RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16706
(142 letters)
>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase.
Length = 423
Score = 199 bits (507), Expect = 2e-63
Identities = 71/121 (58%), Positives = 84/121 (69%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN G++ GERVGA S+V D A R+ SQLK++ R YS+PPIHGA IV ILG
Sbjct: 269 KNMGLY------GERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILG 322
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
DP+L S+W E+KGMADRIISMRQ L D L+ GS W+HIT QIGMF +TGLN QV
Sbjct: 323 DPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNKEQVD 382
Query: 123 R 123
R
Sbjct: 383 R 383
>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional.
Length = 404
Score = 177 bits (451), Expect = 3e-55
Identities = 67/121 (55%), Positives = 86/121 (71%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN G++ GER+GA IV A+K+EAA +LSQLK++IR YSSPPIHGARI IL
Sbjct: 251 KNMGLY------GERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILS 304
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
DP+L+++WL+E+K M+ RI +MRQ L D L+ GS W HI +QIGMF +TGL QV
Sbjct: 305 DPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTKEQVE 364
Query: 123 R 123
R
Sbjct: 365 R 365
>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase;
Provisional.
Length = 396
Score = 171 bits (437), Expect = 3e-53
Identities = 58/121 (47%), Positives = 82/121 (67%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN+G++ GERVGA S+V+ D +EA R+LSQLK IR YS+PP HGA IV IL
Sbjct: 246 KNFGLY------GERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILN 299
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
DP+L+++W E++ M +RI +MRQ L + L+ +G ++ ++ I Q GMF Y+GL QV
Sbjct: 300 DPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTPEQVD 359
Query: 123 R 123
R
Sbjct: 360 R 360
>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism].
Length = 396
Score = 163 bits (416), Expect = 4e-50
Identities = 58/121 (47%), Positives = 83/121 (68%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN+G++ GERVGA S+V+ D +EA R+LSQLK +IR YS+PP HGA +V IL
Sbjct: 246 KNFGLY------GERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILN 299
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
+P+L+++W E++ M RI+ MRQ+L D L+ G+ + ++ I Q GMF YTGL+ QV
Sbjct: 300 NPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVD 359
Query: 123 R 123
R
Sbjct: 360 R 360
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 88.5 bits (220), Expect = 9e-22
Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 25/127 (19%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
K +G+ G RVG A ++SQL+ L R FYSS H L
Sbjct: 215 KAFGL------AGWRVGYILGN-------AAVISQLRKLARPFYSS--THLQAAAAAALS 259
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN---AT 119
DP L + L E M RI R L+D L+ G + + Q G F TGL+ A
Sbjct: 260 DPLLVASELEE---MRQRIKERRDYLRDGLEAAG----LSVLPSQAGFFLLTGLDPEAAL 312
Query: 120 QVRRKLI 126
+ + L+
Sbjct: 313 ALAQVLL 319
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 51.6 bits (124), Expect = 1e-08
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 21/116 (18%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
K +G LP G R+G I + +L +LK L+ S P L
Sbjct: 204 KTFG-----LP-GLRIGYL-IAPPE-----ELLERLKKLLPYTTSGPSTLSQAAAAAALD 251
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNA 118
D + ++ + +R R +L + L++ G P + G F + L
Sbjct: 252 DGE------EHLEELRERYRRRRDALLEALKELG---PLVVVKPSGGFFLWLDLPE 298
>gnl|CDD|219573 pfam07781, Reovirus_Mu2, Reovirus minor core protein Mu-2. This
family represents the Reovirus core protein Mu-2. Mu-2
is a microtubule associated protein and is thought to
play a key role in the formation and structural
organisation of reovirus inclusion bodies.
Length = 735
Score = 31.0 bits (70), Expect = 0.22
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 7 IHFTCLP--VGERVGAFSIVSADKD-------EAARILSQLKILIRAFYSSPPIHGARIV 57
T P + V A +D + ++ ++A Y S P+ +
Sbjct: 194 FCVTIFPSLSTPKCFVLDAVDAWRDPSVPLSVKWIQLAYDRVYAVKARYLSDPL----AL 249
Query: 58 QEILGDPKLKSQWLTEVKGMADRIISMR 85
L DP LK W T A R+ +R
Sbjct: 250 LRRLVDPSLKPLWSTPSDARAARLSGLR 277
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 28.3 bits (64), Expect = 1.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 71 LTEVKGMADRIISMRQ 86
L EV G+ADRI+ MR+
Sbjct: 456 LPEVLGVADRIVVMRE 471
>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism].
Length = 451
Score = 27.6 bits (62), Expect = 2.1
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 8 HFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRA 44
LP ERV + ++ K++AA +L +L +R
Sbjct: 39 ILEELPGRERVVVWRLL--PKEDAAEVLGELDDEVRE 73
>gnl|CDD|232867 TIGR00194, uvrC, excinuclease ABC, C subunit. This family consists
of the DNA repair enzyme UvrC, an ABC excinuclease
subunit which interacts with the UvrA/UvrB complex to
excise UV-damaged nucleotide segments [DNA metabolism,
DNA replication, recombination, and repair].
Length = 574
Score = 27.7 bits (62), Expect = 2.3
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 14 VGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTE 73
+G FS+ D DE + + L + Y + I +V L D KL L+E
Sbjct: 267 IGRDQFDFSLPGTDLDEL--VETFLIQFYQQGYQNRLIPSEILVSLSLEDLKLLEDLLSE 324
Query: 74 VKG 76
+G
Sbjct: 325 QRG 327
>gnl|CDD|235147 PRK03643, PRK03643, altronate oxidoreductase; Provisional.
Length = 471
Score = 27.5 bits (62), Expect = 2.7
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEV 74
GER G + D QL + S A +V +L D K Q LT+V
Sbjct: 401 GERNGE-TYPIQDDAHWLERFKQLWSQVDDGEISL----AELVAAVLSDEKHWGQDLTQV 455
Query: 75 KGMADRIISMRQSL 88
G+ +++ Q++
Sbjct: 456 PGLVEQVTEYLQAI 469
>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional.
Length = 352
Score = 27.2 bits (61), Expect = 2.7
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 17/56 (30%)
Query: 9 FTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDP 64
F LP+GER F A A +++R F G R+ +G P
Sbjct: 297 FVWLPLGERTADF----AAAAAEAG------VVVRPF----AGEGVRVT---IGAP 335
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 27.1 bits (61), Expect = 3.5
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 23/92 (25%)
Query: 18 VGAFSIVSADKDEAARILS---QLKILI-RAFYSSPPI-----------HGA-----RIV 57
+ I + ++ LS Q K+++ R + P + GA R++
Sbjct: 385 IRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444
Query: 58 QEILGDPK---LKSQWLTEVKGMADRIISMRQ 86
+E+ + K + S L E+ G++DRI+ MR+
Sbjct: 445 RELAAEGKAILMISSELPELLGLSDRILVMRE 476
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 27.0 bits (60), Expect = 3.7
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 1 QKKNYGIHFTCLPVGERVGAF 21
QK YG+ ++CLPV G+F
Sbjct: 278 QKMGYGLEYSCLPVA---GSF 295
>gnl|CDD|185583 PTZ00375, PTZ00375, dihydroxyacetone kinase-like protein;
Provisional.
Length = 584
Score = 27.1 bits (60), Expect = 3.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 51 IHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSL 88
I G ++ +ILG K LT++K +ADRI S +S+
Sbjct: 151 IAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSI 188
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 26.9 bits (60), Expect = 3.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 66 LKSQWLTEVKGMADRIISMRQ 86
L S + EV GM+DRI+ M +
Sbjct: 450 LVSSEMPEVLGMSDRILVMHE 470
>gnl|CDD|235434 PRK05370, PRK05370, argininosuccinate synthase; Validated.
Length = 447
Score = 26.1 bits (58), Expect = 8.2
Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 9 FTCLPVGERVG-AFS 22
LPVG+RVG AFS
Sbjct: 5 LKHLPVGQRVGIAFS 19
>gnl|CDD|113793 pfam05036, SPOR, Sporulation related domain. This 70 residue
domain is composed of two 35 residue repeats found in
proteins involved in sporulation and cell division such
as FtsN, DedD, and CwlM. This domain is involved in
binding peptidoglycan. Two tandem repeats fold into a
pseudo-2-fold symmetric single-domain structure
containing numerous contacts between the repeats. FtsN
is an essential cell division protein with a simple
bitopic topology, a short N-terminal cytoplasmic
segment fused to a large carboxy periplasmic domain
through a single transmembrane domain. These repeats
lay at the periplasmic C-terminus. FtsN localises to
the septum ring complex.
Length = 75
Score = 24.6 bits (54), Expect = 9.3
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 17 RVGAFSIVSADKDEAARILSQLK 39
RVG F A ++EA L +LK
Sbjct: 47 RVGPF----ASREEARAALKKLK 65
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family is
long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 25.9 bits (57), Expect = 9.5
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 39 KILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNL 92
KI+ + PP + ARI + + DP LK+ + +++ + +R KD+L
Sbjct: 1607 KIMSHLRAALPPSNAARIAELMAQDPALKAL-IKQLQSSPGTLARVRLEPKDSL 1659
>gnl|CDD|151630 pfam11188, DUF2975, Protein of unknown function (DUF2975). This
family of proteins have no known function. Some members
are annotated as membrane proteins however this cannot
be confirmed.
Length = 93
Score = 24.8 bits (55), Expect = 9.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 11 CLPVGERVGAFSIVSAD 27
P G+R+ + S+ SAD
Sbjct: 47 DNPPGQRMLSISLGSAD 63
>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like. The
sequences found in this family are similar to a region
found in the beta-subunit of glucosidase II, which is
also known as protein kinase C substrate 80K-H (PRKCSH).
The enzyme catalyzes the sequential removal of two
alpha-1,3-linked glucose residues in the second step of
N-linked oligosaccharide processing. The beta subunit is
required for the solubility and stability of the
heterodimeric enzyme, and is involved in retaining the
enzyme within the endoplasmic reticulum.
Length = 176
Score = 25.5 bits (56), Expect = 9.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 65 KLKSQWLTEVKGMADRIISMRQSLKDNLQKE 95
K+K L + D + + L+D+L +
Sbjct: 142 KIKEGLLLAAQKKRDELKKRLKELEDSLPAK 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,029,049
Number of extensions: 622332
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 29
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)