RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16707
(420 letters)
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 138 bits (348), Expect = 1e-37
Identities = 86/154 (55%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 267 FLKNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFYSSPPIHGARIVQEILGDPKL 326
GE+ + + KILIR YS+PP++GARI IL P+L
Sbjct: 249 AKNMGLYGERAGAFTVI-CRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPEL 307
Query: 327 KAQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIK 386
+ +WL EVKGMADRIISMR L NL+KEGS+ W HITDQIGMFC+TGL QVE+L K
Sbjct: 308 RKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTK 367
Query: 387 EHSVYLTKDGRISMAGVTSKNVGYLAKAIHAVTK 420
E S+Y+TKDGRIS+AGV S NVGYLA AIH VTK
Sbjct: 368 EFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK 401
Score = 127 bits (320), Expect = 1e-33
Identities = 81/126 (64%), Positives = 95/126 (75%)
Query: 1 MLFHNAKKILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDN 60
+ KILIR YS+PP++GARI IL P+L+ +WL EVKGMADRIISMR L N
Sbjct: 273 KRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN 332
Query: 61 LQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYL 120
L+KEGS+ W HITDQIGMFC+TGL QVE+L KE S+Y+TKDGRIS+AGV S NVGYL
Sbjct: 333 LKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYL 392
Query: 121 AKAIHA 126
A AIH
Sbjct: 393 AHAIHQ 398
Score = 112 bits (281), Expect = 3e-28
Identities = 84/261 (32%), Positives = 124/261 (47%), Gaps = 24/261 (9%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
+TEAFK+DTN K+NLGVGAYRDD GKPYVL V++A+ ++ K +DKEY PI G DF
Sbjct: 18 VTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFT 77
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+ +A+LA GE+ K + VQGISGTGSLRVGA FL+
Sbjct: 78 RASAELALGENSEAFKSG--------------------RYVTVQGISGTGSLRVGANFLQ 117
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFYSSPPIHGARIVQEILGDPKLKAQ 329
FF + +Y+P P+WGNH PI + GL+ R + E + K+
Sbjct: 118 RFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSI 177
Query: 330 WLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHS 389
L + A + + + K N + Y G + + +
Sbjct: 178 IL--LHACAHNPTGVDPRQEQWKELASVVKKRNLLA--YFDMAYQGFASGDINRDAWALR 233
Query: 390 VYLTKDGRISMAGVTSKNVGY 410
++ + + ++ +KN+G
Sbjct: 234 HFIEQGIDVVLSQSYAKNMGL 254
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
4932]}
Length = 412
Score = 136 bits (342), Expect = 1e-36
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 269 KNFFPGEKV--IYVPTPTWGNHIPICKHTGLE-KILIRAFYSSPPIHGARIVQEILGDPK 325
GE+V ++ + I + +IR+ S+PP +GA+IV ++L P+
Sbjct: 255 NAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPE 314
Query: 326 LKAQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLI 385
L QW ++ M+ RI MR +L+D+L K G+ W+HI +Q GMF +TGL V++L
Sbjct: 315 LTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLE 374
Query: 386 KEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAVTK 420
+ H+VYL GR S+AG+ NV Y+AKAI V +
Sbjct: 375 ETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVR 409
Score = 128 bits (321), Expect = 1e-33
Identities = 52/119 (43%), Positives = 77/119 (64%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
+IR+ S+PP +GA+IV ++L P+L QW ++ M+ RI MR +L+D+L K G+
Sbjct: 288 AKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP 347
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
W+HI +Q GMF +TGL V++L + H+VYL GR S+AG+ NV Y+AKAI
Sbjct: 348 GNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDE 406
Score = 102 bits (254), Expect = 2e-24
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 22/148 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLN-KNLDKEYAPIIGAPDF 208
+ + + +D K++LG+GAYRDD GKP+VLPSVK A++++ N + + EY I G P
Sbjct: 19 IKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSL 78
Query: 209 GKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFL 268
AA++ +G L+++ ++ VQ +SGTG+L + A F
Sbjct: 79 TSNAAKIIFGTQSDALQED--------------------RVISVQSLSGTGALHISAKFF 118
Query: 269 KNFFPGEKVIYVPTPTWGNHIPICKHTG 296
FFP + V PTW NH+ I ++ G
Sbjct: 119 SKFFPDKLVYL-SKPTWANHMAIFENQG 145
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 134 bits (338), Expect = 3e-36
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 267 FLKNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFYSSPPIHGARIVQEILGDPKL 326
E+V + + + K IRA YS+PP HGA +V IL + L
Sbjct: 245 SKNFGLYNERVGACTLVAA-DSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDAL 303
Query: 327 KAQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIK 386
+A W E+ M RI MRQ + LQ++G+N+ ++ I Q GMF ++GL QV +L +
Sbjct: 304 RAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLRE 363
Query: 387 EHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
E VY GR+++AG+T N+ L +AI AV
Sbjct: 364 EFGVYAVASGRVNVAGMTPDNMAPLCEAIVAV 395
Score = 128 bits (322), Expect = 7e-34
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K IRA YS+PP HGA +V IL + L+A W E+ M RI MRQ + LQ++G+N
Sbjct: 276 KAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGAN 335
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
+ ++ I Q GMF ++GL QV +L +E VY GR+++AG+T N+ L +AI A
Sbjct: 336 RDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVA 394
Score = 100 bits (250), Expect = 4e-24
Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L + F+ D KINLG+G Y+D+ GK VL SVK+A++ +L K Y I G P+FG
Sbjct: 16 LADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFG 75
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
+ +L +G+ + D Q GTG+LRV A F
Sbjct: 76 RCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFL--------------------- 114
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLEKI 300
K ++V P+W NH + GLE
Sbjct: 115 AKNTSVKRVWVSNPSWPNHKSVFNSAGLEVR 145
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 134 bits (338), Expect = 4e-36
Identities = 67/153 (43%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 269 KNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFYSSPPIHGARIVQEILGDPKLKA 328
E+V + I + + ++R +S+PP GARIV L DP+L
Sbjct: 259 NFGLYNERVGNLTVVAK-EPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFH 317
Query: 329 QWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEH 388
+W VK MADRI+SMR L+ L+ + WNHITDQIGMF +TGLN QVE LI +
Sbjct: 318 EWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQK 377
Query: 389 SVYLTKDGRISMAGVTSKNVGYLAKAIH-AVTK 420
+YL GRI+M G+T+KN+ Y+A +IH AVTK
Sbjct: 378 HIYLLPSGRINMCGLTTKNLDYVATSIHEAVTK 410
Score = 127 bits (319), Expect = 2e-33
Identities = 60/119 (50%), Positives = 80/119 (67%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
+ ++R +S+PP GARIV L DP+L +W VK MADRI+SMR L+ L+ +
Sbjct: 288 QKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTP 347
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
WNHITDQIGMF +TGLN QVE LI + +YL GRI+M G+T+KN+ Y+A +IH
Sbjct: 348 GTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHE 406
Score = 115 bits (288), Expect = 4e-29
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 17/158 (10%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVL-NKNLDKEYAPIIGAPDF 208
L F++D + K+NLGVGAYR D +P+VLP V++ ++ + N +L+ EY PI+G +F
Sbjct: 20 LIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEF 79
Query: 209 GKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFL 268
A++LA G+D P L++ + VQ + GTG+LR+GA F G +
Sbjct: 80 RTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKD--------- 130
Query: 269 KNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFY 306
+YV +PTW NH + G + I ++
Sbjct: 131 -------TPVYVSSPTWENHNGVFTTAGFKDIRSYRYW 161
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 132 bits (331), Expect = 3e-35
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 267 FLKNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFYSSPPIHGARIVQEILGDPKL 326
E+ + + G L R YS PP HGA+IV +L P+L
Sbjct: 242 SKNFGIYRERTGCLLAL-CADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPEL 300
Query: 327 KAQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIK 386
+A W+ E++ + ++ +R+ L L+ + + + + GMF G QV+++ +
Sbjct: 301 RADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKE 360
Query: 387 EHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
E +Y+ D RI++AG+ + LA+AI V
Sbjct: 361 EFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392
Score = 127 bits (319), Expect = 2e-33
Identities = 39/125 (31%), Positives = 67/125 (53%)
Query: 2 LFHNAKKILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNL 61
L A L R YS PP HGA+IV +L P+L+A W+ E++ + ++ +R+ L L
Sbjct: 267 LAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGEL 326
Query: 62 QKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLA 121
+ + + + + GMF G QV+++ +E +Y+ D RI++AG+ + LA
Sbjct: 327 RDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILA 386
Query: 122 KAIHA 126
+AI
Sbjct: 387 RAIIE 391
Score = 103 bits (256), Expect = 8e-25
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 24/149 (16%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADEIVLNKNLDKEYAPIIGAPDFG 209
L F+ D KI+LGVG Y+D G ++ +V A++ +L K YA + G P+F
Sbjct: 16 LMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQ 75
Query: 210 KLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLK 269
K +L G+ + + + + GTG+LR +
Sbjct: 76 KAMGELILGDGLK-----------------------SETTATLATVGGTGALRQALELAR 112
Query: 270 NFFPGEKVIYVPTPTWGNHIPICKHTGLE 298
P +V V PTW NH+ I GL
Sbjct: 113 MANPDLRVF-VSDPTWPNHVSIMNFMGLP 140
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 128 bits (322), Expect = 7e-34
Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 263 VGAAFLKNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAFYSSPPIHGARIVQEILG 322
+ GE+V + + + G K +R YSSPP GA++V +L
Sbjct: 242 SNSFSKIFSLYGERVGGLSVMCE-DAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300
Query: 323 DPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVE 382
D LKA WL EV+ M RI++MRQ L L E + ++++ +Q GMF YTGL+A QV+
Sbjct: 301 DEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVD 360
Query: 383 KLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHAV 418
+L +E VYL GR+ +AG+ + NV +AKA AV
Sbjct: 361 RLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAV 396
Score = 121 bits (303), Expect = 3e-31
Identities = 54/119 (45%), Positives = 76/119 (63%)
Query: 8 KILIRAFYSSPPIHGARIVQEILGDPKLKAQWLTEVKGMADRIISMRQSLKDNLQKEGSN 67
K +R YSSPP GA++V +L D LKA WL EV+ M RI++MRQ L L E
Sbjct: 277 KATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPE 336
Query: 68 KPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKDGRISMAGVTSKNVGYLAKAIHA 126
+ ++++ +Q GMF YTGL+A QV++L +E VYL GR+ +AG+ + NV +AKA A
Sbjct: 337 RNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAA 395
Score = 110 bits (274), Expect = 2e-27
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 150 LTEAFKKDTNVNKINLGVGAYRDDQGKPYVLPSVKQADE-IVLNKNLDKEYAPIIGAPDF 208
L E FK+D +K+NL +G Y ++ G L +V +A+ + + Y P+ G +
Sbjct: 16 LMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCY 75
Query: 209 GKLAAQLAYGEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFL 268
A L +G D P LK +++ +Q + G+G+L+VGA FL
Sbjct: 76 RHAIAPLLFGADHPVLKQQ--------------------RVATIQTLGGSGALKVGADFL 115
Query: 269 KNFFPGEKVIYVPTPTWGNHIPICKHTGLEKILIRAF 305
K +FP ++V PTW NH+ I G E +
Sbjct: 116 KRYFPE-SGVWVSDPTWENHVAIFAGAGFEVSTYPWY 151
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 27.8 bits (61), Expect = 2.8
Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 41/145 (28%)
Query: 163 INLGVGAYRDDQGKPYVLPSVKQADEIV--LNKNLDKE---YAPIIGAPDFGKLAAQLAY 217
+ G P IV L++ Y P G P + AQ
Sbjct: 33 CSFSAG-----------EPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQ 81
Query: 218 GEDCPQLKDNLISIVQGISGTGSLRVGAAFQISIVQGISGTGSLRVGAAFLKNFFPGEKV 277
++ + I + G Q I L PG++V
Sbjct: 82 RDNGLCYGADNILVTNGG----------------KQSIF--------NLMLAMIEPGDEV 117
Query: 278 IYVPTPTWGNHIPICKHTGLEKILI 302
I +P P W ++ + K +++
Sbjct: 118 I-IPAPFWVSYPEMVKLAEGTPVIL 141
>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein
beta subunit {Oxytricha nova [TaxId: 200597]}
Length = 216
Score = 25.8 bits (56), Expect = 8.5
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 127 NGSLPIRFQDARTSSVKVPSS------NLLTEAFKKDTN--VNKINLGVGAYRDDQGKPY 178
N SL +R R +S +V +S L+ +FK + +N V +RDD+ K
Sbjct: 84 NWSLELR----RVNSAEVFTSYANLEARLIVHSFKPNLQERLNPTRYPVNLFRDDEFKTT 139
Query: 179 VLPSVKQADEIVLNKNLDKEYAPIIGAPDFGKLA 212
+ A + +NK + + D K+A
Sbjct: 140 IQHFRHTALQAAINKTVKGD-----NLVDISKVA 168
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 194
Score = 25.8 bits (56), Expect = 9.1
Identities = 7/59 (11%), Positives = 18/59 (30%)
Query: 46 MADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKD 104
+A R + ++ L + + + H + + + + L Y D
Sbjct: 16 VAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSLLVDLTNTSRFYDRND 74
Score = 25.8 bits (56), Expect = 9.1
Identities = 7/59 (11%), Positives = 18/59 (30%)
Query: 337 MADRIISMRQSLKDNLQKEGSNKPWNHITDQIGMFCYTGLNATQVEKLIKEHSVYLTKD 395
+A R + ++ L + + + H + + + + L Y D
Sbjct: 16 VAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSLLVDLTNTSRFYDRND 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,544,253
Number of extensions: 73409
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 25
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)