RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16712
         (221 letters)



>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 311

 Score = 25.1 bits (54), Expect = 7.5
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 190 TPIQISSLEPELQERAKKLNPPPTVGYYN 218
             I +S+L PEL +  + +   P+    +
Sbjct: 2   VHIDLSALNPELVQAVQHVVIGPSSLIVH 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 816,877
Number of extensions: 34844
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)