence 777777657 678999874
No 139
>KOG0633|consensus
Probab=90.61 E-value=0.3 Score=41.50 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=54.3
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||| =|-|+|.-..-. .+.++...++ +- -|....|++.+-..|+|..+++ ++..++-|
T Consensus 226 SKsfGL------AGiRvG~~~~~~----~ia~iln~~K----aP-YNiS~~~s~~AL~Als~~n~kk-----me~~rdai 285 (375)
T KOG0633|consen 226 SKSFGL------AGIRVGYGAFPL----SIAEILNRAK----AP-YNISVAGSVAALAALSDSNGKK-----MEDVRDAI 285 (375)
T ss_pred hhhcCc------ceeEeecccccH----HHHHHHHhcc----CC-ccccchhHHHHHHhcCcccchH-----HHHHHHHH
Confidence 899999 999999765422 2222222111 11 2455678888888999877654 57889999
Q ss_pred HHHHHHHHHHHHhcCCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNK 99 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~ 99 (142)
.+-|..|+.+|.+...=+
T Consensus 286 v~er~RL~keLt~v~~~~ 303 (375)
T KOG0633|consen 286 VRERERLFKELTEVPFLN 303 (375)
T ss_pred HHHHHHHHHHhhcCcccc
Confidence 999999999998776433
No 140
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=90.16 E-value=2.5 Score=36.67 Aligned_cols=115 Identities=16% Similarity=0.210 Sum_probs=72.3
Q ss_pred cccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHH-HHHHHHHH
Q psy16706 5 YGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVK-GMADRIIS 83 (142)
Q Consensus 5 fgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~-~m~~ri~~ 83 (142)
.|| =|+|+|.. ..|++.+..+.+ |..++ -=.|.+.|+.|++..+..-+|...=.+=++ .+++|.+.
T Consensus 250 ~GL------PG~R~GIi---Iane~viqaitn-mn~ii---sLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~ 316 (417)
T COG3977 250 LGL------PGSRCGII---IANEKVIQAITN-MNGII---SLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQT 316 (417)
T ss_pred cCC------CCcceeEE---EccHHHHHHHHh-cccee---eecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHH
Confidence 588 89999954 357666666655 33222 235778999999999998787654222222 34555554
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccceeec-----CCCHHHHHHHhhhccceeeeCCC
Q psy16706 84 MRQSLKDNLQKEGSNKPWNHITDQIGMFCYT-----GLNATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 84 ~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~-----gl~~~qv~~~L~~~~~Iyl~~~G 137 (142)
.-..|..+| +...|-.=.-..-.|+.+ |++.+++-++| ++.+|-++|..
T Consensus 317 ~~~~l~~~l----p~~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~L-Ka~Gvl~VPG~ 370 (417)
T COG3977 317 TIAILRRYL----PEYRCLIHKPEGAIFLWLWFKDLPITTEELYQRL-KARGVLMVPGH 370 (417)
T ss_pred HHHHHHHhc----CccceeeecCCcceeehhhhccCCCCHHHHHHHH-HhCeEEEeccc
Confidence 333333333 233354434444566655 88999988878 78899988864
No 141
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=89.71 E-value=0.96 Score=38.62 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=57.4
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHH-hhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIR-AFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R-~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||.+|= |.|+|++.. +++..+.+. .... .+|+.+| .++..+..+|. .+. -..+.++
T Consensus 251 sK~l~g-------G~~ig~~~~---~~~~~~~~~----~~~~~~t~~~~p-l~~aaa~a~l~--~l~------~~~~~~~ 307 (406)
T PRK12381 251 AKALGG-------GFPIGAMLT---TEKCASVMT----VGTHGTTYGGNP-LASAVAGKVLE--LIN------TPEMLNG 307 (406)
T ss_pred hhhhhC-------CCceEEEEE---cHHHHhhcC----CCCCCCCCCCCH-HHHHHHHHHHH--HHh------hccHHHH
Confidence 566654 568887664 344443332 2222 3565455 34555555442 111 1135566
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC------HHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~------~~qv~~~L~~~~~Iyl~~~G 137 (142)
+.++++.|.+.|++.+....+---....|++.-+-+. ..++...| .+.+|++.+.|
T Consensus 308 ~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l-~~~Gv~v~~~g 369 (406)
T PRK12381 308 VKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEA-AKAGVMVLIAG 369 (406)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHH-HHCCcEEeeCC
Confidence 6666766777776654221111112345776555442 35666645 67899997655
No 142
>PLN02721 threonine aldolase
Probab=89.60 E-value=8.3 Score=31.32 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCCCCc--cccccccceeec-C----CCHHHHHHHhhhccceeeeCCC
Q psy16706 83 SMRQSLKDNLQKEGSNKPWN--HITDQIGMFCYT-G----LNATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 83 ~~R~~L~~~l~~~~~~~~w~--~i~~q~GmF~~~-g----l~~~qv~~~L~~~~~Iyl~~~G 137 (142)
..++.+.+.|++.. + +. ....+.||+.+. + .+.+++.++| .+++|++.+.+
T Consensus 265 ~~~~~l~~~L~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~v~~~~ 322 (353)
T PLN02721 265 KKAKLLAEGLNQIK--G-LRVNVAAVETNIVYFDITDGSRITAEKLCKSL-EEHGVLLMPGN 322 (353)
T ss_pred HHHHHHHHHHHhCC--C-cEEecCCccceEEEEEccCCccccHHHHHHHH-HhCCcEEecCC
Confidence 34667778887652 1 32 223344443322 2 4577888878 48899998765
No 143
>KOG0257|consensus
Probab=89.19 E-value=1.6 Score=38.67 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=60.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||+ -|=|+|=++. ++.........-+.++++ .+-|..+|...+--+.-+.+...=...+.+|.+-+
T Consensus 244 gKtf~~------TGWrlGW~ig---p~~L~~~~~~vh~~~~~~--~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y 312 (420)
T KOG0257|consen 244 GKTFGV------TGWRLGWAIG---PKHLYSALFPVHQNFVFT--CPTPIQEASAAAFALELACLQPGGSYFITELVKEY 312 (420)
T ss_pred cceeee------eeeeeeeeec---hHHhhhhHHHHhhccccc--cCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHH
Confidence 799999 9999998877 333333332222222221 12233444433322221100000013334477778
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN 117 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~ 117 (142)
++.|..|.+.|.++| +..+.-+.++|...-++
T Consensus 313 ~~krdil~k~L~~lg----~~v~~p~gayyl~adfs 344 (420)
T KOG0257|consen 313 KEKRDILAKALEELG----LKVTGPEGAYYLWADFS 344 (420)
T ss_pred HHHHHHHHHHHHhcC----CccccCCCceEEEEecc
Confidence 888999999999997 78889999999988776
No 144
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=88.19 E-value=4.6 Score=33.88 Aligned_cols=59 Identities=8% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccc-cccccceeec--CCCHHHHHHHhhhccceeeeCC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHI-TDQIGMFCYT--GLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i-~~q~GmF~~~--gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
++.+.+++..+++.|.+.|++.. + +..+ ..+.+++++. +++++++..+| .+++|.+...
T Consensus 291 ~~~i~~~~~~l~~~l~~~l~~l~--g-~~~~~~~~~~i~~~~~~~~~~~~l~~~L-~~~gI~v~~g 352 (398)
T TIGR03392 291 IAAAEAWSVSLADLAEERLAQLP--G-FRSFRCPGSSLLAFDFAGVHHSDLAALL-AESGIALRAG 352 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--C-eEEeCCCCCcEEEEEeCCcCHHHHHHHH-HhCCEEEecC
Confidence 34677888888888888887642 1 3322 1345666543 67788898877 5789988643
No 145
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=88.17 E-value=2.3 Score=35.69 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=52.8
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHH-hhcCCCCchHHHHHHHHhCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIR-AFYSSPPIHGARIVQEILGDPKL-KSQWLTEVKGMADRIISMRQSLKDNL 92 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R-~~~S~pp~~Ga~iv~~IL~dp~L-~~~W~~El~~m~~ri~~~R~~L~~~l 92 (142)
|-|+|++.. + ++.++.+. ...+ .+|+.+| .++..+...|. .+ ...+.+.+..+.+++.+.++.+.+.
T Consensus 249 G~~ig~~~~--~-~~~~~~~~----~~~~~~t~~~~~-~~~aaa~a~l~--~l~~~~~~~~~~~~~~~l~~~l~~l~~~- 317 (389)
T PRK01278 249 GFPLGACLA--T-EEAAKGMT----PGTHGSTYGGNP-LAMAVGNAVLD--VILAPGFLDNVQRMGLYLKQKLEGLVDR- 317 (389)
T ss_pred CcceEEEEE--c-HHHHhccC----CCCCCCCCCccH-HHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 568888543 3 33333332 1112 3555544 33444433332 11 1234556666666666655444321
Q ss_pred HhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCCC
Q psy16706 93 QKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 93 ~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~G 137 (142)
.|+-+..+ ...|+|..+-+ +.+++.++|.++ +|++.+.|
T Consensus 318 ----~~~~~~~v-~g~G~~~~i~~~~~~~~~~~~l~~~-GV~~~p~~ 358 (389)
T PRK01278 318 ----FPDVIEEV-RGKGLLLGLKCVVPNRDLVQALRDE-GLLTVGAG 358 (389)
T ss_pred ----CCCceeeE-ecccEEEEEEEecCHHHHHHHHHHC-CeEEeecC
Confidence 12112222 33566655433 567777768654 99998865
No 146
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=87.42 E-value=2.8 Score=35.93 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceee--c--CCCHHHHHHHhhhcccee
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCY--T--GLNATQVRRKLIHDRSLK 132 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~--~--gl~~~qv~~~L~~~~~Iy 132 (142)
.++.+++++..+|+.|.+.|++.+. +..+ +.++|.+ + +.+.+++.++|. +++|.
T Consensus 349 g~~~~~~~~~~~~~~l~~~L~~~~g---~~~~--~~~~~~~~~v~~~~~~~~~~~~L~-~~gi~ 406 (447)
T PRK00451 349 GLRELAEQNHQKAHYLAERLAEIGG---VELF--DGPFFNEFVVRLPKPAEEVNEALL-EKGIL 406 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC---EEec--CCCeEEEEEEecCCCHHHHHHHHH-hcCCC
Confidence 4677889999999999999987641 4433 4455543 2 456788888785 45443
No 147
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=86.84 E-value=9 Score=31.48 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeeeCC
Q psy16706 72 TEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 72 ~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
..++...+++.+++..|.+.|++.+.. ..+.....+.++-.-+.+++.++|. +.+|++...
T Consensus 284 ~g~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~v~~~~~~~~~v~~~L~-~~gi~v~~~ 344 (373)
T TIGR03812 284 EGYRKIVAECMENTRYLVEELKKIGFE---PVIEPVLNIVAFEVDDPEEVRKKLR-DRGWYVSVT 344 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCe---EEcCCCceEEEEEeCCHHHHHHHHH-HCCceeccC
Confidence 345677889999999999999887521 1223334443332224567777684 568887543
No 148
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=86.60 E-value=16 Score=29.83 Aligned_cols=58 Identities=14% Similarity=0.313 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc---cccceeec----CCCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITD---QIGMFCYT----GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~---q~GmF~~~----gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.+.++....+..+.+.|++.+ |..+.. ..|+++++ +.+.+++.++|.++++|++.+
T Consensus 257 ~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~ 321 (356)
T cd06451 257 LENRWARHRRLAKALREGLEALG----LKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAG 321 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----CeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEec
Confidence 34556666777777788887764 444432 23444333 456788887787667999875
No 149
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=86.58 E-value=1.5 Score=37.34 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=53.3
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhC---ChhhHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG---DPKLKSQWLTEVKGMA 78 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~---dp~L~~~W~~El~~m~ 78 (142)
||.+|- |.|+|++.. +++.++.+...-....=++|+.+|. ++..+..+|. +++ |.+.+..+.
T Consensus 262 sK~l~~-------G~pig~v~~---~~~i~~~~~~~~~~~~~~T~~~~~~-~~aaa~a~l~~~~~~~----~~~~~~~~~ 326 (423)
T TIGR00713 262 GKIIGG-------GLPVGAFGG---RREIMERLAPEGPVYQAGTLSGNPL-AMAAGLATLKLLDEEG----VYTELDELA 326 (423)
T ss_pred hhhhcC-------CCceeeeeE---HHHHHHhhCcCCCeeeccCCCCCHH-HHHHHHHHHHHHhccc----HHHHHHHHH
Confidence 566654 568887654 4444444432100111245555553 3444333343 332 444444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC--------------HH---HHHHHhhhccceeeeCCC
Q psy16706 79 DRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN--------------AT---QVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 79 ~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~--------------~~---qv~~~L~~~~~Iyl~~~G 137 (142)
++ .|+.|.+.+++.+ +..-....|.|..+-+. .+ ++...|. +++|++.+.+
T Consensus 327 ~~---~~~~l~~~~~~~~----~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~ 394 (423)
T TIGR00713 327 KR---LAEGLSEVLEDTG----IPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPSQ 394 (423)
T ss_pred HH---HHHHHHHHHHhcC----CCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecCC
Confidence 43 4556665565554 22222334544443111 11 4554475 5789987543
No 150
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=86.43 E-value=4.1 Score=33.98 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc-----ccccceeec--CCCHHHHHHHhhhccceeee
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHIT-----DQIGMFCYT--GLNATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~-----~q~GmF~~~--gl~~~qv~~~L~~~~~Iyl~ 134 (142)
.++..++|+...++.|.+.|++.+. +..+. .+.+++.+. +.+++++.++| ++++|.+.
T Consensus 291 ~~~~~~~~~~~l~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~ 355 (397)
T TIGR01976 291 SFQAIDAYENRLAEYLLVGLSDLPG---VTLYGVARLAARVPTVSFTVHGLPPQRVVRRL-ADQGIDAW 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCccCCCceEEEEeCCcCHHHHHHHH-HHCCeEEE
Confidence 3678888999999999998887541 33332 256665543 45677788778 66799875
No 151
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=86.01 E-value=3.6 Score=35.54 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=54.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHH-hhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIR-AFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R-~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||.+|- |.|+|++.. + ++..+.+.. ..+ .+|+.+| .++.++..+|. .+.+ ....++
T Consensus 255 ~K~l~~-------G~piga~~~--~-~~~~~~~~~----~~~~~t~~~~p-~~~aaa~a~L~--~~~~------~~l~~~ 311 (408)
T PRK04612 255 AKALGG-------GFPIGAMLA--G-PKVAETMQF----GAHGTTFGGNP-LAAAVARVALR--KLAS------PQIAAN 311 (408)
T ss_pred cchhcC-------CCceEEEEE--C-HHHHhhhcC----CCcCCCCCCCH-HHHHHHHHHHH--HHHh------ccHHHH
Confidence 566654 568887643 3 334444332 122 4677555 55666665553 1111 122333
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC------HHHHHHHhhhccceeeeCCCc
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------ATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~------~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
+..+-+.|.+.|+++....++-.-....|++.-+-+. ..++.+.| .+++|++.+.|.
T Consensus 312 ~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l-~~~Gvlv~~~g~ 374 (408)
T PRK04612 312 VARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLA-AEHGLLLLQAGP 374 (408)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHH-HHCCeEEeeCCC
Confidence 3333333333343332111122224456666555332 34555545 679999988773
No 152
>PLN02242 methionine gamma-lyase
Probab=85.98 E-value=16 Score=31.66 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=54.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHH--hhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIR--AFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R--~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ 79 (142)
||.||. .|.|+|..++ .+++.++.+.. ..+ ..++.++...+.....+++-+ +. ..+.+
T Consensus 222 SK~l~g------~g~~~gG~iv--~~~~li~~l~~----~~~~~~~~~g~~~~~~~A~l~~~~l~-----tl---~~r~~ 281 (418)
T PLN02242 222 SKFISG------GADIIAGAVC--GPAELVNSMMD----LHHGALMLLGPTMNPKVAFELSERLP-----HL---SLRMK 281 (418)
T ss_pred ccccCC------CCCceEEEEE--cCHHHHHHHHH----HhhhhhhccCCCCCHHHHHHHHcCCC-----cH---HHHHH
Confidence 799999 8999766544 34445444432 222 233333333233333333322 11 12334
Q ss_pred HHHHHHHHHHHHHHhcC----CCCCCcc--------cc----ccccceeecCCCHHHHHHHhhhccc
Q psy16706 80 RIISMRQSLKDNLQKEG----SNKPWNH--------IT----DQIGMFCYTGLNATQVRRKLIHDRS 130 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~----~~~~w~~--------i~----~q~GmF~~~gl~~~qv~~~L~~~~~ 130 (142)
+..+.+..+.+.|++++ .|+-.+| .. ...|||++.=-+++++.+ +.+.-.
T Consensus 282 ~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~-f~~~l~ 347 (418)
T PLN02242 282 EHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANR-LMRYLQ 347 (418)
T ss_pred HHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHH-HHHHhh
Confidence 66666777788888764 2331111 11 246788877335666655 434333
No 153
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=85.67 E-value=4.3 Score=35.02 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=51.8
Q ss_pred cccccccCCCCcccccceeEEEeCCHHHHHHHHH---------HHH---------HH-HHhhcCCCCchHHHHHHHHhCC
Q psy16706 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILS---------QLK---------IL-IRAFYSSPPIHGARIVQEILGD 63 (142)
Q Consensus 3 KnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~s---------ql~---------~~-~R~~~S~pp~~Ga~iv~~IL~d 63 (142)
|++|+ .+.+.+|+-+++..++.++ .+. .. ...++.+||.++-......|.
T Consensus 185 K~L~~----------ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~- 253 (374)
T TIGR01365 185 KVLGG----------EGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALK- 253 (374)
T ss_pred hccCC----------CCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHH-
Confidence 77777 5677777777777666553 111 11 124566777776666555552
Q ss_pred hhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcC
Q psy16706 64 PKLKSQWLTE--VKGMADRIISMRQSLKDNLQKEG 96 (142)
Q Consensus 64 p~L~~~W~~E--l~~m~~ri~~~R~~L~~~l~~~~ 96 (142)
..++| ++.+..|-..+.+.+++.+++.|
T Consensus 254 -----~i~~egGle~~~~Rh~~~a~~l~~~l~~lg 283 (374)
T TIGR01365 254 -----WAESIGGLKPLIARADDNLAVLEAFVAKNN 283 (374)
T ss_pred -----HHHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 12233 88999999999999999999887
No 154
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=84.55 E-value=3.8 Score=34.64 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=57.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.||. .+-|+|++.. +++..+.+... ..=.+|+.+| .++..+..+|+ .+.+. ...++.
T Consensus 254 gK~l~~------g~~~ig~v~~---~~~i~~~~~~~---~~~~t~~~~p-~~~~aa~a~L~--~i~~~------~l~~~~ 312 (401)
T TIGR01885 254 GKALSG------GVYPVSAVLA---DDDVMLTIKPG---EHGSTYGGNP-LACAVAVAALE--VLEEE------KLAENA 312 (401)
T ss_pred eccccC------CCCCcEEEEE---cHHHHhhccCC---CCCCCCCCCH-HHHHHHHHHHH--HHHhc------cHHHHH
Confidence 677776 5567776553 45555444321 1113555444 34555555553 12121 233456
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeec--CC-----CHHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT--GL-----NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~--gl-----~~~qv~~~L~~~~~Iyl~~~G 137 (142)
..+.+.|.+.|++.+.+- ...+ ...|.|..+ +. +..++..+| .+.+|++.+.+
T Consensus 313 ~~~~~~~~~~L~~l~~~~-~~~~-~g~g~~~~i~~~~~~~~~~~~~l~~~l-~~~Gv~v~~~~ 372 (401)
T TIGR01885 313 EKLGEIFRDQLKKLPKPI-ITEV-RGRGLLNAIVIDESKTGRTAWDLCLKL-KEKGLLAKPTH 372 (401)
T ss_pred HHHHHHHHHHHHhccCCc-eeEE-eecCeeEEEEeccCcchhHHHHHHHHH-HhCCEEEEecC
Confidence 666677777887775221 1112 234544443 22 345667667 57799998754
No 155
>PRK07179 hypothetical protein; Provisional
Probab=83.63 E-value=5.1 Score=33.89 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC----CHHHHHHHhhhcccee
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL----NATQVRRKLIHDRSLK 132 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl----~~~qv~~~L~~~~~Iy 132 (142)
.+..++++.+.|+.|.+.|++.| |+.. .. |.|..+-+ +.+.+...| .+++|+
T Consensus 301 ~~~~~~~l~~~~~~l~~~L~~~g----~~v~-~~-~~i~~l~~~~~~~~~~~~~~L-~~~GI~ 356 (407)
T PRK07179 301 ADDRRARLHANARFLREGLSELG----YNIR-SE-SQIIALETGSERNTEVLRDAL-EERNVF 356 (407)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC----CCCC-CC-CCEEEEEeCCHHHHHHHHHHH-HHCCce
Confidence 34567888888888888898765 4333 23 34433323 335666546 567887
No 156
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=83.56 E-value=23 Score=29.86 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc----cc---cceeec-CCCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITD----QI---GMFCYT-GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~----q~---GmF~~~-gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.+.+|...+.+.+.+.|.+.+. +..+.. .+ +-|++. |++++++...| ++++|.+.+
T Consensus 259 ~e~~~~r~~~l~~~l~~~l~~~~~---~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~~L-~~~gI~i~~ 324 (361)
T TIGR01366 259 LDWAVARTADSSSRLYSWAQERPY---ATPFVTDPGKRSQVVGTIDFVDDIDAATVAKIL-RANGIVDTE 324 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC---cccCCCChhhcccceEEEECCCccCHHHHHHHH-HHCCCeecc
Confidence 566778888888888888887763 222211 11 446654 57899997768 567998754
No 157
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=83.29 E-value=14 Score=30.31 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=51.3
Q ss_pred hhcCCCCchHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc-----ccccceee--cC
Q psy16706 44 AFYSSPPIHGARIVQEILGDPKLKSQWLTE-VKGMADRIISMRQSLKDNLQKEGSNKPWNHIT-----DQIGMFCY--TG 115 (142)
Q Consensus 44 ~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~E-l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~-----~q~GmF~~--~g 115 (142)
-.+++||.++..-+...| ++|.++ ++.+++|+..+.+.+.+.|.+.. + |.-+. ...++.++ .+
T Consensus 243 ~~~~t~~~~~~~a~~~al------~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~--~-~~~~~~~~~~~~~~~v~~~~~~ 313 (376)
T TIGR01977 243 FESGTLNTPGIAGLNAGI------KFIEKIGIANIAKKECMLTEKLLNGLREIN--K-VKIYGPADPANRVGVVSFTVEG 313 (376)
T ss_pred ccCCCCCHHHHHHHHHHH------HHHHHhCHHHHHHHHHHHHHHHHHHHhcCC--C-eEEeCCCCccccCCeEEEEECC
Confidence 345566655543333332 233332 46788899998888888887543 1 33221 13455443 36
Q ss_pred CCHHHHHHHhhhccceeeeCCC
Q psy16706 116 LNATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 116 l~~~qv~~~L~~~~~Iyl~~~G 137 (142)
.+.+++..+|.++|+|.+....
T Consensus 314 ~~~~~~~~~L~~~~gi~v~~g~ 335 (376)
T TIGR01977 314 IDSEEVADILDEKFDIATRTGL 335 (376)
T ss_pred CCHHHHHHHHhccCCEEEEccc
Confidence 7888898879777799986643
No 158
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=83.03 E-value=10 Score=31.69 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc---cccccceeecCC------------CHHHHHHHhhhcccee
Q psy16706 71 LTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHI---TDQIGMFCYTGL------------NATQVRRKLIHDRSLK 132 (142)
Q Consensus 71 ~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i---~~q~GmF~~~gl------------~~~qv~~~L~~~~~Iy 132 (142)
.+.++.+.+.+.. +..|.+.|++.| ++.+ +. ...|.++.+ +..++.++| .+.+|+
T Consensus 264 ~~~l~~~~~~~~~-~~~l~~~L~~~g----~~~~~~~~s-~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L-~e~GI~ 333 (370)
T TIGR02539 264 VERVKRWDEEVKK-TRWFVAELEDIG----FIQLGQKPK-EHDLVKFETPGFHEIAQKHKRRGYFLYEEL-KKRGIH 333 (370)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhCC----cEEEccCCC-cCceEEEECCchhHHhhhhccccHHHHHHH-HhCCCc
Confidence 3444455555555 446788888876 4422 33 344443322 123577767 566997
No 159
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=82.94 E-value=2.4 Score=36.51 Aligned_cols=112 Identities=7% Similarity=0.013 Sum_probs=55.8
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCc---hHHHHHHHHhCChhhHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPI---HGARIVQEILGDPKLKSQWLTEVKGMA 78 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~---~Ga~iv~~IL~dp~L~~~W~~El~~m~ 78 (142)
||.+|= +|.++|++.+ + ++. +.+.. ..-=.+|+.-|. .+...+..++.+++ +.+.++.+.
T Consensus 262 ~K~lg~------~G~pigav~~--~-~~~-~~~~~---~~~~~T~~gnpl~~aaa~a~l~~~i~~~~----l~~~~~~~g 324 (412)
T TIGR02407 262 SKSISG------YGLPLALTLI--K-PEL-DVWKP---GEHNGTFRGNNLAFVTATAALEYYWSDDA----FEKAVQRKS 324 (412)
T ss_pred chhccC------CccceeEEEE--c-hhh-hccCC---CccCCCCCccHHHHHHHHHHHHHHhcccH----HHHHHHHHH
Confidence 677777 7889998866 2 222 22211 111235554443 22222322355443 345555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCH----HHHHHHhhhccceeeeCCC
Q psy16706 79 DRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNA----TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 79 ~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~----~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.+..+.|.+.+ |+ +..-....|+|..+-+.+ .++..+| .+.+|++.+.|
T Consensus 325 ~~l~~~l~~l~~~~-----~~-~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~-~~~Gv~v~~~~ 380 (412)
T TIGR02407 325 EIIQERLDRIVAEY-----PE-LIKQVRGRGLMQGIECGDGDLAGKIAKAA-FENGLIIETSG 380 (412)
T ss_pred HHHHHHHHHHHhhC-----CC-ceEeeecceeEEEEEecChHHHHHHHHHH-HHCCCEEeccC
Confidence 55554333333221 10 111234678887776632 3555545 46899997665
No 160
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=81.62 E-value=4.7 Score=34.85 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=55.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.+|= |.|+|++.. +++..+.+... ..-.+|+.+| .++..+..+|+- +.+ +.+.+++
T Consensus 266 sK~l~~-------G~pigav~~---~~~i~~~~~~~---~~~~T~~~~p-~~~aaa~a~L~~--~~~------~~l~~~~ 323 (421)
T PRK06777 266 AKSLGG-------GMPISAVVG---RAEVMDAPAPG---GLGGTYAGNP-LAVAAALAVLDV--IAE------EKLCQRA 323 (421)
T ss_pred ehhhcC-------CCceEEEEE---cHHHHhccCCC---CCCCCCCcCH-HHHHHHHHHHHH--HHh------ccHHHHH
Confidence 566654 468887654 44454444321 1125666555 446666666641 111 2445566
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC-----------HHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN-----------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~-----------~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++++.|.+.|++......+-.-....|+|..+-+. .+++..+| .+.+|++.+.|
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~~~~ 389 (421)
T PRK06777 324 LILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQA-LEEGLLLLSCG 389 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHH-HhCCeEEeecC
Confidence 666666666665542111122223455555543221 12233323 46899998875
No 161
>PLN00144 acetylornithine transaminase
Probab=81.62 E-value=5.1 Score=34.09 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=56.4
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHH---HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQ---EILGDPKLKSQWLTEVKGMADRIISMRQSLKDN 91 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~---~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~ 91 (142)
|.|+|++.+ +++..+.+... ..=.+|+.+|.. +.++. .++.+++ +.+.++.+.+.+ ++.|.+.
T Consensus 241 G~pig~v~~---~~~~~~~~~~~---~~~~T~~~~pl~-~aaa~a~l~~i~~~~----~~~~~~~~g~~l---~~~l~~~ 306 (382)
T PLN00144 241 GLPIGAVLV---TEKVASAINPG---DHGSTFAGGPLV-CNAALAVLDKISKPG----FLASVAKKGEYL---RELLRRK 306 (382)
T ss_pred CcceEEEEE---cHHHHhccCCC---CCCCCCCCCHHH-HHHHHHHHHHHhhch----HHHHHHHHHHHH---HHHHHHH
Confidence 467777665 34444444321 112477766654 55565 4555444 344444544444 3333333
Q ss_pred HHhcCCCCCCccccccccceeecCC--CHHHHHHHhhhccceeeeCCCc
Q psy16706 92 LQKEGSNKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 92 l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
+.+. |. ...+. ..|+|..+-| +.+++..++ .+.+|.+.+.|.
T Consensus 307 ~~~~--~~-~~~vr-g~G~~~~l~l~~~~~~~~~~~-~~~Gv~i~~~~~ 350 (382)
T PLN00144 307 LGGN--PH-VKEVR-GVGLLVGIQLDVPAGPLVDAC-RDSGLLVLTAGK 350 (382)
T ss_pred HhhC--CC-ceeee-cCceEEEEEecCccHHHHHHH-HHCCeEEeecCC
Confidence 3333 21 22222 4899988765 456777646 679999887653
No 162
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=80.95 E-value=14 Score=33.33 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccc--ccccceeec-C---CCHHHHHHHhhhccceeeeC
Q psy16706 76 GMADRIISMRQSLKDNLQKEGSNKPWNHIT--DQIGMFCYT-G---LNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 76 ~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~--~q~GmF~~~-g---l~~~qv~~~L~~~~~Iyl~~ 135 (142)
.+++++...=+.|.+.|++.|. +.+. ..+.+.... | .+-.++.++| ++.+|++.+
T Consensus 339 ~y~~~l~~Na~~La~~L~~~G~----~vv~ggTdshIV~V~lg~~~~~g~~a~~~L-~e~GI~vn~ 399 (493)
T PRK13580 339 KYAQQVVDNARALAEGFLKRGA----RLVTGGTDNHLVLIDVTSFGLTGRQAESAL-LDAGIVTNR 399 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----CccCCCCCCCEEEEEeCCHHHHHHHHHHHH-HHCCeEEcc
Confidence 4455666555555667777773 3221 233444322 2 1234677657 788999874
No 163
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=80.62 E-value=7.9 Score=33.27 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=57.1
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHH-hhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIR-AFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R-~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||.+|= |-|+|++.. +++..+.+.. ..+ .+|+.+| ..+.++...|+.-+ .....+.+ +..
T Consensus 267 sK~l~~-------G~rig~v~~---~~~~~~~~~~----~~~~~t~~~~~-~~~~a~~~~l~~~~-~~~~~~~~---~~~ 327 (425)
T PRK08088 267 AKSIAG-------GFPLAGVTG---RAEVMDAIAP----GGLGGTYAGNP-IACAAALAVLKVFE-QENLLQKA---NAL 327 (425)
T ss_pred eccccC-------CCcceeeEe---cHHHHhhcCC----CCCCCCCCcCH-HHHHHHHHHHHHHH-hcCHHHHH---HHH
Confidence 565554 568888775 4555555432 122 3566555 56777777776422 12233333 333
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC------------HHHHHHHhhhccceeeeCCC
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~------------~~qv~~~L~~~~~Iyl~~~G 137 (142)
-..+|..|.+.+.+. |. .. -....|+|..+-|. ..++..++ .+.+|.+.+.+
T Consensus 328 ~~~~~~~l~~l~~~~--~~-~~-~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~-~~~Gv~~~~~~ 391 (425)
T PRK08088 328 GEKLKDGLLAIAEKH--PE-IG-DVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARA-RDKGLILLSCG 391 (425)
T ss_pred HHHHHHHHHHHHHhC--CC-eE-EEeccceEEEEEEecCCCCCCCCHHHHHHHHHHH-HhCCCEEecCC
Confidence 333333333322322 21 11 13345888777651 34555546 45688776654
No 164
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=80.04 E-value=5.3 Score=34.45 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=12.3
Q ss_pred HHHHHHhhhccceeeeCCC
Q psy16706 119 TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 119 ~qv~~~L~~~~~Iyl~~~G 137 (142)
.++...| .+.+|++.+.|
T Consensus 379 ~~i~~~l-~~~Gv~v~~~~ 396 (426)
T PRK00062 379 ARFFHAM-LDEGVYLAPSQ 396 (426)
T ss_pred HHHHHHH-HHCCeEeecCC
Confidence 3566545 57899998765
No 165
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=79.73 E-value=10 Score=32.93 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc----cccccee--ecCCCHHHHHHHhhhccceeeeCC
Q psy16706 72 TEVKGMADRIISMRQSLKDNLQKEGSNKPWNHIT----DQIGMFC--YTGLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 72 ~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~----~q~GmF~--~~gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
.+.+.+++++...++.|.+.|++.|. .-+. ...+..+ ..|++.+++...| ++++|++...
T Consensus 299 ~~~~~~~~~i~~l~~~l~~~L~~~g~----~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~vs~~ 364 (452)
T PTZ00094 299 PEWKEYAKQVLKNAKALAAALEKRGY----DLVTGGTDNHLVLVDLRPFGITGSKMEKLL-DAVNISVNKN 364 (452)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCc----EEecCCCCCceEeecCCcCCCCHHHHHHHH-HHCCcEEecc
Confidence 35567888899888999988877552 2221 1223332 2366888888856 7899999643
No 166
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=79.35 E-value=19 Score=30.27 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCc--cccccccceeecCCC-HHHHHHHhhhc
Q psy16706 80 RIISMRQSLKDNLQKEGSNKPWN--HITDQIGMFCYTGLN-ATQVRRKLIHD 128 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~~~~~w~--~i~~q~GmF~~~gl~-~~qv~~~L~~~ 128 (142)
+..+.+..+.+.|++. |+ +. +.|-+.|||++. ++ .+.+.+ +.+.
T Consensus 253 ~~~~~a~~l~~~L~~~--p~-v~~v~~P~~gg~~sf~-~~~~~~~~~-~~~~ 299 (366)
T PRK08247 253 QHEENAKAIAAFLNEQ--PG-VTDVLYPGRGGMLSFR-LQDEEWVNP-FLKS 299 (366)
T ss_pred HHHHHHHHHHHHHHhC--CC-eeEEecCCcCcEEEEE-ECCHHHHHH-HHHc
Confidence 4455666677888765 32 33 356689999994 63 343433 4443
No 167
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=79.08 E-value=7.8 Score=32.93 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-CCccccccccceeecCC------CHHHHHHHhhhccceeeeCCC
Q psy16706 77 MADRIISMRQSLKDNLQKEGSNK-PWNHITDQIGMFCYTGL------NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 77 m~~ri~~~R~~L~~~l~~~~~~~-~w~~i~~q~GmF~~~gl------~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+.+++..+++.|.+.|++.+... -|..+ ...|++.-+-+ ...++..+| .+++|++.+.|
T Consensus 300 l~~~~~~~~~~l~~~L~~l~~~~~~~~~v-rg~G~~~~i~~~~~~~~~~~~~~~~l-~~~Gv~~~~~g 365 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEKINARYNVFSEI-RGKGLLIGAVLTEAYQGKAKQFVNAA-AEEGVIALIAG 365 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEee-ecCceEEEEEEcCchhhHHHHHHHHH-HHCCeEEeecC
Confidence 34555555555556665544211 12222 34455544322 244666646 56799987655
No 168
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=78.69 E-value=10 Score=31.89 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=52.6
Q ss_pred cccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16706 16 ERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKE 95 (142)
Q Consensus 16 eRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~ 95 (142)
.|+|++.. +++..+.+.. .....+|+.+| .++..+...|+. +. + ..+.++++.+++.|.+.|++.
T Consensus 263 ~~ig~v~~---~~~~~~~l~~---~~~~~t~~~~~-~~~aa~~a~L~~--l~-----~-~~~~~~~~~~~~~l~~~L~~~ 327 (401)
T PRK00854 263 YPVSAVLS---NSEVLGVLKP---GQHGSTFGGNP-LACAVARAALKV--LT-----E-EGMIENAAEMGAYFLEGLRSI 327 (401)
T ss_pred cCeEEEEE---cHHHHhcccC---CCCCCCCCcCH-HHHHHHHHHHHH--HH-----H-cCHHHHHHHHHHHHHHHHHhh
Confidence 56665443 4444443321 01223555444 446655555542 11 1 224566777777777888776
Q ss_pred CCCCCCccccccccceeecC-----CCHHHHHHHhhhccceeeeCCC
Q psy16706 96 GSNKPWNHITDQIGMFCYTG-----LNATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 96 ~~~~~w~~i~~q~GmF~~~g-----l~~~qv~~~L~~~~~Iyl~~~G 137 (142)
+.+. ... ....|++..+- .+..++.++|. +.+|++.+.|
T Consensus 328 ~~~~-~~~-~~g~g~~~~i~~~~~~~~~~~~~~~L~-~~GV~v~~~~ 371 (401)
T PRK00854 328 RSNI-VRE-VRGRGLMLAVELEPEAGGARQYCEALK-ERGLLAKDTH 371 (401)
T ss_pred ccCc-eEE-EeccceEEEEEEecCchhHHHHHHHHH-HCCeEEecCC
Confidence 4221 111 12345543332 23566777685 5699987643
No 169
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=77.26 E-value=17 Score=29.85 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc---ccccceeec--CCCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHIT---DQIGMFCYT--GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~---~q~GmF~~~--gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.+.+++.++++.+.+.|++++. +..+. .+.++|++. +.+.+++.++| .+++|++..
T Consensus 273 ~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~gi~i~~ 335 (373)
T cd06453 273 MEAIAAHEHELTAYALERLSEIPG---VRVYGDAEDRAGVVSFNLEGIHPHDVATIL-DQYGIAVRA 335 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCccccCCeEEEEECCcCHHHHHHHH-HHCCEEecc
Confidence 566777888888888888877531 33332 245566664 34678887768 568998754
No 170
>PLN02624 ornithine-delta-aminotransferase
Probab=74.63 E-value=14 Score=32.60 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=12.8
Q ss_pred HHHHHHhhhccceeeeCCC
Q psy16706 119 TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 119 ~qv~~~L~~~~~Iyl~~~G 137 (142)
.++.+.| .+.+|++.+.|
T Consensus 397 ~~~~~~L-~e~GV~v~p~~ 414 (474)
T PLN02624 397 YDVCLKL-KERGLLAKPTH 414 (474)
T ss_pred HHHHHHH-HhCCeEEecCC
Confidence 4566657 67899998754
No 171
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=73.97 E-value=18 Score=29.68 Aligned_cols=59 Identities=20% Similarity=0.403 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-cccccccceeecCCCHHHHHHHhhhccceeeeC
Q psy16706 72 TEVKGMADRIISMRQSLKDNLQKEGSNKPWN-HITDQIGMFCYTGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 72 ~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~-~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.++.+..++...++.|.+.|++.| +. .++.+.+++++.--+++++..+|. +.+|++..
T Consensus 279 ~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~v~~~~~~~~~v~~~L~-~~gi~v~~ 338 (371)
T PRK13520 279 EGYRKVVERCMENTRWLAEELKERG----FEPVIEPVLNIVAFDDPNPDEVREKLR-ERGWRVSV 338 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC----CEEecCCCceEEEEecCCHHHHHHHHH-HCCceecc
Confidence 3456777888888888888888764 44 445567776654336788887785 45887754
No 172
>PLN02452 phosphoserine transaminase
Probab=73.46 E-value=11 Score=32.37 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=53.5
Q ss_pred hhcCCCCchHHHHHHHHhCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc-CCCCCCccccccccceeecCC---
Q psy16706 44 AFYSSPPIHGARIVQEILGDPKLKSQWLTE---VKGMADRIISMRQSLKDNLQKE-GSNKPWNHITDQIGMFCYTGL--- 116 (142)
Q Consensus 44 ~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~E---l~~m~~ri~~~R~~L~~~l~~~-~~~~~w~~i~~q~GmF~~~gl--- 116 (142)
++|.+||.++...+...|. |..| ++.+.+|-+++.+.|++.|++. |.-+....-..++.|-....+
T Consensus 238 s~~~TP~v~~i~~l~~aL~-------~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~ 310 (365)
T PLN02452 238 SLYNTPPCFGIYMCGLVFE-------DLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS 310 (365)
T ss_pred CccCChhHHHHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc
Confidence 5567999999988888776 5543 8899999999999999999874 321111000124554433333
Q ss_pred -CHHHHHHHhhhccceeeeCCC
Q psy16706 117 -NATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 117 -~~~qv~~~L~~~~~Iyl~~~G 137 (142)
..++.-..+ ++.++...+.=
T Consensus 311 ~~~~~f~~~~-~~~g~~~~~G~ 331 (365)
T PLN02452 311 ELEAEFVKEA-AKAGMVQLKGH 331 (365)
T ss_pred hhHHHHHHHH-HHCCCcccCCc
Confidence 233444424 67777766543
No 173
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=72.53 E-value=13 Score=31.73 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=17.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARIL 35 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~ 35 (142)
||.||. .|+++|.+++ .+++.++.+.
T Consensus 204 sK~lgg------~g~~~gG~v~--~~~~li~~l~ 229 (391)
T TIGR01328 204 TKYIGG------HGDVVAGLIC--GKAELLQQIR 229 (391)
T ss_pred cccccC------CCCceEEEEE--cCHHHHHHHH
Confidence 799999 9999877543 3555554443
No 174
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=71.58 E-value=3.6 Score=31.98 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCccccccccceeecCC--CHHHHHHHhhhccceeeeC
Q psy16706 65 KLKSQWLTEVKGMADRIISMRQSLKDNLQKEGS--NKPWNHITDQIGMFCYTGL--NATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 65 ~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~--~~~w~~i~~q~GmF~~~gl--~~~qv~~~L~~~~~Iyl~~ 135 (142)
+|..+|.+-++...+....|....--.++..-. .|..-+|.+.-|||--+|+ -++.|...|.+.|.||++.
T Consensus 16 dll~ewv~~~N~y~D~~lk~~di~gwdik~yv~~~~g~i~~il~ep~fFRnL~V~p~aq~v~keLt~~y~vYivt 90 (180)
T COG4502 16 DLLREWVKRYNIYKDKLLKMSDIKGWDIKNYVKPECGKIYDILKEPHFFRNLGVQPFAQTVLKELTSIYNVYIVT 90 (180)
T ss_pred HHHHHHHHHhhhccccCcChHhhcccchhhccCccCCeeeeeccCcchhhhcCccccHHHHHHHHHhhheEEEEE
Confidence 466778888887777777666555444443322 2456778889999999988 3455555599999999974
No 175
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=71.54 E-value=62 Score=27.44 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=56.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhc-CCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFY-SSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~-S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
+|.+|= .|+=+|.+ |++.+++..+++.. .|... ..+....|.++..-|.+ |....+|
T Consensus 196 tK~l~g------~~d~~gG~-v~~~~~~l~~~~~~-----~~~~~G~~~s~~~a~l~~~~L~t----------L~~r~~~ 253 (364)
T PRK07269 196 TKYLSG------HNDVLAGV-VVTNDLELYEKLFY-----NLNTTGAVLSPFDSYLLMRGLKT----------LSLRMER 253 (364)
T ss_pred ceeccC------CCcccceE-EEeCcHHHHHHHHH-----HHHHhCCCCCHHHHHHHHcCCCc----------HHHHHHH
Confidence 577776 77766664 45677776666542 22222 22333445566555554 2222333
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccce
Q psy16706 81 IISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSL 131 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~I 131 (142)
..+....+.+.|+++. .-.+-++|-..|||++.--+.+++.+ +.+.-.+
T Consensus 254 ~~~na~~~a~~L~~~p-~v~~v~ypg~gg~~sf~~~~~~~~~~-f~~~l~~ 302 (364)
T PRK07269 254 STANAQEVVAFLKKSP-AVKEVLYTGKGGMISFKVADETRIPH-ILNSLKV 302 (364)
T ss_pred HHHHHHHHHHHHHhCC-CccEEeCCCcCcEEEEEECCHHHHHH-HHHhCCc
Confidence 3334445555665432 11344556789999998545565554 4444333
No 176
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=70.76 E-value=40 Score=28.20 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccc-cccccceee--cCCCHHHHHHHhhhccceeeeC
Q psy16706 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHI-TDQIGMFCY--TGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 75 ~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i-~~q~GmF~~--~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.+.+++..+++.|.+.|++. || +..+ +.+.+++++ -+++++++...| .+++|.+.+
T Consensus 295 ~~~~~~~~~l~~~l~~~l~~~--~g-~~~~~~~~~~i~~~~~~~~~~~~~~~~L-~~~gI~v~~ 354 (401)
T PRK10874 295 NQAESWSRSLATLAEDALAKL--PG-FRSFRCQDSSLLAFDFAGVHHSDLVTLL-AEYGIALRA 354 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CC-EEEeCCCCCcEEEEEECCcCHHHHHHHH-HHCCcEEec
Confidence 446788888888888888754 22 3333 234555443 366778888767 668997764
No 177
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=70.26 E-value=51 Score=27.39 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc------ccceeecCCCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQ------IGMFCYTGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q------~GmF~~~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.+..++...|+.|.+.|++.. + +..+..+ ...|..-|++++++..+| .+++|.+..
T Consensus 257 ~~~~~~~~~~l~~~l~~~L~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~v~~ 320 (382)
T TIGR03403 257 LDFEKSHVRRLRDRLEDALLELP--D-VFVVGDREHRVPNTILISIKGVEGEAMLWDL-NKAGIAAST 320 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--C-EEEECCCCCCcCCEEEEEeCCCCHHHHHHhh-ccCCEEEEc
Confidence 66778899999999999987642 1 4444322 335666677888888767 678998874
No 178
>PLN02409 serine--glyoxylate aminotransaminase
Probab=70.19 E-value=45 Score=28.34 Aligned_cols=59 Identities=10% Similarity=0.180 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc----cc-cceee-c--CCCHHHHHHHhhhccceeeeC
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHITD----QI-GMFCY-T--GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~----q~-GmF~~-~--gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
-++.+.+|...+++.|.+.|++.| +..+.. .. ++.++ + |++++++..+|.++++|.+..
T Consensus 270 G~e~i~~~~~~l~~~l~~~L~~~g----~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~ 336 (401)
T PLN02409 270 GLENVIARHARLGEATRLAVEAWG----LKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGL 336 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC----CeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEc
Confidence 377888999999999999998765 333332 12 23323 2 578788876688899999863
No 179
>PRK06460 hypothetical protein; Provisional
Probab=70.05 E-value=36 Score=28.90 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy16706 76 GMADRIISMRQSLKDNLQKE 95 (142)
Q Consensus 76 ~m~~ri~~~R~~L~~~l~~~ 95 (142)
...+++.+.|..|.+.|++.
T Consensus 242 ~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 242 IRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 34556777788888888765
No 180
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=69.65 E-value=17 Score=31.27 Aligned_cols=110 Identities=11% Similarity=0.154 Sum_probs=51.8
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH---hCChhhHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEI---LGDPKLKSQWLTEVKGMA 78 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~I---L~dp~L~~~W~~El~~m~ 78 (142)
||.+|= |-|+|++.+ +++..+.+.. ...=.+|+..|.. +..+..+ +.+++ +.+-++.+.
T Consensus 265 sK~l~~-------G~pig~v~~---~~~i~~~~~~---~~~~~T~~~~pl~-~aaa~a~l~~l~~~~----~~~~~~~~g 326 (420)
T TIGR00700 265 AKSLAD-------GLPLSGVTG---RAEIMDAPAP---GGLGGTYAGNPLA-CAAALAVLAIIESEG----LIERARQIG 326 (420)
T ss_pred eccccC-------CcceEEEEe---cHHHHhhcCC---CCcCCCCCcCHHH-HHHHHHHHHHHHhcc----HHHHHHHHH
Confidence 566654 578888664 3444444321 1122566655533 4444333 33333 333444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-C----------HHHHHHHhhhccceeeeCCC
Q psy16706 79 DRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-N----------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 79 ~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~----------~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.+.-+.+. .+. |. +..+ ...|+|..+-+ + .+++.+.+ .+.+|.+.+.+
T Consensus 327 ~~l~~~L~~l~---~~~--~~-~~~v-rg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~p~~ 388 (420)
T TIGR00700 327 RLVTDRLTTLK---AVD--PR-IGDV-RGLGAMIAVELVDPGTTEPDAGLAERIATAA-HAAGLLLLTCG 388 (420)
T ss_pred HHHHHHHHHHH---hhC--CC-EEEe-eccceEEEEEEecCCCCCccHHHHHHHHHHH-HHCCeEEeccC
Confidence 44333222221 222 21 3333 34588877644 1 12233223 57999998865
No 181
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=69.05 E-value=27 Score=30.53 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=53.8
Q ss_pred cccccccCCCCcccccceeEEEeCCHHHHHHHHHH-H--------HHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHH
Q psy16706 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQ-L--------KILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTE 73 (142)
Q Consensus 3 KnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sq-l--------~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~E 73 (142)
||+|- .| +++|.=+++.++++.+. + ..-.=++|-+||...-.....+|. |.++
T Consensus 200 KnlGp----------aG-ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~-------Wlk~ 261 (365)
T COG1932 200 KNLGP----------AG-LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFK-------WLKS 261 (365)
T ss_pred hccCc----------cc-eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHH-------HHHH
Confidence 78888 56 66666677777777664 1 122357899999888777666654 9988
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhcC
Q psy16706 74 ---VKGMADRIISMRQSLKDNLQKEG 96 (142)
Q Consensus 74 ---l~~m~~ri~~~R~~L~~~l~~~~ 96 (142)
|+.|..|-+.--+.|++.+++.+
T Consensus 262 ~GGl~~~~~rn~~ka~~LY~~id~s~ 287 (365)
T COG1932 262 QGGLEALEARNQAKAQLLYDWIDKSD 287 (365)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 57777777776677778887654
No 182
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=68.06 E-value=14 Score=29.42 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=51.0
Q ss_pred HHHHHhC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCccccccccceeec--------CCCHH
Q psy16706 56 IVQEILG--DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEG------SNKPWNHITDQIGMFCYT--------GLNAT 119 (142)
Q Consensus 56 iv~~IL~--dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~------~~~~w~~i~~q~GmF~~~--------gl~~~ 119 (142)
.++..|. ||+-+..+.+.++.+.++|...-+.+.+.+.... +-..|+|+.+.-|+.... ..+++
T Consensus 107 ~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~ 186 (256)
T PF01297_consen 107 AIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKLPGRPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPK 186 (256)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGGEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEChHHHHHHHhcCCceeeeeccccccCCCHH
Confidence 3344444 8999999999999999999998888887777655 224678877777776433 23677
Q ss_pred HHHHHhh---hccce
Q psy16706 120 QVRRKLI---HDRSL 131 (142)
Q Consensus 120 qv~~~L~---~~~~I 131 (142)
++.+ |. ++++|
T Consensus 187 ~l~~-l~~~ik~~~v 200 (256)
T PF01297_consen 187 DLAE-LIKLIKENKV 200 (256)
T ss_dssp HHHH-HHHHHHHTT-
T ss_pred HHHH-HHHHhhhcCC
Confidence 7766 54 34444
No 183
>PRK07582 cystathionine gamma-lyase; Validated
Probab=67.84 E-value=52 Score=27.79 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=59.3
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.++-| -|-|.|.+ ++++++..+++ ...-+.....|+...+.++..-|.+-+++- +|.
T Consensus 192 sK~l~G~-----~g~~~G~v--~~~~~~l~~~l----~~~~~~~g~~~~~~~a~l~~r~l~tl~~R~----------~~~ 250 (366)
T PRK07582 192 TKALTGH-----SDLLLGYV--AGRDPELMAAV----ERWRLLAGAIPGPFEAWLAHRSLGTLGLRF----------ARQ 250 (366)
T ss_pred cccccCC-----CCeeEEEE--EcCcHHHHHHH----HHHHHHhCCCCCHHHHHHHHhccccHHHHH----------HHH
Confidence 5666431 45677764 35566555444 344445667777777877777777544332 233
Q ss_pred HHHHHHHHHHHHhcC------CCCCCcc---------ccccccceeecCCCHHHHHHHhhhccceee
Q psy16706 82 ISMRQSLKDNLQKEG------SNKPWNH---------ITDQIGMFCYTGLNATQVRRKLIHDRSLKL 133 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~------~~~~w~~---------i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl 133 (142)
.+.-..|.+.|++.. .|+-=+| ...-.|||++.==+++++.+ ..+...|+.
T Consensus 251 ~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~-~~~~l~~~~ 316 (366)
T PRK07582 251 CANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAER-FVAASRLVV 316 (366)
T ss_pred HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHH-HHHhCCcce
Confidence 333444445555332 2221011 11258899887337888877 446666554
No 184
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=67.07 E-value=17 Score=31.35 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=19.4
Q ss_pred ccccceeecCCCH----HHHHHHhhhccceeeeCCC
Q psy16706 106 DQIGMFCYTGLNA----TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 106 ~q~GmF~~~gl~~----~qv~~~L~~~~~Iyl~~~G 137 (142)
...|++..+.+.+ .++...| .+.+|++.+.|
T Consensus 350 rg~Gl~~~i~l~~~~~~~~l~~~~-~~~Gv~~~~~~ 384 (425)
T PRK09264 350 RGRGMMQGIDFGDGELAGKIAAEA-FENGLIIETSG 384 (425)
T ss_pred eecccEEEEEecChHHHHHHHHHH-HHCCCEEeccC
Confidence 3567877776643 2455535 46789987755
No 185
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=66.71 E-value=56 Score=28.14 Aligned_cols=56 Identities=16% Similarity=0.377 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccc----ccccceeec--CCCHHHHHHHhhhccceeeeCC
Q psy16706 76 GMADRIISMRQSLKDNLQKEGSNKPWNHIT----DQIGMFCYT--GLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 76 ~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~----~q~GmF~~~--gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+.++++...-+.|.+.|++.| |+.+. ...+...+- +.++..+.++| ++.+|++.+.
T Consensus 286 ~~~~~l~~~a~~l~~~L~~~G----~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L-~~~GI~v~~~ 347 (416)
T PRK13034 286 TYAKQVIANAQALAEVLKERG----YDLVSGGTDNHLLLVDLRPKGLSGKDAEQAL-ERAGITVNKN 347 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcC----CEeccCCCCCcEEEEEcCCCCCCHHHHHHHH-HhCCcEEecc
Confidence 344555555555556666666 33332 233333322 44667775647 7789999753
No 186
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=64.97 E-value=19 Score=31.26 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=31.1
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH---hCChhhHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEI---LGDPKLKSQWLTEVKGMA 78 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~I---L~dp~L~~~W~~El~~m~ 78 (142)
||.+|= |.|+|++.+ +++..+.+... ..=.+|+.+| .++.++..+ +.+++ +.+.++.+.
T Consensus 287 sK~l~~-------G~pig~v~~---~~~i~~~~~~~---~~~~T~~g~~-l~~aaa~a~l~~i~~~~----~~~~~~~~g 348 (451)
T PRK06918 287 SKSLGA-------GVPISGVIG---RKEIMDESAPG---ELGGTYAGSP-LGCAAALAVLDIIEKEN----LNDRAIELG 348 (451)
T ss_pred ehhhcC-------CCccEEEEE---cHHHHhccCCC---CcCcCCCcCH-HHHHHHHHHHHHHHHCC----HHHHHHHHH
Confidence 566654 678888665 34444443211 1124566555 345553333 33333 344455555
Q ss_pred HHHHH
Q psy16706 79 DRIIS 83 (142)
Q Consensus 79 ~ri~~ 83 (142)
+++.+
T Consensus 349 ~~l~~ 353 (451)
T PRK06918 349 KVVMN 353 (451)
T ss_pred HHHHH
Confidence 54443
No 187
>KOG0258|consensus
Probab=64.11 E-value=94 Score=27.97 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=79.9
Q ss_pred cccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 14 VGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDP----KLKSQWLTEVKGMADRIISMRQSLK 89 (142)
Q Consensus 14 YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp----~L~~~W~~El~~m~~ri~~~R~~L~ 89 (142)
.|.|=|-+=++..+++..+. +..++-.. -.||..|...+..+.+-| .-+.+|..|.+.+..-++. |+.|.
T Consensus 302 CG~RGGYmEv~n~~prv~~q----i~Kl~si~-lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~-ra~l~ 375 (475)
T KOG0258|consen 302 CGQRGGYMESLNRDPRVKQQ----IKKLASIK-LCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRS-RAKLT 375 (475)
T ss_pred ecccCCeeecccCChhHHHH----HHHHHhhh-hcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHH-HhHHH
Confidence 67888998888888765544 44333221 357788898888888754 3578999999999999987 66655
Q ss_pred -HHHHhcCCCCCCccccccccceeecCC--CHHHH--------------HHHhhhccceeeeCCC
Q psy16706 90 -DNLQKEGSNKPWNHITDQIGMFCYTGL--NATQV--------------RRKLIHDRSLKLSNVE 137 (142)
Q Consensus 90 -~~l~~~~~~~~w~~i~~q~GmF~~~gl--~~~qv--------------~~~L~~~~~Iyl~~~G 137 (142)
+.++.+.. -..-+-|.-||.+.-+ ++..| +.+|.+.-+|.++|..
T Consensus 376 ~~~~ns~~g---i~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGS 437 (475)
T KOG0258|consen 376 EDAFNSLEG---ISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGS 437 (475)
T ss_pred HHHHhhcCc---eeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCC
Confidence 66665432 5556779999998743 34333 2346677888888754
No 188
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=64.06 E-value=18 Score=31.22 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=36.5
Q ss_pred HhhcCCCCchHHHHHHHHhCChhhHHHHHH-H---HHHHHHHHHHHHHHHHHHHHhcC
Q psy16706 43 RAFYSSPPIHGARIVQEILGDPKLKSQWLT-E---VKGMADRIISMRQSLKDNLQKEG 96 (142)
Q Consensus 43 R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~-E---l~~m~~ri~~~R~~L~~~l~~~~ 96 (142)
.++|.+||.+.-.++..+|. |.. | |+.+.+|-+...+.|++.+++..
T Consensus 235 ~s~~nTPpv~~iy~l~~~l~-------~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~ 285 (364)
T PRK12462 235 RSNYNTPPVFAIYVMALVLR-------WIRDEIGGVHAMRDINARKAAMLYATLDALN 285 (364)
T ss_pred CCCCCCchHHHHHHHHHHHH-------HHHHhccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46888999999888888876 653 3 57788888888888888887654
No 189
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=63.10 E-value=50 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc---cccc---eeecC---CCHHHHHHHhhhccceeeeCC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITD---QIGM---FCYTG---LNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~---q~Gm---F~~~g---l~~~qv~~~L~~~~~Iyl~~~ 136 (142)
++...++++..|..|.+.|++.| |..+.. +.+. |.+.+ ++...+.++| ++++|.+.+.
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L-~~~gi~v~~g 328 (363)
T TIGR02326 262 VAARHQRYQQNQKTLVAGMRALG----FEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRL-KEQGFVIYPG 328 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----CeeccCcccCCceEEEEECCCCCCCCHHHHHHHH-HHCCEEEECC
Confidence 45577899999999999998875 444432 3443 22322 4556777658 5679998765
No 190
>PRK07049 methionine gamma-lyase; Validated
Probab=63.09 E-value=31 Score=30.01 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=57.9
Q ss_pred Ccccc-cccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcC-CCCchHHHHHHHHhCChhhHHHHHHHHHHHHH
Q psy16706 2 KKNYG-IHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYS-SPPIHGARIVQEILGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 2 SKnfg-L~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S-~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ 79 (142)
||.|| . =|-|+|.++ .+++.++.+ .. .|..|+ ..+.+.+.++..-|. .+....+
T Consensus 240 SK~~gG~------~glr~G~vv---~~~~l~~~l----~~-~~~~~g~~ls~~~a~l~~r~L~----------tl~~R~~ 295 (427)
T PRK07049 240 TKYVGGH------SDLVAGAVL---GRKALIRQV----RA-LRSAIGTQLDPHSCWMLGRSLE----------TLVLRME 295 (427)
T ss_pred ceeecCC------CCcEEEEEE---CCHHHHHHH----HH-HHHhcCCCCCHHHHHHHHcCCC----------hHHHHHH
Confidence 78888 5 688999764 344444443 33 344444 344455555555443 3444445
Q ss_pred HHHHHHHHHHHHHHhcC------CCCCC--c----cc-----cccccceeecCC-CHHHHHHHhhhccceee
Q psy16706 80 RIISMRQSLKDNLQKEG------SNKPW--N----HI-----TDQIGMFCYTGL-NATQVRRKLIHDRSLKL 133 (142)
Q Consensus 80 ri~~~R~~L~~~l~~~~------~~~~w--~----~i-----~~q~GmF~~~gl-~~~qv~~~L~~~~~Iyl 133 (142)
+..+.|..+.+.|+++- +|+-. + .+ .--.|||++.=- +.+++.+ +.+.-.++.
T Consensus 296 ~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~-f~~~l~l~~ 366 (427)
T PRK07049 296 RANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFR-FLNALQIFK 366 (427)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHH-HHHcCcccE
Confidence 55666777788887552 22210 0 01 123678888722 4555555 555555544
No 191
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=62.63 E-value=62 Score=26.51 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc----cccceee--cCCCHHHHHHHhhhccceeeeCC
Q psy16706 70 WLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITD----QIGMFCY--TGLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 70 W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~----q~GmF~~--~gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
+.+.++...+|+..++..|.+.|++.| |..+.. ..|+.++ -|.+.+++..+|. + +|-+.+.
T Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~l~~~g----~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~-~-~i~v~~g 321 (353)
T TIGR03235 255 ARRNAQAWEVKLRAMRNQLRDALQTLG----VKLNGDPAETIPHILNFSIDGVNSEALIVNLR-A-DAAVSTG 321 (353)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCC----eEEeCCcccccCCEEEEEeCCcCHHHHHHHHh-C-CeEEEch
Confidence 345677888999999999999887644 444322 2344444 4778889988785 4 5555433
No 192
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=62.42 E-value=58 Score=27.78 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=11.0
Q ss_pred HHHHHhhhccceeeeCCC
Q psy16706 120 QVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 120 qv~~~L~~~~~Iyl~~~G 137 (142)
++.++| .+++|++.+.|
T Consensus 325 ~~~~~~-~~~Gi~~~~~~ 341 (392)
T PLN03227 325 QIAHHS-LSEGVAVVSTG 341 (392)
T ss_pred HHHHHH-HHCCCEEEecc
Confidence 666656 56788886544
No 193
>PRK06767 methionine gamma-lyase; Provisional
Probab=62.41 E-value=73 Score=27.03 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=12.5
Q ss_pred CcccccccCCCCcccccceeEE
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSI 23 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~v 23 (142)
||.||. .|.|+|.+.+
T Consensus 206 sK~l~g------~g~~~gG~v~ 221 (386)
T PRK06767 206 TKYIGG------HGDVVAGVTI 221 (386)
T ss_pred cceecC------CCCceeEEEE
Confidence 689988 8999866554
No 194
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=62.28 E-value=87 Score=25.86 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=51.4
Q ss_pred CCCchHHHHHHHHhCChhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-----ccccccceeec--CCCHH
Q psy16706 48 SPPIHGARIVQEILGDPKLKSQW-LTEVKGMADRIISMRQSLKDNLQKEGSNKPWNH-----ITDQIGMFCYT--GLNAT 119 (142)
Q Consensus 48 ~pp~~Ga~iv~~IL~dp~L~~~W-~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~-----i~~q~GmF~~~--gl~~~ 119 (142)
+||..+..-+...+. .| ...++.+.+|+..+.+.+.+.|.+.+. +.. -....+++++. +.+++
T Consensus 252 T~~~~~~~~l~~al~------~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~ 322 (371)
T PF00266_consen 252 TPNVPAIYALNEALK------LLEEIGIERIRERIRELAEYLREALEELPG---IEVLGPDDEPRRPSIVSFNLPGSDAD 322 (371)
T ss_dssp S--HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---EEESSSSCGGBGTTEEEEEETTSSHH
T ss_pred ceeeehhhhHHHHHh------hhhccccccchhhhhhHHHHHHhhhhcCCc---eeEeeecccccccceEEEeecCCCHH
Confidence 566555444444332 22 345677788888888899999988652 232 24467887765 88899
Q ss_pred HHHHHhhhccceeeeC
Q psy16706 120 QVRRKLIHDRSLKLSN 135 (142)
Q Consensus 120 qv~~~L~~~~~Iyl~~ 135 (142)
++...|.++ +|.+..
T Consensus 323 ~~~~~L~~~-~I~~~~ 337 (371)
T PF00266_consen 323 DVVKYLEER-GIAVST 337 (371)
T ss_dssp HHHHHHHHH-TEEEEE
T ss_pred HHHHHHhhc-CEEEec
Confidence 999978555 999877
No 195
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=61.74 E-value=12 Score=29.75 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.5
Q ss_pred CCCchHHHHHHHHhCChhhHHH
Q psy16706 48 SPPIHGARIVQEILGDPKLKSQ 69 (142)
Q Consensus 48 ~pp~~Ga~iv~~IL~dp~L~~~ 69 (142)
..|+.||++|++--.||++++.
T Consensus 32 ~gP~nGA~vVArAW~Dp~fk~~ 53 (185)
T TIGR01323 32 WGPENGAKVVAKAWVDPEFRAL 53 (185)
T ss_pred cCCcchhhhhhHHhcCHHHHHH
Confidence 3899999999999999998754
No 196
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=60.70 E-value=56 Score=27.74 Aligned_cols=59 Identities=8% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc-------ccccceeec--CCCHHHHHHHhhhccceeee
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHIT-------DQIGMFCYT--GLNATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~-------~q~GmF~~~--gl~~~qv~~~L~~~~~Iyl~ 134 (142)
-++.+.+++...++.|.+.|++. ++ +..+. .+.|++++. +.+++++..+|.++++|.+.
T Consensus 306 g~~~i~~~~~~l~~~l~~~L~~~--~g-~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~ 373 (424)
T PLN02855 306 GMDRIHEYEVELGTYLYEKLSSV--PG-VRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIR 373 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcC--CC-EEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEe
Confidence 45677888888899998888764 11 22221 234666554 67888888878777799765
No 197
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=60.53 E-value=52 Score=26.55 Aligned_cols=60 Identities=10% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc-cccccceeec--C-----CCHHHHHHHhhhccceeee
Q psy16706 72 TEVKGMADRIISMRQSLKDNLQKEGSNKPWNHI-TDQIGMFCYT--G-----LNATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 72 ~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i-~~q~GmF~~~--g-----l~~~qv~~~L~~~~~Iyl~ 134 (142)
..++.+.+++..+++.|.+.|++... +..+ +.+.||+++. + .+..++.++|.++..+++.
T Consensus 244 ~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~ 311 (345)
T cd06450 244 DGYGEHIDRIVDLAKYLAELIRADPG---FELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVP 311 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---eEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEE
Confidence 45677888888888888888876531 4333 2467887765 2 3445777768554345443
No 198
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=60.02 E-value=50 Score=28.29 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=15.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADK 28 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~ 28 (142)
||.||. .|.|+|.+++ ++++
T Consensus 210 sK~l~g------~g~~~GG~vv-~~~~ 229 (398)
T PRK07504 210 TKHIDG------QGRCLGGVVL-SDKA 229 (398)
T ss_pred cccccC------CccceEEEEE-eCcH
Confidence 799999 9999987643 4443
No 199
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=59.36 E-value=55 Score=27.56 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=11.2
Q ss_pred HHHHHHHhhhccceeeeC
Q psy16706 118 ATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 118 ~~qv~~~L~~~~~Iyl~~ 135 (142)
..++..+| .+++|+..+
T Consensus 333 ~~~~~~~L-~~~gI~~~~ 349 (387)
T PRK09331 333 GFFLYEEL-KKRGIHGIK 349 (387)
T ss_pred chhHHHHH-HHcCceEEc
Confidence 34566668 567999543
No 200
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=58.71 E-value=74 Score=25.97 Aligned_cols=86 Identities=14% Similarity=0.243 Sum_probs=52.3
Q ss_pred CcccccceeEEEeCCHHHHHH-------HHHHHHHHHH-hhcCCCC-chHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q psy16706 13 PVGERVGAFSIVSADKDEAAR-------ILSQLKILIR-AFYSSPP-IHGARIVQEILGDPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 13 ~YgeRvGal~vv~~~~~~~~~-------v~sql~~~~R-~~~S~pp-~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~ 83 (142)
+|-.+.|-..|++++++.+.. ...--..... +.|+.|+ ..|-.-++.-|+ ..|...-.++|=.+...|.+
T Consensus 9 ~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~-~~L~~~I~~~LP~l~~~I~~ 87 (295)
T PF01031_consen 9 VIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLS-ELLVEHIRKSLPSLKSEIQK 87 (295)
T ss_dssp SS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHH-HHHHHHHHHhCcHHHHHHHH
Confidence 477799999999998765421 2221222222 2466643 455555666666 57777888888888888888
Q ss_pred HHHHHHHHHHhcCCCC
Q psy16706 84 MRQSLKDNLQKEGSNK 99 (142)
Q Consensus 84 ~R~~L~~~l~~~~~~~ 99 (142)
.-...-++|+++|.+.
T Consensus 88 ~l~~~~~eL~~lG~~~ 103 (295)
T PF01031_consen 88 KLQEAEKELKRLGPPR 103 (295)
T ss_dssp HHHHHHHHHHTHHHCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8888778888887654
No 201
>KOG3208|consensus
Probab=58.43 E-value=55 Score=26.87 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHHHhhcC--CCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 27 DKDEAARILSQLKILIRAFYS--SPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLK 89 (142)
Q Consensus 27 ~~~~~~~v~sql~~~~R~~~S--~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~ 89 (142)
.+.+++-+..|+..++-.+=. ..|+.++.+.+++-...+.......|+...+.-+...|+.+-
T Consensus 56 ~~~eie~LLeql~~vndsm~~~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~ 120 (231)
T KOG3208|consen 56 LENEIEGLLEQLQDVNDSMNDCASSPANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERES 120 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777655544 667788999999999988888999999999998888776654
No 202
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=57.25 E-value=1.1e+02 Score=25.33 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=9.6
Q ss_pred HHHHHhhhccceeeeC
Q psy16706 120 QVRRKLIHDRSLKLSN 135 (142)
Q Consensus 120 qv~~~L~~~~~Iyl~~ 135 (142)
++..+| .+++|+...
T Consensus 316 ~~~~~L-~~~gI~~~~ 330 (361)
T cd06452 316 FLYSEL-KKRGIHGIK 330 (361)
T ss_pred hHHHHH-HHcCceEEc
Confidence 466658 456998643
No 203
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=56.85 E-value=15 Score=23.48 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCCCC---ccccccccceeecCCCHHHHHHHhhhcc
Q psy16706 85 RQSLKDNLQKEGSNKPW---NHITDQIGMFCYTGLNATQVRRKLIHDR 129 (142)
Q Consensus 85 R~~L~~~l~~~~~~~~w---~~i~~q~GmF~~~gl~~~qv~~~L~~~~ 129 (142)
...|.++++.+|. |+| .-|... +.-.+|+++||..+| .+|
T Consensus 11 h~~Fl~ai~~~G~-g~~a~pk~I~~~---~~~~~lT~~qV~SH~-QKy 53 (57)
T TIGR01557 11 HDRFLQAVQKLGG-PDWATPKRILEL---MVVDGLTRDQVASHL-QKY 53 (57)
T ss_pred HHHHHHHHHHhCC-CcccchHHHHHH---cCCCCCCHHHHHHHH-HHH
Confidence 3456678888885 568 666542 334788999999988 454
No 204
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=56.11 E-value=29 Score=30.36 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=23.8
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHh
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEIL 61 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL 61 (142)
||.+|- |.|+|++.. +++..+.+.. ..--.+|+.+|.. +..+...|
T Consensus 272 sK~l~~-------G~pigav~~---~~~i~~~~~~---~~~~~T~~~~p~~-~aaa~a~l 317 (443)
T PRK08360 272 GKPLGG-------GLPISATIG---RAEIMDSLPP---LAHAFTLSGNPVA-SAAALAVI 317 (443)
T ss_pred cccccC-------CceeEEEEE---cHHHHhhhcC---CCCCCCCCcCHHH-HHHHHHHH
Confidence 666665 578888544 4555554431 1112466666644 44444444
No 205
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=54.42 E-value=50 Score=28.21 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=37.3
Q ss_pred HHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16706 54 ARIVQEILG-DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSN 98 (142)
Q Consensus 54 a~iv~~IL~-dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~ 98 (142)
++|..++.. ||+-+.+..++|+.+-.+|...-..+.+.|...+.-
T Consensus 165 ~~i~~~L~e~dp~~~a~y~aNlk~f~~~La~~d~~i~~~L~pvk~K 210 (318)
T COG4531 165 AAIAKKLAELDPQNAAKYDANLKDFEAQLAALDKKVGEELAPVKGK 210 (318)
T ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 445555555 899999999999999999999999999988876644
No 206
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=53.94 E-value=47 Score=27.60 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=48.7
Q ss_pred cccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCC---CCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q psy16706 14 VGERVGAFSIVSADKDEAARILSQLKILIRAFYSS---PPIHGARIVQEILGDPKLKSQWLTEVKGMADRII 82 (142)
Q Consensus 14 YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~---pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~ 82 (142)
-|+|++...-+-+|++.+.+=...++.++|.++.. .|.+-+.++......++...++.+.+..+.++++
T Consensus 62 ~g~~v~~~~~~p~s~eDL~~rr~~~~~~a~~t~G~~gR~pD~~n~~~~~~~~~~~~~~~y~~n~~~y~~~~~ 133 (264)
T PF11794_consen 62 TGERVSRSFHIPRSKEDLVKRRKAIREWARYTGGCMGRSPDYMNALLAGLAAAADFFGTYAENIRRYYEYVQ 133 (264)
T ss_dssp TTCEEEGGG----SHHHHHHHHHHHHHHHHHCCC--STCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhcccCCCHHHHHHHHHHHHHHHHHcCceeecChhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57899999999999999888888899999998877 5777777777777777777665555555554444
No 207
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=53.09 E-value=1.3e+02 Score=25.28 Aligned_cols=59 Identities=10% Similarity=0.180 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc--ccccceeec--CCCHHHHHHHhhhccceeeeC
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHIT--DQIGMFCYT--GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~--~q~GmF~~~--gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
.++.+.+++..+++.+.+.|.+.. + +.-+. ...|++++. +.+++++...| ++++|.+..
T Consensus 298 g~~~i~~~~~~l~~~l~~~l~~~~--~-~~~~~~~~~~~iv~~~~~~~~~~~~~~~L-~~~gI~v~~ 360 (406)
T PRK09295 298 GLNNIAEYEQNLMHYALSQLESVP--D-LTLYGPQNRLGVIAFNLGKHHAYDVGSFL-DNYGIAVRT 360 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCC--C-EEEeCCCCCceEEEEEECCcCHHHHHHHH-HhCCeEEec
Confidence 356778899888999988887642 1 22222 236777664 56778888756 788998743
No 208
>PRK07505 hypothetical protein; Provisional
Probab=52.90 E-value=60 Score=27.39 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=12.0
Q ss_pred HHHHHHHhhhccceeeeC
Q psy16706 118 ATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 118 ~~qv~~~L~~~~~Iyl~~ 135 (142)
.+++..+|. +.+|++.+
T Consensus 344 ~~~~~~~l~-~~Gi~v~~ 360 (402)
T PRK07505 344 AIKAAKQLL-DRGFYTSP 360 (402)
T ss_pred HHHHHHHHH-HCCCeEee
Confidence 456777685 67999864
No 209
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=52.84 E-value=39 Score=29.42 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=53.2
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
||.+|- |.++|++.+ +++ .+.+.. ...=++|+..|.. +..+..+|+ .+.++ .+.+++
T Consensus 274 gK~l~~-------G~Pigav~~---~~~-~~~~~~---~~~~~T~~gnpla-~aaa~a~L~--~i~~~------~l~~~~ 330 (442)
T TIGR00709 274 SKAVGG-------GLPLAVLLI---APE-FDAWQP---AGHTGTFRGNQLA-MVTGTEALN--YWKDD------NLAQNA 330 (442)
T ss_pred cccccC-------CcccEEEEE---chH-HhccCC---CcCCCCCCcCHHH-HHHHHHHHH--HHHhc------CHHHHH
Confidence 677776 478888775 233 333321 1122677766644 444444442 11111 223344
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecCCC------------------HHHHHHHhhhccceeeeCCC
Q psy16706 82 ISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------------------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 82 ~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~------------------~~qv~~~L~~~~~Iyl~~~G 137 (142)
+++.+.|.+.|+++.....+-.-....|++.-+-+. ...+...+ .+++|++.+.|
T Consensus 331 ~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gvl~~~~~ 403 (442)
T TIGR00709 331 QERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGAC-FENGLLLETGG 403 (442)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHH-HHCCeEEeecC
Confidence 555555555555432111122223456666655331 12344434 47889987654
No 210
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=51.98 E-value=41 Score=29.33 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=10.8
Q ss_pred HHHHhhhccceeeeCCC
Q psy16706 121 VRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 121 v~~~L~~~~~Iyl~~~G 137 (142)
+.+++ .+.+|++.+.|
T Consensus 394 ~~~~~-~~~Gil~~~~~ 409 (441)
T PRK05769 394 VLYEA-FKRGLLLLGAG 409 (441)
T ss_pred HHHHH-HhCCcEEecCC
Confidence 44434 46889998776
No 211
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=51.53 E-value=1.1e+02 Score=25.89 Aligned_cols=68 Identities=24% Similarity=0.397 Sum_probs=47.1
Q ss_pred cccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCch---H---HHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q psy16706 16 ERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIH---G---ARIVQEILGDPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 16 eRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~---G---a~iv~~IL~dp~L~~~W~~El~~m~~ri~~ 83 (142)
.+++++--.+.|++...++.+....+.+-.|+.-|.. | .+.|.+++.+++=+++.+.-.++|+.++..
T Consensus 14 q~~~~~~~~t~ded~~~~~~~~~~~lls~~y~~~~~~a~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~ 87 (285)
T COG1578 14 QAVNAVKLATDDEDLRSRIMSEALKLLSEEYGESAVPAIAGTLIHREVYKILGNEDPYKEYKRRANEIALKVLP 87 (285)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhCcCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 3455556677888887777777777777778776655 2 246777888888777777767776666554
No 212
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=50.99 E-value=56 Score=28.12 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=11.2
Q ss_pred HHHHHHhhhccceeeeCCC
Q psy16706 119 TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 119 ~qv~~~L~~~~~Iyl~~~G 137 (142)
..+.+.| .+++|++.+.|
T Consensus 380 ~~~~~~l-~~~Gv~~~~~g 397 (433)
T PRK08117 380 EKILDKC-LEKGLLFYLCG 397 (433)
T ss_pred HHHHHHH-HHCCCEEeecC
Confidence 3455535 57899886654
No 213
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=50.16 E-value=1.2e+02 Score=25.60 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-C-CCCCCcccc-----ccccceeec-CCCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKE-G-SNKPWNHIT-----DQIGMFCYT-GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~-~-~~~~w~~i~-----~q~GmF~~~-gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
++..++|+..+...|.+.|++. + .++ +..+. ...|+.++. +.+++++..+| .+++|++..
T Consensus 307 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~-~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L-~~~gi~v~~ 374 (406)
T TIGR01814 307 MEALRKKSLLLTDYLEELIKARCGGPPV-LTIITPRDHAQRGCQLSLTHPVPGKAVFQAL-IKRGVIGDK 374 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCc-eEEeCCCChhhcCCeEEEEecCCHHHHHHHH-HHCCEEEec
Confidence 5777888888888888888764 2 121 22221 134565432 34678887768 567998764
No 214
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=49.56 E-value=61 Score=28.13 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=18.2
Q ss_pred cccceeecCCCH-----------HHHHHHhhhccceeeeCCC
Q psy16706 107 QIGMFCYTGLNA-----------TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 107 q~GmF~~~gl~~-----------~qv~~~L~~~~~Iyl~~~G 137 (142)
..|+|..+-+.+ ..+.+.+ .+++|++...|
T Consensus 349 G~Gl~~~iel~~~~~~~~~~~~~~~~~~~~-~~~Gvl~~~~g 389 (425)
T PRK07495 349 GPGFMNAVEFNDADSGLPSAEFANRVRLKA-LEKGLILLTCG 389 (425)
T ss_pred cCceEEEEEEecCCCCCccHHHHHHHHHHH-HHCCeEEeecC
Confidence 458888776522 2344434 46889886554
No 215
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=49.46 E-value=80 Score=27.81 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCccccccccceeecCCCHHHHHHHhhhccceeeeCCCcc
Q psy16706 68 SQWLTEVKGMADRIISMRQSLKDNLQKEGS----NKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNVEKC 139 (142)
Q Consensus 68 ~~W~~El~~m~~ri~~~R~~L~~~l~~~~~----~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~Gri 139 (142)
+.=.+|++....|+.++|..|.+.|.+... .|+=.+-.-+.=-|++-|+..|.+...| +..+||+....-+
T Consensus 252 ~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L-~~~gI~vStGSAC 326 (386)
T COG1104 252 EIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLAL-DLAGIAVSTGSAC 326 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhc-cccCeEEeccccc
Confidence 345678888899999999999999986421 1221222223336788899988888856 8899999754433
No 216
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=49.36 E-value=15 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=27.2
Q ss_pred Cccccccc--cceeecC---CCHHHHHHHhhhccceeeeCCCcc
Q psy16706 101 WNHITDQI--GMFCYTG---LNATQVRRKLIHDRSLKLSNVEKC 139 (142)
Q Consensus 101 w~~i~~q~--GmF~~~g---l~~~qv~~~L~~~~~Iyl~~~Gri 139 (142)
|.-|+... -+-..++ .+++.++.+| +.++||.+..|..
T Consensus 16 W~sl~~~~~~e~~~~~~~~~~~~~~i~~~L-~~~nI~~iA~~~~ 58 (114)
T PF09066_consen 16 WKSLPDSNQQELSIQLNASVPSPDAIEEKL-QANNIFTIASGKV 58 (114)
T ss_dssp HHHS-GGG--EEEEEETT----HHHHHHHH-HCTT-EEEEEEEC
T ss_pred HHhCCcccceEEEEeccccCCcHHHHHHHH-HHCCEEEEecCCC
Confidence 77777776 7766666 7999999978 8999999887654
No 217
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=48.85 E-value=40 Score=29.48 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=48.1
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH--HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16706 21 FSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQE--ILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSN 98 (142)
Q Consensus 21 l~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~--IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~ 98 (142)
+.+|+-+++..+.+...-....=++|+.+|..-|...+. ++.++++ .+.+..+-+++ ++.|-+.+.+.+.|
T Consensus 277 ~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~----~~~~~~~g~~l---~~~l~~~~~~~g~~ 349 (433)
T PRK00615 277 AAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGF----YTQLSTLEQNF---LSPIEEMIRSQGFP 349 (433)
T ss_pred eeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccH----HHHHHHHHHHH---HHHHHHHHHHcCCC
Confidence 334444666655553211112235776666554443332 3444333 34444444444 33344444444533
Q ss_pred CCCccccccccceeecCCC-----------------HHHHHHHhhhccceeeeCCC
Q psy16706 99 KPWNHITDQIGMFCYTGLN-----------------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 99 ~~w~~i~~q~GmF~~~gl~-----------------~~qv~~~L~~~~~Iyl~~~G 137 (142)
. .....|++..+-+. ...+...| .+++||+.+.+
T Consensus 350 --v--~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~ 400 (433)
T PRK00615 350 --V--SLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSA-FSKGVYLSPSP 400 (433)
T ss_pred --e--EEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHH-HHCCeeecCcc
Confidence 1 11225665544331 11445545 46799987653
No 218
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=48.67 E-value=57 Score=27.02 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc-----eeec---CCCHHHHHHHhhhccceeeeC
Q psy16706 73 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGM-----FCYT---GLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 73 El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~Gm-----F~~~---gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
.++.+++++..++..|.+.|++.+. +. .+ ...+ |..- +.+++++..+| .+++|++..
T Consensus 305 g~~~~~~~~~~~~~~l~~~L~~~~~---~~-~~-~~~~~~~v~~~~~~~~~~~~~~~~~~L-~~~gi~~~~ 369 (398)
T cd00613 305 GLKEIAERAHLNANYLAKRLKEVGG---VL-PF-NGPFFHEFVLRLPPLYGIRAEDLAKAL-IDGGFHAPT 369 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---cc-cC-CCCeeEEEEEEcCCcchHHHHHHHHhh-hhcCccccc
Confidence 4556788888888888898987652 11 11 1112 2222 23467777767 467887644
No 219
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=47.97 E-value=17 Score=23.49 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 68 SQWLTEVKGMADRIISMRQSLKDNL 92 (142)
Q Consensus 68 ~~W~~El~~m~~ri~~~R~~L~~~l 92 (142)
++|.++|+.+...|+..|..|...+
T Consensus 3 ~e~~~qL~~~~~~l~~qR~~F~~~q 27 (57)
T PF12592_consen 3 EEALAQLDEAEHELRQQRSLFHQHQ 27 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5799999999999999998877543
No 220
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=47.79 E-value=1.1e+02 Score=22.39 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhc--------CCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 32 ARILSQLKILIRAFY--------SSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDN 91 (142)
Q Consensus 32 ~~v~sql~~~~R~~~--------S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~ 91 (142)
.-|.+||.......| .+||.-|-.-+...+.. -..+..||..+|..+.++
T Consensus 24 r~Vl~QL~etnp~~~~wL~~F~~~~~~~DGd~fl~~L~~e----------~~~LA~RIM~vR~~la~~ 81 (111)
T PF02341_consen 24 RTVLAQLYETNPPAYIWLYNFLSRNPLQDGDAFLEALMRE----------NQELALRIMEVREHLAEE 81 (111)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHSTCSSHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCccHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHH
Confidence 345566665543332 36666666666655553 146699999999999975
No 221
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=47.34 E-value=22 Score=25.08 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=23.1
Q ss_pred Ccccc--cceeEEEeCCHHHHHHHHHHHHH
Q psy16706 13 PVGER--VGAFSIVSADKDEAARILSQLKI 40 (142)
Q Consensus 13 ~YgeR--vGal~vv~~~~~~~~~v~sql~~ 40 (142)
+||.. .-+|++|++|++.++....-|..
T Consensus 85 iy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 85 VYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 57877 88999999999999887766643
No 222
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=45.66 E-value=1.2e+02 Score=26.08 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=27.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhC
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~ 62 (142)
+|.||. .|+++|..++ ++++... ..+....|.....++..-|.++..-|.
T Consensus 215 tK~l~g------~g~~~gG~v~-~~~~~~~----~~l~~~~~~~g~~~s~~~a~l~l~~L~ 264 (403)
T PRK07810 215 TKHIDG------QGRVLGGAIL-GDREYID----GPVQKLMRHTGPALSAFNAWVLLKGLE 264 (403)
T ss_pred CceecC------CcCceeEEEE-eChHHHH----HHHHHHHHHhCCCCCHHHHHHHHhccC
Confidence 688888 9999977544 4443222 234444454444444454555444444
No 223
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=45.49 E-value=67 Score=20.25 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 65 KLKSQWLTEVKGMADRIISMRQSLKDNLQ 93 (142)
Q Consensus 65 ~L~~~W~~El~~m~~ri~~~R~~L~~~l~ 93 (142)
.|..+-..|+++.+.|...-|+-+.+++.
T Consensus 19 ~LD~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 19 SLDPEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 35566789999999999999999998865
No 224
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=44.19 E-value=59 Score=23.28 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 62 GDPKLKSQWLTEVKGMADRIISMRQSLKDNLQ 93 (142)
Q Consensus 62 ~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~ 93 (142)
.||+++++-.+|++....+|..+...+.+.|-
T Consensus 7 ~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll 38 (115)
T PF03462_consen 7 EDEEMRELAEEEIEQLEEELEELEKELLDSLL 38 (115)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999988886653
No 225
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=44.02 E-value=1.8e+02 Score=23.85 Aligned_cols=57 Identities=12% Similarity=0.248 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc---cc-cceeec-C----CCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITD---QI-GMFCYT-G----LNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~---q~-GmF~~~-g----l~~~qv~~~L~~~~~Iyl~~ 135 (142)
++...+++...|..|.+.|++.| |..+.. .. +..++. + .+.+++..+| .+.+|.+.+
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gi~v~~ 328 (368)
T PRK13479 263 VPARGARYANNQRTLVAGMRALG----FEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERL-KEQGFVIYP 328 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----CcccCCchhcCceEEEEECCCCCCcCHHHHHHHH-HHCCEEEec
Confidence 44556788888888889998876 433321 11 223332 2 3456777768 456998854
No 226
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=43.79 E-value=2.3e+02 Score=24.93 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=54.8
Q ss_pred HHHHHH--HhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccee--
Q psy16706 37 QLKILI--RAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFC-- 112 (142)
Q Consensus 37 ql~~~~--R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~-- 112 (142)
+.+..- +.+-.+||.+--.-+..-|. .--.+=++..-+|=+.+...+.+.+++.| +..+. ..+..+
T Consensus 229 ~~~~~~~~~~~p~Tppv~~i~aL~~al~-----~i~~EGle~r~~RH~~~~~a~r~~~~alG----l~~~~-~~~~~s~t 298 (383)
T COG0075 229 WLKYMEKKGSTPYTPPVNLIYALREALD-----LILEEGLEARIARHRRLAEALRAGLEALG----LELFA-DPERRSPT 298 (383)
T ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHcC----Ccccc-CcccCCCc
Confidence 344443 56777888876665554443 21122255556666677788888888888 44444 444443
Q ss_pred ------ecCCCHHHHHHHhhhccceeeeC
Q psy16706 113 ------YTGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 113 ------~~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
=-|.+.+++...|+++|+|-+.+
T Consensus 299 vta~~~P~g~~~~~~~~~~~~~~g~~i~g 327 (383)
T COG0075 299 VTAIKVPEGVDDKKVRRALLKEYGVEIAG 327 (383)
T ss_pred eEEEECCCCCCcHHHHHHHHHhCCEEecc
Confidence 33666666766688888887653
No 227
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=43.68 E-value=81 Score=28.05 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=11.4
Q ss_pred HHHHHhhhccceeeeCCC
Q psy16706 120 QVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 120 qv~~~L~~~~~Iyl~~~G 137 (142)
++.+.| .+++||+.+.+
T Consensus 429 ~~~~~l-~~~Gv~~~~~~ 445 (474)
T PLN02482 429 RFHRGM-LEEGVYLAPSQ 445 (474)
T ss_pred HHHHHH-HHCCeEEeccC
Confidence 445545 46899998764
No 228
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=43.53 E-value=12 Score=29.87 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=18.4
Q ss_pred CCchHHHHHHHHhCChhhHHHH
Q psy16706 49 PPIHGARIVQEILGDPKLKSQW 70 (142)
Q Consensus 49 pp~~Ga~iv~~IL~dp~L~~~W 70 (142)
.|..||+||++--.||++|+.-
T Consensus 39 ~P~~GarvVArAW~Dp~FK~rL 60 (188)
T PF02979_consen 39 GPRNGARVVARAWTDPAFKARL 60 (188)
T ss_dssp SHHHHHHHHHHHHH-HHHHHHH
T ss_pred CccccceeehhhhCCHHHHHHH
Confidence 6999999999999999987643
No 229
>PRK06541 hypothetical protein; Provisional
Probab=43.30 E-value=98 Score=27.22 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccc--cccccceeecCCC----------H--------HHHHHHhhhccceeeeCC
Q psy16706 78 ADRIISMRQSLKDNLQKEGSNKPWNHI--TDQIGMFCYTGLN----------A--------TQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 78 ~~ri~~~R~~L~~~l~~~~~~~~w~~i--~~q~GmF~~~gl~----------~--------~qv~~~L~~~~~Iyl~~~ 136 (142)
.+++.++.+.|.+.|++... |..+ ....|+|.-+-+. + ..+..+| .+.+|++.+.
T Consensus 348 ~~~~~~~g~~l~~~L~~l~~---~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~ 422 (460)
T PRK06541 348 LDHVRDNEPAFRATLEKLLD---LPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPAL-FEAGLYCRAD 422 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhc---CCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHH-HhCCeEEEec
Confidence 45555556666666665531 4444 3356666655431 1 1233435 4689998753
No 230
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=42.54 E-value=1.9e+02 Score=23.64 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhC--------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16706 26 ADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG--------DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGS 97 (142)
Q Consensus 26 ~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~--------dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~ 97 (142)
+|+++++++..+-..-.-.. --||..|..+...+.. +|.+.+...+|+++| ++-|.+..++|++.|+
T Consensus 141 ~d~~eve~il~~~e~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~sF~~~l~~ql~~l----~~~r~e~~~~~~~k~~ 215 (219)
T PRK13415 141 EDEKEIEEILAQHEERLESK-AEWSRWGQKLRDQWKGKSKQKQTTLPSFSALLKEELKEL----KEKRSEGLKRLKKKGT 215 (219)
T ss_pred CCHHHHHHHHHHHHHhhhhh-hchHHHHHHHHHhhhccccCCCCCCccHHHHHHHHHHHH----HHHHHHHHHHHHhccc
Confidence 66667777765444321111 1245667777666662 355666666666665 4558888888988886
Q ss_pred CC
Q psy16706 98 NK 99 (142)
Q Consensus 98 ~~ 99 (142)
.+
T Consensus 216 ~~ 217 (219)
T PRK13415 216 AH 217 (219)
T ss_pred cc
Confidence 54
No 231
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=42.43 E-value=86 Score=27.38 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=10.2
Q ss_pred HHHHHhhhccceeeeCC
Q psy16706 120 QVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 120 qv~~~L~~~~~Iyl~~~ 136 (142)
.+..+| .+++|++.+.
T Consensus 383 ~~~~~~-~~~Gv~~~~~ 398 (445)
T PRK08593 383 KICNYC-FEHGVVIIAV 398 (445)
T ss_pred HHHHHH-HHCCeEEecc
Confidence 455545 4689998653
No 232
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=41.75 E-value=2e+02 Score=25.50 Aligned_cols=58 Identities=17% Similarity=0.354 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc----ccccceee--cCCCHHHHHHHhhhccceeeeCC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHIT----DQIGMFCY--TGLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~----~q~GmF~~--~gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
.+.+++++...-+.|.+.|.+.| +.-+. .+..++.+ .|++..++.+.| ++.+|.+-++
T Consensus 312 ~~~~~~~~~~na~~L~~~L~~~G----~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L-~~~~I~~nk~ 375 (475)
T PLN03226 312 FKAYQKQVKANAAALANRLMSKG----YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVL-DLAHITLNKN 375 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC----CEEEcCCCCCCEEEEEccCCCCCHHHHHHHH-HHCCCEECCC
Confidence 34556677776777777777765 33333 23333333 367888998856 7888887654
No 233
>COG3691 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.52 E-value=69 Score=22.95 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=29.9
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPP 50 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp 50 (142)
++.+--.+.+..+..+++.....|+..+|+.+|-|-
T Consensus 28 ~Dct~~~s~~~as~a~ae~~La~lt~kAr~veSepc 63 (98)
T COG3691 28 SDCTAEYSRFFATRAEAEEALAALTEKARAVESEPC 63 (98)
T ss_pred CCceEEEEEEecCHHHHHHHHHHHHHHHHhhccCcc
Confidence 344555677889999999999999999999999664
No 234
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=40.43 E-value=91 Score=26.22 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=14.7
Q ss_pred CCCHHHHHHHhhh-ccceeee
Q psy16706 115 GLNATQVRRKLIH-DRSLKLS 134 (142)
Q Consensus 115 gl~~~qv~~~L~~-~~~Iyl~ 134 (142)
|++++++..+|++ ...|+.-
T Consensus 311 g~~~~~l~~~L~~~~~~I~~r 331 (363)
T TIGR01437 311 GMTAADVVQALRQGEPAIYTR 331 (363)
T ss_pred CCCHHHHHHHHhcCCCCEEEe
Confidence 7899999998854 3447765
No 235
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=40.28 E-value=1e+02 Score=24.05 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhC--ChhhHHHHHHHHHHHHHHHHH
Q psy16706 30 EAARILSQLKILIRAFYSSPPIHGARIVQEILG--DPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 30 ~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~--dp~L~~~W~~El~~m~~ri~~ 83 (142)
....|...|...++.-|.-.-..=+..|.++|. ||+|+++=..+.++...+-+.
T Consensus 92 IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~ 147 (170)
T PLN00122 92 ILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKE 147 (170)
T ss_pred hHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888998887776666667888888 799999888888776666543
No 236
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=40.27 E-value=2.5e+02 Score=24.57 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=11.3
Q ss_pred HHHHHHHhhhccceeeeC
Q psy16706 118 ATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 118 ~~qv~~~L~~~~~Iyl~~ 135 (142)
..+....|.++ +||..+
T Consensus 335 a~~~s~~l~~~-Gi~v~~ 351 (388)
T COG0156 335 ALEASRALLEE-GIYVSA 351 (388)
T ss_pred HHHHHHHHHHC-CeeEee
Confidence 45566657666 999753
No 237
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=39.30 E-value=27 Score=24.78 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=23.9
Q ss_pred hcCCCCchHHHHHH--HHhCChhhHHHHHHHHHHHHHHHH
Q psy16706 45 FYSSPPIHGARIVQ--EILGDPKLKSQWLTEVKGMADRII 82 (142)
Q Consensus 45 ~~S~pp~~Ga~iv~--~IL~dp~L~~~W~~El~~m~~ri~ 82 (142)
..|-||-.--++-- ..-.||+|+ +|.++++.||+---
T Consensus 27 ~CSppPCPvi~veYkkel~a~p~lk-~wne~vq~~Rk~dp 65 (96)
T PF15500_consen 27 LCSPPPCPVIRVEYKKELAADPALK-AWNETVQAKRKLDP 65 (96)
T ss_pred ccCCCCCCchhHHHHHHhccCHHHH-HHHHHHHHHHhhch
Confidence 36667765544432 233468875 69999999987543
No 238
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=39.18 E-value=18 Score=27.61 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHhCChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCcccccc----cccee-ecCCCHHHHHHHhhhcccee
Q psy16706 59 EILGDPKLKSQWLTEVKGMADRIISMRQSLK-DNLQKEGSNKPWNHITDQ----IGMFC-YTGLNATQVRRKLIHDRSLK 132 (142)
Q Consensus 59 ~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~-~~l~~~~~~~~w~~i~~q----~GmF~-~~gl~~~qv~~~L~~~~~Iy 132 (142)
++|+=..|+..=-.|++.++++=...|..|- .-+.++..|..|.--..- .|+|= -..++|.. +.+||+
T Consensus 3 ~~ltl~~L~tm~a~elE~~R~~Ged~RR~L~~aVm~~L~~P~gW~~n~Ey~~EFgGffPVq~Rftp~~------~~~~l~ 76 (143)
T PF06290_consen 3 TELTLEVLKTMSAQELEDYRAAGEDFRRELTHAVMRELTLPEGWRVNAEYRSEFGGFFPVQCRFTPSH------ERFHLA 76 (143)
T ss_dssp ----HHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHT----TTEEEEE-SSSTT-S-SSSEEEEEETT-------SEEEE
T ss_pred ceehHHHHhhcCHHHHHHHHHhhHHHHHHhHHHHHHhccCCccceeeceeccccccEeeEEEEecCCC------CcEEEE
Confidence 4455456778888999999999999999999 567899999999865543 44441 11334443 358999
Q ss_pred eeCCCcccC
Q psy16706 133 LSNVEKCSQ 141 (142)
Q Consensus 133 l~~~Gri~~ 141 (142)
+-+-|++|+
T Consensus 77 vCSpG~~sp 85 (143)
T PF06290_consen 77 VCSPGEVSP 85 (143)
T ss_dssp EE-SSSS-S
T ss_pred EcCCCCcCc
Confidence 999999886
No 239
>PF09019 EcoRII-C: EcoRII C terminal; InterPro: IPR015109 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C-terminal catalytic domain of the type II restriction endonuclease EcoRII, which has a restriction endonuclease-like fold with a central five-stranded mixed beta-sheet surrounded on both sides by alpha-helices. EcoRII cleaves DNA specifically at single 5' CCWGG sites []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 3HQG_A 1NA6_A 2GB7_C 2FQZ_A 3BM3_B.
Probab=38.70 E-value=22 Score=27.71 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeec---CCCHHHHHHHhhhccceeee
Q psy16706 64 PKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYT---GLNATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 64 p~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~---gl~~~qv~~~L~~~~~Iyl~ 134 (142)
..+|+.|.+-++++ +||.. ||.+| |++..|++. | .+++|+++
T Consensus 96 TTlkdRWrQVl~Ea-~ri~~--------------------------k~L~TL~~~IS~~q~~e-M-~~~~v~LV 140 (164)
T PF09019_consen 96 TTLKDRWRQVLNEA-DRIRV--------------------------KHLLTLDEGISENQLDE-M-RAHNVQLV 140 (164)
T ss_dssp SS-TTGCGHHHHHH-HHHSC--------------------------EEEEE--S---HHHHHH-H-HHTTEEEE
T ss_pred ccHHHHHHHHHHHH-Hhhhh--------------------------eEEEecCCCCCHHHHHH-H-HHCCEEEE
Confidence 45788999888886 33211 33333 789999999 9 67888875
No 240
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=38.58 E-value=61 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 64 PKLKSQWLTEVKGMADRIISMRQSLKDNL 92 (142)
Q Consensus 64 p~L~~~W~~El~~m~~ri~~~R~~L~~~l 92 (142)
++-+++|..||...-+-|..+|+.|..+-
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKe 56 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKE 56 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45589999999999999999999998543
No 241
>PF03281 Mab-21: Mab-21 protein
Probab=38.05 E-value=1.7e+02 Score=23.57 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q psy16706 33 RILSQLKILIRAFYSSPPIHGARIVQEILGDPKLK----SQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQI 108 (142)
Q Consensus 33 ~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~----~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~ 108 (142)
.....|+.+.+..+.+++.-.+..+.++|=-.-.+ ..|.+ +.+.+|+..+=..|.+.|++...|.-|. .+.
T Consensus 195 ~~l~llk~l~~~~~~~~~~l~syhLkt~ll~~~~~~p~~~~W~~--~~l~~~l~~~l~~L~~~L~~~~Lphff~---~~~ 269 (292)
T PF03281_consen 195 KCLRLLKALRDRHLTNLSGLSSYHLKTVLLWLCEKHPSSSDWSE--ENLGERLLDLLDFLIKCLQEGRLPHFFI---PNL 269 (292)
T ss_pred HHHHHHHHHHHhccccCCCccHHHHHHHHHHHHHcCCCCCCCCh--HHHHHHHHHHHHHHHHHHhcCCCCccCC---CCc
Confidence 34556777777777677888887777776432222 36855 4667888888889999998877665443 366
Q ss_pred cceeecCCCHHHHHHHhhh
Q psy16706 109 GMFCYTGLNATQVRRKLIH 127 (142)
Q Consensus 109 GmF~~~gl~~~qv~~~L~~ 127 (142)
-||. +++++++.. +.+
T Consensus 270 NLf~--~~~~~~~~~-~~~ 285 (292)
T PF03281_consen 270 NLFQ--HLSPEELDE-LAR 285 (292)
T ss_pred ccCC--CCCHHHHHH-HHH
Confidence 6774 448888777 643
No 242
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=37.73 E-value=38 Score=29.70 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.8
Q ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q psy16706 53 GARIVQEILGDPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 53 Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~ 83 (142)
--..+..+|++|.+...|.+|++.|.+.=++
T Consensus 326 D~~~~~~lL~~~~~~~~w~~EL~~Ml~~~~K 356 (384)
T PLN00060 326 DLQIAKSLLSSKFLQNRYREELTLMVQTGKR 356 (384)
T ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHHhCcc
Confidence 3456778899999989999999999876443
No 243
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=37.59 E-value=1.4e+02 Score=26.51 Aligned_cols=73 Identities=18% Similarity=0.049 Sum_probs=35.0
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy16706 20 AFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNK 99 (142)
Q Consensus 20 al~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~ 99 (142)
+-.++++|++.++.+... ...|. ++.....+...+++ .-.+-+++|.++..++++.+.+.|++.....
T Consensus 281 Gg~I~~~d~el~~~i~~~--y~g~~----~~s~~~~~~~~ll~------~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~ 348 (444)
T TIGR03531 281 GAIIYSFDENFIQEISKS--YPGRA----SASPSLDVLITLLS------LGSKGYLELLKERKEMYKYLKELLQKLAERH 348 (444)
T ss_pred EEEEEECCHHHHHHHHHh--ccCCC----CChHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333446787777655431 11121 23334444444443 1224445555555666666666666543333
Q ss_pred CCccc
Q psy16706 100 PWNHI 104 (142)
Q Consensus 100 ~w~~i 104 (142)
.+..+
T Consensus 349 ~~~~~ 353 (444)
T TIGR03531 349 GERLL 353 (444)
T ss_pred CcEee
Confidence 35444
No 244
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=36.95 E-value=1.4e+02 Score=20.52 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCCchHHHHHHHHhC-ChhhHHHHHH------------HHHHHHHHHHHH
Q psy16706 47 SSPPIHGARIVQEILG-DPKLKSQWLT------------EVKGMADRIISM 84 (142)
Q Consensus 47 S~pp~~Ga~iv~~IL~-dp~L~~~W~~------------El~~m~~ri~~~ 84 (142)
...+..|..+...+++ +|+++..+.. +++.-..++...
T Consensus 17 ~~~~~~g~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (140)
T cd01040 17 ADREEIGLEFYERLFKAHPETRALFSRFGGLSAALKGSPKFKAHGKRVLNA 67 (140)
T ss_pred ccHHhHHHHHHHHHHHHChhHHHHhHHhCCchHhHccCHHHHHHHHHHHHH
Confidence 5678899999999999 7999999987 565555555543
No 245
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=36.90 E-value=2e+02 Score=23.78 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc----ccccce--eecCCCHHHHHHHhhhccceeeeC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHIT----DQIGMF--CYTGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~----~q~GmF--~~~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
++.+..++..++..|.+.|.+. .|+ +.... ...|.+ .+.+.+++++...| ++++|.+..
T Consensus 253 ~~~~~~~~~~l~~~l~~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gI~v~~ 317 (379)
T TIGR03402 253 LEEENTRVRALRDRLEAGLLAR-IPD-ARLNGDPTKRLPNTVNISFEYIEGEAILLLL-DMEGICASS 317 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCC-EEEeCCCccCCCCEEEEEecCCCHHHHHHhh-ccCCEEEEc
Confidence 4555678888888888888641 111 22222 112444 44577899998867 678999864
No 246
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=36.89 E-value=1.1e+02 Score=19.15 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=30.9
Q ss_pred hHHHHHHHHhCChh-hHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 52 HGARIVQEILGDPK-LKSQWLTEVKGMADRIISMRQSL 88 (142)
Q Consensus 52 ~Ga~iv~~IL~dp~-L~~~W~~El~~m~~ri~~~R~~L 88 (142)
.||.-+...++|+. ...+...++.+-..+|.-.+..|
T Consensus 18 ~Gae~m~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L 55 (57)
T smart00742 18 EGAENMRKLTSNDRKVLSEAQSMLRESNQKLDLLKEEL 55 (57)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888888888876 88899999999888888877655
No 247
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=36.68 E-value=1.9e+02 Score=21.97 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCC
Q psy16706 28 KDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISM---RQSLKDNLQKEGS 97 (142)
Q Consensus 28 ~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~---R~~L~~~l~~~~~ 97 (142)
+..+...-.+|+++.+..-.|| ..-.+|=..|-+--++-++|.++.+.+....+.. .+.|-+.|+..|+
T Consensus 2 p~~It~w~~ALryv~~~v~~n~-~~~~~Ir~Li~~Q~~~Er~w~~~Re~l~~k~~~r~e~~k~l~~~l~s~g~ 73 (150)
T PF10454_consen 2 PSTITTWPAALRYVMKTVAQNP-EFLQRIRRLIKEQHDHERQWWEGREALIAKQKARAEKKKKLDEVLRSVGG 73 (150)
T ss_pred chhhhcHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555666777766555554 4556666666667888899999999998888842 3334445666665
No 248
>PF08565 CDC37_M: Cdc37 Hsp90 binding domain; InterPro: IPR013874 Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the Hsp90 chaperone (heat shock protein 90) binding domain of Cdc37 []. It is found between the N-terminal Cdc37 domain IPR013855 from INTERPRO, which is predominantly involved in kinase binding, and the C-terminal domain of Cdc37 IPR013873 from INTERPRO whose function is unclear. ; PDB: 1US7_B 2W0G_A 2K5B_B.
Probab=36.58 E-value=2e+02 Score=22.28 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHhC--ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 38 LKILIRAFYSSPPIHGARIVQEILG--DPKLKSQWLTEVKGMADRIISMRQSLK 89 (142)
Q Consensus 38 l~~~~R~~~S~pp~~Ga~iv~~IL~--dp~L~~~W~~El~~m~~ri~~~R~~L~ 89 (142)
+..++.+.-.+|+..=.-...+|.. +|+.++...+|++...+||+. |....
T Consensus 113 i~eLak~~~~~pr~~v~~FF~r~~~~~~~~~~~~F~~dv~~~~~rIk~-Ra~~~ 165 (173)
T PF08565_consen 113 IRELAKSLKRDPRDGVRLFFKRIKTPGHPEAKKVFEDDVEAFYERIKE-RAKEK 165 (173)
T ss_dssp HHHHHHHHTS-GGGCHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3344555556664444446777777 688999999999999999998 65554
No 249
>TIGR00743 conserved hypothetical protein. These small proteins are approximately 100 amino acids in length and appear to be found only in gamma proteobacteria. The function of this protein family is unknown.
Probab=36.30 E-value=94 Score=22.12 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=32.7
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCc
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPI 51 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~ 51 (142)
++++-.+..+..+.+.++.....+...+|...|.|..
T Consensus 25 ~D~~a~~~~~~~~~~~Ae~~l~~l~ekAk~vesepc~ 61 (95)
T TIGR00743 25 SDCTSKFSRFFATRAEAESFLAKLTEKARAVESEPCE 61 (95)
T ss_pred CCcEEEEEEEeCCHHHHHHHHHHHHHHHHHhhcCCce
Confidence 4667778889999999999999999999999999873
No 250
>cd00186 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA and then rejoin the broken phosphodiester backbone. Proposed catalytic mechanism of single stranded DNA cleavage is by phosphoryl transfer through a tyrosine nucleophile using acid/base catalysis. Tyr is activated by a nearby group (not yet identified) acting as a general base for nucleophilic attack on the 5' phosphate of the scissile bond. Arg and Lys stabilize the pentavalent transition state. Glu then acts as a proton donor for the leaving 3'-oxygen, upon cleavage of the scissile strand.
Probab=35.92 E-value=41 Score=28.91 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=27.4
Q ss_pred CCCchHHHHHHHH------hCChhhHHHHHHHHHHHHHHHH
Q psy16706 48 SPPIHGARIVQEI------LGDPKLKSQWLTEVKGMADRII 82 (142)
Q Consensus 48 ~pp~~Ga~iv~~I------L~dp~L~~~W~~El~~m~~ri~ 82 (142)
.|..-|..++..+ |.||++.++|+.+|+.+..-=.
T Consensus 324 ~pT~~G~~li~~l~~~~~~l~~p~lTa~~E~~L~~I~~G~~ 364 (381)
T cd00186 324 IPTELGFAVIELLEKHFPELVDPEFTAKLEEKLDEIAEGKK 364 (381)
T ss_pred eECHHHHHHHHHHHHhchhccCHhHHHHHHHHHHHHHcCCC
Confidence 3666777777665 7899999999999999876433
No 251
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=35.52 E-value=2.2e+02 Score=24.28 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=17.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARIL 35 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~ 35 (142)
||.||. .|.++|..++ + +++..+++.
T Consensus 206 sK~~~g------~g~~~GG~vv-~-~~~~~~~~~ 231 (390)
T PRK08133 206 TKYLDG------QGRVLGGAVV-G-SKELMEEVF 231 (390)
T ss_pred ceeecC------CcceEeEEEE-c-CHHHHHHHH
Confidence 788988 8999977655 2 334444433
No 252
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=34.32 E-value=1.2e+02 Score=26.39 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=48.7
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQK 94 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~ 94 (142)
|.++|++.. +++..+.+... ..=.+|+..|.. +..+..+|+ .+.++ .+.+++..+.+.|.+.|++
T Consensus 293 G~Pi~av~~---~~~i~~~~~~~---~~~~T~~gnpl~-~aaa~a~L~--~~~~~------~l~~~~~~~g~~l~~~L~~ 357 (443)
T PRK06058 293 GLPLSAVTG---RAEIMDAPHPG---GLGGTYGGNPVA-CAAALAAIE--TIEED------DLVARARQIEALMTDRLRA 357 (443)
T ss_pred CCccEEEEE---cHHHHhhccCC---CCCCCCCCCHHH-HHHHHHHHH--HHHHc------CHHHHHHHHHHHHHHHHHH
Confidence 456666554 44554444321 122566665644 444444442 11111 2344445445555555554
Q ss_pred cCCCCCCccc--cccccceeecCCC-----------HHHHHHHhhhccceeeeCCC
Q psy16706 95 EGSNKPWNHI--TDQIGMFCYTGLN-----------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 95 ~~~~~~w~~i--~~q~GmF~~~gl~-----------~~qv~~~L~~~~~Iyl~~~G 137 (142)
.... +..+ ....|+|..+-+. ...+.+++ .+.+|++.+.|
T Consensus 358 l~~~--~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~~~~~~ 410 (443)
T PRK06058 358 LAAE--DDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAA-HAAGVIVLTCG 410 (443)
T ss_pred HHhh--CCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHH-HHCCeEEeccC
Confidence 3211 2222 3456666555341 12233324 36899998754
No 253
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=34.03 E-value=79 Score=27.65 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhc
Q psy16706 79 DRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHD 128 (142)
Q Consensus 79 ~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~ 128 (142)
..+..+|+++++.|+... ..-++=..|-|.++|.+.|=++. |...
T Consensus 211 ~~l~~aR~~l~~~Lr~~~----l~vv~l~~~~F~H~GTs~E~L~~-lt~~ 255 (414)
T PF07959_consen 211 SELREARQKLWKLLRGTP----LNVVPLPNGKFYHFGTSREYLEH-LTSD 255 (414)
T ss_pred HHHHHHHHHHHHHhhhcc----ccccccCCceEEEecCCHHHHHh-hccC
Confidence 456678999999997443 77788889999999999987776 7554
No 254
>KOG0033|consensus
Probab=32.33 E-value=73 Score=27.30 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=31.8
Q ss_pred hcCCCCchHHHHHHHHhC-Ch--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16706 45 FYSSPPIHGARIVQEILG-DP--------KLKSQWLTEVKGMADRIISMRQSLKDNLQK 94 (142)
Q Consensus 45 ~~S~pp~~Ga~iv~~IL~-dp--------~L~~~W~~El~~m~~ri~~~R~~L~~~l~~ 94 (142)
.|++..-.+-.+|...|+ || .|+..|..+.+.|+.++. |+..+|.|++
T Consensus 235 ~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~r~~~As~~H--~~dtvd~lrk 291 (355)
T KOG0033|consen 235 EWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICNRERVASAIH--RQDTVDCLKK 291 (355)
T ss_pred ccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcchHHHHHHhh--hHHHHHHHHH
Confidence 344444444557777766 55 466889999999998875 4555555553
No 255
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=31.91 E-value=51 Score=25.16 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=55.8
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCccccc----cccceee-cCCCHHHHHHHhhhccceee
Q psy16706 60 ILGDPKLKSQWLTEVKGMADRIISMRQSLK-DNLQKEGSNKPWNHITD----QIGMFCY-TGLNATQVRRKLIHDRSLKL 133 (142)
Q Consensus 60 IL~dp~L~~~W~~El~~m~~ri~~~R~~L~-~~l~~~~~~~~w~~i~~----q~GmF~~-~gl~~~qv~~~L~~~~~Iyl 133 (142)
+|+=..|+..=-+|++.+|++=...|..|- ..+..+..|..|.--.. -.|+|=. .-++| .. +.+||++
T Consensus 4 ~ltl~~l~tM~a~ElEd~R~~G~d~RR~Lt~aVm~~L~~P~gW~~naEy~sEFgGffPVq~Rfsp---~~---~~~~l~v 77 (144)
T PRK13701 4 ELTLNVLQTMSAQEYEDIRAAGSDERRELTHAVMRELDAPDGWTMNGEYGSEFGGFFPVQVRFTP---AH---ERFHLAL 77 (144)
T ss_pred EEcHHHHhccCHHHHHHHHHHhHHHHHHhHHHHHhccCCCccceeehhhhccccCeeeEEEEecC---CC---CCeEEEE
Confidence 344345666778899999999999999998 56789999999976543 4566632 23455 22 5789999
Q ss_pred eCCCcccC
Q psy16706 134 SNVEKCSQ 141 (142)
Q Consensus 134 ~~~Gri~~ 141 (142)
-+-|-+|+
T Consensus 78 CSpG~~sP 85 (144)
T PRK13701 78 CSPGDVSP 85 (144)
T ss_pred eCCCCCCc
Confidence 88888875
No 256
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=2e+02 Score=25.03 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc----ccccceeec--CCCHHHHHHHhhhccceeeeCC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHIT----DQIGMFCYT--GLNATQVRRKLIHDRSLKLSNV 136 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~----~q~GmF~~~--gl~~~qv~~~L~~~~~Iyl~~~ 136 (142)
++.+.++.+...+.+.+.|.+... +..+. .+.|++++. |+.++++...| .+.+|.+-..
T Consensus 298 ~~~i~~~e~~L~~~~~~~L~~~~~---v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L-~~~gI~vr~g 362 (405)
T COG0520 298 MEAIEAHERELTEYLLEGLSELPG---VEIYGPPDADRGGIVSFNVKGIHPHDVATLL-DEKGIAVRAG 362 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---eEEecCCcccCceEEEEEeCCCCHHHHHHHH-HhCCeEEEec
Confidence 558888888888888888876542 33333 468888885 88999999967 5566876544
No 257
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=31.59 E-value=1.3e+02 Score=24.70 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHH-------HHhCChhhHHHHHHHHHHHHHHHHH
Q psy16706 35 LSQLKILIRAFYSSPPIHGARIVQ-------EILGDPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 35 ~sql~~~~R~~~S~pp~~Ga~iv~-------~IL~dp~L~~~W~~El~~m~~ri~~ 83 (142)
...+...++..||.|+...-.+.. .+-.+..-..+|.+||..+..-+.+
T Consensus 78 ~~~~~~~v~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~ 133 (271)
T PRK13430 78 LEVVSDAVRQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILAS 133 (271)
T ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 345778889999999987655433 2334445567899999887766643
No 258
>PRK14724 DNA topoisomerase III; Provisional
Probab=31.58 E-value=56 Score=32.02 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=25.6
Q ss_pred CCCchHHHHHHHH-------hCChhhHHHHHHHHHHHHH
Q psy16706 48 SPPIHGARIVQEI-------LGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 48 ~pp~~Ga~iv~~I-------L~dp~L~~~W~~El~~m~~ 79 (142)
.|..-|-.++..+ |.+|++.++|+.+|+.+..
T Consensus 566 ~pT~~G~~li~~L~~~~~~~l~~pelTa~wE~~L~~I~~ 604 (987)
T PRK14724 566 IPTAKAFQLMTLLRGLGVEELSRAELTGEWEYKLAQMEK 604 (987)
T ss_pred eEcHHHHHHHHHHHhcCchhhcChhHHHHHHHHHHHHHh
Confidence 4566677777777 7799999999999988764
No 259
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=31.40 E-value=1.5e+02 Score=24.75 Aligned_cols=50 Identities=6% Similarity=0.238 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccceeee
Q psy16706 76 GMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 76 ~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~ 134 (142)
.+++++...|+.|.+.|...+ ++ .+ .. |..-+..++.+.+.| .+++|++.
T Consensus 265 ~~~~~l~~l~~~l~~~l~~~~-~~---~~---~~-i~~~~~~~~~~~~~L-~~~gi~v~ 314 (370)
T PRK05937 265 LARKQLFRLKEYFAQKFSSAA-PG---CV---QP-IFLPGISEQELYSKL-VETGIRVG 314 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCC-CC---CE---EE-EEeCChhHHHHHHHH-HHCCeeEE
Confidence 356777887877777664322 11 11 11 333345667777756 67799875
No 260
>KOG4623|consensus
Probab=31.00 E-value=63 Score=29.76 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.3
Q ss_pred hHHHHHHHHhCC--hhhHHHHHHHHHHHHHHHHHHH
Q psy16706 52 HGARIVQEILGD--PKLKSQWLTEVKGMADRIISMR 85 (142)
Q Consensus 52 ~Ga~iv~~IL~d--p~L~~~W~~El~~m~~ri~~~R 85 (142)
++++|+..-|.+ |.=...|.+||+.++++|.+|=
T Consensus 109 ~~Q~ik~~kLA~FeP~de~rydeeLevYR~~LE~mf 144 (611)
T KOG4623|consen 109 MNQLIKNRKLADFEPPDEQRYDEELEVYRKSLEEMF 144 (611)
T ss_pred hhHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHc
Confidence 578888888875 6667889999999999998863
No 261
>PF03923 Lipoprotein_16: Uncharacterized lipoprotein; InterPro: IPR005619 The function of this presumed lipoprotein is unknown. The family includes Escherichia coli YajG P36671 from SWISSPROT.
Probab=30.45 E-value=78 Score=23.71 Aligned_cols=45 Identities=33% Similarity=0.562 Sum_probs=29.1
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKS 68 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~ 68 (142)
++|+|.- =+.+-|++. ++.+.++...+.+- ..++..|++||+|..
T Consensus 112 ~tK~y~~------~~~~~g~~~---~~~~~ie~~ln~~l--------------~~~l~~i~~D~el~~ 156 (159)
T PF03923_consen 112 FTKNYSA------TSSREGALS---ASNEEIEKALNKLL--------------SDVLNDIANDPELIQ 156 (159)
T ss_pred EEEEEEe------eeecccCcC---CCHHHHHHHHHHHH--------------HHHHHHHHcCHHHHH
Confidence 3677777 666667754 45555555444332 467889999999865
No 262
>PRK06234 methionine gamma-lyase; Provisional
Probab=30.19 E-value=2.8e+02 Score=23.69 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=15.9
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARI 34 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v 34 (142)
||.|+. -|+|+|..++ ++ ++.++++
T Consensus 211 sK~l~g------~g~~~gG~v~-~~-~~~~~~l 235 (400)
T PRK06234 211 TKYLNG------HGDVIAGFVV-GK-EEFINQV 235 (400)
T ss_pred cccccC------CCCceeEEEE-ec-HHHHHHH
Confidence 799998 8999855533 33 3444444
No 263
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=29.97 E-value=1.3e+02 Score=20.16 Aligned_cols=27 Identities=11% Similarity=0.438 Sum_probs=19.2
Q ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 54 ARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 54 a~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
-+++...+.||++++.+.++=+..-+.
T Consensus 6 ~~~~~~~~~~~~~re~f~~dp~a~~~~ 32 (77)
T cd07321 6 EKLLEQLLVKPEVKERFKADPEAVLAE 32 (77)
T ss_pred HHHHHHHhcCHHHHHHHHhCHHHHHHH
Confidence 356777888888888887766655444
No 264
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=29.96 E-value=2.1e+02 Score=23.06 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc------cccceeec-----CCCHHHHHHHhhhccceeee
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEGSNKPWNHITD------QIGMFCYT-----GLNATQVRRKLIHDRSLKLS 134 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~------q~GmF~~~-----gl~~~qv~~~L~~~~~Iyl~ 134 (142)
++.+.++..+..+.+.+.|... || +..+.. ..++|++. +.+++++.+.| ++.+|++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~L~~~--~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L-~~~gI~~~ 297 (352)
T cd00616 230 LDEIIARRREIAERYKELLADL--PG-IRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEAL-KEAGIETR 297 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhcCC--CC-ccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHH-HHCCCCee
Confidence 3445555555555666666543 22 443322 23566654 56889998878 56688664
No 265
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=29.92 E-value=1.5e+02 Score=18.90 Aligned_cols=35 Identities=9% Similarity=0.354 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy16706 67 KSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPW 101 (142)
Q Consensus 67 ~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w 101 (142)
++++.++++..+..-...+..|++.++.+-...+|
T Consensus 18 ~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~ 52 (77)
T PF03993_consen 18 RKEFFEEQDAEREENLEKKEALIEEAEALAESEDW 52 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 56677788877777777899999988876654443
No 266
>TIGR01057 topA_arch DNA topoisomerase I, archaeal. This model describes topoisomerase I from archaea. These enzymes are involved in the control of DNA topology. DNA topoisomerase I belongs to the type I topoisomerases, which are ATP-independent.
Probab=29.76 E-value=57 Score=29.99 Aligned_cols=32 Identities=6% Similarity=0.255 Sum_probs=25.9
Q ss_pred CCCchHHHHHHHH------hCChhhHHHHHHHHHHHHH
Q psy16706 48 SPPIHGARIVQEI------LGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 48 ~pp~~Ga~iv~~I------L~dp~L~~~W~~El~~m~~ 79 (142)
.|..-|..++..+ |.||++.+.|+..|+.+.+
T Consensus 508 ~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~ 545 (618)
T TIGR01057 508 KVTPLGEAVIETLQRYCPEIISEELTRRFESKLEDIMS 545 (618)
T ss_pred eeehHHHHHHHHHHHhchhhcChhhHHHHHHHHHHHHc
Confidence 3666778877777 8999999999999987654
No 267
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=29.74 E-value=1.5e+02 Score=19.67 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q psy16706 69 QWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITD 106 (142)
Q Consensus 69 ~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~ 106 (142)
.-.+|++....+-.++.-.|+|-.+ +.|.+|.-|+.
T Consensus 6 eLk~evkKL~~~A~~~kmdLHDLaE--dLP~~w~~i~~ 41 (66)
T PF05082_consen 6 ELKKEVKKLNRKATQAKMDLHDLAE--DLPTNWEEIPE 41 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--CTTTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--ccchhHHHHHH
Confidence 3466777777777777888887543 38999998864
No 268
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.47 E-value=1.7e+02 Score=22.21 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16706 64 PKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSN 98 (142)
Q Consensus 64 p~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~ 98 (142)
++--.+-.+|+..++..|.+.|..+..++.+.|.|
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~Gv~ 122 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDELRVKRDIAMAEAGIP 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33335567899999999999898888888887755
No 269
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=29.25 E-value=85 Score=20.64 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=22.3
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 56 IVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDN 91 (142)
Q Consensus 56 iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~ 91 (142)
=++.|-.|| .||..+..|+..+|..+.+-
T Consensus 29 kl~kitK~p-------~El~~i~~kl~~~R~~FLn~ 57 (62)
T PF06034_consen 29 KLKKITKNP-------KELQEIEKKLQELRQNFLNF 57 (62)
T ss_pred HHHhccCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 345566665 48889999999999998854
No 270
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.88 E-value=1.1e+02 Score=19.56 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=17.6
Q ss_pred ceeEEEeCCHHHHHHHHHHHHH
Q psy16706 19 GAFSIVSADKDEAARILSQLKI 40 (142)
Q Consensus 19 Gal~vv~~~~~~~~~v~sql~~ 40 (142)
|++.+++++++.++++..+++.
T Consensus 60 ~~v~~l~~~~~~~~~v~~~l~~ 81 (85)
T PF08544_consen 60 PTVFALCKDEDDAERVAEALRE 81 (85)
T ss_dssp SEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHH
Confidence 5677888899999998887753
No 271
>PF03592 Terminase_2: Terminase small subunit ; InterPro: IPR005335 Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].; GO: 0006323 DNA packaging; PDB: 3ZQP_B 2CMP_A 3ZQO_C 3ZQN_B 3ZQQ_B 3ZQM_D.
Probab=28.46 E-value=1.1e+02 Score=22.15 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16706 38 LKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKE 95 (142)
Q Consensus 38 l~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~ 95 (142)
-+.-+++-| .|.......+.+|+||..++.-.+-.+.+..+..--...+.+.|...
T Consensus 19 t~Aa~~AGy--s~ktA~~~asrLL~n~~V~~~I~~~~~e~~~~~~~t~~~vl~~l~~i 74 (144)
T PF03592_consen 19 TQAAIKAGY--SEKTARANASRLLRNPKVKAYIEELMKEREERAIITADEVLEELTEI 74 (144)
T ss_dssp HHHHHTTTS---CTTHHHHHHHHTTSHHHHHHHHHHHHHHSSS-S--HHHHHHHHHHH
T ss_pred HHHHHhhcC--CcCcHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344567767 45556778899999999988777666776655544566666666543
No 272
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=28.43 E-value=90 Score=30.25 Aligned_cols=110 Identities=13% Similarity=0.172 Sum_probs=71.7
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHHHhhcC------CCCch-HHHHHHHHhC-----C--hhhHHHHHHHHHHHHHHHHHHH
Q psy16706 20 AFSIVSADKDEAARILSQLKILIRAFYS------SPPIH-GARIVQEILG-----D--PKLKSQWLTEVKGMADRIISMR 85 (142)
Q Consensus 20 al~vv~~~~~~~~~v~sql~~~~R~~~S------~pp~~-Ga~iv~~IL~-----d--p~L~~~W~~El~~m~~ri~~~R 85 (142)
...+|.=..+.+.+++..|...-+-+.. +=|.| ...+|..|-. . =.+...|.+==+..-.||+..|
T Consensus 152 ~~~FVNLr~~d~~~le~NL~~a~~NM~~~~~l~l~~~~~~N~~LVn~~NKLvYLGrli~av~~SW~~Le~kcl~rI~el~ 231 (839)
T PF06070_consen 152 EIDFVNLRAEDVQELEENLRAARSNMFWYTPLKLNLDRHENGPLVNAINKLVYLGRLIVAVSTSWEELEEKCLSRINELC 231 (839)
T ss_pred ccceeecCHHHHHHHHHHHHHHHhccEEEEeeecccccccCccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777887888888888888877665543 22233 2223322100 0 1356778776666788999999
Q ss_pred HHHHHHHHhcCCCCCCccccc----cccceeecCCCHHHHHHHhhhccceeeeC
Q psy16706 86 QSLKDNLQKEGSNKPWNHITD----QIGMFCYTGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 86 ~~L~~~l~~~~~~~~w~~i~~----q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
+.|..+|+.+++ |+...- +... .|-+.+-+-++|.++|+||-..
T Consensus 232 ~~L~~elr~~~~---F~~~Y~~niLk~~V---dg~s~~~lL~~L~EDf~Iye~a 279 (839)
T PF06070_consen 232 KRLVKELRRNRS---FESNYCRNILKHPV---DGESVDSLLEMLTEDFEIYEDA 279 (839)
T ss_pred HHHHHHHHhCCc---HHHHHHHHHHhCcC---CcccHHHHHHHHHHHHHHHHhh
Confidence 999999988753 432211 2222 5777887777799999999643
No 273
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=28.41 E-value=79 Score=26.77 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhccc
Q psy16706 84 MRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRS 130 (142)
Q Consensus 84 ~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~ 130 (142)
.|..+-.+.... ...||..++|+++++|+. +.++.+
T Consensus 117 ~RG~~M~~a~p~----------~~g~Maav~gl~~e~v~~-~~~~~~ 152 (310)
T COG0331 117 KRGKLMQEAVPR----------GEGGMAAVLGLDDEQVEK-ACEEAA 152 (310)
T ss_pred HHHHHHHHHccC----------CCccHHHHcCCCHHHHHH-HHHHhc
Confidence 477766554322 358999999999999999 657665
No 274
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=28.02 E-value=2e+02 Score=24.74 Aligned_cols=104 Identities=10% Similarity=0.129 Sum_probs=48.2
Q ss_pred ccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHH---HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGAR---IVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDN 91 (142)
Q Consensus 15 geRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~---iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~ 91 (142)
|.++|++.. +++..+.+... ..=.+|+.+|.. +. -+.+++.++ .+.+.+..+.+++...-+ .
T Consensus 272 G~pigav~~---~~~i~~~~~~~---~~~~T~~gnpl~-~aaa~a~l~~l~~~----~~~~~~~~~g~~l~~~l~----~ 336 (421)
T PRK09792 272 GMPLSGVVG---NANIMDAPAPG---GLGGTYAGNPLA-VAAAHAVLNIIDKE----SLCERANQLGQRLKNTLI----D 336 (421)
T ss_pred CCceEEEEE---cHHHHhccCCC---CcCCCCCCCHHH-HHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHH----H
Confidence 468888433 44444444321 122466666644 33 334455544 244445555555443222 2
Q ss_pred HHhcCCCCCCccccccccceeecCCC-H----------HHHHHHhhhccceeeeCCC
Q psy16706 92 LQKEGSNKPWNHITDQIGMFCYTGLN-A----------TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 92 l~~~~~~~~w~~i~~q~GmF~~~gl~-~----------~qv~~~L~~~~~Iyl~~~G 137 (142)
|.+ ..| .-.-+...|++.-+-+. + ..+...+ .+++|++.+.|
T Consensus 337 l~~-~~p--~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~~~g 389 (421)
T PRK09792 337 AKE-SVP--AIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRA-LAQGLLLLTCG 389 (421)
T ss_pred HHH-hCC--CcceecccceEEEEEecCCccCCcchHHHHHHHHHH-HHCCcEEeecC
Confidence 222 112 11123445777766552 1 2233334 46888886544
No 275
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=27.98 E-value=3.2e+02 Score=24.07 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceee---cCCCHHHHHHHhhhccceeeeC
Q psy16706 71 LTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCY---TGLNATQVRRKLIHDRSLKLSN 135 (142)
Q Consensus 71 ~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~---~gl~~~qv~~~L~~~~~Iyl~~ 135 (142)
..|.+++.+++...-+.|.++|.+.|.+- +.--|+.+=+..- .|++..+++++| ++.+|.+-+
T Consensus 295 ~~~fk~Ya~qVv~NAk~La~~L~~~G~~v-~~ggTd~H~vlvd~~~~~~~g~~a~~~L-e~~gI~vnk 360 (399)
T PF00464_consen 295 SPEFKEYAKQVVKNAKALAEALQERGFKV-VTGGTDNHQVLVDLRSFGIDGKEAEKAL-EEAGIIVNK 360 (399)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTT-EE-GGGS-SSSEEEEEGGGGTS-HHHHHHHH-HHTTEE-EE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCcEE-EECCCCCCeEEEEecccccchHHHHHHH-HhcCeeecc
Confidence 34567889999998999999999888432 1111222222222 267888999856 899998754
No 276
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=27.89 E-value=3.9e+02 Score=22.97 Aligned_cols=108 Identities=13% Similarity=-0.004 Sum_probs=53.0
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
+|.|+- -|..+|..+ ++++++..+++.. ..+..-.+++.+.+.++..-|. |.++ ..+++
T Consensus 205 tK~l~g------~~~~~~G~v-v~~~~~l~~~l~~----~~~~~g~~~s~~~a~l~~~gl~-------tl~~---r~~~~ 263 (405)
T PRK08776 205 TKYING------HSDVVGGAV-VARDAELHQQLVW----WANALGLTGSPFDAFLTLRGLR-------TLDA---RLRVH 263 (405)
T ss_pred ceeecC------CCCceEEEE-EeCCHHHHHHHHH----HHHhcCCCCCHHHHHHHHhhhC-------cHHH---HHHHH
Confidence 577777 677666654 4566655555433 2222222355566666553332 3332 33344
Q ss_pred HHHHHHHHHHHHh------cCCCCCCcc---------ccccccceeecC-CCHHHHHHHhhhccce
Q psy16706 82 ISMRQSLKDNLQK------EGSNKPWNH---------ITDQIGMFCYTG-LNATQVRRKLIHDRSL 131 (142)
Q Consensus 82 ~~~R~~L~~~l~~------~~~~~~w~~---------i~~q~GmF~~~g-l~~~qv~~~L~~~~~I 131 (142)
.+....+.+.|++ ...|+-=+| ...-.|||++.= -+.+++.+ +.+.-.+
T Consensus 264 ~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~-f~~~l~l 328 (405)
T PRK08776 264 QENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRA-FVDGLRY 328 (405)
T ss_pred HHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHH-HHHhCCc
Confidence 4445555566653 333432222 112367888872 14555554 5454444
No 277
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=27.75 E-value=17 Score=27.62 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=32.5
Q ss_pred ccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q psy16706 4 NYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 4 nfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~ 83 (142)
.+|+..||||-|..+. .+++.+.++...--.+.=-+|+.++... ++ .+++.+|+....+.|++
T Consensus 30 ~~~ikaTfFv~g~~~~------~~~~~~~~i~~~Gheig~Ht~~H~~~~~-------~~----~~~~~~ei~~~~~~l~~ 92 (191)
T TIGR02764 30 EYDVKATFFLSGSWAE------RHPELVKEIVKDGHEIGSHGYRHKNYTT-------LE----DEKIKKDILRAQEIIEK 92 (191)
T ss_pred HcCCCEEEEeccHHHH------HCHHHHHHHHhCCCEEEECCcCCCCccc-------CC----HHHHHHHHHHHHHHHHH
Confidence 3556667777776653 2344444444333334444677665321 11 24556666665555544
No 278
>PRK06148 hypothetical protein; Provisional
Probab=27.24 E-value=1.8e+02 Score=28.48 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=19.2
Q ss_pred cccccceeecCCC------------HHHHHHHhhhccceeeeCCC
Q psy16706 105 TDQIGMFCYTGLN------------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 105 ~~q~GmF~~~gl~------------~~qv~~~L~~~~~Iyl~~~G 137 (142)
....|+|.-+-+. ...+..+| .+++|++.+.|
T Consensus 935 VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~-~~~Gvl~~~~g 978 (1013)
T PRK06148 935 VRGMGLFLGIELVTDRKTKAPATAIARYVKNGA-RERGILIGTEG 978 (1013)
T ss_pred EeeeceEEEEEecCCccccCccHHHHHHHHHHH-HhCCeEEeccC
Confidence 4466777655332 12355546 46899998766
No 279
>PRK05582 DNA topoisomerase I; Validated
Probab=27.19 E-value=70 Score=29.61 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCCchHHHHHHHH------hCChhhHHHHHHHHHHHH
Q psy16706 47 SSPPIHGARIVQEI------LGDPKLKSQWLTEVKGMA 78 (142)
Q Consensus 47 S~pp~~Ga~iv~~I------L~dp~L~~~W~~El~~m~ 78 (142)
=.|..-|..++..+ |.||++.+.|+.+|+.+.
T Consensus 495 l~pT~~G~~l~~~l~~~~~~l~~p~lTa~~E~~L~~I~ 532 (650)
T PRK05582 495 LVPTELGEIVNELLEEFFPDIVDVEFTAEMEEKLDEIE 532 (650)
T ss_pred EeecHHHHHHHHHHHHhchhhcCHHHHHHHHHHHHHHH
Confidence 44667788876666 789999999999997764
No 280
>PRK06149 hypothetical protein; Provisional
Probab=27.08 E-value=1.9e+02 Score=28.10 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=21.0
Q ss_pred ccccccceeecCCC------------HHHHHHHhhhccceeeeCCCc
Q psy16706 104 ITDQIGMFCYTGLN------------ATQVRRKLIHDRSLKLSNVEK 138 (142)
Q Consensus 104 i~~q~GmF~~~gl~------------~~qv~~~L~~~~~Iyl~~~Gr 138 (142)
.....|+|.-+-+. ...+..+| .+.+|++.+.|.
T Consensus 894 ~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l-~~~Gvl~~~~g~ 939 (972)
T PRK06149 894 AVHGMGLYLGVELVRDRQTLEPATEETAAICDRL-LELGVIMQPTGD 939 (972)
T ss_pred EEeecceEEEEEEecCcccCCCChHHHHHHHHHH-HhCCeEEeecCC
Confidence 34567777655331 23455556 468999998874
No 281
>KOG4010|consensus
Probab=26.89 E-value=2e+02 Score=23.16 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=29.3
Q ss_pred CchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 50 PIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKD 90 (142)
Q Consensus 50 p~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~ 90 (142)
|...+..-..+.-..+-+++|..||...-+-|...|+-|..
T Consensus 29 ~~~a~s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaA 69 (208)
T KOG4010|consen 29 TDVAASASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAA 69 (208)
T ss_pred cchhhhhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444334555789999999999999999998874
No 282
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=26.20 E-value=3.5e+02 Score=23.50 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCchHHHHHHHHhCChhhH---HHHHHHHHHHHH
Q psy16706 49 PPIHGARIVQEILGDPKLK---SQWLTEVKGMAD 79 (142)
Q Consensus 49 pp~~Ga~iv~~IL~dp~L~---~~W~~El~~m~~ 79 (142)
+..-|+-||+.+-+=|..+ +.|.+|++.-+-
T Consensus 257 CT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~ 290 (382)
T COG1103 257 CTVRGAPIVTLMASFPHVVERVKRWDEEVEKARW 290 (382)
T ss_pred ccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999988776 579999987553
No 283
>TIGR01051 topA_bact DNA topoisomerase I, bacterial. This model describes DNA topoisomerase I among the members of bacteria. DNA topoisomerase I transiently cleaves one DNA strand and thus relaxes negatively supercoiled DNA during replication, transcription and recombination events.
Probab=26.11 E-value=74 Score=29.28 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=26.3
Q ss_pred CCCCchHHHHHHHH------hCChhhHHHHHHHHHHHHH
Q psy16706 47 SSPPIHGARIVQEI------LGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 47 S~pp~~Ga~iv~~I------L~dp~L~~~W~~El~~m~~ 79 (142)
=-|..-|..++..+ |.+|++.+.|+..|+.+.+
T Consensus 501 l~pT~~G~~li~~l~~~~~~l~~p~lTa~~E~~L~~I~~ 539 (610)
T TIGR01051 501 LYPTELGFAVTDLLEKHFGDVVDYDFTAKMEKDLDEIAE 539 (610)
T ss_pred EeECHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHc
Confidence 34667788877766 7899999999999987653
No 284
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=26.03 E-value=51 Score=27.10 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=21.2
Q ss_pred hCChhhHHHHHHHHHHHHHHHHH
Q psy16706 61 LGDPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 61 L~dp~L~~~W~~El~~m~~ri~~ 83 (142)
|+|++|++.-.++|+.|.+||.+
T Consensus 169 lt~~eLrk~a~~~L~~makRi~s 191 (233)
T PF06992_consen 169 LTDEELRKRAKKELKAMAKRIAS 191 (233)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC
Confidence 88999999999999999999886
No 285
>PRK08173 DNA topoisomerase III; Validated
Probab=25.98 E-value=72 Score=30.80 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=25.3
Q ss_pred CCCCchHHHHHHHH-------hCChhhHHHHHHHHHHHHH
Q psy16706 47 SSPPIHGARIVQEI-------LGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 47 S~pp~~Ga~iv~~I-------L~dp~L~~~W~~El~~m~~ 79 (142)
-.|..-|..++..+ |.+|++.++|+..|+.+..
T Consensus 546 l~pT~~G~~li~~l~~~~~~~l~~p~lTa~wE~~L~~I~~ 585 (862)
T PRK08173 546 LIPTAKAFQLMTLLRGLGVEELTSPELTGEWEYKLSQIER 585 (862)
T ss_pred echhHHHHHHHHHHhhcCcccccChhHHHHHHHHHHHHHc
Confidence 34666777666665 6799999999999987654
No 286
>PHA00415 25 baseplate wedge subunit
Probab=25.68 E-value=1.2e+02 Score=22.43 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=33.9
Q ss_pred cccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhC--ChhhH
Q psy16706 16 ERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG--DPKLK 67 (142)
Q Consensus 16 eRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~--dp~L~ 67 (142)
-..|-+..+...+...+.+.- +-....+.--+-|.+|+.+-.-+.. ||.+.
T Consensus 19 ~~tg~l~~~~~~~sI~qsI~~-IL~T~~GER~~rPdfG~~l~~l~f~p~~~~~~ 71 (131)
T PHA00415 19 PWNKDVSAVKGARAIKNSLLG-IVTTRKGERPFDPNFGCDISDQLFENMDPLTA 71 (131)
T ss_pred CcCCCeeeeCCHHHHHHHHHH-HhCCCCCccccCcccCcchHHHhcCCCCHHHH
Confidence 456777776665544444443 4455567777889999988888887 55543
No 287
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=25.53 E-value=3.6e+02 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy16706 74 VKGMADRIISMRQSLKDNLQKEG 96 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~~~~ 96 (142)
++.+.+|...+.+.|.+.|++.+
T Consensus 270 ~e~i~~r~~~l~~~l~~~l~~~~ 292 (378)
T PRK03080 270 LDALIARTAANASVLYDWAEKTP 292 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 57888888888888888888765
No 288
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.50 E-value=1.3e+02 Score=20.29 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 67 KSQWLTEVKGMADRIISMRQSLKDNLQ 93 (142)
Q Consensus 67 ~~~W~~El~~m~~ri~~~R~~L~~~l~ 93 (142)
.++|.+|++...+++..-|+. ...++
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~-L~~~~ 79 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREV-LQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 478999999999999985544 44443
No 289
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=25.45 E-value=1.1e+02 Score=22.41 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhhhcccee
Q psy16706 87 SLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLK 132 (142)
Q Consensus 87 ~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iy 132 (142)
.+...+++.|.++ .|.+- .+|.++++|.. +|++++|.
T Consensus 63 ~~L~~aK~~GFsD------~~IA~--l~~~~e~~vr~-~R~~~~i~ 99 (123)
T PF02787_consen 63 ELLRKAKRLGFSD------RQIAR--LWGVSEEEVRE-LRKEHGIV 99 (123)
T ss_dssp HHHHHHHHTT--H------HHHHH--HHTS-HHHHHH-HHHHHT--
T ss_pred HHHHHHHHcCCCH------HHHHh--ccCCCHHHHHH-HHHHcCCc
Confidence 4555666777432 12222 26899999999 99998875
No 290
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=25.38 E-value=84 Score=27.19 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16706 68 SQWLTEVKGMADRIISMRQSLK 89 (142)
Q Consensus 68 ~~W~~El~~m~~ri~~~R~~L~ 89 (142)
+||++|...|..-+++.|.+|.
T Consensus 111 KqWLEERR~lQgEmQ~LrDKLA 132 (351)
T PF07058_consen 111 KQWLEERRFLQGEMQQLRDKLA 132 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998888765
No 291
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=24.86 E-value=3.8e+02 Score=21.82 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHh-hcCCCCchHHHHHHHHhC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-c
Q psy16706 30 EAARILSQLKILIRA-FYSSPPIHGARIVQEILG---DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNH-I 104 (142)
Q Consensus 30 ~~~~v~sql~~~~R~-~~S~pp~~Ga~iv~~IL~---dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~-i 104 (142)
+.+.+++.+..+... .|...|.....+...++. ++++.+++.+++... ......+..+.+.|.+.-....|.. +
T Consensus 112 e~~~lk~~l~~~~~~~~~~~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~ 190 (282)
T TIGR03499 112 ELEALRELLERLLAGLAWLQRDPEGAKLLERLLRAGVSPELARELLEKLPER-ADAEDAWRWLREALEKMLPVKPEEDEI 190 (282)
T ss_pred HHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHhccCCccccc
Confidence 455566666655543 455555566777777766 588889999988752 1222234444444433221111211 2
Q ss_pred cccccceeecCC
Q psy16706 105 TDQIGMFCYTGL 116 (142)
Q Consensus 105 ~~q~GmF~~~gl 116 (142)
..+.+.+.++|-
T Consensus 191 ~~~~~vi~~vGp 202 (282)
T TIGR03499 191 LEQGGVIALVGP 202 (282)
T ss_pred cCCCeEEEEECC
Confidence 335567777764
No 292
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.79 E-value=1.8e+02 Score=20.49 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16706 72 TEVKGMADRIISMRQSLKDNLQK 94 (142)
Q Consensus 72 ~El~~m~~ri~~~R~~L~~~l~~ 94 (142)
.|++.+.+.+..-|..+|.++.+
T Consensus 36 ~~~~~lV~~~N~~R~~~Y~~iA~ 58 (95)
T PF07027_consen 36 AEVRALVAAINADRRALYQEIAK 58 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888866543
No 293
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=24.76 E-value=1.8e+02 Score=18.00 Aligned_cols=53 Identities=11% Similarity=0.266 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16706 30 EAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNL 92 (142)
Q Consensus 30 ~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l 92 (142)
....+.+.+..+ .+.|+-..+.+.. +...+|...+..+.+.+..+.+.|....
T Consensus 26 ~~~~l~~~~~~l-~~~W~G~a~~af~---------~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 78 (86)
T PF06013_consen 26 QLQQLESSIDSL-QASWQGEAADAFQ---------DKFEEWNQAFRQLNEALEELSQALRQAA 78 (86)
T ss_dssp HHHHHHHHHHHH-GGGBTSSTSHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhCCchHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666 8899955444433 5567899999999999998888877543
No 294
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=24.58 E-value=4.2e+02 Score=22.13 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=52.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHh-hcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRA-FYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~-~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~r 80 (142)
||.+|. .|...|..++ +++++..+++.. ..+. .+..+| ..+.++..-|.+ +....+|
T Consensus 185 tK~l~g------~~~~~gG~v~-~~~~~l~~~l~~----~~~~~g~~~~p-~~a~~~l~~l~t----------l~~r~~~ 242 (369)
T cd00614 185 TKYIGG------HSDVIAGVVV-GSGEALIQRLRF----LRLALGTILSP-FDAWLLLRGLKT----------LPLRMER 242 (369)
T ss_pred ceeccC------CCCceEEEEE-eCcHHHHHHHHH----HHHhhCCCCCH-HHHHHHHcCCCC----------HHHHHHH
Confidence 677777 6754444333 454445554443 2222 233333 334443333322 2222344
Q ss_pred HHHHHHHHHHHHHhcC------CCCC--------Cc-cccccccceeecCC-CHHHHHHHhhhcccee
Q psy16706 81 IISMRQSLKDNLQKEG------SNKP--------WN-HITDQIGMFCYTGL-NATQVRRKLIHDRSLK 132 (142)
Q Consensus 81 i~~~R~~L~~~l~~~~------~~~~--------w~-~i~~q~GmF~~~gl-~~~qv~~~L~~~~~Iy 132 (142)
..+....|.+.|++.. .|+- |. ......|||++.== +++++.+ +.+.-.++
T Consensus 243 ~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~-f~~~l~~~ 309 (369)
T cd00614 243 HSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKK-FLNALKLF 309 (369)
T ss_pred HHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHH-HHHcCCcc
Confidence 4555666677777654 3320 00 01235888887621 6777766 55665555
No 295
>PF11957 efThoc1: THO complex subunit 1 transcription elongation factor; InterPro: IPR021861 The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm.
Probab=24.54 E-value=1.2e+02 Score=27.06 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHH
Q psy16706 28 KDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTE 73 (142)
Q Consensus 28 ~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~E 73 (142)
++.+..+...+...++.++...|.+ +++|.+||..++.--.|+.|
T Consensus 290 ~~wi~~~~~~v~~~L~~~~p~G~~F-~~~v~~iL~rE~nW~~WK~~ 334 (491)
T PF11957_consen 290 KKWIKETKKRVYKLLKETPPDGPQF-ARMVEHILEREKNWVRWKNE 334 (491)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 3456667777778888888777755 88999999998888889865
No 296
>PF12411 Choline_sulf_C: Choline sulfatase enzyme C terminal
Probab=24.21 E-value=1.2e+02 Score=19.35 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcccccc--ccceeecCCCHHHHHH
Q psy16706 83 SMRQSLKDNLQKEGSNKPWNHITDQ--IGMFCYTGLNATQVRR 123 (142)
Q Consensus 83 ~~R~~L~~~l~~~~~~~~w~~i~~q--~GmF~~~gl~~~qv~~ 123 (142)
..|..++++|++ |..-.|||=|-+ +..|+=-.++-+.++.
T Consensus 9 rrRr~V~~AL~~-G~~~~WDyqP~~das~~YvRnh~~Ld~lE~ 50 (54)
T PF12411_consen 9 RRRRFVYSALKQ-GRFTSWDYQPPQDASQRYVRNHMDLDDLER 50 (54)
T ss_pred HHHHHHHHHHHc-CCCCCCCCCCCcCcHHHHHHcCCCHHHHHH
Confidence 345556678765 555578887644 4455544555555544
No 297
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=24.15 E-value=2.9e+02 Score=21.46 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCHHHHHHHhh
Q psy16706 67 KSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKLI 126 (142)
Q Consensus 67 ~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl~~~qv~~~L~ 126 (142)
.+...+|+..+-..-..+|..+...|. +||| +|++.+++.. |.
T Consensus 45 ~~~~~~~I~~lE~eaD~i~~~i~~~L~--------------~~fi--tP~dReDi~~-L~ 87 (216)
T TIGR00153 45 DEELRKEIIEIEHEADEIKREIRLNLE--------------KGAF--LPNDRRDLLE-LA 87 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc--------------cccc--CcCcHHHHHH-HH
Confidence 445677777777777777777776653 2343 8888888876 54
No 298
>cd08642 DNA_pol_A_pol_I_A Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. P
Probab=24.03 E-value=59 Score=28.45 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=46.8
Q ss_pred cccCCCCcc-cccceeEEEeCCHHHHHH---------------------------HHHHHHHHHHhhcCCCCch------
Q psy16706 7 IHFTCLPVG-ERVGAFSIVSADKDEAAR---------------------------ILSQLKILIRAFYSSPPIH------ 52 (142)
Q Consensus 7 L~~~~~~Yg-eRvGal~vv~~~~~~~~~---------------------------v~sql~~~~R~~~S~pp~~------ 52 (142)
+|.++..+| -|+|-++.-.+|...+.+ ..+-+...+|..+-.||-+
T Consensus 97 ih~~~~~~gat~TGRlss~~pnlQNiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~iR~aFva~~G~~lvsaD 176 (378)
T cd08642 97 VRGLLQFYGANRTGRWAGRLVQVQNLPRNYLKDLDLARELVKSGDFDALELLYGSVPDVLSQLIRTAFIPSEGHRFIVSD 176 (378)
T ss_pred eeeeeeeecchhccccccCCCCcccCCCCcccchHHHHHHhhccchhhhhhhccccccHHHHHhHHheecCCCCEEEEec
Confidence 356666688 899999887776655443 1344556688888766632
Q ss_pred ----HHHHHHHHhCChhhHHHHHHH
Q psy16706 53 ----GARIVQEILGDPKLKSQWLTE 73 (142)
Q Consensus 53 ----Ga~iv~~IL~dp~L~~~W~~E 73 (142)
-.||++.+-.||.|.+...+-
T Consensus 177 ySQIElRVLAhlS~D~~li~af~~g 201 (378)
T cd08642 177 FSAIEARVIAWLAGEQWRLDVFATH 201 (378)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHhcC
Confidence 268899999999998877644
No 299
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.02 E-value=1.7e+02 Score=26.06 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=51.2
Q ss_pred cccccceeEEEeCCH------------HHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q psy16706 14 VGERVGAFSIVSADK------------DEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRI 81 (142)
Q Consensus 14 YgeRvGal~vv~~~~------------~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri 81 (142)
.....|.|....++. +..+.+...++.+++..-.......+..+..+.. .||..=.++|+++...+
T Consensus 258 ~~~~~~~L~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~--~lR~~~~e~l~~l~~~~ 335 (574)
T smart00638 258 EPRNRGSLVYEFESTNQQLPIRLLKAPSNEVQIVEVLKHLVQDIASDVQEPAAAKFLRLVR--LLRTLSEEQLEQLWRQL 335 (574)
T ss_pred ccccccceEEEecCccccCChhhhcCCCchhhHHHHHHHHHHHHHHHhccchHHHHHHHHH--HHHhCCHHHHHHHHHHH
Confidence 345566666655432 3344555556666665555544334443333332 23333334444444433
Q ss_pred ----HHHHHHHHHHHHhcCCCCCCccccc
Q psy16706 82 ----ISMRQSLKDNLQKEGSNKPWNHITD 106 (142)
Q Consensus 82 ----~~~R~~L~~~l~~~~~~~~w~~i~~ 106 (142)
..+|..+.|+|-..||+....+|..
T Consensus 336 ~~~~~~~r~~~~Dal~~~GT~~a~~~i~~ 364 (574)
T smart00638 336 YEKKKKARRIFLDAVAQAGTPPALKFIKQ 364 (574)
T ss_pred HhCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5688999999999999877766654
No 300
>PRK06599 DNA topoisomerase I; Validated
Probab=23.75 E-value=88 Score=29.13 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=25.1
Q ss_pred CCCCchHHHHHHHH------hCChhhHHHHHHHHHHHH
Q psy16706 47 SSPPIHGARIVQEI------LGDPKLKSQWLTEVKGMA 78 (142)
Q Consensus 47 S~pp~~Ga~iv~~I------L~dp~L~~~W~~El~~m~ 78 (142)
=-|..-|..++..+ |.||++.++|+..|+.+.
T Consensus 509 l~~T~~G~~l~~~l~~~~~~l~~p~lTa~~E~~L~~I~ 546 (675)
T PRK06599 509 FIPTDLGRIVNDFLVEHFPKYVDYDFTAGLEDELDEIA 546 (675)
T ss_pred EeecHHHHHHHHHHHHhchhhCCHHHHHHHHHHHHHHH
Confidence 34677788877644 689999999999998764
No 301
>PLN02256 arogenate dehydrogenase
Probab=23.67 E-value=2.2e+02 Score=23.68 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=25.8
Q ss_pred HHHHHHHHh-----CChhhHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy16706 53 GARIVQEIL-----GDPKLKSQWL-------TEVKGMADRIISMRQSLKDNL 92 (142)
Q Consensus 53 Ga~iv~~IL-----~dp~L~~~W~-------~El~~m~~ri~~~R~~L~~~l 92 (142)
|-+-.+.|. +||++...-. +.++.+.+.+.++|+.|+..|
T Consensus 239 gfrd~tria~r~~~~~p~lw~dI~~~N~~~~~~i~~~~~~l~~~~~~l~~~~ 290 (304)
T PLN02256 239 GYETLLRLVENTSSDSFDLYYGLFMYNPNATEELERLELAFDSVKKQLFGRL 290 (304)
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444444 4677653322 677888888888888888665
No 302
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=23.10 E-value=53 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=9.1
Q ss_pred CCCccccccccceeecCCCHHHHHHHhhhccceeeeCCCcccC
Q psy16706 99 KPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLKLSNVEKCSQ 141 (142)
Q Consensus 99 ~~w~~i~~q~GmF~~~gl~~~qv~~~L~~~~~Iyl~~~Gri~~ 141 (142)
|...-+.+..|=|+|+ |++++.. + .-|+-..||||.
T Consensus 141 g~ltGv~DdrGkfIyI--s~eE~~~-v----a~fi~~rGRvsi 176 (188)
T PF09756_consen 141 GRLTGVIDDRGKFIYI--SEEEMEA-V----AKFIKQRGRVSI 176 (188)
T ss_dssp SSS-EEE-TT--EEE----------------------------
T ss_pred CCceeeEcCCCCeEEe--cHHHHHH-H----HHHHHHcCCccH
Confidence 4578899999999986 5565554 3 458888899885
No 303
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=22.94 E-value=1.9e+02 Score=23.77 Aligned_cols=40 Identities=13% Similarity=0.400 Sum_probs=34.6
Q ss_pred HhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q psy16706 43 RAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 43 R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~ 83 (142)
|-.|+-|-..-..+++.+-.||+ +.+|.+|++.+-.+|++
T Consensus 8 Rr~~aDP~~~d~e~l~a~~~~~~-~~~F~~d~~~lD~~l~~ 47 (232)
T PF11859_consen 8 RRIYADPNDQDPEFLEAAKASPA-NQKFVDDLKQLDAQLEQ 47 (232)
T ss_pred HHHHcCCccCCHHHHHHHHhCHH-HHHHHHHHHHHHHHHHH
Confidence 77899999999999999999988 56688999988877765
No 304
>PRK07219 DNA topoisomerase I; Validated
Probab=22.91 E-value=89 Score=29.85 Aligned_cols=33 Identities=12% Similarity=0.366 Sum_probs=26.5
Q ss_pred CCCCchHHHHHHHH------hCChhhHHHHHHHHHHHHH
Q psy16706 47 SSPPIHGARIVQEI------LGDPKLKSQWLTEVKGMAD 79 (142)
Q Consensus 47 S~pp~~Ga~iv~~I------L~dp~L~~~W~~El~~m~~ 79 (142)
-.|..-|..++..+ |.||++.++|+.+|+.+.+
T Consensus 516 l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~L~~I~~ 554 (822)
T PRK07219 516 PRPTDLGIAVIEALEKYAPEIVSEEMTAQLEADMQAIED 554 (822)
T ss_pred eeecHHHHHHHHHHHHhchhhcChhHHHHHHHHHHHHHc
Confidence 45667788887777 6899999999999987654
No 305
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.75 E-value=1.7e+02 Score=25.85 Aligned_cols=49 Identities=8% Similarity=-0.022 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCCCch-------HHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q psy16706 35 LSQLKILIRAFYSSPPIH-------GARIVQEILGDPKLKSQWLTEVKGMADRIIS 83 (142)
Q Consensus 35 ~sql~~~~R~~~S~pp~~-------Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~ 83 (142)
...+...++..||+|-.. |+.-+-.+-.+..--.+|.+||..+..-+.+
T Consensus 250 ~~~~~~~~~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~ 305 (445)
T PRK13428 250 LEVLRTAVSQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDA 305 (445)
T ss_pred HHHHHHHHhCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 345677889999999444 4444444555556668899999998776653
No 306
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=22.52 E-value=4.8e+02 Score=22.12 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=15.6
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARI 34 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v 34 (142)
||.||. .|++.|..+ ++.+++..+++
T Consensus 206 sK~l~g------~~~~~gG~v-v~~~~~l~~~~ 231 (388)
T PRK07811 206 TKYIGG------HSDVVGGAL-VTNDEELDEAF 231 (388)
T ss_pred ceeecC------CCCcEEEEE-EECCHHHHHHH
Confidence 688888 787665443 35555554444
No 307
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.45 E-value=2.4e+02 Score=22.61 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=31.4
Q ss_pred HHHHhC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16706 57 VQEILG--DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKE 95 (142)
Q Consensus 57 v~~IL~--dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~ 95 (142)
++.-|. ||+-++.+.+..+.+.++|....+.+-+.+...
T Consensus 128 I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~ 168 (266)
T cd01018 128 IYEALAELDPQNATYYQANLDALLAELDALDSEIRTILSKL 168 (266)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444 899999999999999999999888888777653
No 308
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=22.45 E-value=3.8e+02 Score=23.41 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=17.6
Q ss_pred cccceeecCCC---------HHHHHHHhhhccceeeeCCC
Q psy16706 107 QIGMFCYTGLN---------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 107 q~GmF~~~gl~---------~~qv~~~L~~~~~Iyl~~~G 137 (142)
..|++.-+.+. ..++.++| .+.+|++...|
T Consensus 376 g~Gl~~~v~~~~~~~~~~~~~~~~~~~~-~~~Gv~~~~~~ 414 (445)
T PRK09221 376 NIGLVAGIELAPRPGAPGARGYEAFMKC-FEKGLLVRYTG 414 (445)
T ss_pred cCceEEEEEEecccccccchHHHHHHHH-HHCCeEEeecC
Confidence 45666555442 23566656 46789886554
No 309
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=22.29 E-value=3.7e+02 Score=22.96 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=18.1
Q ss_pred cccceeecCCC-------HHHHHHHhhhccceeeeCCC
Q psy16706 107 QIGMFCYTGLN-------ATQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 107 q~GmF~~~gl~-------~~qv~~~L~~~~~Iyl~~~G 137 (142)
..|++..+-+. ...+...| .+++|++.+.|
T Consensus 357 g~Gl~~~i~l~~~~~~~~~~~l~~~l-~~~Gv~v~~~~ 393 (423)
T PRK05964 357 VLGAIGAVELDRPVLERDGPALRAFA-LERGVLLRPLG 393 (423)
T ss_pred cccEEEEEEeccCcchhHHHHHHHHH-HHCCeEEEecC
Confidence 45666544332 34566656 57899987654
No 310
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.27 E-value=1.1e+02 Score=24.61 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy16706 64 PKLKSQWLTEVKGMADR 80 (142)
Q Consensus 64 p~L~~~W~~El~~m~~r 80 (142)
..|..+|.+||+.+.+.
T Consensus 95 ~ALF~EWe~EL~~Y~~~ 111 (201)
T PF11172_consen 95 DALFDEWEQELDQYSNA 111 (201)
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 47888898888877653
No 311
>PHA00442 host recBCD nuclease inhibitor
Probab=22.23 E-value=1.7e+02 Score=18.98 Aligned_cols=37 Identities=19% Similarity=0.527 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q psy16706 67 KSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITD 106 (142)
Q Consensus 67 ~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~ 106 (142)
|..|. .++.+-+.+.+ +..+.++|+.+|-+ +|+-|..
T Consensus 12 Rd~wn-d~q~yidsLek-~~~~L~~Lea~GVD-NW~Gy~e 48 (59)
T PHA00442 12 RDAWN-DMQGYIDSLEK-DNEFLKALRACGVD-NWDGYMD 48 (59)
T ss_pred HHHHH-HHHHHHHHHHH-hhHHHHHHHHcCCc-chhhHHH
Confidence 44553 34555556554 88888999999976 4887654
No 312
>KOG1403|consensus
Probab=22.20 E-value=5.4e+02 Score=22.72 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=52.3
Q ss_pred EEEeCCHHHHHHHHH-HHHHHHHhhcCCCCch-HHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16706 22 SIVSADKDEAARILS-QLKILIRAFYSSPPIH-GAR-IVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSN 98 (142)
Q Consensus 22 ~vv~~~~~~~~~v~s-ql~~~~R~~~S~pp~~-Ga~-iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~ 98 (142)
.+|...++.++++.+ -+.+.+ +|.--|.. ... -|-.|+.|++|. +.-++|-+.|-..|++++.
T Consensus 288 a~VattkeIA~Af~atgv~YFN--TyGGnPVsCAv~laVm~v~e~E~Lq-----------~ha~~vG~~L~~lL~~~k~- 353 (452)
T KOG1403|consen 288 AAVATTKEIAQAFHATGVEYFN--TYGGNPVSCAVGLAVMRVCEDENLQ-----------EHAQQVGEKLEVLLRRLKQ- 353 (452)
T ss_pred eEEeccHHHHHHhccccceehh--ccCCCchhHHHHHHHHHHHhhhhHH-----------HHHHHHHHHHHHHHHHHhh-
Confidence 356678888888776 233332 35444433 222 234555555543 2233334444444433332
Q ss_pred CCCccccc--cccceeecCC-------CH-----HHHHHHhhhccceeeeCCC
Q psy16706 99 KPWNHITD--QIGMFCYTGL-------NA-----TQVRRKLIHDRSLKLSNVE 137 (142)
Q Consensus 99 ~~w~~i~~--q~GmF~~~gl-------~~-----~qv~~~L~~~~~Iyl~~~G 137 (142)
....|-+ ..|+|+=+-| +| .-+-.||++.|.|-+..+|
T Consensus 354 -kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG 405 (452)
T KOG1403|consen 354 -KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG 405 (452)
T ss_pred -hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC
Confidence 1344544 4566655433 11 1234459999999999887
No 313
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=22.20 E-value=1.3e+02 Score=26.85 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=54.6
Q ss_pred ccceeEEEeCCHHHHHHHHHHHHHHHHh-hcCCCCchHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16706 17 RVGAFSIVSADKDEAARILSQLKILIRA-FYSSPPIHGARIVQEILGD-PKLKSQWLTEVKGMADRIISMRQSLKDNLQK 94 (142)
Q Consensus 17 RvGal~vv~~~~~~~~~v~sql~~~~R~-~~S~pp~~Ga~iv~~IL~d-p~L~~~W~~El~~m~~ri~~~R~~L~~~l~~ 94 (142)
-.||=.++.+|++...+....-....++ ...+....|++-...++.- -.++....+...+|.++..+....|.++|++
T Consensus 281 P~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~ 360 (460)
T COG0076 281 PIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEK 360 (460)
T ss_pred CCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777889997766655544444443 2222222222222222221 3466777889999999999999999999988
Q ss_pred cCCCCCCcccccc
Q psy16706 95 EGSNKPWNHITDQ 107 (142)
Q Consensus 95 ~~~~~~w~~i~~q 107 (142)
.+ .|+-+...
T Consensus 361 ~~---~~e~~~~p 370 (460)
T COG0076 361 LG---DFELVNEP 370 (460)
T ss_pred CC---CcEeecCC
Confidence 75 35555533
No 314
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=22.18 E-value=2.5e+02 Score=25.10 Aligned_cols=65 Identities=9% Similarity=0.174 Sum_probs=45.7
Q ss_pred cccccceeEEEeCCHHH-HHHHHHHHHHH-HHhhcCCCCchHHHHHHHHhCChhhHH-----HHHHHHHHHHHHHHH
Q psy16706 14 VGERVGAFSIVSADKDE-AARILSQLKIL-IRAFYSSPPIHGARIVQEILGDPKLKS-----QWLTEVKGMADRIIS 83 (142)
Q Consensus 14 YgeRvGal~vv~~~~~~-~~~v~sql~~~-~R~~~S~pp~~Ga~iv~~IL~dp~L~~-----~W~~El~~m~~ri~~ 83 (142)
|..++|.+++-..|.+. .+++...|..+ +++ ..........||.+|++++ .|.++...+.+++++
T Consensus 381 ~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g-----~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 452 (499)
T PRK08654 381 YDSMISKLIVWGRTREEAIARMRRALYEYVIVG-----VKTNIPFHKAVMENENFVRGNLHTHFIEEETTILEEMKR 452 (499)
T ss_pred cCchhheeeEeCCCHHHHHHHHHHHHhhcEEEC-----ccCCHHHHHHHhCCHhhcCCCccchhhhcCHHHHHHHHH
Confidence 77789999999988765 44455555544 455 3344567788999998864 899888677776653
No 315
>PF15200 KRTDAP: Keratinocyte differentiation-associated
Probab=22.05 E-value=70 Score=21.85 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCCCccccccccceeecC
Q psy16706 85 RQSLKDNLQKEGSNKPWNHITDQIGMFCYTG 115 (142)
Q Consensus 85 R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~g 115 (142)
..+|++.+++.-.--+|+..|+-+||=|.+|
T Consensus 44 WHalfe~iK~kLPFlNWdafPKlKGlRSa~P 74 (77)
T PF15200_consen 44 WHALFEAIKRKLPFLNWDAFPKLKGLRSATP 74 (77)
T ss_pred HHHHHHHHHHhCcccchhhhhhhccccccCC
Confidence 4567777766555568999999999988765
No 316
>PRK11627 hypothetical protein; Provisional
Probab=22.00 E-value=1.3e+02 Score=23.74 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCcccccccCCCCcccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHH
Q psy16706 1 QKKNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKS 68 (142)
Q Consensus 1 ~SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~ 68 (142)
++|+|+- -+.+-|++. +|.+..+.+.+++- ..++..|++||+|..
T Consensus 141 ~tK~Y~~------~~~~~g~~s---a~~~~ie~~lN~~l--------------s~vl~~i~~D~el~~ 185 (192)
T PRK11627 141 QTKNYRA------SYNVQGAFQ---ASNKKIADAVNSVL--------------SDVIADMAQDTSISE 185 (192)
T ss_pred EEEEEee------eeeeecCCC---CCHHHHHHHHHHHH--------------HHHHHHHHcCHHHHH
Confidence 4677777 666777654 56666655555433 457889999999865
No 317
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.98 E-value=1e+02 Score=29.12 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc-ccceeecCCCHHHHHH
Q psy16706 68 SQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQ-IGMFCYTGLNATQVRR 123 (142)
Q Consensus 68 ~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q-~GmF~~~gl~~~qv~~ 123 (142)
++|.+||+.|.+.++.++..+-+.-.+.... ..++..| +-.+....|++.|.+.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q--~~~i~~~~~~~~~s~~L~~~Q~~~ 689 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDYQ--QRQIESQKSPKKKSIVLSESQKRT 689 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccccCCCccCCHHHHHH
Confidence 6899999999999988887766422221111 1233333 3466667788877765
No 318
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=21.73 E-value=3.9e+02 Score=22.87 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=17.5
Q ss_pred CcccccccCCCCcccccceeEEEeCCHHHHHHHH
Q psy16706 2 KKNYGIHFTCLPVGERVGAFSIVSADKDEAARIL 35 (142)
Q Consensus 2 SKnfgL~~~~~~YgeRvGal~vv~~~~~~~~~v~ 35 (142)
||.||- .|+++|.+.+ .+++.++++.
T Consensus 209 sK~l~g------~~~~~gG~vv--~~~~l~~~l~ 234 (398)
T PRK08249 209 TKFLSG------HADALGGVVC--GSKELMEQVY 234 (398)
T ss_pred ceecCC------CCCceEEEEE--CCHHHHHHHH
Confidence 688888 8888876644 3555555544
No 319
>PRK11020 hypothetical protein; Provisional
Probab=21.66 E-value=2e+02 Score=21.26 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH-hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16706 28 KDEAARILSQLKILIRAFYSSPPIHGARIVQEI-LGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEG 96 (142)
Q Consensus 28 ~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~I-L~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~ 96 (142)
+.++..+.+.|..+-|-. .+.+ -.|+++..+..+|++.+..+|.+++..=-..|.+.+
T Consensus 4 K~Eiq~L~drLD~~~~Kl-----------aaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~ 62 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKL-----------AAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEA 62 (118)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666676666632 2222 348999999999999999999998876555555443
No 320
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=21.59 E-value=2e+02 Score=17.37 Aligned_cols=20 Identities=0% Similarity=0.313 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16706 74 VKGMADRIISMRQSLKDNLQ 93 (142)
Q Consensus 74 l~~m~~ri~~~R~~L~~~l~ 93 (142)
|++|+.-|++|+..++++++
T Consensus 13 L~EvrkEl~K~K~EIIeA~~ 32 (40)
T PF08776_consen 13 LEEVRKELQKVKEEIIEAIR 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888777764
No 321
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.52 E-value=2.7e+02 Score=21.41 Aligned_cols=33 Identities=6% Similarity=0.233 Sum_probs=27.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16706 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKE 95 (142)
Q Consensus 63 dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~ 95 (142)
||+-++.+.+..+.+.++|....+.+.+.+...
T Consensus 132 dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~~~ 164 (203)
T cd01145 132 DPSEQEEYKENLRVFLAKLNKLLREWERQFEGL 164 (203)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999998888777766543
No 322
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.39 E-value=2e+02 Score=23.60 Aligned_cols=49 Identities=8% Similarity=0.191 Sum_probs=36.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCccccccccce
Q psy16706 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGS--------NKPWNHITDQIGMF 111 (142)
Q Consensus 63 dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~--------~~~w~~i~~q~GmF 111 (142)
||+-+..+.+..+.+.++|..+.+.+.+.+..... -..|.|+.+.-|+=
T Consensus 141 dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~ 197 (287)
T cd01137 141 DPANAETYQKNAAAYKAKLKALDEWAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLK 197 (287)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCEEEEecccHHHHHHHcCCe
Confidence 89999999999999999999988888777765421 12466666655554
No 323
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.34 E-value=1.1e+02 Score=22.75 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy16706 64 PKLKSQWLTEVKGMADRIISM 84 (142)
Q Consensus 64 p~L~~~W~~El~~m~~ri~~~ 84 (142)
.--+.+|.-|..+|..||...
T Consensus 17 ErdR~~WeiERaEmkarIa~L 37 (134)
T PF08232_consen 17 ERDRNQWEIERAEMKARIAFL 37 (134)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 345789999999999888653
No 324
>PRK08462 biotin carboxylase; Validated
Probab=21.28 E-value=1.8e+02 Score=24.97 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=34.8
Q ss_pred cccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHH
Q psy16706 14 VGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKS 68 (142)
Q Consensus 14 YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~ 68 (142)
|..|+|.+++...|.+++........ +..-=.++..--..+..||.+|++++
T Consensus 382 ~~~~lg~vi~~g~~~~ea~~~~~~al---~~~~i~g~~~~~~~~~~~~~~~~~~~ 433 (445)
T PRK08462 382 YDSMIGKLIVWGEDRNRAIAKMKRAL---KEFKVEGIKTTIPFHLEMMENADFIN 433 (445)
T ss_pred hccCccEEEEEcCCHHHHHHHHHHHH---HhcEEECccCCHHHHHHHhcChhhcC
Confidence 77899999999998877544332222 22222234456778899999999854
No 325
>PRK14973 DNA topoisomerase I; Provisional
Probab=21.11 E-value=1e+02 Score=30.15 Aligned_cols=34 Identities=12% Similarity=0.427 Sum_probs=26.4
Q ss_pred CCCCchHHHHHHHH------hCChhhHHHHHHHHHHHHHH
Q psy16706 47 SSPPIHGARIVQEI------LGDPKLKSQWLTEVKGMADR 80 (142)
Q Consensus 47 S~pp~~Ga~iv~~I------L~dp~L~~~W~~El~~m~~r 80 (142)
-.|..-|..++..+ |.||++.++|+++|+.+.+-
T Consensus 506 l~pT~~G~~li~~L~~~~~~l~~p~lTA~~E~~Ld~I~~G 545 (936)
T PRK14973 506 LRPTLVGRAVTESLEEHAGTITEPDMTQTLEEHMQQIKER 545 (936)
T ss_pred eeEcHHHHHHHHHHHHhchhhcCHHHHHHHHHHHHHHHcC
Confidence 44666777777666 67999999999999887653
No 326
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=20.86 E-value=1.1e+02 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16706 71 LTEVKGMADRIISMRQSL 88 (142)
Q Consensus 71 ~~El~~m~~ri~~~R~~L 88 (142)
.+|++.+.++++..|..+
T Consensus 6 ~~ele~~~~~lk~~R~~l 23 (75)
T smart00352 6 PRELEAFAKTFKQRRIKL 23 (75)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 468999999999988654
No 327
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=20.82 E-value=4e+02 Score=20.57 Aligned_cols=83 Identities=12% Similarity=0.262 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc-ccccee
Q psy16706 34 ILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITD-QIGMFC 112 (142)
Q Consensus 34 v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~-q~GmF~ 112 (142)
|++-+..++| ++..+..|+..++.+-.+..+=..+.-.+ ..+.+|+.|. .|.+.|.-. ...... ..|.+.
T Consensus 10 v~~~l~~~~~-----~~~~~~~Vl~~L~~~g~~tdeeLA~~Lgi--~~~~VRk~L~-~L~e~gLv~-~~r~r~~~~Gr~~ 80 (178)
T PRK06266 10 VQKVLFEIME-----GDEEGFEVLKALIKKGEVTDEEIAEQTGI--KLNTVRKILY-KLYDARLAD-YKREKDEETNWYT 80 (178)
T ss_pred HHHHHHHHhc-----CCccHhHHHHHHHHcCCcCHHHHHHHHCC--CHHHHHHHHH-HHHHCCCeE-EeeeeccCCCcEE
Confidence 4555566666 46677888888877656665544444443 4466788877 455555321 222223 466666
Q ss_pred ec-CCCHHHHHHHh
Q psy16706 113 YT-GLNATQVRRKL 125 (142)
Q Consensus 113 ~~-gl~~~qv~~~L 125 (142)
|. -++++++...+
T Consensus 81 y~w~l~~~~i~d~i 94 (178)
T PRK06266 81 YTWKPELEKLPEII 94 (178)
T ss_pred EEEEeCHHHHHHHH
Confidence 64 46666665534
No 328
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=20.76 E-value=3.5e+02 Score=20.07 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=42.8
Q ss_pred HHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC-CHH
Q psy16706 41 LIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL-NAT 119 (142)
Q Consensus 41 ~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~~w~~i~~q~GmF~~~gl-~~~ 119 (142)
+-+..|+..|...-.|+..|..+++.. ..-+++.-.|+ -+.| |---..+.+-|.|.|| +.+
T Consensus 11 VM~ilW~~~~~t~~eI~~~l~~~~ews---~sTV~TLl~RL-----------~KKg----~l~~~kdgr~~~y~pL~~~~ 72 (123)
T COG3682 11 VMEILWSRGPATVREIIEELPADREWS---YSTVKTLLNRL-----------VKKG----LLTRKKDGRAFRYSPLLTRD 72 (123)
T ss_pred HHHHHHHcCCccHHHHHHHHhhccccc---HHHHHHHHHHH-----------Hhcc----chhhhhcCCeeeeecccCHH
Confidence 347789999999999999999985432 12333333333 2223 4445567788888888 777
Q ss_pred HHHH
Q psy16706 120 QVRR 123 (142)
Q Consensus 120 qv~~ 123 (142)
|...
T Consensus 73 ~~~~ 76 (123)
T COG3682 73 QYVA 76 (123)
T ss_pred HHHH
Confidence 6655
No 329
>KOG0568|consensus
Probab=20.67 E-value=1.3e+02 Score=25.36 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=38.0
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16706 55 RIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGS 97 (142)
Q Consensus 55 ~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~ 97 (142)
.-+..||-|..+..+|.---+.+++-|.+.|+++..+-+++|.
T Consensus 243 h~lnkilidngfqpewi~~~kdi~dai~qlkeai~~~rk~~g~ 285 (342)
T KOG0568|consen 243 HKLNKILIDNGFQPEWILKGKDIRDAIAQLKEAILQERKKLGE 285 (342)
T ss_pred hhhhhhhhcCCCChHHHhccchHHHHHHHHHHHHHHHHHHhCC
Confidence 4577899999999999999999999999999999977777774
No 330
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=20.62 E-value=3.6e+02 Score=19.95 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHH--HH-------hhc-CCCCchHHHHHHHHhCChhhHHHHHHHHH
Q psy16706 27 DKDEAARILSQLKIL--IR-------AFY-SSPPIHGARIVQEILGDPKLKSQWLTEVK 75 (142)
Q Consensus 27 ~~~~~~~v~sql~~~--~R-------~~~-S~pp~~Ga~iv~~IL~dp~L~~~W~~El~ 75 (142)
+...+..++.+|+.| .| +.= .++|..|+.+|...|.+ .-.|..++.
T Consensus 39 ~~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~gQ~~l~~LLd~---C~~li~dl~ 94 (134)
T PF10303_consen 39 SSSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPGGQAVLNGLLDD---CFDLIEDLL 94 (134)
T ss_pred cHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcchHHHHHHHHHH---HHHHHHHHH
Confidence 467788899999987 45 223 45677889999999985 445666653
No 331
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=20.60 E-value=4.6e+02 Score=22.08 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHhhc--CCCCchHHHHHHHHhC--ChhhHHHHHHHHHH
Q psy16706 27 DKDEAARILSQLKILIRAFY--SSPPIHGARIVQEILG--DPKLKSQWLTEVKG 76 (142)
Q Consensus 27 ~~~~~~~v~sql~~~~R~~~--S~pp~~Ga~iv~~IL~--dp~L~~~W~~El~~ 76 (142)
+++.+..+...|....-... +..+..|...|+.||+ +++..+.-.+.|+.
T Consensus 175 ~~~~~~~i~~~L~~~l~~~~~~~~~~~~g~~~~a~Iln~~~~~~~~~il~~L~~ 228 (339)
T PRK05686 175 SPEALKEVEEVLEKKLSSMANADRTKMGGVKTVAEILNNLDRQTEKTILESLEE 228 (339)
T ss_pred CHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 34566666665555444322 3456789999999999 45545455555554
No 332
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=20.55 E-value=2e+02 Score=24.77 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=35.6
Q ss_pred cccccceeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHH
Q psy16706 14 VGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKS 68 (142)
Q Consensus 14 YgeRvGal~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~ 68 (142)
|..|+|.+++...|.+.+.....+...-+ -=..+......+..||.+|++..
T Consensus 382 ~~~~lg~vi~~g~~~~~~~~~~~~~l~~~---~i~g~~tn~~~~~~~~~~~~f~~ 433 (451)
T PRK08591 382 YDSMIGKLIVHGETREEAIARMKRALSEF---VIDGIKTTIPLHLRLLNDPNFQA 433 (451)
T ss_pred ccCcceEEEEEcCCHHHHHHHHHHHHhhC---EEECCCCCHHHHHHHhcCHhhhC
Confidence 66799999999999877654333322222 22225577888999999999853
No 333
>PF05144 Phage_CRI: Phage replication protein CRI ; InterPro: IPR022686 The sequences matched by this entry represent a family of phage and plasmid replication proteins. In bacteriophage IKe and related phage, the full-length protein is designated gene II protein. A much shorter protein of unknown function, translated from a conserved in-frame alternative initiator, is designated gene X protein. Members of this family also include plasmid replication proteins. ; GO: 0006260 DNA replication
Probab=20.20 E-value=2.1e+02 Score=23.88 Aligned_cols=78 Identities=24% Similarity=0.248 Sum_probs=41.5
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy16706 20 AFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNK 99 (142)
Q Consensus 20 al~vv~~~~~~~~~v~sql~~~~R~~~S~pp~~Ga~iv~~IL~dp~L~~~W~~El~~m~~ri~~~R~~L~~~l~~~~~~~ 99 (142)
.+-+-++- ++++.|++.+ |...+........=+...+++|+|.+ |.+.+--.-.+|++ ..|++.+.|-
T Consensus 189 ~~K~Y~K~----~E~~~~~~~l-~~~~~k~~~~~~~~~~~~l~~~~L~~-~A~~~LR~E~~l~~------~~L~~~~ip~ 256 (271)
T PF05144_consen 189 TLKFYSKG----DEFQHQLKKL-KKKARKGDSSSFHRVIDELSDPKLQE-WADNLLRFELRLKS------RYLQKHNIPL 256 (271)
T ss_pred EEEEEECH----HHHHHHHHHH-HHhhhccccHHhhhhHHHhccHhHHH-HHHhhhhhhhhHHH------HHHHHcCCch
Confidence 44555554 4455666663 33345555444455668888888754 65443222222222 4677777553
Q ss_pred -CCcccccccc
Q psy16706 100 -PWNHITDQIG 109 (142)
Q Consensus 100 -~w~~i~~q~G 109 (142)
=|+.|.+|+.
T Consensus 257 ~l~~~i~~~~~ 267 (271)
T PF05144_consen 257 NLFDLIKYQSN 267 (271)
T ss_pred HHHHHHHHHHh
Confidence 2555555543
Done!