Query psy16712
Match_columns 221
No_of_seqs 115 out of 321
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 20:06:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pm3_A MTH1895; unknown functi 68.6 1.9 6.6E-05 31.9 1.5 24 93-117 19-43 (97)
2 3htr_A Uncharacterized PRC-bar 49.7 6.7 0.00023 29.9 1.6 23 93-116 13-35 (120)
3 2v2f_A Penicillin binding prot 38.1 12 0.00042 20.7 1.1 12 104-115 7-18 (26)
4 2pjx_C Syntaxin-4; membrane tr 25.9 24 0.00084 20.4 1.0 18 96-113 4-21 (29)
5 3elg_A Uncharacterized peripla 23.1 51 0.0018 25.0 2.7 41 99-153 48-89 (128)
6 4esy_A CBS domain containing m 20.3 29 0.00099 26.3 0.8 14 102-115 50-63 (170)
7 3lqn_A CBS domain protein; csg 18.8 27 0.00094 25.5 0.3 17 104-120 119-136 (150)
8 3a0s_A Sensor protein; PAS-fol 18.3 47 0.0016 20.1 1.4 22 101-122 2-23 (96)
9 2w0n_A Sensor protein DCUS; si 17.4 63 0.0022 20.9 1.9 23 100-122 24-46 (118)
10 2k49_A UPF0339 protein SO_3888 17.2 71 0.0024 24.5 2.3 25 104-128 68-97 (118)
No 1
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=68.59 E-value=1.9 Score=31.86 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=19.9
Q ss_pred ccccc-hhhhcCcceecCCCceeeeh
Q psy16712 93 PFMRN-KEITDGLPVYDANNNLIGNS 117 (221)
Q Consensus 93 ~~mR~-~El~~GI~V~D~~G~~vG~S 117 (221)
-+||. +|+. |-+|+|+||+.+|+=
T Consensus 19 ~~Mr~~seL~-Gk~Vin~dG~~LG~V 43 (97)
T 1pm3_A 19 SHMRIVEEMV-GKEVLDSSAKVIGKV 43 (97)
T ss_dssp -CEETTTTSS-SCEEECTTSCEEEEE
T ss_pred eEEEeehhCC-CCEeECCCCCEEeEE
Confidence 36999 7875 999999999999963
No 2
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=49.74 E-value=6.7 Score=29.88 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=19.4
Q ss_pred ccccchhhhcCcceecCCCceeee
Q psy16712 93 PFMRNKEITDGLPVYDANNNLIGN 116 (221)
Q Consensus 93 ~~mR~~El~~GI~V~D~~G~~vG~ 116 (221)
-+||..|+ .|-+|+|.||+.+|+
T Consensus 13 ~l~~~~~l-~G~~V~~~dG~~iG~ 35 (120)
T 3htr_A 13 KLIGSDKV-QGTAVYGPDGEKIGS 35 (120)
T ss_dssp SEEEHHHH-TTCEEECTTSCEEEE
T ss_pred ceEehhhc-cCCEEEcCCCCEEEE
Confidence 36777776 799999999999996
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=38.14 E-value=12 Score=20.72 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=10.1
Q ss_pred cceecCCCceee
Q psy16712 104 LPVYDANNNLIG 115 (221)
Q Consensus 104 I~V~D~~G~~vG 115 (221)
-.+||+||+++.
T Consensus 7 s~IYD~~g~~i~ 18 (26)
T 2v2f_A 7 SKIYDNKNQLIA 18 (26)
T ss_pred CEEEeCCCCEee
Confidence 468999999875
No 4
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=25.86 E-value=24 Score=20.42 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.2
Q ss_pred cchhhhcCcceecCCCce
Q psy16712 96 RNKEITDGLPVYDANNNL 113 (221)
Q Consensus 96 R~~El~~GI~V~D~~G~~ 113 (221)
|..|++.|=.+-|++.++
T Consensus 4 rthelrqgdnisddedev 21 (29)
T 2pjx_C 4 RTHELRQGDNISDDEDEV 21 (29)
T ss_pred chhhhhcCCCCCCcccee
Confidence 567999999999988765
No 5
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=23.12 E-value=51 Score=25.00 Aligned_cols=41 Identities=12% Similarity=0.348 Sum_probs=29.7
Q ss_pred hhhcCcce-ecCCCceeeehHHHHHHhhhHhHhhhhhhcccccchHHHHHHHHHhh
Q psy16712 99 EITDGLPV-YDANNNLIGNSQKAAVTGISMVVVSRIGMATPGMIGIPVILNYLERK 153 (221)
Q Consensus 99 El~~GI~V-~D~~G~~vG~S~~Aa~~Ai~~t~~SRi~~~~P~m~lpp~im~~lek~ 153 (221)
||.+|.+| +|.+|+-+..+. +- -.+|.=.||.-+++.+++.
T Consensus 48 ~l~ng~el~Fd~~G~w~~id~-------------~~-~~ip~~~lP~~V~~~i~~~ 89 (128)
T 3elg_A 48 KLADGIELEFNSKGEWLEIDC-------------KN-KSVPSTFIPQAISKYMKAN 89 (128)
T ss_dssp EETTSCEEEECTTSCEEEEEC-------------TT-SCCCGGGSCHHHHHHHHHH
T ss_pred EECCCcEEEEeCCCCEEEecC-------------CC-CcCchHHCCHHHHHHHHHH
Confidence 47789998 799999887650 00 1456667899999998764
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=20.34 E-value=29 Score=26.29 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=12.8
Q ss_pred cCcceecCCCceee
Q psy16712 102 DGLPVYDANNNLIG 115 (221)
Q Consensus 102 ~GI~V~D~~G~~vG 115 (221)
.+++|.|++|+.+|
T Consensus 50 ~~~pVvd~~g~lvG 63 (170)
T 4esy_A 50 GCAPVVDQNGHLVG 63 (170)
T ss_dssp SEEEEECTTSCEEE
T ss_pred eEEEEEcCCccEEE
Confidence 57899999999999
No 7
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=18.76 E-value=27 Score=25.50 Aligned_cols=17 Identities=12% Similarity=0.258 Sum_probs=13.4
Q ss_pred cceecCCCceee-ehHHH
Q psy16712 104 LPVYDANNNLIG-NSQKA 120 (221)
Q Consensus 104 I~V~D~~G~~vG-~S~~A 120 (221)
++|.|++|+.+| .|+.-
T Consensus 119 l~Vvd~~g~~~Giit~~d 136 (150)
T 3lqn_A 119 ICAVNEDGYFEGILTRRA 136 (150)
T ss_dssp EEEECTTCBEEEEEEHHH
T ss_pred EEEECCCCcEEEEEEHHH
Confidence 999999999999 34433
No 8
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=18.31 E-value=47 Score=20.12 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=17.2
Q ss_pred hcCcceecCCCceeeehHHHHH
Q psy16712 101 TDGLPVYDANNNLIGNSQKAAV 122 (221)
Q Consensus 101 ~~GI~V~D~~G~~vG~S~~Aa~ 122 (221)
.+||-+.|.+|+.+-.++.|.+
T Consensus 2 ~~~i~~~d~~g~i~~~N~~~~~ 23 (96)
T 3a0s_A 2 ETAIITLSKDGRITEWNKKAEQ 23 (96)
T ss_dssp CCEEEEEETTSBEEEECHHHHH
T ss_pred CceEEEEcCCCCEeehhHHHHH
Confidence 4688999999999877766544
No 9
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=17.36 E-value=63 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=18.5
Q ss_pred hhcCcceecCCCceeeehHHHHH
Q psy16712 100 ITDGLPVYDANNNLIGNSQKAAV 122 (221)
Q Consensus 100 l~~GI~V~D~~G~~vG~S~~Aa~ 122 (221)
+.+||-+.|.+|+.+-.++.|.+
T Consensus 24 ~~~~i~~~d~~g~i~~~N~~~~~ 46 (118)
T 2w0n_A 24 IKEGVVAVDDRGEVTLINDAAQE 46 (118)
T ss_dssp CCCCCEEEBTTTBCCCBCHHHHH
T ss_pred ccccEEEECCCCcEeehhHHHHH
Confidence 45799999999999877776644
No 10
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=17.22 E-value=71 Score=24.45 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=17.7
Q ss_pred cceecCCCceeeehH-----HHHHHhhhHh
Q psy16712 104 LPVYDANNNLIGNSQ-----KAAVTGISMV 128 (221)
Q Consensus 104 I~V~D~~G~~vG~S~-----~Aa~~Ai~~t 128 (221)
-.+.+.||++||.|. .++.++|..+
T Consensus 68 F~Lka~NgqvIg~Se~Y~s~~~~~~gI~sV 97 (118)
T 2k49_A 68 FNLKAANHQIIGTSQMYSSTAARDNGIKSV 97 (118)
T ss_dssp EEEECTTCCEEEEBCCCSSHHHHHHHHHHH
T ss_pred EEEEcCCCcEEEEcCCcCCHHHHHHHHHHH
Confidence 346678999999664 6666666654
Done!