Query psy16713
Match_columns 357
No_of_seqs 333 out of 1239
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 20:07:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0527|consensus 99.9 3.1E-25 6.8E-30 217.9 9.1 91 61-151 54-144 (331)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 1E-23 2.2E-28 165.7 10.1 76 69-144 1-76 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 5.2E-22 1.1E-26 154.3 9.8 72 69-140 1-72 (72)
4 PTZ00199 high mobility group p 99.8 3.7E-20 7.9E-25 151.9 9.5 79 60-138 13-93 (94)
5 PF00505 HMG_box: HMG (high mo 99.8 1E-18 2.2E-23 132.8 6.8 69 70-138 1-69 (69)
6 smart00398 HMG high mobility g 99.7 8.7E-18 1.9E-22 126.9 9.0 70 69-138 1-70 (70)
7 cd01390 HMGB-UBF_HMG-box HMGB- 99.7 2E-17 4.4E-22 124.4 9.0 65 70-134 1-65 (66)
8 cd00084 HMG-box High Mobility 99.7 1.5E-16 3.3E-21 118.8 9.0 66 70-135 1-66 (66)
9 PF09011 HMG_box_2: HMG-box do 99.7 2.9E-16 6.2E-21 122.4 7.5 72 67-138 1-73 (73)
10 KOG0528|consensus 99.6 1.8E-16 3.9E-21 160.5 3.2 93 63-155 319-411 (511)
11 KOG0381|consensus 99.6 4.2E-15 9E-20 120.5 8.8 74 66-139 17-93 (96)
12 COG5648 NHP6B Chromatin-associ 99.6 2.3E-15 4.9E-20 139.3 7.2 78 61-138 62-139 (211)
13 KOG3248|consensus 99.4 1.1E-13 2.4E-18 135.4 7.0 79 64-142 186-264 (421)
14 KOG0526|consensus 99.4 2.3E-13 5E-18 139.5 8.0 76 59-138 525-600 (615)
15 KOG4715|consensus 98.9 2.1E-09 4.5E-14 105.1 6.4 80 63-142 58-137 (410)
16 KOG2746|consensus 98.9 2.2E-09 4.8E-14 113.0 5.6 83 58-142 170-254 (683)
17 COG5648 NHP6B Chromatin-associ 98.9 1.1E-09 2.3E-14 101.9 2.6 117 11-136 86-210 (211)
18 PF14887 HMG_box_5: HMG (high 97.3 0.00086 1.9E-08 54.1 7.3 72 69-141 3-74 (85)
19 PF04690 YABBY: YABBY protein; 96.2 0.0097 2.1E-07 54.5 5.6 49 64-112 116-164 (170)
20 PF06382 DUF1074: Protein of u 96.0 0.012 2.7E-07 54.1 5.5 50 74-127 83-132 (183)
21 PF04769 MAT_Alpha1: Mating-ty 95.1 0.047 1E-06 51.2 6.0 57 62-124 36-92 (201)
22 PF08073 CHDNT: CHDNT (NUC034) 93.1 0.18 3.9E-06 38.3 4.4 39 74-112 13-51 (55)
23 KOG0527|consensus 92.0 0.079 1.7E-06 53.2 1.7 39 20-58 91-133 (331)
24 PTZ00199 high mobility group p 89.4 0.045 9.7E-07 45.0 -2.2 35 21-55 54-92 (94)
25 cd01389 MATA_HMG-box MATA_HMG- 88.7 0.09 1.9E-06 41.1 -0.9 40 18-57 28-71 (77)
26 cd01388 SOX-TCF_HMG-box SOX-TC 88.5 0.075 1.6E-06 41.1 -1.5 36 18-53 28-67 (72)
27 cd01390 HMGB-UBF_HMG-box HMGB- 86.1 0.12 2.6E-06 38.3 -1.4 26 19-44 28-53 (66)
28 PF06244 DUF1014: Protein of u 83.9 1.9 4.1E-05 37.7 4.7 49 65-113 67-116 (122)
29 KOG0526|consensus 82.7 0.62 1.3E-05 49.6 1.4 38 20-59 562-603 (615)
30 PF09011 HMG_box_2: HMG-box do 81.9 0.11 2.4E-06 40.2 -3.4 35 18-52 31-69 (73)
31 smart00398 HMG high mobility g 78.9 0.3 6.5E-06 36.2 -1.8 26 19-44 29-54 (70)
32 TIGR03481 HpnM hopanoid biosyn 74.1 5.2 0.00011 37.2 4.6 47 93-139 62-110 (198)
33 PRK15117 ABC transporter perip 68.6 8.8 0.00019 36.0 4.9 47 93-139 66-114 (211)
34 PF05494 Tol_Tol_Ttg2: Toluene 64.3 8.1 0.00018 34.4 3.6 47 93-139 36-84 (170)
35 cd00084 HMG-box High Mobility 64.0 1.8 3.8E-05 31.6 -0.6 26 19-44 28-53 (66)
36 PF00505 HMG_box: HMG (high mo 63.3 1.1 2.5E-05 33.4 -1.8 26 19-44 28-53 (69)
37 KOG0381|consensus 56.8 1.5 3.3E-05 35.2 -2.2 32 22-53 53-88 (96)
38 KOG0528|consensus 50.8 7.4 0.00016 41.1 1.2 32 22-53 356-387 (511)
39 KOG3223|consensus 40.3 35 0.00076 32.4 3.7 48 66-113 160-208 (221)
40 PF12881 NUT_N: NUT protein N 38.1 72 0.0016 32.3 5.7 53 75-127 230-282 (328)
41 KOG3248|consensus 37.2 7.6 0.00016 39.6 -1.2 28 19-46 219-247 (421)
42 KOG4715|consensus 33.9 20 0.00044 36.3 1.2 36 22-57 95-134 (410)
43 COG2854 Ttg2D ABC-type transpo 25.0 1.1E+02 0.0024 29.1 4.4 53 93-145 68-122 (202)
44 PF01352 KRAB: KRAB box; Inte 24.5 69 0.0015 22.7 2.3 29 96-124 2-31 (41)
45 PF05388 Carbpep_Y_N: Carboxyp 20.9 2.6E+02 0.0056 24.1 5.5 29 97-125 45-73 (113)
No 1
>KOG0527|consensus
Probab=99.92 E-value=3.1e-25 Score=217.93 Aligned_cols=91 Identities=35% Similarity=0.606 Sum_probs=85.6
Q ss_pred CCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 61 ATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 61 ~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
...++..++|||||||||+|++..|.+|..+||+|+|.||||+||.+||.|+++||.+|+++|+++|.+|+++||||||+
T Consensus 54 ~~~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYR 133 (331)
T KOG0527|consen 54 MKDKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYR 133 (331)
T ss_pred ccCCCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q psy16713 141 SKDKRKSSTGS 151 (357)
Q Consensus 141 PrkKkk~~k~~ 151 (357)
||||+|.....
T Consensus 134 PRRKkk~~~~~ 144 (331)
T KOG0527|consen 134 PRRKKKKRPKL 144 (331)
T ss_pred ccccccccccc
Confidence 99887766554
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.90 E-value=1e-23 Score=165.73 Aligned_cols=76 Identities=36% Similarity=0.685 Sum_probs=74.2
Q ss_pred CCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCCC
Q psy16713 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDK 144 (357)
Q Consensus 69 ~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~PrkK 144 (357)
+||||+|||||||++.|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|+++||+|+|+|+++
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p~~~ 76 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPRKS 76 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.87 E-value=5.2e-22 Score=154.35 Aligned_cols=72 Identities=57% Similarity=0.924 Sum_probs=70.8
Q ss_pred CCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 69 ~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
++|||+|||||||+++|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|.+++|+|+|+
T Consensus 1 ~iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y~ 72 (72)
T cd01388 1 HIKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72 (72)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999996
No 4
>PTZ00199 high mobility group protein; Provisional
Probab=99.82 E-value=3.7e-20 Score=151.95 Aligned_cols=79 Identities=29% Similarity=0.457 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCC--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccC
Q psy16713 60 SATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQD--NRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEW 137 (357)
Q Consensus 60 ~~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls--~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~Y 137 (357)
..++++|++.||||+|||||||.++|..|+.+||+++ +.+|+++||++|+.|++++|.+|+++|+.++++|..++..|
T Consensus 13 ~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~Y 92 (94)
T PTZ00199 13 NKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEY 92 (94)
T ss_pred cCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999987 89999999999999999999999999999999999999998
Q ss_pred c
Q psy16713 138 K 138 (357)
Q Consensus 138 K 138 (357)
+
T Consensus 93 ~ 93 (94)
T PTZ00199 93 A 93 (94)
T ss_pred h
Confidence 5
No 5
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.76 E-value=1e-18 Score=132.82 Aligned_cols=69 Identities=46% Similarity=0.714 Sum_probs=65.8
Q ss_pred CCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 70 IRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 70 PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
||||+|||||||.+.+..|+.+||++++.+|+++||++|++|++++|++|.++|++++++|.+++++|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999999999999999985
No 6
>smart00398 HMG high mobility group.
Probab=99.74 E-value=8.7e-18 Score=126.88 Aligned_cols=70 Identities=44% Similarity=0.689 Sum_probs=68.4
Q ss_pred CCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 69 ~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
+||||+||||||+.++|..++.+||++++.+|+++||++|+.|++++|++|.++|+.++++|.++++.|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999985
No 7
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.72 E-value=2e-17 Score=124.37 Aligned_cols=65 Identities=40% Similarity=0.642 Sum_probs=63.8
Q ss_pred CCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHc
Q psy16713 70 IRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAH 134 (357)
Q Consensus 70 PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~ 134 (357)
||||+||||+|++++|..++.+||++++.+|+++||++|+.|++++|++|.++|+.++++|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999886
No 8
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.68 E-value=1.5e-16 Score=118.77 Aligned_cols=66 Identities=45% Similarity=0.700 Sum_probs=64.3
Q ss_pred CCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Q psy16713 70 IRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHP 135 (357)
Q Consensus 70 PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p 135 (357)
||||+||||+|+.+.|..++.++|+++..+|+++||.+|+.|++++|.+|.++|+.++.+|.++++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~~ 66 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEMP 66 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999999999999999999999999999999875
No 9
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.65 E-value=2.9e-16 Score=122.42 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=63.4
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHhh-CCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 67 KDRIRRPMNAFMIFSKRHRAKVHQI-HPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 67 p~~PKRP~nAFmLF~~e~R~~ik~e-~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
|++||||+|||+||+.+++..++.. .+...+.||++.||+.|++||++||.+|+++|+.++++|..++..|.
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999998 78889999999999999999999999999999999999999998773
No 10
>KOG0528|consensus
Probab=99.61 E-value=1.8e-16 Score=160.52 Aligned_cols=93 Identities=32% Similarity=0.599 Sum_probs=84.1
Q ss_pred CCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcC
Q psy16713 63 GLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSK 142 (357)
Q Consensus 63 kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~Pr 142 (357)
+...+.++||||||||+|.++.|.+|...+|+|++..|+|+||..|+.|+..||++|.++-+++-..|.+.||+|||+||
T Consensus 319 ~~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPR 398 (511)
T KOG0528|consen 319 RASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPR 398 (511)
T ss_pred cCCCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q psy16713 143 DKRKSSTGSGRGK 155 (357)
Q Consensus 143 kKkk~~k~~~~~k 155 (357)
.||-.....++.+
T Consensus 399 PKRTCvvdGKklR 411 (511)
T KOG0528|consen 399 PKRTCVVDGKKLR 411 (511)
T ss_pred CCceeeecCceee
Confidence 8886655444433
No 11
>KOG0381|consensus
Probab=99.59 E-value=4.2e-15 Score=120.47 Aligned_cols=74 Identities=39% Similarity=0.594 Sum_probs=70.4
Q ss_pred CC--CCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcc-cCcc
Q psy16713 66 SK--DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHP-EWKW 139 (357)
Q Consensus 66 dp--~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p-~YKy 139 (357)
++ +.||||++|||+|+.+.|..++.+||++++.+|+++||++|++|++++|.+|+..|..++++|..++. .|+-
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~ 93 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKA 93 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55 59999999999999999999999999999999999999999999999999999999999999999999 7653
No 12
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.58 E-value=2.3e-15 Score=139.26 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=75.0
Q ss_pred CCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 61 ATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 61 ~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
.+++++|+.||||++|||+|+.+.|++|+.++|++.+.+|+++||++|++|+++||++|..+|..++++|..+...|.
T Consensus 62 ~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~ 139 (211)
T COG5648 62 VRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYN 139 (211)
T ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhh
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999999886
No 13
>KOG3248|consensus
Probab=99.45 E-value=1.1e-13 Score=135.44 Aligned_cols=79 Identities=34% Similarity=0.604 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcC
Q psy16713 64 LRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSK 142 (357)
Q Consensus 64 kkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~Pr 142 (357)
+.+..++|+|+||||||++|+|.+|.+++-...-.+|.++||++|.+|+-||..+|.++|.++|+.|+..||.|..+-+
T Consensus 186 e~KkphiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdN 264 (421)
T KOG3248|consen 186 EAKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 264 (421)
T ss_pred cccCccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 3467899999999999999999999999987778899999999999999999999999999999999999999976644
No 14
>KOG0526|consensus
Probab=99.43 E-value=2.3e-13 Score=139.51 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=72.4
Q ss_pred CCCCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 59 GSATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 59 ~~~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
++.++++||++|||+++|||||.+..|..|+.+ +++++||+|.+|++|+.|+. |.+|+++|+.+|++|+.+|.+|+
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk 600 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYK 600 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhc
Confidence 445567999999999999999999999999998 99999999999999999999 99999999999999999999999
No 15
>KOG4715|consensus
Probab=98.90 E-value=2.1e-09 Score=105.08 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcC
Q psy16713 63 GLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSK 142 (357)
Q Consensus 63 kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~Pr 142 (357)
+-+.|..|-||+-.||.|++..+++|++.||++...||.|+||.+|..|+++||+.|...++.+|..|.+.|..|.-.|-
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp~ 137 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSPA 137 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCch
Confidence 34677888899999999999999999999999999999999999999999999999999999999999999999988776
No 16
>KOG2746|consensus
Probab=98.86 E-value=2.2e-09 Score=113.00 Aligned_cols=83 Identities=76% Similarity=1.227 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCCCCCCchhHhHHHHHH--HHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Q psy16713 58 AGSATGLRSKDRIRRPMNAFMIFSKRHR--AKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHP 135 (357)
Q Consensus 58 ~~~~~kkkdp~~PKRP~nAFmLF~~e~R--~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p 135 (357)
.++...+++..++.||||||+||++.+| ..+...||+..+..|++|||+.|-.|-+.||+.|.++|.+.|+.|-++
T Consensus 170 dgrspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka-- 247 (683)
T KOG2746|consen 170 DGRSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA-- 247 (683)
T ss_pred ccCCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh--
Confidence 4566778999999999999999999999 999999999999999999999999999999999999999999999987
Q ss_pred cCccCcC
Q psy16713 136 EWKWCSK 142 (357)
Q Consensus 136 ~YKy~Pr 142 (357)
+|++.++
T Consensus 248 e~~k~sk 254 (683)
T KOG2746|consen 248 EWKKDSK 254 (683)
T ss_pred hcccccc
Confidence 6666554
No 17
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=98.85 E-value=1.1e-09 Score=101.91 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=99.8
Q ss_pred CCccccCCC----ccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCCCCCCCCCCCCCCCCCCchhHhHHH
Q psy16713 11 KGDIVTTPT----GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGAGSATGLRSKDRIRRPMNAFMIFSK 82 (357)
Q Consensus 11 r~~il~~~~----g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~~~~~kkkdp~~PKRP~nAFmLF~~ 82 (357)
|-+|++.++ +.+.|++||+|++|+++||.+|..+ ..+|.++...+... ..+++|.-.|+-+-.
T Consensus 86 R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~~k---------~~~~~~~~~~~e~~~ 156 (211)
T COG5648 86 RDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYNKK---------LPNKAPIGPFIENEP 156 (211)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhhcc---------cCCCCCCchhhhccH
Confidence 345566666 7788999999999999999888655 57787776666332 346678888999999
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHccc
Q psy16713 83 RHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPE 136 (357)
Q Consensus 83 e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~ 136 (357)
+.|+.+...+|+....++++++|..|+.|+++.|.+|.+.+..++.+|...||+
T Consensus 157 ~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~~ 210 (211)
T COG5648 157 KIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPE 210 (211)
T ss_pred HhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999999998874
No 18
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=97.35 E-value=0.00086 Score=54.11 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=59.6
Q ss_pred CCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCc
Q psy16713 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCS 141 (357)
Q Consensus 69 ~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~P 141 (357)
-|..|.+|=-||.+.......+.++.....+ -+.+...|++|++.+|-+|+.+|.++..+|+.+|-+|+-.+
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~ 74 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRNDRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAP 74 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTSTHHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888889999999988888998877777 45999999999999999999999999999999999998654
No 19
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=96.16 E-value=0.0097 Score=54.49 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCC
Q psy16713 64 LRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLG 112 (357)
Q Consensus 64 kkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LS 112 (357)
.|.|.+-.|-++||-.|+++.-.+||+.+|++++.|+-+.++..|...+
T Consensus 116 ~kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 116 NKPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred cCCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCc
Confidence 4556666788999999999999999999999999999999999998765
No 20
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=96.02 E-value=0.012 Score=54.14 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=44.5
Q ss_pred CchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy16713 74 MNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVK 127 (357)
Q Consensus 74 ~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~K 127 (357)
-||||=|..++|. .|.+|...|+....+.+|..|++.+|..|..++....
T Consensus 83 nnaYLNFLReFRr----kh~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~~ 132 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGLSPQDLIQRAARAWCRLSEAEKNRYRRMAPSVR 132 (183)
T ss_pred chHHHHHHHHHHH----HccCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcchhh
Confidence 5899999999876 5689999999999999999999999999998776543
No 21
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=95.08 E-value=0.047 Score=51.23 Aligned_cols=57 Identities=30% Similarity=0.480 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHH
Q psy16713 62 TGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELAS 124 (357)
Q Consensus 62 ~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~ 124 (357)
.++....++|||.|+||+|+.-+- ...|++...++|.+|+..|..-+ -|..|.-.|.
T Consensus 36 ~~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~~~Qk~~S~~l~~lW~~dp--~k~~W~l~ak 92 (201)
T PF04769_consen 36 SRKRSPEKAKRPLNGFMAFRSYYS----PIFPPLPQKELSGILTKLWEKDP--FKNKWSLMAK 92 (201)
T ss_pred cccccccccccchhHHHHHHHHHH----hhcCCcCHHHHHHHHHHHHhCCc--cHhHHHHHhh
Confidence 345567778999999999987765 45678889999999999998743 3566765554
No 22
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.06 E-value=0.18 Score=38.31 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=35.1
Q ss_pred CchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCC
Q psy16713 74 MNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLG 112 (357)
Q Consensus 74 ~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LS 112 (357)
.+-|=+|.+..|+.|.+.||++....|..+++.+|+.-+
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~ 51 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQ 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999998643
No 23
>KOG0527|consensus
Probab=92.01 E-value=0.079 Score=53.23 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=28.3
Q ss_pred ccchhhhhHHHhhhcccCCCChHhhhccc----ccccccccCC
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQRRGY----CSRHLSLKGA 58 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~ak~~y----~se~~s~k~~ 58 (357)
.+|+|++|.+||.|+++||.+|.++.+++ ..++-.||-.
T Consensus 91 SEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYR 133 (331)
T KOG0527|consen 91 SEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYR 133 (331)
T ss_pred HHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcccc
Confidence 46889999999999999998886554333 3344455444
No 24
>PTZ00199 high mobility group protein; Provisional
Probab=89.42 E-value=0.045 Score=44.98 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=27.2
Q ss_pred cchhhhhHHHhhhcccCCCChHhh----hcccccccccc
Q psy16713 21 IRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSL 55 (357)
Q Consensus 21 ~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~ 55 (357)
.+++++|++|+.|++++|..|+.. +.+|..++..|
T Consensus 54 evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~Y 92 (94)
T PTZ00199 54 AVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEY 92 (94)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999777643 67777766544
No 25
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=88.65 E-value=0.09 Score=41.09 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=30.1
Q ss_pred CCccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 18 PTGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 18 ~~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
..+.|++++|+.|+.|++++|..|+.. +..|..++..++-
T Consensus 28 ~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 71 (77)
T cd01389 28 TNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKY 71 (77)
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 345678999999999999999777533 5677776666544
No 26
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=88.49 E-value=0.075 Score=41.08 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=26.1
Q ss_pred CCccchhhhhHHHhhhcccCCCChHhh----hcccccccc
Q psy16713 18 PTGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHL 53 (357)
Q Consensus 18 ~~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~ 53 (357)
..+.++|++|+.|+.|++++|..|... +..|..++.
T Consensus 28 ~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p 67 (72)
T cd01388 28 ENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYP 67 (72)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCc
Confidence 345667999999999999999777533 455555443
No 27
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=86.14 E-value=0.12 Score=38.29 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=21.4
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ 44 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a 44 (357)
...+.+.+|+.|+.|++++|..|...
T Consensus 28 ~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 28 VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45566999999999999999777643
No 28
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=83.86 E-value=1.9 Score=37.70 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=41.8
Q ss_pred CCCCCCCCCC-chhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCh
Q psy16713 65 RSKDRIRRPM-NAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGP 113 (357)
Q Consensus 65 kdp~~PKRP~-nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSe 113 (357)
....||-|-+ -||--|+...-+.|+.++|+|..+.+--+|-..|..-++
T Consensus 67 ~~drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 67 PIDRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred CCCCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCC
Confidence 4455665555 789999999999999999999999999999999987654
No 29
>KOG0526|consensus
Probab=82.68 E-value=0.62 Score=49.55 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=30.5
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCCC
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGAG 59 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~~ 59 (357)
|.+.|..|++|+.|++ |..|+.. +++|..+|..|++..
T Consensus 562 ~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk~g~ 603 (615)
T KOG0526|consen 562 GDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYKNGQ 603 (615)
T ss_pred HHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhcCCC
Confidence 4456999999999999 5567644 799999999998654
No 30
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=81.89 E-value=0.11 Score=40.24 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCccchhhhhHHHhhhcccCCCChHhh----hccccccc
Q psy16713 18 PTGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRH 52 (357)
Q Consensus 18 ~~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~ 52 (357)
+.+.+.+.+++.|+.|+++||..|+.. +.+|..++
T Consensus 31 ~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~ 69 (73)
T PF09011_consen 31 SFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREM 69 (73)
T ss_dssp SHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566999999999999999878644 45555544
No 31
>smart00398 HMG high mobility group.
Probab=78.85 E-value=0.3 Score=36.23 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.5
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ 44 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a 44 (357)
.+.+.+++|+.|+.|++++|..|...
T Consensus 29 ~~~i~~~~~~~W~~l~~~ek~~y~~~ 54 (70)
T smart00398 29 NAEISKKLGERWKLLSEEEKAPYEEK 54 (70)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45667999999999999999777643
No 32
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=74.08 E-value=5.2 Score=37.19 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=40.0
Q ss_pred CCCChHHHHH-HHHHHhhcCChHHHHHHHHHHHH-HHHHHHHHcccCcc
Q psy16713 93 PNQDNRTVSK-ILGEWWYSLGPEEKQKYHELASE-VKEAHFKAHPEWKW 139 (357)
Q Consensus 93 P~ls~~EISK-~Lge~Wk~LSeeEK~~Y~e~A~~-~Keky~ke~p~YKy 139 (357)
+...+..|++ .||..|+.+|+++|+.|.+.... ....|...+..|.-
T Consensus 62 ~~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~ 110 (198)
T TIGR03481 62 EAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAG 110 (198)
T ss_pred HhCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3568888987 68999999999999999998888 77889888877753
No 33
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=68.63 E-value=8.8 Score=36.00 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=40.4
Q ss_pred CCCChHHHHH-HHHHHhhcCChHHHHHHHHHHHH-HHHHHHHHcccCcc
Q psy16713 93 PNQDNRTVSK-ILGEWWYSLGPEEKQKYHELASE-VKEAHFKAHPEWKW 139 (357)
Q Consensus 93 P~ls~~EISK-~Lge~Wk~LSeeEK~~Y~e~A~~-~Keky~ke~p~YKy 139 (357)
|...+..|++ .||.-|+.+|+++|+.|.+.-.. +..-|...+..|.-
T Consensus 66 p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~ 114 (211)
T PRK15117 66 PYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHG 114 (211)
T ss_pred ccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7788999987 58999999999999999988766 56788888888863
No 34
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=64.31 E-value=8.1 Score=34.39 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=36.5
Q ss_pred CCCChHHHHHH-HHHHhhcCChHHHHHHHHHHHH-HHHHHHHHcccCcc
Q psy16713 93 PNQDNRTVSKI-LGEWWYSLGPEEKQKYHELASE-VKEAHFKAHPEWKW 139 (357)
Q Consensus 93 P~ls~~EISK~-Lge~Wk~LSeeEK~~Y~e~A~~-~Keky~ke~p~YKy 139 (357)
|...+..|++. ||.-|+.+++++|+.|.+.... ....|...+..|.-
T Consensus 36 ~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 36 PYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp GGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred HhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 67788888876 8899999999999999988766 56778888888863
No 35
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=64.01 E-value=1.8 Score=31.64 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=20.8
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ 44 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a 44 (357)
...+.+.+|+.|+.|++++|..|...
T Consensus 28 ~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 28 VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566999999999999999777543
No 36
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=63.34 E-value=1.1 Score=33.39 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=21.2
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ 44 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a 44 (357)
.+.+.+++|+.|+.|++++|..|...
T Consensus 28 ~~~i~~~~~~~W~~l~~~eK~~y~~~ 53 (69)
T PF00505_consen 28 NKEISKILAQMWKNLSEEEKAPYKEE 53 (69)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred cccchhhHHHHHhcCCHHHHHHHHHH
Confidence 45667999999999999999777543
No 37
>KOG0381|consensus
Probab=56.82 E-value=1.5 Score=35.17 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=24.0
Q ss_pred chhhhhHHHhhhcccCCCChHhh----hcccccccc
Q psy16713 22 RKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHL 53 (357)
Q Consensus 22 ~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~ 53 (357)
+.|.+|+.|+.|++++|..|+.. +..|..++.
T Consensus 53 v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~ 88 (96)
T KOG0381|consen 53 VAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELA 88 (96)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999767543 466665544
No 38
>KOG0528|consensus
Probab=50.84 E-value=7.4 Score=41.15 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=23.2
Q ss_pred chhhhhHHHhhhcccCCCChHhhhcccccccc
Q psy16713 22 RKKFNGKQWRRLCSKDGCSKESQRRGYCSRHL 53 (357)
Q Consensus 22 ~sK~~gE~Wk~Lsa~EKk~~E~ak~~y~se~~ 53 (357)
|+|++|-+|+.|+..||.+|-.+-++...-|+
T Consensus 356 ISKILGSRWKaMSN~eKQPYYEEQaRLSk~Hl 387 (511)
T KOG0528|consen 356 ISKILGSRWKAMSNTEKQPYYEEQARLSKLHL 387 (511)
T ss_pred hhHHhcccccccccccccchHHHHHHHHHhhh
Confidence 66999999999999999666555444433333
No 39
>KOG3223|consensus
Probab=40.34 E-value=35 Score=32.35 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=40.2
Q ss_pred CCCCC-CCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCh
Q psy16713 66 SKDRI-RRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGP 113 (357)
Q Consensus 66 dp~~P-KRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSe 113 (357)
+..|| ||=.-||.-|-...-+.|+.+||+|..++.-.+|-.+|..-++
T Consensus 160 ddrHPEkRmrAA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPD 208 (221)
T KOG3223|consen 160 DDRHPEKRMRAAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPD 208 (221)
T ss_pred cccChHHHHHHHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCC
Confidence 33555 4556678889888889999999999999999999999988665
No 40
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=38.14 E-value=72 Score=32.31 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=42.5
Q ss_pred chhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy16713 75 NAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVK 127 (357)
Q Consensus 75 nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~K 127 (357)
.||-.|.--.-..+....|.|+..|-..+.-+.|...|.-+|..|.++|++-.
T Consensus 230 EAlSCFLIpvLrsLar~kPtMtlEeGl~ra~qEW~~~SnfdRmifyemaekFm 282 (328)
T PF12881_consen 230 EALSCFLIPVLRSLARLKPTMTLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFM 282 (328)
T ss_pred hhhhhhHHHHHHHHHhcCCCccHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 45555555555556667789999998889999999999999999999998764
No 41
>KOG3248|consensus
Probab=37.22 E-value=7.6 Score=39.55 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=22.2
Q ss_pred CccchhhhhHHHhhhcccCC-CChHhhhc
Q psy16713 19 TGIRKKFNGKQWRRLCSKDG-CSKESQRR 46 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EK-k~~E~ak~ 46 (357)
...|-+++|.+|..||.+|- ++||+++.
T Consensus 219 SAaiNqiLGrRWH~LSrEEQAKYyElArK 247 (421)
T KOG3248|consen 219 SAAINQILGRRWHALSREEQAKYYELARK 247 (421)
T ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Confidence 34455899999999999996 77788853
No 42
>KOG4715|consensus
Probab=33.89 E-value=20 Score=36.29 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.4
Q ss_pred chhhhhHHHhhhcccCCC----ChHhhhcccccccccccC
Q psy16713 22 RKKFNGKQWRRLCSKDGC----SKESQRRGYCSRHLSLKG 57 (357)
Q Consensus 22 ~sK~~gE~Wk~Lsa~EKk----~~E~ak~~y~se~~s~k~ 57 (357)
|-|++|..|+.|.++||. .|+.+|..|...|..+-+
T Consensus 95 iGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~ 134 (410)
T KOG4715|consen 95 IGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHN 134 (410)
T ss_pred HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 338999999999999994 556778999988877755
No 43
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.97 E-value=1.1e+02 Score=29.08 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=41.2
Q ss_pred CCCChHHHH-HHHHHHhhcCChHHHHHHHHHHHH-HHHHHHHHcccCccCcCCCC
Q psy16713 93 PNQDNRTVS-KILGEWWYSLGPEEKQKYHELASE-VKEAHFKAHPEWKWCSKDKR 145 (357)
Q Consensus 93 P~ls~~EIS-K~Lge~Wk~LSeeEK~~Y~e~A~~-~Keky~ke~p~YKy~PrkKk 145 (357)
|-.++.-++ ..||.-|+.+|+++++.|.+.... +...|-..+-+|+-+.-+..
T Consensus 68 p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~~v~ 122 (202)
T COG2854 68 PYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTLKVK 122 (202)
T ss_pred hhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCceeC
Confidence 445555554 458999999999999999987766 66789999999998866433
No 44
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=24.50 E-value=69 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=16.2
Q ss_pred ChHHHHHHHH-HHhhcCChHHHHHHHHHHH
Q psy16713 96 DNRTVSKILG-EWWYSLGPEEKQKYHELAS 124 (357)
Q Consensus 96 s~~EISK~Lg-e~Wk~LSeeEK~~Y~e~A~ 124 (357)
++.||+--++ +.|..|.+.+|..|.+...
T Consensus 2 tf~Dvav~fs~eEW~~L~~~Qk~ly~dvm~ 31 (41)
T PF01352_consen 2 TFEDVAVYFSQEEWELLDPAQKNLYRDVML 31 (41)
T ss_dssp -----TT---HHHHHTS-HHHHHHHHHHHH
T ss_pred eEEEEEEEcChhhcccccceecccchhHHH
Confidence 3456666665 5599999999999987653
No 45
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=20.95 E-value=2.6e+02 Score=24.07 Aligned_cols=29 Identities=31% Similarity=0.241 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q psy16713 97 NRTVSKILGEWWYSLGPEEKQKYHELASE 125 (357)
Q Consensus 97 ~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~ 125 (357)
...|++.+++.++.|+.|.|+.|.+....
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~ 73 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLL 73 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45678889999999999999999888754
Done!