RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16707
(420 letters)
>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase.
Length = 423
Score = 228 bits (584), Expect = 9e-71
Identities = 76/122 (62%), Positives = 95/122 (77%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K++ R YS+PPIHGA IV ILGDP+L ++W E+KGMADRIISMRQ L D L+ GS
Sbjct: 299 KLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSP 358
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
W+HIT QIGMF +TGLN QV+++ KE+ +Y+T+DGRISMAG++SKNV YLA AIHAV
Sbjct: 359 GDWSHITKQIGMFSFTGLNKEQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHAV 418
Query: 419 TK 420
Sbjct: 419 VT 420
Score = 223 bits (571), Expect = 8e-69
Identities = 75/119 (63%), Positives = 94/119 (78%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K++ R YS+PPIHGA IV ILGDP+L ++W E+KGMADRIISMRQ L D L+ GS
Sbjct: 299 KLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSP 358
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
W+HIT QIGMF +TGLN QV+++ KE+ +Y+T+DGRISMAG++SKNV YLA AIHA
Sbjct: 359 GDWSHITKQIGMFSFTGLNKEQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHA 417
Score = 184 bits (470), Expect = 5e-54
Identities = 67/149 (44%), Positives = 93/149 (62%), Gaps = 21/149 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
+TEAF D + K+NLGVGAYR ++GKP VL V++A++ +L + +KEY PI G +F
Sbjct: 38 VTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFN 97
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
KL+A+LAYG D P +K+N +++ VQ +SGTGSLR+GA FL
Sbjct: 98 KLSAKLAYGADSPAIKEN--------------------RVATVQCLSGTGSLRLGAEFLA 137
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
F+PG IY+P PTWGNH I + G+
Sbjct: 138 RFYPG-STIYIPNPTWGNHHNIFRDAGVP 165
>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional.
Length = 404
Score = 204 bits (521), Expect = 1e-61
Identities = 70/122 (57%), Positives = 93/122 (76%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K++IR YSSPPIHGARI IL DP+L+A+WL+E+K M+ RI +MRQ L D L+ GS
Sbjct: 281 KLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSP 340
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
W HI +QIGMF +TGL QVE+LI+++ +YL +GRIS+AG+TSKNV Y+A+AIH V
Sbjct: 341 GDWEHIINQIGMFSFTGLTKEQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDV 400
Query: 419 TK 420
+
Sbjct: 401 VR 402
Score = 199 bits (508), Expect = 1e-59
Identities = 69/119 (57%), Positives = 91/119 (76%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K++IR YSSPPIHGARI IL DP+L+A+WL+E+K M+ RI +MRQ L D L+ GS
Sbjct: 281 KLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSP 340
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
W HI +QIGMF +TGL QVE+LI+++ +YL +GRIS+AG+TSKNV Y+A+AIH
Sbjct: 341 GDWEHIINQIGMFSFTGLTKEQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHD 399
Score = 179 bits (457), Expect = 3e-52
Identities = 66/149 (44%), Positives = 87/149 (58%), Gaps = 20/149 (13%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L AFK D + +K+NLG+GAYRD+ GKPYVL SV++A++I+ KNLDKEY PI G F
Sbjct: 19 LAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFI 78
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+ A +L +GE L + +I+ VQ +SGTG+LR+G FLK
Sbjct: 79 EAAQKLLFGEASYALAEK--------------------RIATVQALSGTGALRLGFEFLK 118
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
F P +YV PTW NH+ I K GL
Sbjct: 119 RFLPAGTTVYVSNPTWPNHVNIFKSAGLN 147
>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase;
Provisional.
Length = 396
Score = 176 bits (450), Expect = 3e-51
Identities = 55/120 (45%), Positives = 80/120 (66%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K IR YS+PP HGA IV IL DP+L+A+W E++ M +RI +MRQ L + L+ +G +
Sbjct: 276 KATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPS 335
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
+ ++ I Q GMF Y+GL QV++L +E VY GRI++AG+ N+ Y+A+AI AV
Sbjct: 336 RDFDFIARQRGMFSYSGLTPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVAEAIAAV 395
Score = 174 bits (443), Expect = 3e-50
Identities = 54/119 (45%), Positives = 79/119 (66%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K IR YS+PP HGA IV IL DP+L+A+W E++ M +RI +MRQ L + L+ +G +
Sbjct: 276 KATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPS 335
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
+ ++ I Q GMF Y+GL QV++L +E VY GRI++AG+ N+ Y+A+AI A
Sbjct: 336 RDFDFIARQRGMFSYSGLTPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVAEAIAA 394
Score = 138 bits (351), Expect = 4e-37
Identities = 58/149 (38%), Positives = 76/149 (51%), Gaps = 21/149 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L EAF+ D +K+NLGVG Y+D+QG+ VL +VK+A+ +L K Y PI G +
Sbjct: 16 LMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYR 75
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+ +L +G D P L RV VQ GTG+LRVGA FLK
Sbjct: 76 QAVQELLFGADSPALAAG--------------RVAT------VQTPGGTGALRVGADFLK 115
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
FP ++V PTW NH I + GLE
Sbjct: 116 RAFPD-AKVWVSDPTWPNHRAIFEAAGLE 143
>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism].
Length = 396
Score = 169 bits (431), Expect = 1e-48
Identities = 56/120 (46%), Positives = 83/120 (69%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K +IR YS+PP HGA +V IL +P+L+A+W E++ M RI+ MRQ+L D L+ G+
Sbjct: 276 KAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAP 335
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
+ ++ I Q GMF YTGL+ QV++L +E +YL GRI++AG+ + N+ Y+AKAI AV
Sbjct: 336 RNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAV 395
Score = 167 bits (426), Expect = 7e-48
Identities = 54/122 (44%), Positives = 82/122 (67%)
Query: 3 FHNAKKILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQ 62
+ K +IR YS+PP HGA +V IL +P+L+A+W E++ M RI+ MRQ+L D L+
Sbjct: 271 VLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALK 330
Query: 63 KEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAK 122
G+ + ++ I Q GMF YTGL+ QV++L +E +YL GRI++AG+ + N+ Y+AK
Sbjct: 331 ALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAK 390
Query: 123 AI 124
AI
Sbjct: 391 AI 392
Score = 152 bits (387), Expect = 3e-42
Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 21/149 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L EAFK D NK+NLG+G Y+D+ GK VL +VK+A++ +L + K Y PI G P+F
Sbjct: 16 LKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFL 75
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+ +L +G D P L ++ +++ VQ + GTG+LRV A FL
Sbjct: 76 EAVQKLLFGADSPALAED--------------------RVATVQTLGGTGALRVAADFLA 115
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
FFP V ++ PTW NH I + GLE
Sbjct: 116 RFFPDATV-WISDPTWPNHKAIFEAAGLE 143
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 95.5 bits (238), Expect = 9e-22
Identities = 41/129 (31%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
+ L R FYSS H L DP L A L E M RI R L+D L+ G
Sbjct: 238 RKLARPFYSS--THLQAAAAAALSDPLLVASELEE---MRQRIKERRDYLRDGLEAAG-- 290
Query: 68 KPWNHITDQIGMFCYTGLNATQVE----KLIKEHSVYLTK--------DGRISMAGVTSK 115
+ + Q G F TGL+ L++E VY+T RI++AG T +
Sbjct: 291 --LSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSSFGGPGWLRITVAGGTEE 348
Query: 116 NVGYLAKAI 124
+ L +AI
Sbjct: 349 ELEELLEAI 357
Score = 95.5 bits (238), Expect = 9e-22
Identities = 41/129 (31%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
+ L R FYSS H L DP L A L E M RI R L+D L+ G
Sbjct: 238 RKLARPFYSS--THLQAAAAAALSDPLLVASELEE---MRQRIKERRDYLRDGLEAAG-- 290
Query: 359 KPWNHITDQIGMFCYTGLNATQVE----KLIKEHSVYLTK--------DGRISMAGVTSK 406
+ + Q G F TGL+ L++E VY+T RI++AG T +
Sbjct: 291 --LSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSSFGGPGWLRITVAGGTEE 348
Query: 407 NVGYLAKAI 415
+ L +AI
Sbjct: 349 ELEELLEAI 357
Score = 78.5 bits (194), Expect = 5e-16
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 27/153 (17%)
Query: 160 VNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFGKLAAQLAYGE 219
+KINLG Y D LP+V +A++ L Y P G P+ + A+
Sbjct: 1 TDKINLGSNEYLGDS---GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLG-- 55
Query: 220 DCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLKNFFPGEKVIY 279
P LK + R A V SG G+ FL PG+ I
Sbjct: 56 RSPVLKLD--------------REAA------VVFGSGAGANIEALIFLLRLNPGD-AIL 94
Query: 280 VPTPTWGNHIPICKHTGLEKILIRAFYSSPPIH 312
VP PT+ ++I I + G E + YSS H
Sbjct: 95 VPAPTYPSYIRIFRLAGGEVVRYP-LYSSNDFH 126
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 54.7 bits (132), Expect = 3e-08
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 24/133 (18%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K L+ S P L D + ++ + +R R +L + L++ G
Sbjct: 228 KKLLPYTTSGPSTLSQAAAAAALDDGE------EHLEELRERYRRRRDALLEALKELG-- 279
Query: 68 KPWNHITDQIGMFCYTGLN----ATQVEKLIKEHSVYLTKDG----------RISMAGVT 113
P + G F + L +E+L+ E V + R+S A
Sbjct: 280 -PLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPE 338
Query: 114 SKNVGYLAKAIHA 126
+ + +
Sbjct: 339 EELE-EALERLAE 350
Score = 54.7 bits (132), Expect = 3e-08
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 24/133 (18%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K L+ S P L D + ++ + +R R +L + L++ G
Sbjct: 228 KKLLPYTTSGPSTLSQAAAAAALDDGE------EHLEELRERYRRRRDALLEALKELG-- 279
Query: 359 KPWNHITDQIGMFCYTGLN----ATQVEKLIKEHSVYLTKDG----------RISMAGVT 404
P + G F + L +E+L+ E V + R+S A
Sbjct: 280 -PLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPE 338
Query: 405 SKNVGYLAKAIHA 417
+ + +
Sbjct: 339 EELE-EALERLAE 350
Score = 50.0 bits (120), Expect = 1e-06
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 30/136 (22%)
Query: 163 INLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFGKLAAQLAYGEDCP 222
I+L +G P V +A + Y P G P+ + A+
Sbjct: 1 IDLSIGEPDFP-----PPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGV 55
Query: 223 QLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLKNFFPGEKVIYVPT 282
+ IV +L + L N PG++V+ VP
Sbjct: 56 DVPPE----------------------EIVVTNGAQEALSLLLRALLN--PGDEVL-VPD 90
Query: 283 PTWGNHIPICKHTGLE 298
PT+ + + G E
Sbjct: 91 PTYPGYEAAARLAGAE 106
>gnl|CDD|224794 COG1882, PflD, Pyruvate-formate lyase [Energy production and
conversion].
Length = 755
Score = 30.8 bits (70), Expect = 1.6
Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 22/108 (20%)
Query: 241 LRVGAAFQIS-----IVQGISGT----GSLRVGAAFLKNFFPGEKVIYVPTPTWGN---- 287
L Q ++ G GSL+ A+ + P + I+ T N
Sbjct: 93 LEPIVGLQTDEELKRALRPFGGPRMAEGSLK---AYGRELDPDIEKIFTKTRITHNQGVF 149
Query: 288 -----HIPICKHTGLEKILIRAFYSSPPIHGARIVQEILGDPKLKAQW 330
HI + + L L A Y I G + G L
Sbjct: 150 DAYTPHIARGRKSLLNTGLPDA-YGRGRIIGDYRRVALYGIDYLMEFK 196
>gnl|CDD|223886 COG0816, COG0816, Predicted endonuclease involved in recombination
(possible Holliday junction resolvase in Mycoplasmas and
B. subtilis) [DNA replication, recombination, and
repair].
Length = 141
Score = 28.7 bits (65), Expect = 2.7
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 85 LNATQVEKLIKEHSVY-------LTKDGRISMAGVTSKNVGYLAKAIHANGSLPIRFQDA 137
+ + KL+KE+ V L DG ++ A+ + +LP+ D
Sbjct: 40 QDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARK---FAERLKKRFNLPVVLWDE 96
Query: 138 RTSSVKV 144
R S+V+
Sbjct: 97 RLSTVEA 103
>gnl|CDD|217659 pfam03652, UPF0081, Uncharacterized protein family (UPF0081).
Length = 134
Score = 28.6 bits (65), Expect = 2.9
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 86 NATQVEKLIKEHSV------Y-LTKDGRISMAGVTSKNVGYLAKAIHANGSLPIRFQDAR 138
+ ++ +LIKE L DG +K V A+ + LP+ D R
Sbjct: 39 DLEELAELIKEWQPDGIVVGLPLNMDGSEGE---MTKRVRKFARRLKKRFGLPVELVDER 95
Query: 139 TSSV 142
++V
Sbjct: 96 LTTV 99
>gnl|CDD|187832 cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
inactivated palm domain and Zn-ribbon; signature gene
for type III.
Length = 909
Score = 29.3 bits (66), Expect = 5.0
Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 39/170 (22%)
Query: 59 DNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTK---DGRISMAGVT-- 113
DNL E N ++D + L+K Y + + R + VT
Sbjct: 145 DNLLSELIELIKNKLSD---------FSQENRSNLLKSLKEYFSHALGETRRPINEVTLW 195
Query: 114 --SKNVGYLAKAIHAN----GSLP-----------IRFQDAR--TSSVKVPS----SNLL 150
S +V L K+ A G +P IRF +K+P LL
Sbjct: 196 DWSYSVASLYKSALAAILLTGQIPDPQDLKWRILSIRFNGLGLLLKGLKIPDILARKELL 255
Query: 151 TEAFKKDTNV--NKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKE 198
E + + LG YRD+ G +V+P +++ + L + E
Sbjct: 256 EEILDRVKKLLEETYPLGNEVYRDENGIYFVVPDLERLLDETLECAVGDE 305
>gnl|CDD|131928 TIGR02882, QoxB, cytochrome aa3 quinol oxidase, subunit I. This
family (QoxB) encodes subunit I of the aa3-type quinone
oxidase, one of several bacterial terminal oxidases.
This complex couples oxidation of reduced quinones with
the reduction of molecular oxygen to water and the
pumping of protons to form a proton gradient utilized
for ATP production. aa3-type oxidases contain two heme a
cofactors as well as copper atoms in the active site
[Energy metabolism, Electron transport].
Length = 643
Score = 28.7 bits (64), Expect = 6.5
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 202 IIGAPDFGKLA-AQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGS 260
I G+PD G A LA E P + N I ISG G+L G F ++I
Sbjct: 155 IGGSPDAGWTNYAPLAGPEFSPGVGVNYYLIALQISGIGTLMTGINFFVTI--------- 205
Query: 261 LRVGAAFLKNFFPGEKVIYVPTPTW 285
LK PG K++ +P TW
Sbjct: 206 -------LKMRAPGMKLMQMPMFTW 223
>gnl|CDD|165523 PHA03265, PHA03265, envelope glycoprotein D; Provisional.
Length = 402
Score = 28.5 bits (63), Expect = 6.9
Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 28/165 (16%)
Query: 124 IHANGSLPIRFQDARTSSVKVPSSNLLT-EAFKKDTNVNKINLGVGAYRDDQGKPYVLPS 182
++ G+LP++F +A+ + VP N ++ + + NK + G +P+ PS
Sbjct: 259 VYDGGNLPVQFYEAQAFARPVPPDNHPGFDSVESEITQNKTDPKPGQADPKPNQPFKWPS 318
Query: 183 VKQ----ADEIVLNKNLDKEYAPIIGAPDFGKLAAQLAYGEDCPQLKDN--LISIVQGIS 236
+K DE+ D P P P K N + I G+
Sbjct: 319 IKHLAPRLDEV------DNVIEPTTKPP---------------PTSKSNSTFVGISVGLG 357
Query: 237 GTGSLRVGAAFQISIVQGISGTGSLRVGAAFLKNFFPGEKVIYVP 281
G + VG + + + S + G L++ F K +P
Sbjct: 358 IAGLVLVGVILYVCLRRKKELKKSAQNGLTRLRSTFKDVKYTQLP 402
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 28.5 bits (64), Expect = 7.0
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 42 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------ATQVEKLIK 95
++ + DR+ S +Q+L G KP + + GL V +
Sbjct: 8 HLEELYDRVGSWKQALDSIPYSIGL-KPLKNFESFDELLSLGGLLNDLLEAMEAVHGQLN 66
Query: 96 EHSVYLTKDGRIS 108
E S YL DG +
Sbjct: 67 EASRYLRPDGELP 79
Score = 28.5 bits (64), Expect = 7.0
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 333 EVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLN------ATQVEKLIK 386
++ + DR+ S +Q+L G KP + + GL V +
Sbjct: 8 HLEELYDRVGSWKQALDSIPYSIGL-KPLKNFESFDELLSLGGLLNDLLEAMEAVHGQLN 66
Query: 387 EHSVYLTKDGRIS 399
E S YL DG +
Sbjct: 67 EASRYLRPDGELP 79
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 28.7 bits (65), Expect = 7.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 40 LTEVKGMADRIISMRQ 55
L EV G+ADRI+ MR+
Sbjct: 456 LPEVLGVADRIVVMRE 471
Score = 28.7 bits (65), Expect = 7.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 331 LTEVKGMADRIISMRQ 346
L EV G+ADRI+ MR+
Sbjct: 456 LPEVLGVADRIVVMRE 471
>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional.
Length = 481
Score = 28.4 bits (64), Expect = 8.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 160 VNKINLGVGAYRDDQGKPYVLPSV 183
+N I G GAY D G P+V +V
Sbjct: 101 LNAIGGGTGAYTDSAGYPFVRKAV 124
>gnl|CDD|234639 PRK00109, PRK00109, Holliday junction resolvase-like protein;
Reviewed.
Length = 138
Score = 27.0 bits (61), Expect = 9.4
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 86 NATQVEKLIKEHSVY-------LTKDGRISMAGVTSKNVGYLAKAIHANGSLPIRFQDAR 138
+ ++EKLIKE L DG G ++ A + LP+ D R
Sbjct: 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTE---GPRTERARKFANRLEGRFGLPVVLVDER 98
Query: 139 TSSV 142
S+V
Sbjct: 99 LSTV 102
>gnl|CDD|193544 cd05668, M20_Acy1_like3, M20 Peptidase Aminoacylase 1 subfamily.
Peptidase M20 family, Uncharacterized subfamily of
bacterial uncharacterized proteins predicted as putative
amidohydrolases. These are a class of zinc binding
homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic
N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 374
Score = 28.0 bits (63), Expect = 9.8
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 14/43 (32%)
Query: 207 DFGKLAAQ-------LAYGEDCPQLK-------DNLISIVQGI 235
DFG+ AQ L GED PQL D LI I I
Sbjct: 323 DFGRFGAQAKAAMFFLGSGEDHPQLHNPDYDFPDELIPIGVRI 365
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,384,168
Number of extensions: 2094990
Number of successful extensions: 1960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1942
Number of HSP's successfully gapped: 34
Length of query: 420
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 321
Effective length of database: 6,546,556
Effective search space: 2101444476
Effective search space used: 2101444476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)