RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16706
(142 letters)
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 88.1 bits (217), Expect = 4e-22
Identities = 53/111 (47%), Positives = 72/111 (64%)
Query: 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEV 74
ERVG ++V+ + D R+LSQ++ ++R +S+PP GARIV L DP+L +W V
Sbjct: 264 NERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNV 323
Query: 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKL 125
K MADRI+SMR L+ L+ + WNHITDQIGMF +TGLN QV +
Sbjct: 324 KTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLI 374
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 83.9 bits (206), Expect = 1e-20
Identities = 48/109 (44%), Positives = 68/109 (62%)
Query: 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEV 74
ERVGA ++V+AD + R SQ+K IRA YS+PP HGA +V IL + L++ W E+
Sbjct: 252 NERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQEL 311
Query: 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRR 123
M RI MRQ + LQ++G+N+ ++ I Q GMF ++GL QV R
Sbjct: 312 TDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR 360
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
4932]}
Length = 412
Score = 83.5 bits (205), Expect = 2e-20
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 15 GERVGAFSIVSAD----KDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQW 70
GERVG F + K + SQL +IR+ S+PP +GA+IV ++L P+L QW
Sbjct: 260 GERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW 319
Query: 71 LTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRR 123
++ M+ RI MR +L+D+L K G+ W+HI +Q GMF +TGL V+R
Sbjct: 320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKR 372
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 83.1 bits (204), Expect = 3e-20
Identities = 69/111 (62%), Positives = 83/111 (74%)
Query: 15 GERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDPKLKSQWLTEV 74
GER GAF+++ D +EA R+ SQLKILIR YS+PP++GARI IL P+L+ +WL EV
Sbjct: 256 GERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEV 315
Query: 75 KGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRKL 125
KGMADRIISMR L NL+KEGS+ W HITDQIGMFC+TGL QV R
Sbjct: 316 KGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLT 366
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 82.3 bits (202), Expect = 4e-20
Identities = 51/121 (42%), Positives = 70/121 (57%)
Query: 5 YGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGDP 64
GERVG S++ D + A R+L QLK +R YSSPP GA++V +L D
Sbjct: 243 NSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDE 302
Query: 65 KLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRRK 124
LK+ WL EV+ M RI++MRQ L L E + ++++ +Q GMF YTGL+A QV R
Sbjct: 303 ALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRL 362
Query: 125 L 125
Sbjct: 363 R 363
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 81.2 bits (199), Expect = 1e-19
Identities = 31/120 (25%), Positives = 52/120 (43%)
Query: 4 NYGIHFTCLPVGERVGAFSIVSADKDEAARILSQLKILIRAFYSSPPIHGARIVQEILGD 63
ER G + AD + L R YS PP HGA+IV +L
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT 297
Query: 64 PKLKSQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVRR 123
P+L++ W+ E++ + ++ +R+ L L+ + + + + GMF G QV+R
Sbjct: 298 PELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKR 357
>d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1
[TaxId: 84635]}
Length = 361
Score = 28.4 bits (63), Expect = 0.29
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 25 SADKDEAARILSQLKILIRA-----FYSSPPIHGARIVQEILGDPKLKSQ 69
A AA K +I+ FY R+ + I+ DP +
Sbjct: 310 FAPAPHAAAFKQIAKRVIQEDTFSSFYGDVSTDTIRLAKAIVDDPSIAPA 359
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 24.1 bits (52), Expect = 5.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 3 KNYGIHFTCLPVGERVGAF 21
K++G+ + LP G AF
Sbjct: 89 KDFGVRYFGLPAGHEFAAF 107
>d2foka3 a.4.5.12 (A:287-386) Restriction endonuclease FokI,
N-terminal (recognition) domain {Flavobacterium
okeanokoites [TaxId: 244]}
Length = 100
Score = 23.3 bits (50), Expect = 8.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 88 LKDNLQKEGSNKPWNHITDQIGMFCYTGLN 117
++DNL+K G ++ I + I TG+
Sbjct: 42 IQDNLKKLGFDEVIETIENDIKGLINTGIF 71
>d1regx_ d.58.27.1 (X:) Translational regulator protein regA
{Bacteriophage T4 [TaxId: 10665]}
Length = 122
Score = 23.2 bits (50), Expect = 9.9
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 19 GAFSIVSADKDEAARILSQLKIL 41
G IV + + + +++
Sbjct: 82 GLIEIVPGQRTFMKDLTNNFRVI 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,230
Number of extensions: 21465
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 11
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)