RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16707
(420 letters)
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 227 bits (580), Expect = 2e-70
Identities = 50/122 (40%), Positives = 75/122 (61%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K +IR YS+PP HG IV +L P+L+A W+ E+ M DRI +MR L + L+ G
Sbjct: 299 KRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE 358
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
+ ++ I Q GMF Y+GL + QV++L +E +Y GRI +A + ++N+ +A AI AV
Sbjct: 359 RDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAAV 418
Query: 419 TK 420
K
Sbjct: 419 LK 420
Score = 221 bits (565), Expect = 4e-68
Identities = 48/119 (40%), Positives = 73/119 (61%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K +IR YS+PP HG IV +L P+L+A W+ E+ M DRI +MR L + L+ G
Sbjct: 299 KRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE 358
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
+ ++ I Q GMF Y+GL + QV++L +E +Y GRI +A + ++N+ +A AI A
Sbjct: 359 RDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAA 417
Score = 192 bits (490), Expect = 4e-57
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L EAF DT K+NLGVG Y ++ GK +L +V+ A++ + L + Y PI G +
Sbjct: 39 LNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYD 98
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+L G+D P + ++ Q + GTG+L++GA FL+
Sbjct: 99 ASVQKLLLGDDSPLIAAG--------------------RVVTAQALGGTGALKIGADFLR 138
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
P KV + P+W NH + G E
Sbjct: 139 TLNPKAKV-AISDPSWENHRALFDMAGFE 166
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 225 bits (577), Expect = 3e-70
Identities = 38/121 (31%), Positives = 66/121 (54%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
L R YS PP HGA+IV +L P+L+A W+ E++ + ++ +R+ L L+ +
Sbjct: 273 AFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGS 332
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
+ + + GMF G QV+++ +E +Y+ D RI++AG+ + LA+AI V
Sbjct: 333 DRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392
Query: 419 T 419
Sbjct: 393 G 393
Score = 220 bits (564), Expect = 3e-68
Identities = 37/119 (31%), Positives = 65/119 (54%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
L R YS PP HGA+IV +L P+L+A W+ E++ + ++ +R+ L L+ +
Sbjct: 273 AFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGS 332
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
+ + + GMF G QV+++ +E +Y+ D RI++AG+ + LA+AI
Sbjct: 333 DRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391
Score = 184 bits (469), Expect = 3e-54
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L F+ D KI+LGVG Y+D G ++ +V A++ +L K YA + G P+F
Sbjct: 16 LMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQ 75
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
K +L G+ LK + + GTG+LR +
Sbjct: 76 KAMGELILGDG---LKSE--------------TTAT------LATVGGTGALRQALELAR 112
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
P +V +V PTW NH+ I GL
Sbjct: 113 MANPDLRV-FVSDPTWPNHVSIMNFMGLP 140
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 225 bits (577), Expect = 4e-70
Identities = 84/122 (68%), Positives = 97/122 (79%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
KILIR YS+PP++GARI IL P+L+ +WL EVKGMADRIISMR L NL+KEGS+
Sbjct: 280 KILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS 339
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
W HITDQIGMFC+TGL QVE+L KE S+Y+TKDGRIS+AGV S NVGYLA AIH V
Sbjct: 340 HNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQV 399
Query: 419 TK 420
TK
Sbjct: 400 TK 401
Score = 219 bits (561), Expect = 8e-68
Identities = 81/119 (68%), Positives = 94/119 (78%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
KILIR YS+PP++GARI IL P+L+ +WL EVKGMADRIISMR L NL+KEGS+
Sbjct: 280 KILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS 339
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
W HITDQIGMFC+TGL QVE+L KE S+Y+TKDGRIS+AGV S NVGYLA AIH
Sbjct: 340 HNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQ 398
Score = 198 bits (505), Expect = 1e-59
Identities = 73/149 (48%), Positives = 93/149 (62%), Gaps = 20/149 (13%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
+TEAFK+DTN K+NLGVGAYRDD GKPYVL V++A+ ++ K +DKEY PI G DF
Sbjct: 18 VTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFT 77
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+ +A+LA GE+ K R VQGISGTGSLRVGA FL+
Sbjct: 78 RASAELALGENSEAFKSG--------------RYVT------VQGISGTGSLRVGANFLQ 117
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
FF + +Y+P P+WGNH PI + GL+
Sbjct: 118 RFFKFSRDVYLPKPSWGNHTPIFRDAGLQ 146
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 225 bits (576), Expect = 5e-70
Identities = 56/122 (45%), Positives = 81/122 (66%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
+LIR Y++PP++GA +V IL DP+L A W E+K M+ RI +R+ L L+ GS
Sbjct: 288 ALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSV 347
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
W+HI Q+GM YTGL QVE L E+ +Y+T +GR +++G+ S NV Y+++AIH V
Sbjct: 348 HDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNV 407
Query: 419 TK 420
TK
Sbjct: 408 TK 409
Score = 219 bits (561), Expect = 1e-67
Identities = 53/119 (44%), Positives = 78/119 (65%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
+LIR Y++PP++GA +V IL DP+L A W E+K M+ RI +R+ L L+ GS
Sbjct: 288 ALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSV 347
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
W+HI Q+GM YTGL QVE L E+ +Y+T +GR +++G+ S NV Y+++AIH
Sbjct: 348 HDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHN 406
Score = 188 bits (479), Expect = 1e-55
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L + F+ D K+NL +G YRDD +P+VL VKQA + +YAP+ G F
Sbjct: 31 LGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-----LGTNMDYAPVTGIASFV 85
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+ A +L +G C L+D R+ + Q + GTG+LR+G L
Sbjct: 86 EEAQKLCFGPTCAALRDG--------------RIAS------CQTLGGTGALRIGGDLLN 125
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
F IY P + NH I G+E
Sbjct: 126 RFVANCNRIYGPDVGYPNHESIFAKAGME 154
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 224 bits (572), Expect = 2e-69
Identities = 53/122 (43%), Positives = 79/122 (64%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
+IR+ S+PP +GA+IV ++L P+L QW ++ M+ RI MR +L+D+L K G+
Sbjct: 288 AKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP 347
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
W+HI +Q GMF +TGL V++L + H+VYL GR S+AG+ NV Y+AKAI V
Sbjct: 348 GNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEV 407
Query: 419 TK 420
+
Sbjct: 408 VR 409
Score = 218 bits (558), Expect = 3e-67
Identities = 52/119 (43%), Positives = 77/119 (64%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
+IR+ S+PP +GA+IV ++L P+L QW ++ M+ RI MR +L+D+L K G+
Sbjct: 288 AKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP 347
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
W+HI +Q GMF +TGL V++L + H+VYL GR S+AG+ NV Y+AKAI
Sbjct: 348 GNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDE 406
Score = 186 bits (474), Expect = 7e-55
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 22/150 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLN-KNLDKEYAPIIGAPDF 208
+ + + +D K++LG+GAYRDD GKP+VLPSVK A++++ N + + EY I G P
Sbjct: 19 IKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSL 78
Query: 209 GKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFL 268
AA++ +G L+++ RV + VQ +SGTG+L + A F
Sbjct: 79 TSNAAKIIFGTQSDALQED--------------RVIS------VQSLSGTGALHISAKFF 118
Query: 269 KNFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
FFP + V Y+ PTW NH+ I ++ GL+
Sbjct: 119 SKFFPDKLV-YLSKPTWANHMAIFENQGLK 147
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 222 bits (569), Expect = 4e-69
Identities = 52/120 (43%), Positives = 74/120 (61%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K IRA YS+PP HGA +V IL + L+A W E+ M RI MRQ + LQ++G+N
Sbjct: 276 KAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGAN 335
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
+ ++ I Q GMF ++GL QV +L +E VY GR+++AG+T N+ L +AI AV
Sbjct: 336 RDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAV 395
Score = 220 bits (562), Expect = 5e-68
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K IRA YS+PP HGA +V IL + L+A W E+ M RI MRQ + LQ++G+N
Sbjct: 276 KAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGAN 335
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
+ ++ I Q GMF ++GL QV +L +E VY GR+++AG+T N+ L +AI A
Sbjct: 336 RDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVA 394
Score = 192 bits (491), Expect = 1e-57
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L + F+ D KINLG+G Y+D+ GK VL SVK+A++ +L K Y I G P+FG
Sbjct: 16 LADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFG 75
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+ +L +G+ + D + Q GTG+LRV A FL
Sbjct: 76 RCTQELLFGKGSALINDK--------------------RARTAQTPGGTGALRVAADFLA 115
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
++V +V P+W NH + GLE
Sbjct: 116 KNTSVKRV-WVSNPSWPNHKSVFNSAGLE 143
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 222 bits (569), Expect = 6e-69
Identities = 55/120 (45%), Positives = 77/120 (64%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K +R YSSPP GA++V +L D LKA WL EV+ M RI++MRQ L L E
Sbjct: 277 KATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPE 336
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
+ ++++ +Q GMF YTGL+A QV++L +E VYL GR+ +AG+ + NV +AKA AV
Sbjct: 337 RNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAV 396
Score = 219 bits (561), Expect = 6e-68
Identities = 54/119 (45%), Positives = 76/119 (63%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K +R YSSPP GA++V +L D LKA WL EV+ M RI++MRQ L L E
Sbjct: 277 KATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPE 336
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
+ ++++ +Q GMF YTGL+A QV++L +E VYL GR+ +AG+ + NV +AKA A
Sbjct: 337 RNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAA 395
Score = 187 bits (476), Expect = 2e-55
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKN-LDKEYAPIIGAPDF 208
L E FK+D +K+NL +G Y ++ G L +V +A+ + + Y P+ G +
Sbjct: 16 LMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCY 75
Query: 209 GKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFL 268
A L +G D P LK +++ +Q + G+G+L+VGA FL
Sbjct: 76 RHAIAPLLFGADHPVLKQQ--------------------RVATIQTLGGSGALKVGADFL 115
Query: 269 KNFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
K +FP V +V PTW NH+ I G E
Sbjct: 116 KRYFPESGV-WVSDPTWENHVAIFAGAGFE 144
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 222 bits (569), Expect = 8e-69
Identities = 60/122 (49%), Positives = 80/122 (65%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
+ ++R +S+PP GARIV L DP+L +W VK MADRI+SMR L+ L+ +
Sbjct: 288 QKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTP 347
Query: 359 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
WNHITDQIGMF +TGLN QVE LI + +YL GRI+M G+T+KN+ Y+A +IH
Sbjct: 348 GTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEA 407
Query: 419 TK 420
Sbjct: 408 VT 409
Score = 219 bits (559), Expect = 2e-67
Identities = 60/119 (50%), Positives = 80/119 (67%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
+ ++R +S+PP GARIV L DP+L +W VK MADRI+SMR L+ L+ +
Sbjct: 288 QKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTP 347
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
WNHITDQIGMF +TGLN QVE LI + +YL GRI+M G+T+KN+ Y+A +IH
Sbjct: 348 GTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHE 406
Score = 184 bits (470), Expect = 2e-54
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 25/156 (16%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNK-NLDKEYAPIIGAPDF 208
L F++D + K+NLGVGAYR D +P+VLP V++ ++ + N +L+ EY PI+G +F
Sbjct: 20 LIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEF 79
Query: 209 GKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFL 268
A++LA G+D P L++ RVG VQ + GTG+LR+GA FL
Sbjct: 80 RTCASRLALGDDSPALQEK--------------RVGG------VQSLGGTGALRIGAEFL 119
Query: 269 KNFFPG----EKVIYVPTPTWGNHIPICKHTGLEKI 300
++ G + +YV +PTW NH + G + I
Sbjct: 120 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDI 155
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 212 bits (543), Expect = 4e-65
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQ----K 354
++R FYSSP IH RI+ ++L + LK W+ E+ ++ RI + R + L+ K
Sbjct: 279 CFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK 338
Query: 355 EGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKA 414
N WN Q G+F + L A E L K H +Y+ +GRI+++G+T NV Y+A
Sbjct: 339 YNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADK 397
Query: 415 IHAVTK 420
I
Sbjct: 398 ICLSLS 403
Score = 209 bits (535), Expect = 7e-64
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQ----K 63
++R FYSSP IH RI+ ++L + LK W+ E+ ++ RI + R + L+ K
Sbjct: 279 CFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK 338
Query: 64 EGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKA 123
N WN Q G+F + L A E L K H +Y+ +GRI+++G+T NV Y+A
Sbjct: 339 YNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADK 397
Query: 124 IHA 126
I
Sbjct: 398 ICL 400
Score = 191 bits (488), Expect = 5e-57
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 22/149 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
FK+DT KINL +G +D G ++ SV AD++V +K Y G DF
Sbjct: 19 TAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNGTEDFS 78
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
L L +G + ++D ++ +Q I GTG++ V FLK
Sbjct: 79 TLTQNLIFGNNSKYIEDK--------------KICT------IQCIGGTGAIFVLLEFLK 118
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
+ +YV P + NH+ + + G
Sbjct: 119 MLNV--ETLYVTNPPYINHVNMIESRGFN 145
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 212 bits (541), Expect = 2e-64
Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
+ IR +S IHGA IVQ I+ D +L + VK M+ RI MR L +L K +
Sbjct: 315 TLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTP 374
Query: 359 KP-----WNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTK-DGRISMAGVTSKNVGYLA 412
P W+HI IGMF +TGL V+ L ++ S+YL K GR+SM G+T N Y+A
Sbjct: 375 GPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDYVA 434
Query: 413 KAIHAVTK 420
+AIH
Sbjct: 435 EAIHDAVT 442
Score = 208 bits (532), Expect = 5e-63
Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
+ IR +S IHGA IVQ I+ D +L + VK M+ RI MR L +L K +
Sbjct: 315 TLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTP 374
Query: 68 KP-----WNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTK-DGRISMAGVTSKNVGYLA 121
P W+HI IGMF +TGL V+ L ++ S+YL K GR+SM G+T N Y+A
Sbjct: 375 GPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDYVA 434
Query: 122 KAIHA 126
+AIH
Sbjct: 435 EAIHD 439
Score = 181 bits (461), Expect = 1e-52
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 23/160 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLN--KNLDKEYAPIIGAPD 207
LT + DTN K+NLGVGAYRD+ GKP++LP+VK+A+ I+ + +KEY P+ G P
Sbjct: 39 LTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPL 98
Query: 208 FGKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAF 267
F + A L +G+D ++ R+ + Q +SGTGSL +G F
Sbjct: 99 FLEAAQFLMFGKDSKAAQEG--------------RIAS------CQSLSGTGSLHIGFEF 138
Query: 268 LKNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFYS 307
L + P + Y+P+ TW NH I + + Y+
Sbjct: 139 LHLWMPKAEF-YMPSTTWPNHYGIYDKVFNKLKVPYKEYT 177
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 197 bits (502), Expect = 7e-59
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 8/126 (6%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
K RA +S+ R + I+ DP ++ E I K + G
Sbjct: 292 KSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG-- 349
Query: 359 KPWNHITDQIGMFCYTGLNATQ--VEKLIKEH--SVYLTKDGRISMAGVTSKNVGYLAKA 414
+ + G F ++ E+L KEH + L RI+ G+ + LA+
Sbjct: 350 --LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEK 407
Query: 415 IHAVTK 420
I+ K
Sbjct: 408 IYNAMK 413
Score = 192 bits (489), Expect = 5e-57
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 8/123 (6%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K RA +S+ R + I+ DP ++ E I K + G
Sbjct: 292 KSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG-- 349
Query: 68 KPWNHITDQIGMFCYTGLNATQ--VEKLIKEH--SVYLTKDGRISMAGVTSKNVGYLAKA 123
+ + G F ++ E+L KEH + L RI+ G+ + LA+
Sbjct: 350 --LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEK 407
Query: 124 IHA 126
I+
Sbjct: 408 IYN 410
Score = 166 bits (423), Expect = 2e-47
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 27/152 (17%)
Query: 147 SNLLTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAP 206
+ K++ N +N +GA D++G L +VK+ + L+ + YAPI G P
Sbjct: 25 AGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEE-YLSLSDSEHVGYAPIAGIP 83
Query: 207 DFGKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAA 266
DF A + +G P + I + GTG +
Sbjct: 84 DFLCAAEKECFGNFRP---EGHIRSIATAGGTGGIHHLIHN------------------- 121
Query: 267 FLKNFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
+ + WG + IC TG
Sbjct: 122 ----YTEPGDEVLTADWYWGAYRVICSDTGRT 149
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 192 bits (489), Expect = 4e-57
Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 9/126 (7%)
Query: 299 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 358
R +S+ H A+ + L + K + E+ + + + S ++
Sbjct: 291 AHSARCNWSNGT-HAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENK-- 347
Query: 359 KPWNHITDQIGMFCYTGLNAT--QVEKLIKEH--SVYLTKDGRISMAGVTSKNVGYLAKA 414
I G F + + V+ L KE+ ++ K R+++ GV + + L +
Sbjct: 348 --LTMIPYFGGFFTFIPTDKAFDIVKDLEKENIFTIPSAKGIRVAICGVGEEKIPKLVQR 405
Query: 415 IHAVTK 420
+ T
Sbjct: 406 LAFYTN 411
Score = 186 bits (474), Expect = 6e-55
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
R +S+ H A+ + L + K + E+ + + + S ++
Sbjct: 291 AHSARCNWSNGT-HAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENK-- 347
Query: 68 KPWNHITDQIGMFCYTGLNAT--QVEKLIKEH--SVYLTKDGRISMAGVTSKNVGYLAKA 123
I G F + + V+ L KE+ ++ K R+++ GV + + L +
Sbjct: 348 --LTMIPYFGGFFTFIPTDKAFDIVKDLEKENIFTIPSAKGIRVAICGVGEEKIPKLVQR 405
Query: 124 IHA 126
+
Sbjct: 406 LAF 408
Score = 170 bits (432), Expect = 8e-49
Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 27/149 (18%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
A +K IN +G DD+GK LPSV ++++ YAPI G D+
Sbjct: 27 ANAAIEKYGREAVINAALGTLLDDKGKIIALPSVYDR-LDEMDRSHIASYAPIEGEKDYR 85
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
K+ +G P + IS + GTG++R
Sbjct: 86 KIVIDTLFGPYKP---EGYISAIATPGGTGAIRSA----------------------IFS 120
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
G+ + W + IC+ G
Sbjct: 121 YLDEGDPL-ICHDYYWAPYRKICEEFGRN 148
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 144 bits (366), Expect = 3e-39
Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 13/131 (9%)
Query: 299 KILIRAFYSSPPIHGARIVQEIL-GDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGS 357
K LIR+ SS P+ V+ +L + + + ++ + +R ++ + +
Sbjct: 301 KGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH- 359
Query: 358 NKPWNHITDQIGMFCYTGLNATQVE----KLIKEHSVYL----TKDGRISMAGVTSKNVG 409
W G F ++ E LI ++S+ + D RI+ + V ++
Sbjct: 360 ---WQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIP 416
Query: 410 YLAKAIHAVTK 420
++ +I
Sbjct: 417 HVFDSIAKAID 427
Score = 142 bits (360), Expect = 2e-38
Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 8 KILIRAFYSSPPIHGARIVQEIL-GDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGS 66
K LIR+ SS P+ V+ +L + + + ++ + +R ++ + +
Sbjct: 301 KGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH- 359
Query: 67 NKPWNHITDQIGMFCYTGLNATQVE----KLIKEHSVYL----TKDGRISMAGVTSKNVG 118
W G F ++ E LI ++S+ + D RI+ + V ++
Sbjct: 360 ---WQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIP 416
Query: 119 YLAKAIHA 126
++ +I
Sbjct: 417 HVFDSIAK 424
Score = 122 bits (308), Expect = 5e-31
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 25/156 (16%)
Query: 151 TEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFGK 210
+ + N +G + GK + S A L + YAP G +
Sbjct: 38 ILSQSAEAKSTTYNATIGMATNKDGKMFA--SSLDAMFNDLTPDEIFPYAPPQGIEELRD 95
Query: 211 LAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLKN 270
L Q ++ DN+ + + T L + N
Sbjct: 96 LWQQKMLRDNPELSIDNMSRPIVTNALTHGLS--------------------LVGDLFVN 135
Query: 271 FFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFY 306
+ ++ +P WGN+ + + +
Sbjct: 136 --QDDTIL-LPEHNWGNYKLVFNTRNGANLQTYPIF 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 2e-10
Identities = 66/457 (14%), Positives = 115/457 (25%), Gaps = 170/457 (37%)
Query: 2 LFHNAKKILIRAFYSSPPIHGARIVQ--EILGDPKLKAQWLTEVKGMADRIISMRQSLKD 59
F A + L F P E +L ++L V + + + D
Sbjct: 26 SFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV---SSLVEPSKVGQFD 81
Query: 60 NLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNV-- 117
+ + L + H++ V +K +
Sbjct: 82 QVLNLC----LTEFENCY-------LEGNDI------HALAAKLLQENDTTLVKTKELIK 124
Query: 118 GYLAKAIHANGSLPIRFQDARTSSVKVPSSNLLTEAFKKDTNVNKINLGVGAYRDDQG-- 175
Y+ I A K +S L + + + I G G QG
Sbjct: 125 NYITARIMAKRPFD-----------KKSNSALFRAVGEGNAQLVAI-FG-G-----QGNT 166
Query: 176 --------------KPYVLPSVKQADEIVLN-------------KNLD------------ 196
V +K + E + + L+
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 197 -KEY-------APIIGAPDFGKLAAQLA-YGEDCPQLK---DNLISIVQGISGTGSLRVG 244
K+Y P+IG QLA Y L L S ++G +G V
Sbjct: 227 DKDYLLSIPISCPLIGV-------IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 245 AAFQISIVQGISGTGSLRVGAAFLKNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRA 304
A I+ T S +F + + K +
Sbjct: 280 AVA-------IAETDS---WESFFVS--------------------------VRKAITVL 303
Query: 305 FYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHI 364
F+ I G R E + L S+ + +N EG P
Sbjct: 304 FF----I-GVR-CYEAYPNTSLPP--------------SILEDSLEN--NEGVPSP---- 337
Query: 365 TDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMA 401
M + L QV+ + + + +L ++ ++
Sbjct: 338 -----MLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Score = 51.2 bits (122), Expect = 6e-07
Identities = 53/306 (17%), Positives = 93/306 (30%), Gaps = 115/306 (37%)
Query: 3 FH-NAKKILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNL 61
F + +K + F+ I G R E + L S+ + +N
Sbjct: 292 FFVSVRKAITVLFF----I-GVR-CYEAYPNTSLPP--------------SILEDSLEN- 330
Query: 62 QKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGV-TSKNV--- 117
EG P M + L QV+ + + + +L ++ ++ V +KN+
Sbjct: 331 -NEGVPSP---------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 118 GYLAKAIHANGSLPIRFQDARTSS----VKVPS-------------------SNLLTEA- 153
G ++++ L + + A+ S ++P S+LL A
Sbjct: 381 GP-PQSLYG---LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 154 --FKKDTNVNKIN-----LGVGAYRDDQGK------PYVLPSVKQADEIVLNKNLDKEYA 200
KD N ++ + + Y G + + D I+ + E
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCII-RLPVKWETT 493
Query: 201 PIIGAP---DFGKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISG 257
A DFG P G SG G L + G
Sbjct: 494 TQFKATHILDFG------------P----------GGASGLGVL---------THRNKDG 522
Query: 258 TGSLRV 263
TG +RV
Sbjct: 523 TG-VRV 527
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 5e-04
Identities = 48/364 (13%), Positives = 102/364 (28%), Gaps = 142/364 (39%)
Query: 136 DARTSSVKVPSSNLLT---EAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLN 192
D T + ++L+ +AF + + + D K +L S ++ D I+++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDV--------QDMPKS-IL-SKEEIDHIIMS 57
Query: 193 KN------------LDKE---YAPIIG---APDFGKLAAQLAYGEDCP------------ 222
K+ L K+ + ++ L + + + P
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 223 ---------------------QLKDNLIS-------IVQGISGTG--SLRVGAAFQISIV 252
+L+ L+ ++ G+ G+G + + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 253 QGISGTGSLRVGAAFLKNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFYSSPPIH 312
+ I+ W N + ++L + Y P
Sbjct: 178 C-----------------KMDFK--IF-----WLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 313 GARIVQEILGDPKLKAQWLTEVKGMADRIISMRQ---SLK--DNLQKEGSNKPWNH---- 363
+R + + KL+ + R++ + L N+Q + K WN
Sbjct: 214 TSRS--DHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQ---NAKAWNAFNLS 265
Query: 364 -----------ITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLA 412
+TD + AT + HS+ LT D + L
Sbjct: 266 CKILLTTRFKQVTDFLS-------AATTTHISLDHHSMTLTPD----------EVKSLLL 308
Query: 413 KAIH 416
K +
Sbjct: 309 KYLD 312
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.19
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 14/37 (37%)
Query: 184 KQADEIVLNKNLD---KEYAPIIGAPDFGKLA--AQL 215
KQ + K L K YA AP LA A +
Sbjct: 19 KQ--AL---KKLQASLKLYAD-DSAP---ALAIKATM 46
>1vhx_A Putative holliday junction resolvase; structural genomics,
hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Length = 150
Score = 29.9 bits (68), Expect = 0.82
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 87 ATQVEKLIKEHSVY-------LTKDGRISMAGVTSKNVGYLAKAIHANGSLPIRFQDART 139
+++ +LIK++++ +G + G + AK + ++P+ D R
Sbjct: 44 LSRLSELIKDYTIDKIVLGFPKNMNGTV---GPRGEASQTFAKVLETTYNVPVVLWDERL 100
Query: 140 SSVKVPSSNLLTEA 153
+++ +L A
Sbjct: 101 TTMAA--EKMLIAA 112
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2
function project, S2F, unknown function; 1.60A
{Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Length = 138
Score = 29.0 bits (66), Expect = 1.6
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 86 NATQVEKLIKEHSVY-------LTKDGRISMAGVTSKNVGYLAKAIHANGSLPIRFQDAR 138
+ +E+L+KE L DG + A IH + ++ D R
Sbjct: 41 DWNIIERLLKEWQPDEIIVGLPLNMDGT---EQPLTARARKFANRIHGRFGVEVKLHDER 97
Query: 139 TSSV 142
S+V
Sbjct: 98 LSTV 101
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex,
response regulator, receiver domain, two-component
signal transduction; HET: BFD; 1.96A {Borrelia
burgdorferi}
Length = 157
Score = 28.7 bits (64), Expect = 2.0
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 21 HGARIVQEILGDPKLKAQWLTEVKGMADRII------SMRQSLKDNLQKEG 65
HG+ I D K + + G+ ++ + L EG
Sbjct: 10 HGSIQKTTIAADSSSKPRGINYDTGIPFNVLIVDDSVFTVKQLTQIFTSEG 60
Score = 28.7 bits (64), Expect = 2.0
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 312 HGARIVQEILGDPKLKAQWLTEVKGMADRII------SMRQSLKDNLQKEG 356
HG+ I D K + + G+ ++ + L EG
Sbjct: 10 HGSIQKTTIAADSSSKPRGINYDTGIPFNVLIVDDSVFTVKQLTQIFTSEG 60
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 29.5 bits (65), Expect = 2.4
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 10/128 (7%)
Query: 264 GAAFLKNFFPGEKVIYVPTPTWGNHI----PICKHTG--LEKILIRAFYSSPPIHG---- 313
F+ FPG V G P+ + ++A +
Sbjct: 97 AQFFITGAFPGCDVPVHHQEKMGTMDPTFNPVITDNSPEFREKALKAMETERQKMQLTES 156
Query: 314 ARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCY 373
++++++ + +V +AD + + G K N + D + Y
Sbjct: 157 YKLLEQMTNYADSPSCKEKKVCSLADAKDTFSADYEKEPGVSGPLKVGNSLVDAFTLQYY 216
Query: 374 TGLNATQV 381
G A QV
Sbjct: 217 EGFPADQV 224
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 28.7 bits (64), Expect = 3.2
Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 18/145 (12%)
Query: 83 TGLNATQVEKLIKEHSVYLTKDGRISMA----GVTSKNVGYLAKAIHANGSLPIRFQDAR 138
GLN T + + ++ S D ++MA + S GY A++ L +
Sbjct: 122 NGLNPTYMTQALRALSAKAGPDMILTMAPQTIDMQSTQGGYFQTALNVKDILTVVNMQYY 181
Query: 139 TSSVKVPSSNLLTEAFKKDTNV-------------NKINLGVGAYRDDQGKPYVLPS-VK 184
S + + D +++ LG+ A G YV PS V
Sbjct: 182 NSGTMLGCDGKVYAQGTVDFLTALACIQLEGGLAPSQVGLGLPASTRAAGGGYVSPSVVN 241
Query: 185 QADEIVLNKNLDKEYAPIIGAPDFG 209
A + + + P PD
Sbjct: 242 AALDCLTKATNCGSFKPSKTYPDLR 266
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,420,402
Number of extensions: 395942
Number of successful extensions: 1117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 54
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)