BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16713
(357 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q924A2|CIC_MOUSE Protein capicua homolog OS=Mus musculus GN=Cic PE=1 SV=2
Length = 2510
Score = 171 bits (434), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 83/93 (89%)
Query: 65 RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELAS 124
R KD IRRPMNAFMIFSKRHRA VHQ HPNQDNRTVSKILGEWWY+LGP+EKQKYH+LA
Sbjct: 1102 REKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAF 1161
Query: 125 EVKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
+VKEAHFKAHP+WKWC+KD++KSS+ + LG
Sbjct: 1162 QVKEAHFKAHPDWKWCNKDRKKSSSEAKPASLG 1194
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 46/50 (92%)
Query: 7 HKYKKGDIVTTPTGIRKKFNGKQWRRLCSKDGCSKESQRRGYCSRHLSLK 56
KYKKGD+V TP GIRKKFNGKQWRRLCS+DGC KESQRRGYCSRHLS++
Sbjct: 477 QKYKKGDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMR 526
>sp|Q96RK0|CIC_HUMAN Protein capicua homolog OS=Homo sapiens GN=CIC PE=1 SV=2
Length = 1608
Score = 171 bits (434), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 83/93 (89%)
Query: 65 RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELAS 124
R KD IRRPMNAFMIFSKRHRA VHQ HPNQDNRTVSKILGEWWY+LGP+EKQKYH+LA
Sbjct: 195 REKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAF 254
Query: 125 EVKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
+VKEAHFKAHP+WKWC+KD++KSS+ + LG
Sbjct: 255 QVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLG 287
>sp|Q9U1H0|CIC_DROME Putative transcription factor capicua OS=Drosophila melanogaster
GN=cic PE=1 SV=2
Length = 1832
Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
+IRRPMNAFMIFSK+HR VH+ HPNQDNRTVSKILGEWWY+L PE+K +YHELAS VK+
Sbjct: 489 KIRRPMNAFMIFSKKHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELASSVKD 548
Query: 129 AHFKAHPEWKWCSKDKRKSSTGSGR-GKLGSMDEGTGEG 166
AHFK HPEWKWCSKD+RKSST + G S GTG+
Sbjct: 549 AHFKLHPEWKWCSKDRRKSSTSTATPGGKASGAAGTGDA 587
>sp|Q8WY36|BBX_HUMAN HMG box transcription factor BBX OS=Homo sapiens GN=BBX PE=1 SV=1
Length = 941
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 53/72 (73%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
R RRPMNAF++F KRHR+ V Q HP DNR +KIL +WW L P+EKQKY ++A E K+
Sbjct: 79 RARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKD 138
Query: 129 AHFKAHPEWKWC 140
A KA+P +KWC
Sbjct: 139 AFMKANPGYKWC 150
>sp|Q8VBW5|BBX_MOUSE HMG box transcription factor BBX OS=Mus musculus GN=Bbx PE=1 SV=2
Length = 907
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 53/72 (73%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
R RRPMNAF++F KRHR+ V Q HP DNR +KIL +WW L P+EKQKY ++A E K+
Sbjct: 79 RARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKD 138
Query: 129 AHFKAHPEWKWC 140
A KA+P ++WC
Sbjct: 139 AFMKANPGYRWC 150
>sp|Q04891|SOX13_MOUSE Transcription factor SOX-13 OS=Mus musculus GN=Sox13 PE=2 SV=4
Length = 613
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%)
Query: 65 RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELAS 124
R+ I+RPMNAFM+++K R K+ Q P+ N ++SKILG W S+ +EKQ Y+E +
Sbjct: 411 RNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQA 470
Query: 125 EVKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
+ H + +P++K+ + KR R ++G
Sbjct: 471 RLSRQHLEKYPDYKYKPRPKRTCVVEGRRLRVG 503
>sp|Q9UN79|SOX13_HUMAN Transcription factor SOX-13 OS=Homo sapiens GN=SOX13 PE=1 SV=3
Length = 622
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%)
Query: 65 RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELAS 124
R+ I+RPMNAFM+++K R K+ Q P+ N ++SKILG W S+ +EKQ Y+E +
Sbjct: 419 RNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQA 478
Query: 125 EVKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
+ H + +P++K+ + KR R ++G
Sbjct: 479 RLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVG 511
>sp|Q5RCU4|SOX6_PONAB Transcription factor SOX-6 OS=Pongo abelii GN=SOX6 PE=2 SV=1
Length = 787
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S+ I+RPMNAFM+++K R K+ Q P+ N +SKILG W S+ +EKQ Y+E +
Sbjct: 576 SEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQAR 635
Query: 126 VKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
+ + H + +P +K+ + KR + ++G
Sbjct: 636 LSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIG 667
>sp|P40645|SOX6_MOUSE Transcription factor SOX-6 OS=Mus musculus GN=Sox6 PE=1 SV=2
Length = 827
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S+ I+RPMNAFM+++K R K+ Q P+ N +SKILG W S+ +EKQ Y+E +
Sbjct: 616 SEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQAR 675
Query: 126 VKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
+ + H + +P +K+ + KR + ++G
Sbjct: 676 LSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIG 707
>sp|P35712|SOX6_HUMAN Transcription factor SOX-6 OS=Homo sapiens GN=SOX6 PE=1 SV=3
Length = 828
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S+ I+RPMNAFM+++K R K+ Q P+ N +SKILG W S+ +EKQ Y+E +
Sbjct: 617 SEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQAR 676
Query: 126 VKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
+ + H + +P +K+ + KR + ++G
Sbjct: 677 LSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIG 708
>sp|Q28EW4|SOX13_XENTR Transcription factor Sox-13 OS=Xenopus tropicalis GN=sox13 PE=2
SV=1
Length = 566
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 70 IRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEA 129
I+RPMNAFM+++K R K+ Q P+ N ++SKILG W S+ EKQ Y+E + +
Sbjct: 378 IKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNAEKQPYYEEQARLSRQ 437
Query: 130 HFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
H + +P++K+ + KR R ++G
Sbjct: 438 HLERYPDYKYKPRPKRTCIVEGKRLRVG 465
>sp|P40657|SOX15_DROME Putative transcription factor SOX-15 OS=Drosophila melanogaster
GN=Sox15 PE=2 SV=2
Length = 784
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 30 WRRLCSKDGCSKESQRRGYCSRH------LSLKGAGSATGLRSKDRIRRPMNAFMIFSKR 83
W D C+ GY RH L + G+ + + RIRRPMNAFM+++K
Sbjct: 172 WSYDYKGDLCAPNC---GYLERHKPLPADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKI 228
Query: 84 HRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKD 143
R K+ +P+ N +SK+LG+ W SL P++++ Y E A ++ H HP +K+ +
Sbjct: 229 ERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRPRR 288
Query: 144 KRKS 147
+++S
Sbjct: 289 RKQS 292
>sp|B1H349|SOX6_XENTR Transcription factor Sox-6 OS=Xenopus tropicalis GN=sox6 PE=2 SV=1
Length = 777
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S+ I+RPMNAFM+++K R K+ Q P+ N +SKILG W ++ +EKQ Y+E +
Sbjct: 566 SEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQAR 625
Query: 126 VKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
+ + H + +P +K+ + KR + ++G
Sbjct: 626 LSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIG 657
>sp|P40649|SOX13_XENLA Transcription factor Sox-13 OS=Xenopus laevis GN=sox13 PE=2 SV=3
Length = 567
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVK 127
+ I+RPMNAFM+++K R K+ Q P+ N ++SKILG W S+ EKQ Y+E + +
Sbjct: 390 NHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNGEKQPYYEEQARLS 449
Query: 128 EAHFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
H + +P++K+ + KR R ++G
Sbjct: 450 RQHLERYPDYKYKPRPKRTCIVEGKRLRVG 479
>sp|P40647|SOX5_XENLA Transcription factor Sox-5 OS=Xenopus laevis GN=sox5 PE=2 SV=2
Length = 757
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%)
Query: 70 IRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEA 129
I+RPMNAFM+++K R K+ Q P+ N +SKILG W S+ EKQ Y+E + + +
Sbjct: 559 IKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQARLSKQ 618
Query: 130 HFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
H + +P++K+ + KR + ++G
Sbjct: 619 HLEKYPDYKYKPRPKRTCLVDGKKLRIG 646
>sp|Q04886|SOX8_MOUSE Transcription factor SOX-8 OS=Mus musculus GN=Sox8 PE=2 SV=2
Length = 464
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 34 CSKDGCSKESQRRGYCSRHLSLKGAGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHP 93
C +D S+ + + + ++G G T L++K ++RPMNAFM++++ R K+ +P
Sbjct: 64 CIRDAVSQVLKGYDWSLVPMPVRGGGGGT-LKAKPHVKRPMNAFMVWAQAARRKLADQYP 122
Query: 94 NQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKRKSSTGSGR 153
+ N +SK LG+ W L EK+ + E A ++ H K HP++K+ + +R+ S +GR
Sbjct: 123 HLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKY--QPRRRKSVKTGR 180
Query: 154 GKLGSMDEGTGEGFMP 169
D GT G P
Sbjct: 181 SD---SDSGTELGHHP 193
>sp|Q90ZH8|SX18A_XENLA Transcription factor Sox-18A OS=Xenopus laevis GN=sox18-a PE=1 SV=1
Length = 363
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 31/168 (18%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W +L EK+ + E A ++
Sbjct: 67 RIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGQSWKNLTSVEKRPFVEEAERLRV 126
Query: 129 AHFKAHPEWKWCSKDKRKSSTGSGRGKLGSMD-------EGTGEGFMPDDLEHFENSLEM 181
H + HP +K+ + K+++ KL MD EG G +L HF N
Sbjct: 127 QHLQDHPNYKYRPRRKKQAK------KLKRMDPSPLLRNEGFTRGQPMVNLSHFRN---- 176
Query: 182 VTSSNETTVQYLLHPTGRLSNIYSTGFQIPISSESLGNVKQPTTPTVI 229
LHP G + S G +P S +V +P+ P
Sbjct: 177 ------------LHPLGGSGELESYG--LPTPEMSPLDVLEPSEPAFF 210
>sp|P35710|SOX5_MOUSE Transcription factor SOX-5 OS=Mus musculus GN=Sox5 PE=1 SV=2
Length = 763
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 37 DGCSKESQRRGYCSRHLSLKGAGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQD 96
DG + S+ R Y +G GS ++ I+RPMNAFM+++K R K+ Q P+
Sbjct: 532 DGSAGVSESRIYRES----RGRGS-----NEPHIKRPMNAFMVWAKDERRKILQAFPDMH 582
Query: 97 NRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKRKSSTGSGRGKL 156
N +SKILG W ++ EKQ Y+E + + + H + +P++K+ + KR + ++
Sbjct: 583 NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRI 642
Query: 157 G 157
G
Sbjct: 643 G 643
>sp|P35711|SOX5_HUMAN Transcription factor SOX-5 OS=Homo sapiens GN=SOX5 PE=1 SV=3
Length = 763
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 37 DGCSKESQRRGYCSRHLSLKGAGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQD 96
DG + S+ R Y +G GS ++ I+RPMNAFM+++K R K+ Q P+
Sbjct: 532 DGSAGVSESRIYRES----RGRGS-----NEPHIKRPMNAFMVWAKDERRKILQAFPDMH 582
Query: 97 NRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKRKSSTGSGRGKL 156
N +SKILG W ++ EKQ Y+E + + + H + +P++K+ + KR + ++
Sbjct: 583 NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRI 642
Query: 157 G 157
G
Sbjct: 643 G 643
>sp|B3DM43|SOX5_XENTR Transcription factor Sox-5 OS=Xenopus tropicalis GN=sox5 PE=2 SV=1
Length = 753
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 70 IRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEA 129
I+RPMNAFM+++K R K+ Q P+ N +SKILG W ++ EKQ Y+E + + +
Sbjct: 557 IKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQ 616
Query: 130 HFKAHPEWKWCSKDKRKSSTGSGRGKLG 157
H + +P++K+ + KR + ++G
Sbjct: 617 HLEKYPDYKYKPRPKRTCLVDGKKLRIG 644
>sp|O60248|SOX15_HUMAN Protein SOX-15 OS=Homo sapiens GN=SOX15 PE=1 SV=1
Length = 233
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 8/120 (6%)
Query: 56 KGAGS--ATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGP 113
+GAGS A G ++++RPMNAFM++S R ++ Q +P N +SK LG W L
Sbjct: 33 EGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDE 92
Query: 114 EEKQKYHELASEVKEAHFKAHPEWKWCSKDKRKSS------TGSGRGKLGSMDEGTGEGF 167
+EK+ + E A ++ H + +P++K+ + K KSS G GRG L S G G+
Sbjct: 93 DEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGY 152
>sp|Q6P0E1|SOX2_DANRE Transcription factor Sox-2 OS=Danio rerio GN=sox2 PE=2 SV=1
Length = 315
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S DRI+RPMNAFM++S+ R K+ Q +P N +SK LG W L EK+ + + A
Sbjct: 34 SPDRIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSESEKRPFIDEAKR 93
Query: 126 VKEAHFKAHPEWKWCSKDKRKS 147
++ H K HP++K+ + K K+
Sbjct: 94 LRALHMKEHPDYKYRPRRKTKT 115
>sp|Q6VVD7|SOX8_XENLA Transcription factor Sox-8 OS=Xenopus laevis GN=sox8 PE=2 SV=1
Length = 459
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 34 CSKDGCSKESQRRGYCSRHLSLKGAGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHP 93
C +D S+ + + + ++G+G GL++K ++RPMNAFM++++ R K+ +P
Sbjct: 65 CIRDAVSQVLKGYDWSLVPMPVRGSG---GLKAKPHVKRPMNAFMVWAQAARRKLADQYP 121
Query: 94 NQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKRKSSTGSGR 153
+ N +SK LG+ W L EK+ + E A ++ H K HP++K+ + +R+ S +G+
Sbjct: 122 HLHNAELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKY--QPRRRKSVKAGQ 179
>sp|P48433|SOX3_CHICK Transcription factor SOX-3 OS=Gallus gallus GN=SOX3 PE=2 SV=1
Length = 312
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 46 RGYCSRHLSLK--GAGSATGLRS-KDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSK 102
RG +R + K GA +A G RS +DR++RPMNAFM++S+ R K+ Q +P N +SK
Sbjct: 19 RGEPARAATAKVGGAAAADGCRSDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISK 78
Query: 103 ILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139
LG W L EK+ + + A ++ H K +P++K+
Sbjct: 79 RLGADWKLLSDAEKRPFIDEAKRLRAVHMKEYPDYKY 115
>sp|Q90ZH7|SX18B_XENLA Transcription factor Sox-18B OS=Xenopus laevis GN=sox18-b PE=1 SV=1
Length = 361
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 31/168 (18%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W +L EK+ + E A ++
Sbjct: 65 RIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGQSWKNLTSAEKRPFVEEAERLRV 124
Query: 129 AHFKAHPEWKWCSKDKRKSSTGSGRGKLGSMD-------EGTGEGFMPDDLEHFENSLEM 181
H + HP +K+ + K+++ KL MD EG G +L HF
Sbjct: 125 QHLQDHPNYKYRPRRKKQAK------KLKRMDPSHHLRNEGYTGGQPMVNLSHFRE---- 174
Query: 182 VTSSNETTVQYLLHPTGRLSNIYSTGFQIPISSESLGNVKQPTTPTVI 229
LHP G + S G +P S +V +P+ P
Sbjct: 175 ------------LHPLGGSGELESYG--LPTPEMSPLDVLEPSEPAFF 208
>sp|P48430|SOX2_CHICK Transcription factor SOX-2 OS=Gallus gallus GN=SOX2 PE=1 SV=1
Length = 315
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S DR++RPMNAFM++S+ R K+ Q +P N +SK LG W L EK+ + + A
Sbjct: 35 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKR 94
Query: 126 VKEAHFKAHPEWKWCSKDKRKS 147
++ H K HP++K+ + K K+
Sbjct: 95 LRALHMKEHPDYKYRPRRKTKT 116
>sp|Q8R316|HBP1_MOUSE HMG box-containing protein 1 OS=Mus musculus GN=Hbp1 PE=1 SV=1
Length = 516
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 20 GIRKKFNGKQWRRLCSKDGCSKESQRRGYCSRHLSLKGAGSATGLRSKDRIRRPMNAFMI 79
G ++F+G ++ + C G S+ S Y ++ + +G+ + S ++ +RPMNAFM+
Sbjct: 388 GTGQEFSGSEFSKSCGSPGSSQLSSSSLY-AKAVKSHSSGTVSA-TSPNKCKRPMNAFML 445
Query: 80 FSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139
F+K++R + Q++P +DNR +S ILG+ W + EE++ Y A + E + +P+
Sbjct: 446 FAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPD--- 502
Query: 140 CSKDKRKSS 148
C K KR +S
Sbjct: 503 CWKRKRTNS 511
>sp|Q5R7I3|HBP1_PONAB HMG box-containing protein 1 OS=Pongo abelii GN=HBP1 PE=2 SV=2
Length = 514
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 57 GAGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEK 116
G SAT S ++ +RPMNAFM+F+K++R + Q++P +DNR +S ILG+ W + EE+
Sbjct: 424 GTVSAT---SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER 480
Query: 117 QKYHELASEVKEAHFKAHPEWKWCSKDKRKSST 149
+ Y A + E + +P+ C K KR +S+
Sbjct: 481 RMYTLEAKALAEEQKRLNPD---CWKRKRTNSS 510
>sp|B3DLD3|SOX18_XENTR Transcription factor Sox-18 OS=Xenopus tropicalis GN=sox18 PE=2
SV=1
Length = 362
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 30/167 (17%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W +L EK+ + E A ++
Sbjct: 67 RIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGQSWKNLSSAEKRPFVEEAERLRV 126
Query: 129 AHFKAHPEWKWCSKDKRKSSTGSGRGKLGSMDEGT---GEGF---MPDDLEHFENSLEMV 182
H + HP +K+ + K+++ KL +D EG+ +L HF +
Sbjct: 127 QHLQDHPNYKYRPRRKKQAK------KLKRVDPSPLLRNEGYRGQAMANLSHFRD----- 175
Query: 183 TSSNETTVQYLLHPTGRLSNIYSTGFQIPISSESLGNVKQPTTPTVI 229
LHP G ++ S G +P S +V +P+ P
Sbjct: 176 -----------LHPLGGSGDLESYG--LPTPEMSPLDVVEPSEPAFF 209
>sp|O60381|HBP1_HUMAN HMG box-containing protein 1 OS=Homo sapiens GN=HBP1 PE=1 SV=2
Length = 514
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Query: 57 GAGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEK 116
G SAT S ++ +RPMNAFM+F+K++R + Q++P +DNR +S ILG+ W + EE+
Sbjct: 424 GTVSAT---SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER 480
Query: 117 QKYHELASEVKEAHFKAHPEWKWCSKDKRKSS 148
+ Y A + E + +P+ C K KR +S
Sbjct: 481 RMYTLEAKALAEEQKRLNPD---CWKRKRTNS 509
>sp|P54231|SOX2_SHEEP Transcription factor SOX-2 OS=Ovis aries GN=SOX2 PE=3 SV=1
Length = 320
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S DR++RPMNAFM++S+ R K+ Q +P N +SK LG W L EK+ + + A
Sbjct: 40 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 99
Query: 126 VKEAHFKAHPEWKWCSKDKRKS 147
++ H K HP++K+ + K K+
Sbjct: 100 LRALHMKEHPDYKYRPRRKTKT 121
>sp|P48431|SOX2_HUMAN Transcription factor SOX-2 OS=Homo sapiens GN=SOX2 PE=1 SV=1
Length = 317
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S DR++RPMNAFM++S+ R K+ Q +P N +SK LG W L EK+ + + A
Sbjct: 37 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 96
Query: 126 VKEAHFKAHPEWKWCSKDKRKS 147
++ H K HP++K+ + K K+
Sbjct: 97 LRALHMKEHPDYKYRPRRKTKT 118
>sp|Q2KJ34|HBP1_BOVIN HMG box-containing protein 1 OS=Bos taurus GN=HBP1 PE=2 SV=1
Length = 512
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Query: 57 GAGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEK 116
G SAT S ++ +RPMNAFM+F+K++R + Q++P +DNR +S ILG+ W + EE+
Sbjct: 422 GTVSAT---SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER 478
Query: 117 QKYHELASEVKEAHFKAHPEWKWCSKDKRKSS 148
+ Y A + E + +P+ C K KR +S
Sbjct: 479 RMYTLEAKALAEEQKRLNPD---CWKRKRTNS 507
>sp|Q62661|HBP1_RAT HMG box-containing protein 1 OS=Rattus norvegicus GN=Hbp1 PE=1 SV=2
Length = 513
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 20 GIRKKFNGKQWRRLCSKDGCSKESQRRGYCSRHLSLKGAGSATGLRSKDRIRRPMNAFMI 79
G ++F G ++ + C G S+ S Y ++ + +G+ + S ++ +RPMNAFM+
Sbjct: 385 GTGQEFAGSEFSKSCGSPGSSQLSSSSLY-TKAVKSHSSGTVSA-TSPNKCKRPMNAFML 442
Query: 80 FSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139
F+K++R + Q++P +DNR +S ILG+ W + EE++ Y A + E + +P+
Sbjct: 443 FAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPD--- 499
Query: 140 CSKDKRKSS 148
C K KR +S
Sbjct: 500 CWKRKRTNS 508
>sp|Q3KQ35|S17AA_XENLA Transcription factor Sox-17-alpha-A OS=Xenopus laevis GN=sox17a-a
PE=1 SV=1
Length = 380
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 58 AGSATGL-RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEK 116
AGSA +++ RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W SL EK
Sbjct: 48 AGSANSRSKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLAEK 107
Query: 117 QKYHELASEVKEAHFKAHPEWKW 139
+ + E A ++ H + HP +K+
Sbjct: 108 RPFVEEAERLRVQHMQDHPNYKY 130
>sp|P48432|SOX2_MOUSE Transcription factor SOX-2 OS=Mus musculus GN=Sox2 PE=1 SV=2
Length = 319
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S DR++RPMNAFM++S+ R K+ Q +P N +SK LG W L EK+ + + A
Sbjct: 39 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 98
Query: 126 VKEAHFKAHPEWKWCSKDKRKS 147
++ H K HP++K+ + K K+
Sbjct: 99 LRALHMKEHPDYKYRPRRKTKT 120
>sp|Q90ZH9|S17AB_XENLA Transcription factor Sox-17-alpha-B OS=Xenopus laevis GN=sox17a-b
PE=1 SV=1
Length = 377
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 19/121 (15%)
Query: 38 GCSKESQRRGYCSRHLSLKGAGSA------TGL-------------RSKDRIRRPMNAFM 78
G + Q +G CS + + G G T L +++ RIRRPMNAFM
Sbjct: 7 GYGSDDQNQGKCSVPIMMSGLGQCQWSEPMTSLGEGKLKSDANSRSKAEGRIRRPMNAFM 66
Query: 79 IFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138
+++K R ++ Q +P+ N +SK+LG+ W +L EK+ + E A ++ H + HP +K
Sbjct: 67 VWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSLAEKRPFVEEAERLRVQHMQDHPNYK 126
Query: 139 W 139
+
Sbjct: 127 Y 127
>sp|Q8AWH3|SX17A_XENTR Transcription factor Sox-17-alpha OS=Xenopus tropicalis GN=sox17a
PE=2 SV=1
Length = 383
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 58 AGSATGL-RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEK 116
AGSA +++ RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W +L EK
Sbjct: 48 AGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEK 107
Query: 117 QKYHELASEVKEAHFKAHPEWKWCSKDKRKSSTGSGRGKLGSM 159
+ + E A ++ H + HP +K+ + +RK R G M
Sbjct: 108 RPFVEEAERLRVQHMQDHPNYKYRPR-RRKQVKRMKRADTGFM 149
>sp|P43680|SOX18_MOUSE Transcription factor SOX-18 OS=Mus musculus GN=Sox18 PE=1 SV=3
Length = 377
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W L EK+ + E A ++
Sbjct: 78 RIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRV 137
Query: 129 AHFKAHPEWKWCSKDKRKS 147
H + HP +K+ + K+++
Sbjct: 138 QHLRDHPNYKYRPRRKKQA 156
>sp|P35713|SOX18_HUMAN Transcription factor SOX-18 OS=Homo sapiens GN=SOX18 PE=1 SV=2
Length = 384
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W L EK+ + E A ++
Sbjct: 84 RIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRV 143
Query: 129 AHFKAHPEWKWCSKDKRKS 147
H + HP +K+ + K+++
Sbjct: 144 QHLRDHPNYKYRPRRKKQA 162
>sp|Q61473|SOX17_MOUSE Transcription factor SOX-17 OS=Mus musculus GN=Sox17 PE=1 SV=1
Length = 419
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 54/82 (65%)
Query: 58 AGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQ 117
AG++ +++ RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W +L EK+
Sbjct: 56 AGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKR 115
Query: 118 KYHELASEVKEAHFKAHPEWKW 139
+ E A ++ H + HP +K+
Sbjct: 116 PFVEEAERLRVQHMQDHPNYKY 137
>sp|O42569|SOX2_XENLA Transcription factor Sox-2 OS=Xenopus laevis GN=sox2 PE=2 SV=1
Length = 311
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVK 127
DR++RPMNAFM++S+ R K+ Q +P N +SK LG W L EK+ + + A ++
Sbjct: 35 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLR 94
Query: 128 EAHFKAHPEWKWCSKDKRKS 147
H K HP++K+ + K K+
Sbjct: 95 ALHMKEHPDYKYRPRRKTKT 114
>sp|Q6NVN0|SOX2_XENTR Transcription factor Sox-2 OS=Xenopus tropicalis GN=sox2 PE=2 SV=1
Length = 311
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVK 127
DR++RPMNAFM++S+ R K+ Q +P N +SK LG W L EK+ + + A ++
Sbjct: 35 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLR 94
Query: 128 EAHFKAHPEWKWCSKDKRKS 147
H K HP++K+ + K K+
Sbjct: 95 ALHMKEHPDYKYRPRRKTKT 114
>sp|P57074|SOX8_CHICK Transcription factor SOX-8 OS=Gallus gallus GN=SOX8 PE=2 SV=1
Length = 470
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 34 CSKDGCSKESQRRGYCSRHLSLKGAGSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHP 93
C +D S+ + + + ++G GS L++K ++RPMNAFM++++ R K+ +P
Sbjct: 76 CIRDAVSQVLKGYDWSLVPMPVRGNGS---LKAKPHVKRPMNAFMVWAQAARRKLADQYP 132
Query: 94 NQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKRKSSTGSGR 153
+ N +SK LG+ W L EK+ + E A ++ H K HP++K+ + +R+ S +G+
Sbjct: 133 HLHNAELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKY--QPRRRKSVKAGQ 190
>sp|Q8AWH2|S17B1_XENTR Transcription factor Sox-17-beta.1 OS=Xenopus tropicalis
GN=sox17b.1 PE=2 SV=1
Length = 376
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 56 KGAGSATGL-RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPE 114
K AGSA +++ RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W SL
Sbjct: 43 KEAGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLA 102
Query: 115 EKQKYHELASEVKEAHFKAHPEWKWCSKDKRK 146
K+ + E A ++ H + +P++K+ + K++
Sbjct: 103 SKRPFVEEAERLRVQHIQDYPDYKYRPRRKKQ 134
>sp|Q6F2F0|S17B3_XENTR Transcription factor Sox-17-beta.3 OS=Xenopus tropicalis
GN=sox17b.3 PE=3 SV=2
Length = 376
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 56 KGAGSATGL-RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPE 114
K AGSA +++ RIRRPMNAFM+++K R ++ Q +P+ N +SK+LG+ W SL
Sbjct: 43 KEAGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLA 102
Query: 115 EKQKYHELASEVKEAHFKAHPEWKWCSKDKRK 146
K+ + E A ++ H + +P++K+ + K++
Sbjct: 103 SKRPFVEEAERLRVQHIQDYPDYKYRPRRKKQ 134
>sp|O42342|SOX7_XENLA Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1
Length = 362
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 53/81 (65%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S+ RIRRPMNAFM+++K R ++ +P+ N +SK+LG+ W +L P +K+ Y E A
Sbjct: 38 SETRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALSPAQKRPYVEEAER 97
Query: 126 VKEAHFKAHPEWKWCSKDKRK 146
++ H + +P +K+ + K++
Sbjct: 98 LRVQHMQDYPNYKYRPRRKKQ 118
>sp|P43267|SOX15_MOUSE Protein SOX-15 OS=Mus musculus GN=Sox15 PE=2 SV=3
Length = 231
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVK 127
++++RPMNAFM++S R ++ Q +P N +SK LG W LG EEK+ + E A ++
Sbjct: 45 EKVKRPMNAFMVWSSVQRRQMAQQNPKMHNSEISKRLGAQWKLLGDEEKRPFVEEAKRLR 104
Query: 128 EAHFKAHPEWKWCSKDKRK-SSTGS 151
H + +P++K+ + K K SSTGS
Sbjct: 105 ARHLRDYPDYKYRPRRKSKNSSTGS 129
>sp|Q6EJB7|SOX3_DANRE Transcription factor Sox-3 OS=Danio rerio GN=sox3 PE=1 SV=1
Length = 300
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 59 GSATGLRS-----KDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGP 113
GS TG ++ +DR++RPMNAFM++S+ R K+ Q +P N +SK LG W L
Sbjct: 19 GSVTGGKNNSANDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLTD 78
Query: 114 EEKQKYHELASEVKEAHFKAHPEWKW 139
EK+ + + A ++ H K HP++K+
Sbjct: 79 AEKRPFIDEAKRLRAMHMKEHPDYKY 104
>sp|Q2PG84|SOX1_XENLA Transcription factor Sox-1 OS=Xenopus laevis GN=sox1 PE=2 SV=1
Length = 393
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S+DR++RPMNAFM++S+ R K+ Q +P N +SK LG W + EK+ + + A
Sbjct: 30 SQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKR 89
Query: 126 VKEAHFKAHPEWKW 139
++ H K HP++K+
Sbjct: 90 LRALHMKEHPDYKY 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,147,350
Number of Sequences: 539616
Number of extensions: 6305919
Number of successful extensions: 66557
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 434
Number of HSP's that attempted gapping in prelim test: 26369
Number of HSP's gapped (non-prelim): 14394
length of query: 357
length of database: 191,569,459
effective HSP length: 119
effective length of query: 238
effective length of database: 127,355,155
effective search space: 30310526890
effective search space used: 30310526890
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)