Query psy16712
Match_columns 221
No_of_seqs 115 out of 321
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 20:06:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16712.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16712hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b7ta1 d.50.1.1 (A:1-73) dsRN 36.3 6.7 0.00049 25.6 1.5 19 115-133 51-69 (73)
2 d2f1la1 b.41.1.4 (A:101-175) 1 34.6 7.4 0.00054 25.4 1.5 15 102-116 7-21 (75)
3 d1s6la1 a.4.5.79 (A:21-80) Alk 29.7 7.1 0.00051 25.3 0.7 11 106-116 44-54 (60)
4 d2k49a2 d.348.1.1 (A:1-58) Unc 28.9 18 0.0013 22.9 2.6 23 106-128 19-46 (58)
5 d3bida1 d.348.1.1 (A:1-56) Unc 28.3 19 0.0014 22.5 2.6 23 106-128 17-44 (56)
6 d2ouxa2 d.37.1.1 (A:136-262) M 28.1 17 0.0012 25.1 2.6 26 102-127 97-123 (127)
7 d2k7ia1 d.348.1.1 (A:1-62) Unc 22.3 23 0.0017 22.5 2.2 23 106-128 18-45 (62)
8 d1xj3a1 d.110.3.2 (A:154-259) 22.0 22 0.0016 22.1 2.1 21 102-122 1-21 (106)
9 d2yzqa1 d.37.1.1 (A:123-278) U 18.5 16 0.0012 25.6 0.8 21 94-115 29-49 (156)
10 d3duea1 d.98.2.1 (A:20-145) Pu 18.4 19 0.0014 25.4 1.2 18 99-116 106-124 (126)
No 1
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.30 E-value=6.7 Score=25.56 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.8
Q ss_pred eehHHHHHHhhhHhHhhhh
Q psy16712 115 GNSQKAAVTGISMVVVSRI 133 (221)
Q Consensus 115 G~S~~Aa~~Ai~~t~~SRi 133 (221)
|.||+.|++.-++-++=.+
T Consensus 51 G~SKK~Aeq~AA~~aL~~l 69 (73)
T d2b7ta1 51 GPTKKKAKLHAAEKALRSF 69 (73)
T ss_dssp ESSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 9999999999888776543
No 2
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.58 E-value=7.4 Score=25.42 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=13.3
Q ss_pred cCcceecCCCceeee
Q psy16712 102 DGLPVYDANNNLIGN 116 (221)
Q Consensus 102 ~GI~V~D~~G~~vG~ 116 (221)
-|.+|+|++|+.+|+
T Consensus 7 iG~~V~d~~g~~lG~ 21 (75)
T d2f1la1 7 EGLKVIDQGRQLLGV 21 (75)
T ss_dssp TTCEEEETTSCEEEE
T ss_pred CCCEEEeCCCCEEEE
Confidence 489999999999985
No 3
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=29.74 E-value=7.1 Score=25.33 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=9.3
Q ss_pred eecCCCceeee
Q psy16712 106 VYDANNNLIGN 116 (221)
Q Consensus 106 V~D~~G~~vG~ 116 (221)
-+|++|+++|.
T Consensus 44 EyD~~G~ivG~ 54 (60)
T d1s6la1 44 EYDKDGNIIGY 54 (60)
T ss_dssp CEETTTEECCC
T ss_pred eecCCCCEEee
Confidence 38999999985
No 4
>d2k49a2 d.348.1.1 (A:1-58) Uncharacterized protein SO3888 {Shewanella oneidensis [TaxId: 70863]}
Probab=28.86 E-value=18 Score=22.86 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=17.2
Q ss_pred eecCCCceee-----ehHHHHHHhhhHh
Q psy16712 106 VYDANNNLIG-----NSQKAAVTGISMV 128 (221)
Q Consensus 106 V~D~~G~~vG-----~S~~Aa~~Ai~~t 128 (221)
+.+.||++|+ .||.++.++|..|
T Consensus 19 Lka~NGevIa~Se~Y~sk~~a~~gI~sV 46 (58)
T d2k49a2 19 LKAGNGEVILTSELYTGKSGAMNGIESV 46 (58)
T ss_dssp EECSSSCEEEECCCBSSHHHHHHHHHHH
T ss_pred EEcCCCCEEEEcCCcCCHHHHHHHHHHH
Confidence 5678999997 4577888887654
No 5
>d3bida1 d.348.1.1 (A:1-56) Uncharacterized protein NMB1088 {Neisseria meningitidis [TaxId: 487]}
Probab=28.26 E-value=19 Score=22.54 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=16.8
Q ss_pred eecCCCceee-----ehHHHHHHhhhHh
Q psy16712 106 VYDANNNLIG-----NSQKAAVTGISMV 128 (221)
Q Consensus 106 V~D~~G~~vG-----~S~~Aa~~Ai~~t 128 (221)
+.+.||++++ .||.++.++|..|
T Consensus 17 Lka~Ng~vIa~Se~Y~sk~~a~~gI~sV 44 (56)
T d3bida1 17 LKAANHEIIAQGEGYTSKQNCQHAVDLL 44 (56)
T ss_dssp EECTTSCEEEECCCBSCHHHHHHHHHHH
T ss_pred EEeCCCCEEEecCCcCCHHHHHHHHHHH
Confidence 4578999997 4577888877654
No 6
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=28.12 E-value=17 Score=25.08 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=18.4
Q ss_pred cCcceecCCCceee-ehHHHHHHhhhH
Q psy16712 102 DGLPVYDANNNLIG-NSQKAAVTGISM 127 (221)
Q Consensus 102 ~GI~V~D~~G~~vG-~S~~Aa~~Ai~~ 127 (221)
.-++|.|++|+.+| .|..--.+++.|
T Consensus 97 ~~lPVVD~~g~lvGiIt~~Dil~~i~e 123 (127)
T d2ouxa2 97 LAVPVTDYDDHLLGIVTVDDIIDVIDD 123 (127)
T ss_dssp SEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred EEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence 36889999999999 455544454444
No 7
>d2k7ia1 d.348.1.1 (A:1-62) Uncharacterized protein Atu0232 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=22.34 E-value=23 Score=22.48 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=16.7
Q ss_pred eecCCCceee-----ehHHHHHHhhhHh
Q psy16712 106 VYDANNNLIG-----NSQKAAVTGISMV 128 (221)
Q Consensus 106 V~D~~G~~vG-----~S~~Aa~~Ai~~t 128 (221)
+.+.||++|+ .||.++.++|..|
T Consensus 18 L~a~Ng~iIa~Se~Y~sk~~a~~gI~sV 45 (62)
T d2k7ia1 18 FKASNGETMFSSEGYKAKASAIHAIESI 45 (62)
T ss_dssp ECCTTSCCCEEBCCSSSHHHHHHHHHHH
T ss_pred EEeCCCCEEEEcCCcCCHHHHHHHHHHH
Confidence 4578999987 4577788777654
No 8
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=21.96 E-value=22 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=17.2
Q ss_pred cCcceecCCCceeeehHHHHH
Q psy16712 102 DGLPVYDANNNLIGNSQKAAV 122 (221)
Q Consensus 102 ~GI~V~D~~G~~vG~S~~Aa~ 122 (221)
+||-+.|++|+.+=.++.|.+
T Consensus 1 dgi~~~D~~G~I~~~N~a~~~ 21 (106)
T d1xj3a1 1 DAMIVIDGHGIIQLFSTAAER 21 (106)
T ss_dssp CCEEEEETTSBEEEECHHHHH
T ss_pred CEEEEECCCCcEEEEcHHHHH
Confidence 589999999999877776654
No 9
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=18.54 E-value=16 Score=25.58 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.2
Q ss_pred cccchhhhcCcceecCCCceee
Q psy16712 94 FMRNKEITDGLPVYDANNNLIG 115 (221)
Q Consensus 94 ~mR~~El~~GI~V~D~~G~~vG 115 (221)
+||.+. .++++|.|++|+.+|
T Consensus 29 ~m~~~~-~~~lPVvd~~~~lvG 49 (156)
T d2yzqa1 29 ALLLSN-SMALPVVDSEGNLVG 49 (156)
T ss_dssp HHHTCS-SSEEEEECTTSCEEE
T ss_pred HHHHcC-CCEEEEEeCCCCcee
Confidence 355543 368999999999999
No 10
>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987 {Bacteroides vulgatus [TaxId: 821]}
Probab=18.44 E-value=19 Score=25.41 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=14.4
Q ss_pred hhhcCcce-ecCCCceeee
Q psy16712 99 EITDGLPV-YDANNNLIGN 116 (221)
Q Consensus 99 El~~GI~V-~D~~G~~vG~ 116 (221)
||.+|++| +|.+|+.++.
T Consensus 106 el~n~~el~fd~~G~~i~~ 124 (126)
T d3duea1 106 KLSNGWEIKFDMQFNVIDI 124 (126)
T ss_dssp EETTSCEEEEETTCCEEEE
T ss_pred EecCCeEEEECCCCCEEec
Confidence 56789988 7999998863
Done!