RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16706
(142 letters)
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 199 bits (508), Expect = 5e-64
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN+GI+ ER G + AD + L R YS PP HGA+IV +L
Sbjct: 243 KNFGIY------RERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLT 296
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
P+L++ W+ E++ + ++ +R+ L L+ + + + + GMF G QV+
Sbjct: 297 TPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVK 356
Query: 123 R 123
R
Sbjct: 357 R 357
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 198 bits (507), Expect = 8e-64
Identities = 72/121 (59%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN G++ GER GAF+++ D +EA R+ SQLKILIR YS+PP++GARI IL
Sbjct: 250 KNMGLY------GERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILN 303
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
P+L+ +WL EVKGMADRIISMR L NL+KEGS+ W HITDQIGMFC+TGL QV
Sbjct: 304 TPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVE 363
Query: 123 R 123
R
Sbjct: 364 R 364
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 198 bits (506), Expect = 9e-64
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
K + ++ GERVG S++ D + A R+L QLK +R YSSPP GA++V +L
Sbjct: 247 KIFSLY------GERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
D LK+ WL EV+ M RI++MRQ L L E + ++++ +Q GMF YTGL+A QV
Sbjct: 301 DEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVD 360
Query: 123 R 123
R
Sbjct: 361 R 361
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 199 bits (508), Expect = 9e-64
Identities = 55/121 (45%), Positives = 78/121 (64%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
K++ ++ GERVGA SI++ KDEAAR+LSQLK +IR YS+PP HG IV +L
Sbjct: 269 KSFSLY------GERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLA 322
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
P+L++ W+ E+ M DRI +MR L + L+ G + ++ I Q GMF Y+GL + QV
Sbjct: 323 SPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSAQVD 382
Query: 123 R 123
R
Sbjct: 383 R 383
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 198 bits (507), Expect = 1e-63
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN+G++ G R GA I +A +EA R++SQL +LIR Y++PP++GA +V IL
Sbjct: 258 KNFGLY------GHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILK 311
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
DP+L + W E+K M+ RI +R+ L L+ GS W+HI Q+GM YTGL QV
Sbjct: 312 DPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQVE 371
Query: 123 R 123
Sbjct: 372 L 372
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 197 bits (504), Expect = 3e-63
Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 6/121 (4%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN+G++ ERVG ++V+ + D R+LSQ++ ++R +S+PP GARIV L
Sbjct: 258 KNFGLY------NERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLS 311
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
DP+L +W VK MADRI+SMR L+ L+ + WNHITDQIGMF +TGLN QV
Sbjct: 312 DPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVE 371
Query: 123 R 123
Sbjct: 372 Y 372
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 196 bits (500), Expect = 6e-63
Identities = 48/109 (44%), Positives = 68/109 (62%)
Query: 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEV 74
ERVGA ++V+AD + R SQ+K IRA YS+PP HGA +V IL + L++ W E+
Sbjct: 252 NERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQEL 311
Query: 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRR 123
M RI MRQ + LQ++G+N+ ++ I Q GMF ++GL QV R
Sbjct: 312 TDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR 360
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 193 bits (492), Expect = 1e-61
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
KN + GER GA IV +++E + + L ++R FYSSP IH RI+ ++L
Sbjct: 249 KNMSL------YGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLN 302
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQ----KEGSNKPWNHITDQIGMFCYTGLNA 118
+ LK W+ E+ ++ RI + R + L+ K N WN Q G+F + L A
Sbjct: 303 NQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA 362
Query: 119 TQVRR 123
Sbjct: 363 KIAEH 367
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 191 bits (488), Expect = 6e-61
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 10/125 (8%)
Query: 3 KNYGIHFTCLPVGERVGAFSIV----SADKDEAARILSQLKILIRAFYSSPPIHGARIVQ 58
KN G++ GERVG F + + +K + SQL +IR+ S+PP +GA+IV
Sbjct: 254 KNAGMY------GERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVA 307
Query: 59 EILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNA 118
++L P+L QW ++ M+ RI MR +L+D+L K G+ W+HI +Q GMF +TGL
Sbjct: 308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP 367
Query: 119 TQVRR 123
V+R
Sbjct: 368 QMVKR 372
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 182 bits (465), Expect = 2e-57
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
K + ++ G+RVGA +S D++ A K RA +S+ R + I+
Sbjct: 262 KGFTMY------GQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVA 315
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
DP ++ E I K + G + + G F ++
Sbjct: 316 DPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG----LPMLPYRGGFFITIPTDSANAI 371
Query: 123 RKLIHD 128
+ +
Sbjct: 372 CEELKK 377
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 183 bits (467), Expect = 2e-57
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSA--------DKDEAARILSQLKILIRAFYSSPPIHGA 54
KN+G++ GER+G +V A +K +A ++S + + IR +S IHGA
Sbjct: 277 KNFGLY------GERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGA 330
Query: 55 RIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKP-----WNHITDQIG 109
IVQ I+ D +L + VK M+ RI MR L +L K + P W+HI IG
Sbjct: 331 YIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIG 390
Query: 110 MFCYTGLNATQVRR 123
MF +TGL V
Sbjct: 391 MFTFTGLTPEHVDY 404
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 174 bits (443), Expect = 3e-54
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 13/123 (10%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILG 62
K++ + G R GA +S+ K+ + L R +S+ H A+ + L
Sbjct: 261 KSHTAY------GLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGT-HAAQNILIELE 313
Query: 63 DPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNAT--Q 120
+ K + E+ + + + S ++ I G F + +
Sbjct: 314 RAENKKIYEQELVDLRNMLKSRADVFVTAAKENK----LTMIPYFGGFFTFIPTDKAFDI 369
Query: 121 VRR 123
V+
Sbjct: 370 VKD 372
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 138 bits (349), Expect = 3e-40
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 3 KNYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEIL- 61
K + G RVG + ++D+ + +++K LIR+ SS P+ V+ +L
Sbjct: 271 KEFF--AW----GFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLK 324
Query: 62 GDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGL---NA 118
+ + + ++ + +R ++ + + W G F + +
Sbjct: 325 NNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH----WQAYDFNSGYFMAIKVHDVDP 380
Query: 119 TQVRRKLIHD 128
+R+ LI
Sbjct: 381 EALRKHLIDK 390
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.35
Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 63/163 (38%)
Query: 1 QKKNYGIHFTCLPVGERVGAF------------SIVSA-------DKDEAARILSQ-LKI 40
Q +Y + T +G G +V+A + + + + +
Sbjct: 245 QLAHYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 41 LIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKP 100
L F+ I G R E + L S+ + +N EG P
Sbjct: 303 L---FF----I-GVR-CYEAYPNTSLPP--------------SILEDSLEN--NEGVPSP 337
Query: 101 WNHITDQIGMFCYTGLNATQV-------RRKLIHDRSLKLSNV 136
M + L QV L + +++S V
Sbjct: 338 ---------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Score = 29.2 bits (65), Expect = 0.47
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 19/77 (24%)
Query: 7 IHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKL 66
IH ++ + E L + K LI+ + + ARI+ + D K
Sbjct: 101 IH-------------ALAAKLLQENDTTLVKTKELIKNYIT------ARIMAKRPFDKKS 141
Query: 67 KSQWLTEVKGMADRIIS 83
S V ++++
Sbjct: 142 NSALFRAVGEGNAQLVA 158
Score = 26.9 bits (59), Expect = 3.3
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 15/49 (30%)
Query: 7 IHFTCLPVGERVGAF-SIV-----------SADK---DEAARILSQLKI 40
+ + VG+R G IV + D D +L+ +K+
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex,
response regulator, receiver domain, two-component
signal transduction; HET: BFD; 1.96A {Borrelia
burgdorferi}
Length = 157
Score = 28.7 bits (64), Expect = 0.44
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 52 HGARIVQEILGDPKLKSQWLTEVKGMADRII------SMRQSLKDNLQKEG 96
HG+ I D K + + G+ ++ + L EG
Sbjct: 10 HGSIQKTTIAADSSSKPRGINYDTGIPFNVLIVDDSVFTVKQLTQIFTSEG 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.70
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 27 DKDEAARILSQLKILIRAFY---SSPPI 51
+K ++ + LK+ Y S+P +
Sbjct: 18 EKQALKKLQASLKL-----YADDSAPAL 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.0
Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 14/89 (15%)
Query: 6 GIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPK 65
T + + + DE +L K L P + + +P+
Sbjct: 283 AATTTHISLDHHSMTLT-----PDEVKSLLL--KYLDCRPQDLPR-------EVLTTNPR 328
Query: 66 LKSQWLTEVKGMADRIISMRQSLKDNLQK 94
S ++ + + D L
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTT 357
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
binding fold, structural genomics, PSI; HET: NAD; 1.90A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A*
1m8k_A*
Length = 181
Score = 26.5 bits (58), Expect = 3.3
Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 39 KILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEVKGMA---DRIISMRQSLKDNLQKE 95
+++ S I +R + D + + W+ +K + DR+ S ++ ++
Sbjct: 56 VMMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSED 115
Query: 96 GSNKPWNHITDQIGMFCYTGLNATQVRRKLIHDRSLK 132
G + +F + T+VRR+++ D +
Sbjct: 116 G------YEVTAPPLFYRDRYSGTEVRRRMLDDGDWR 146
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase;
HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB:
3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Length = 306
Score = 26.4 bits (59), Expect = 3.4
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 26 ADKDEAARILSQLK---ILIRAFYSSPPIHGARIVQ 58
A + +QL + ++ P+ GAR+V
Sbjct: 266 TSASSAIDVGAQLSGAGVCRTVRVATGPVPGARVVS 301
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 25.8 bits (57), Expect = 5.5
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 64 PKLKSQW-LTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVR 122
PKL+ QW LT+ K A + I + + L++ P+N F + +
Sbjct: 19 PKLR-QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYN-----TPTFAIKKKDKNK-W 71
Query: 123 RKLIHDRSL 131
R LI R L
Sbjct: 72 RMLIDFREL 80
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
13124, center for structural genomics of infectious DI
csgid; 1.85A {Clostridium perfringens}
Length = 351
Score = 25.8 bits (57), Expect = 5.6
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 21 FSIVSADKDEAARILSQLKILIRAFYSSPP 50
+ + + + A + L LK + YS
Sbjct: 191 VDVKTDNGEAAFKELEALKPNVVKTYSKSS 220
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket,
two component system; 1.90A {Bacillus subtilis} SCOP:
c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A
1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Length = 124
Score = 25.1 bits (56), Expect = 6.1
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 77 MADRII------SMRQSLKDNLQKEG 96
M ++I+ +R L + KEG
Sbjct: 2 MNEKILIVDDQSGIRILLNEVFNKEG 27
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein
structure initiative II (PSI II), structural genomics;
1.95A {Thermotoga maritima}
Length = 142
Score = 24.8 bits (55), Expect = 9.7
Identities = 4/26 (15%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 77 MADRII------SMRQSLKDNLQKEG 96
+ ++ ++K+ L+K+G
Sbjct: 3 LTPTVMVVDESRITFLAVKNALEKDG 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,101,526
Number of extensions: 115462
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 27
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)