Query psy16713
Match_columns 357
No_of_seqs 333 out of 1239
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 20:07:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u2b_C Transcription factor SO 99.9 3.2E-25 1.1E-29 172.9 10.6 78 68-145 1-78 (79)
2 3f27_D Transcription factor SO 99.9 3.4E-25 1.2E-29 174.4 10.4 81 66-146 3-83 (83)
3 2yrq_A High mobility group pro 99.9 7.5E-26 2.6E-30 200.8 6.7 121 20-140 46-172 (173)
4 1j46_A SRY, sex-determining re 99.9 9.7E-25 3.3E-29 173.4 12.0 83 66-148 1-83 (85)
5 2gzk_A Sex-determining region 99.9 1.5E-25 5.1E-30 195.9 7.4 121 19-139 32-158 (159)
6 1i11_A Transcription factor SO 99.9 6.4E-25 2.2E-29 172.6 8.8 79 67-145 2-80 (81)
7 4euw_A Transcription factor SO 99.9 1E-24 3.5E-29 180.7 10.4 84 63-146 23-106 (106)
8 1hry_A Human SRY; DNA, DNA-bin 99.9 1.2E-24 4E-29 168.8 9.9 76 66-141 1-76 (76)
9 1gt0_D Transcription factor SO 99.9 1.8E-24 6.2E-29 169.4 11.0 79 68-146 1-79 (80)
10 2e6o_A HMG box-containing prot 99.9 2.5E-24 8.5E-29 171.9 11.4 80 60-139 8-87 (87)
11 2lef_A LEF-1 HMG, protein (lym 99.9 4.3E-24 1.5E-28 169.8 12.2 79 68-146 1-79 (86)
12 1wz6_A HMG-box transcription f 99.9 5.6E-24 1.9E-28 167.6 9.5 79 65-143 3-81 (82)
13 1k99_A Upstream binding factor 99.9 3.2E-23 1.1E-27 169.8 9.0 83 61-143 2-91 (99)
14 2co9_A Thymus high mobility gr 99.9 6.3E-23 2.2E-27 168.6 9.3 85 60-144 8-92 (102)
15 1hme_A High mobility group pro 99.9 1.6E-22 5.3E-27 157.1 9.6 76 64-139 1-76 (77)
16 2crj_A SWI/SNF-related matrix- 99.9 1.3E-22 4.3E-27 163.6 8.6 81 64-144 2-82 (92)
17 4a3n_A Transcription factor SO 99.9 2.1E-22 7.2E-27 153.5 8.5 71 68-138 1-71 (71)
18 2eqz_A High mobility group pro 99.9 4.2E-22 1.4E-26 158.5 9.7 79 60-138 6-86 (86)
19 1aab_A High mobility group pro 99.9 9E-22 3.1E-26 155.2 8.2 77 64-140 2-80 (83)
20 2cs1_A PMS1 protein homolog 1; 99.9 1.9E-21 6.4E-26 156.7 9.6 79 64-142 2-80 (92)
21 1wgf_A Upstream binding factor 99.8 1.3E-21 4.4E-26 157.2 7.6 78 60-137 11-88 (90)
22 1wxl_A Single-strand recogniti 99.8 5.9E-21 2E-25 147.3 8.6 71 67-139 1-71 (73)
23 1cg7_A Protein (NON histone pr 99.8 8.4E-22 2.9E-26 159.2 3.0 79 61-139 12-90 (93)
24 3tq6_A Transcription factor A, 99.8 4.5E-23 1.6E-27 189.9 -5.6 118 19-140 37-181 (214)
25 3nm9_A HMG-D, high mobility gr 99.8 6E-21 2.1E-25 147.3 7.0 70 68-139 2-71 (73)
26 1ckt_A High mobility group 1 p 99.8 1.2E-20 4E-25 144.2 8.2 69 69-137 1-71 (71)
27 3tmm_A Transcription factor A, 99.8 6.3E-23 2.2E-27 191.7 -6.8 118 19-140 69-213 (238)
28 2lhj_A High mobility group pro 99.8 1.3E-21 4.5E-26 159.1 1.0 79 61-139 14-94 (97)
29 2gzk_A Sex-determining region 99.8 7E-19 2.4E-23 153.6 12.5 79 67-145 2-80 (159)
30 2yrq_A High mobility group pro 99.8 7.2E-19 2.5E-23 155.8 12.7 82 60-141 6-89 (173)
31 2d7l_A WD repeat and HMG-box D 99.8 1.2E-19 4.1E-24 144.2 6.1 72 66-140 2-74 (81)
32 3fgh_A Transcription factor A, 99.8 2.7E-19 9.2E-24 135.7 6.9 66 68-137 1-66 (67)
33 1v64_A Nucleolar transcription 99.8 3.2E-19 1.1E-23 148.5 7.9 77 60-140 7-84 (108)
34 1l8y_A Upstream binding factor 99.8 1.6E-18 5.4E-23 141.1 8.6 72 68-140 3-74 (91)
35 1v63_A Nucleolar transcription 99.7 3.9E-18 1.3E-22 140.3 7.7 74 65-140 4-77 (101)
36 2cto_A Novel protein; high mob 99.7 4.9E-18 1.7E-22 138.6 7.6 71 63-135 4-77 (93)
37 2yuk_A Myeloid/lymphoid or mix 99.7 3.5E-19 1.2E-23 144.7 -0.9 68 62-133 15-84 (90)
38 3tmm_A Transcription factor A, 99.7 3.5E-17 1.2E-21 152.9 6.1 75 64-138 36-110 (238)
39 3tq6_A Transcription factor A, 99.7 6.6E-17 2.3E-21 148.8 7.0 74 66-139 6-79 (214)
40 1aab_A High mobility group pro 95.4 0.0018 6.2E-08 50.1 -1.1 39 20-58 38-80 (83)
41 1l8y_A Upstream binding factor 95.3 0.0015 5.2E-08 52.8 -1.7 40 19-58 31-74 (91)
42 3fgh_A Transcription factor A, 95.2 0.00053 1.8E-08 51.1 -4.3 41 13-53 20-64 (67)
43 2lef_A LEF-1 HMG, protein (lym 94.9 0.0038 1.3E-07 48.7 -0.3 38 19-56 30-71 (86)
44 1ckt_A High mobility group 1 p 94.7 0.0044 1.5E-07 46.3 -0.6 34 20-53 32-69 (71)
45 1gt0_D Transcription factor SO 94.3 0.0049 1.7E-07 47.2 -1.0 40 19-58 30-73 (80)
46 2cs1_A PMS1 protein homolog 1; 93.9 0.0054 1.8E-07 48.6 -1.6 40 20-59 36-79 (92)
47 1wgf_A Upstream binding factor 93.9 0.0086 2.9E-07 47.2 -0.5 38 19-56 48-89 (90)
48 1j46_A SRY, sex-determining re 93.5 0.011 3.9E-07 45.9 -0.4 40 19-58 32-75 (85)
49 1hme_A High mobility group pro 93.2 0.014 4.6E-07 44.3 -0.4 38 19-56 34-75 (77)
50 3f27_D Transcription factor SO 93.1 0.01 3.5E-07 45.7 -1.3 39 19-57 34-76 (83)
51 1wz6_A HMG-box transcription f 93.1 0.017 5.8E-07 44.4 -0.0 39 19-57 35-77 (82)
52 1v63_A Nucleolar transcription 93.0 0.0052 1.8E-07 49.8 -3.2 40 18-57 33-76 (101)
53 4a3n_A Transcription factor SO 92.9 0.0088 3E-07 44.4 -1.8 36 20-55 31-70 (71)
54 1hry_A Human SRY; DNA, DNA-bin 92.6 0.012 4.2E-07 44.5 -1.4 38 18-55 31-72 (76)
55 2d7l_A WD repeat and HMG-box D 92.5 0.02 6.9E-07 44.8 -0.3 26 19-44 34-59 (81)
56 2eqz_A High mobility group pro 92.4 0.0063 2.1E-07 47.5 -3.4 35 20-54 46-84 (86)
57 3u2b_C Transcription factor SO 92.3 0.015 5.1E-07 44.2 -1.3 39 19-57 30-72 (79)
58 1i11_A Transcription factor SO 92.3 0.021 7.3E-07 43.8 -0.4 39 19-57 32-74 (81)
59 1k99_A Upstream binding factor 92.3 0.029 9.9E-07 45.1 0.4 39 19-57 38-80 (99)
60 4euw_A Transcription factor SO 92.3 0.012 4.1E-07 48.0 -2.0 39 20-58 58-100 (106)
61 2lhj_A High mobility group pro 91.9 0.016 5.5E-07 46.2 -1.6 37 19-55 52-92 (97)
62 1cg7_A Protein (NON histone pr 91.8 0.017 5.9E-07 45.7 -1.5 45 11-55 36-88 (93)
63 1v64_A Nucleolar transcription 90.6 0.0092 3.1E-07 49.0 -4.4 42 16-57 38-83 (108)
64 1wxl_A Single-strand recogniti 90.3 0.044 1.5E-06 41.2 -0.4 36 20-57 32-71 (73)
65 2e6o_A HMG box-containing prot 90.2 0.025 8.6E-07 44.2 -1.9 35 20-54 46-84 (87)
66 2crj_A SWI/SNF-related matrix- 89.8 0.02 6.8E-07 45.2 -2.8 39 19-57 35-77 (92)
67 2cto_A Novel protein; high mob 88.2 0.077 2.6E-06 42.7 -0.5 36 17-52 34-76 (93)
68 2co9_A Thymus high mobility gr 86.9 0.028 9.7E-07 45.3 -3.8 36 20-55 46-85 (102)
69 3nm9_A HMG-D, high mobility gr 86.8 0.051 1.7E-06 40.9 -2.2 35 19-55 31-69 (73)
70 2yuk_A Myeloid/lymphoid or mix 78.0 0.17 5.7E-06 40.6 -2.5 36 10-45 37-74 (90)
71 2qgu_A Probable signal peptide 56.4 9.4 0.00032 34.3 4.0 46 93-138 70-117 (211)
72 2yua_A Williams-beuren syndrom 29.9 90 0.0031 24.2 5.4 38 81-118 35-77 (99)
73 1hdj_A Human HSP40, HDJ-1; mol 23.6 1.6E+02 0.0056 21.4 5.6 37 81-117 21-61 (77)
74 2o37_A Protein SIS1; HSP40, J- 23.6 1.3E+02 0.0045 22.9 5.3 39 81-119 26-66 (92)
75 2och_A Hypothetical protein DN 23.1 1.3E+02 0.0043 21.8 4.8 37 81-117 26-64 (73)
76 2dn9_A DNAJ homolog subfamily 20.6 1.2E+02 0.0039 22.3 4.2 37 81-117 25-66 (79)
77 2ctw_A DNAJ homolog subfamily 20.1 1.4E+02 0.0048 23.6 4.9 41 81-121 35-80 (109)
No 1
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=3.2e-25 Score=172.86 Aligned_cols=78 Identities=32% Similarity=0.591 Sum_probs=74.8
Q ss_pred CCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCCCC
Q psy16713 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKR 145 (357)
Q Consensus 68 ~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~PrkKk 145 (357)
|+||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|.++|+.++++|.++||+|+|+|+++.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk~~ 78 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKV 78 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999998654
No 2
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.92 E-value=3.4e-25 Score=174.44 Aligned_cols=81 Identities=36% Similarity=0.697 Sum_probs=73.5
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCCCC
Q psy16713 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKR 145 (357)
Q Consensus 66 dp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~PrkKk 145 (357)
.+++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|.++|+.++++|.++||+|+|+|++++
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~kk 82 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 82 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC--
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred C
Q psy16713 146 K 146 (357)
Q Consensus 146 k 146 (357)
+
T Consensus 83 ~ 83 (83)
T 3f27_D 83 Q 83 (83)
T ss_dssp -
T ss_pred C
Confidence 4
No 3
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=7.5e-26 Score=200.80 Aligned_cols=121 Identities=22% Similarity=0.359 Sum_probs=107.6
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCCCC--CCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCC
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGAGS--ATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHP 93 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~~~--~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P 93 (357)
+.++|++|++|+.|+++||..|+.. +.+|..++..+..... +++.+++++||||+|||||||+++|..|+.+||
T Consensus 46 ~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p 125 (173)
T 2yrq_A 46 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP 125 (173)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCCCCCCSSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCccccCcccHHHHHHHHHHHHHHHHCC
Confidence 4677999999999999999777643 5788888776655432 345579999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 94 NQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 94 ~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
++++.+|+++||++|++|++++|++|+++|+.++++|..+|++|++.
T Consensus 126 ~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 126 GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp SSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999874
No 4
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.92 E-value=9.7e-25 Score=173.40 Aligned_cols=83 Identities=33% Similarity=0.555 Sum_probs=79.1
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCCCC
Q psy16713 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKR 145 (357)
Q Consensus 66 dp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~PrkKk 145 (357)
.|++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|.++|+.++++|..+||+|+|+|++++
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~~ 80 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA 80 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCcc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCC
Q psy16713 146 KSS 148 (357)
Q Consensus 146 k~~ 148 (357)
+..
T Consensus 81 ~~~ 83 (85)
T 1j46_A 81 KML 83 (85)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 5
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.92 E-value=1.5e-25 Score=195.90 Aligned_cols=121 Identities=23% Similarity=0.327 Sum_probs=106.7
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCCCC--CCCCCCCCCCCCCCchhHhHHHHHHHHHHhhC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGAGS--ATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIH 92 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~~~--~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~ 92 (357)
...|+|++|++|++|++++|..|+.. +..|..++..+....+ +++.+++++||||+|||||||+++|..|+.+|
T Consensus 32 ~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~ 111 (159)
T 2gzk_A 32 NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 111 (159)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCCGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccchhhHhhHHHHHHhC
Confidence 44677999999999999999777543 5677777776654432 33458999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCcc
Q psy16713 93 PNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139 (357)
Q Consensus 93 P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy 139 (357)
|++++.+|+++||++|++|++++|++|+++|+.++++|.++|++|+.
T Consensus 112 p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 112 PGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999974
No 6
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=6.4e-25 Score=172.58 Aligned_cols=79 Identities=38% Similarity=0.691 Sum_probs=69.3
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCCCC
Q psy16713 67 KDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKR 145 (357)
Q Consensus 67 p~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~PrkKk 145 (357)
.++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|.++|+.++++|.++||+|+|+|++++
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~~ 80 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 80 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--------
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998765
No 7
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=180.71 Aligned_cols=84 Identities=32% Similarity=0.623 Sum_probs=71.8
Q ss_pred CCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcC
Q psy16713 63 GLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSK 142 (357)
Q Consensus 63 kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~Pr 142 (357)
..+++++||||+|||||||+++|+.|+.++|++++.+|+++||++|+.|+++||++|+++|++++++|.++||+|+|+|+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Pr 102 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPR 102 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC---
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy16713 143 DKRK 146 (357)
Q Consensus 143 kKkk 146 (357)
+|++
T Consensus 103 rkKs 106 (106)
T 4euw_A 103 RRKS 106 (106)
T ss_dssp ----
T ss_pred CCCC
Confidence 7653
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=1.2e-24 Score=168.78 Aligned_cols=76 Identities=33% Similarity=0.587 Sum_probs=72.6
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCc
Q psy16713 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCS 141 (357)
Q Consensus 66 dp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~P 141 (357)
||++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|.++|+.++++|.++||+|+|+|
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999997
No 9
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.91 E-value=1.8e-24 Score=169.41 Aligned_cols=79 Identities=39% Similarity=0.717 Sum_probs=76.5
Q ss_pred CCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCCCCC
Q psy16713 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKRK 146 (357)
Q Consensus 68 ~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~PrkKkk 146 (357)
++||||+|||||||+++|..|+.+||++++.+|+++||++|+.|++++|++|+++|+.++++|..+||+|+|+|+++++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~k 79 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 79 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999987665
No 10
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=171.91 Aligned_cols=80 Identities=34% Similarity=0.593 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCcc
Q psy16713 60 SATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139 (357)
Q Consensus 60 ~~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy 139 (357)
..++++++++||||+|||||||+++|..|+.+||++++.+|+++||++|++|+++||++|+++|++++++|.++||+|+|
T Consensus 8 ~~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky 87 (87)
T 2e6o_A 8 GTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 87 (87)
T ss_dssp SSCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=4.3e-24 Score=169.84 Aligned_cols=79 Identities=33% Similarity=0.598 Sum_probs=76.0
Q ss_pred CCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCCCCC
Q psy16713 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKRK 146 (357)
Q Consensus 68 ~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~PrkKkk 146 (357)
++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|.++|+.++++|..+||+|+|+|+.+++
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~~~ 79 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKK 79 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999986544
No 12
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.90 E-value=5.6e-24 Score=167.56 Aligned_cols=79 Identities=48% Similarity=0.856 Sum_probs=77.1
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCC
Q psy16713 65 RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKD 143 (357)
Q Consensus 65 kdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~Prk 143 (357)
.++++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|+++|+.++++|.++|++|+|+|++
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~~ 81 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSS 81 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999975
No 13
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.89 E-value=3.2e-23 Score=169.77 Aligned_cols=83 Identities=24% Similarity=0.353 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-------HHHH
Q psy16713 61 ATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEA-------HFKA 133 (357)
Q Consensus 61 ~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Kek-------y~ke 133 (357)
+++++||++||||+|||||||++.|..|+.+||++++.||+++||++|++||+++|++|+++|+.++++ |...
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999 6666
Q ss_pred cccCccCcCC
Q psy16713 134 HPEWKWCSKD 143 (357)
Q Consensus 134 ~p~YKy~Prk 143 (357)
+|+|+|+|++
T Consensus 82 ~P~~~~~~~~ 91 (99)
T 1k99_A 82 HPDLIQNAKK 91 (99)
T ss_dssp CCCCSCCCCC
T ss_pred CCCccCCCcc
Confidence 7888888875
No 14
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=6.3e-23 Score=168.56 Aligned_cols=85 Identities=24% Similarity=0.412 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCcc
Q psy16713 60 SATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139 (357)
Q Consensus 60 ~~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy 139 (357)
++++++|+++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|+++|+.++++|..+|++|++
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCC
Q psy16713 140 CSKDK 144 (357)
Q Consensus 140 ~PrkK 144 (357)
.+..+
T Consensus 88 ~~~~~ 92 (102)
T 2co9_A 88 SLVSK 92 (102)
T ss_dssp HHTSS
T ss_pred hcccc
Confidence 87643
No 15
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.88 E-value=1.6e-22 Score=157.12 Aligned_cols=76 Identities=29% Similarity=0.503 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCcc
Q psy16713 64 LRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139 (357)
Q Consensus 64 kkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy 139 (357)
++||++||||+|||||||+++|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|.++|++|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999985
No 16
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.87 E-value=1.3e-22 Score=163.59 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCC
Q psy16713 64 LRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKD 143 (357)
Q Consensus 64 kkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~Prk 143 (357)
.+||++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|+++|+.++++|.++|++|++.+..
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~ 81 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAY 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q psy16713 144 K 144 (357)
Q Consensus 144 K 144 (357)
+
T Consensus 82 ~ 82 (92)
T 2crj_A 82 K 82 (92)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.87 E-value=2.1e-22 Score=153.47 Aligned_cols=71 Identities=39% Similarity=0.728 Sum_probs=63.8
Q ss_pred CCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 68 ~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
++||||+|||||||+++|..|+.+||++++.+|+++||++|++|++++|++|.++|+.++++|.++||+||
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999996
No 18
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=158.47 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=75.0
Q ss_pred CCCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCC--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccC
Q psy16713 60 SATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQD--NRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEW 137 (357)
Q Consensus 60 ~~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls--~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~Y 137 (357)
++++++||++||||+|||||||+++|..|+.+||+++ +.||+++||++|++|++++|++|+++|+.++++|.++|++|
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556789999999999999999999999999999997 59999999999999999999999999999999999999998
Q ss_pred c
Q psy16713 138 K 138 (357)
Q Consensus 138 K 138 (357)
+
T Consensus 86 ~ 86 (86)
T 2eqz_A 86 G 86 (86)
T ss_dssp C
T ss_pred C
Confidence 5
No 19
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.85 E-value=9e-22 Score=155.24 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCC--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 64 LRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQD--NRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 64 kkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls--~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
++||++||||+|||||||+++|..|+.+||+++ +.||+++||++|++|++++|++|+++|+.++++|.++|++|+-.
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999999999999997 49999999999999999999999999999999999999999743
No 20
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=156.71 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcC
Q psy16713 64 LRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSK 142 (357)
Q Consensus 64 kkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~Pr 142 (357)
..++++||||+|||||||+++|..|+.+||++++.||+++||++|++|++++|++|+++|+.++++|.++|++|+.+..
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999998743
No 21
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.3e-21 Score=157.24 Aligned_cols=78 Identities=21% Similarity=0.445 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccC
Q psy16713 60 SATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEW 137 (357)
Q Consensus 60 ~~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~Y 137 (357)
+.++++|+++||||+|||||||+++|..|+.+||++++.||+++||++|++|++++|++|+++|+.++++|.++|..+
T Consensus 11 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~ 88 (90)
T 1wgf_A 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88 (90)
T ss_dssp SCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred cCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345668999999999999999999999999999999999999999999999999999999999999999999988654
No 22
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.84 E-value=5.9e-21 Score=147.33 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=69.1
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCcc
Q psy16713 67 KDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139 (357)
Q Consensus 67 p~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy 139 (357)
|++||||+|||||||+++|..|+.+||++++.||+++||++|++| ++|++|+++|+.++++|.++|++|+-
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999999999999999999999999999 89999999999999999999999974
No 23
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.83 E-value=8.4e-22 Score=159.23 Aligned_cols=79 Identities=28% Similarity=0.408 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCcc
Q psy16713 61 ATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139 (357)
Q Consensus 61 ~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy 139 (357)
+++++|+++||||+|||||||+++|..|+.+||++++.||+++||++|++|++++|++|+++|+.++++|..+|++|+.
T Consensus 12 ~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~ 90 (93)
T 1cg7_A 12 TRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90 (93)
T ss_dssp CCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999999999974
No 24
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.83 E-value=4.5e-23 Score=189.92 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=97.7
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCC-----------------------CCCCCCCCCCCCC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGA-----------------------GSATGLRSKDRIR 71 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~-----------------------~~~~kkkdp~~PK 71 (357)
.+.++|++|++|++|+++||..|+.. +..|..++..+... .+++..+++++||
T Consensus 37 ~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~q~~~~~~~~~~~~~krk~~kkkk~~kdp~~PK 116 (214)
T 3tq6_A 37 TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPK 116 (214)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHhhhcchhhhhhhccccCcc
Confidence 45677999999999999999777643 46666655443210 0112236899999
Q ss_pred CCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 72 RPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 72 RP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
||+|||||||+++|..|+.++| .+|+++||++|++|++++|++|+++|+.++++|..+|++|+..
T Consensus 117 rP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 117 RPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp CCCCHHHHHHHHHTTTSSCSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHhhccCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987766 4999999999999999999999999999999999999999876
No 25
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.83 E-value=6e-21 Score=147.30 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=68.0
Q ss_pred CCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCcc
Q psy16713 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139 (357)
Q Consensus 68 ~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy 139 (357)
++||||+|||||||+++|..|+.+||++++.||+++||++|++|++ |++|+++|++++++|.++|++|+-
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~ 71 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEA 71 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999998 999999999999999999999974
No 26
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.83 E-value=1.2e-20 Score=144.21 Aligned_cols=69 Identities=22% Similarity=0.397 Sum_probs=67.0
Q ss_pred CCCCCCchhHhHHHHHHHHHHhhCCCCCh--HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccC
Q psy16713 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDN--RTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEW 137 (357)
Q Consensus 69 ~PKRP~nAFmLF~~e~R~~ik~e~P~ls~--~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~Y 137 (357)
+||||+|||||||+++|..|+.+||++++ .||+++||++|++|++++|++|.++|+.++++|.++|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999976 9999999999999999999999999999999999999987
No 27
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.82 E-value=6.3e-23 Score=191.72 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=98.2
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCC-----------------------CCCCCCCCCCCCC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGA-----------------------GSATGLRSKDRIR 71 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~-----------------------~~~~kkkdp~~PK 71 (357)
.+.++|++|++|+.|+++||..|+.. +..|..++..+... .+++..+++++||
T Consensus 69 ~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~p~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PK 148 (238)
T 3tmm_A 69 TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPK 148 (238)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccchhhhcccCCCC
Confidence 45677999999999999999777643 46676665444210 0112246899999
Q ss_pred CCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 72 RPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 72 RP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
||+|||||||+++|..|+.++| .+|+++||++|++|++++|++|+++|+.++++|.++|++|+..
T Consensus 149 rP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 149 RPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp CCCCHHHHHHHHHTTTSCCSSH----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987766 4999999999999999999999999999999999999999887
No 28
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.82 E-value=1.3e-21 Score=159.05 Aligned_cols=79 Identities=20% Similarity=0.439 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCC--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 61 ATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQD--NRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 61 ~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls--~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
+++++|+++||||+|||||||+++|..|+.+||+++ +.+|+++||++|++|++++|++|+++|+.++++|..+|++|+
T Consensus 14 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 93 (97)
T 2lhj_A 14 RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYA 93 (97)
T ss_dssp TCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999 999999999999999999999999999999999999999997
Q ss_pred c
Q psy16713 139 W 139 (357)
Q Consensus 139 y 139 (357)
.
T Consensus 94 ~ 94 (97)
T 2lhj_A 94 Q 94 (97)
T ss_dssp H
T ss_pred h
Confidence 5
No 29
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.79 E-value=7e-19 Score=153.58 Aligned_cols=79 Identities=32% Similarity=0.587 Sum_probs=75.7
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccCcCCCC
Q psy16713 67 KDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWCSKDKR 145 (357)
Q Consensus 67 p~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~PrkKk 145 (357)
+++||||+||||||+.+.|..|+.+||++++.||+++||++|++|++++|.+|.++|+.++++|..+|++|++.|++++
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~k 80 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETK 80 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCCG
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccccccccc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999987543
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=155.83 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCC--CChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccC
Q psy16713 60 SATGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPN--QDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEW 137 (357)
Q Consensus 60 ~~~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~--ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~Y 137 (357)
++..++|+++||||+|||||||+++|..|+.+||+ +++.||+++||++|++|+++||++|+++|+.++++|..+|++|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44567899999999999999999999999999999 6899999999999999999999999999999999999999999
Q ss_pred ccCc
Q psy16713 138 KWCS 141 (357)
Q Consensus 138 Ky~P 141 (357)
+...
T Consensus 86 ~~~~ 89 (173)
T 2yrq_A 86 IPPK 89 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 8653
No 31
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=144.21 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHhhCCCCC-hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQD-NRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 66 dp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls-~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
++++||||+|||||||+++|..|+.+||+++ +.||+++||++|++|+++||++|+++|+.+. ..++++|+.+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~---~~~~~e~kkR 74 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET---ASEGTEAKKR 74 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS---SSSCCCCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hhhhhhhhhc
Confidence 6789999999999999999999999999998 9999999999999999999999999999884 2344555543
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=135.72 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=63.1
Q ss_pred CCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccC
Q psy16713 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEW 137 (357)
Q Consensus 68 ~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~Y 137 (357)
|+||||+|||||||+++|..|+..|| .+|+++||++|++|++++|++|+++|+.++++|.++|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999988776 7999999999999999999999999999999999999887
No 33
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=3.2e-19 Score=148.52 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=72.5
Q ss_pred CCCCCCCCCCC-CCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 60 SATGLRSKDRI-RRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 60 ~~~kkkdp~~P-KRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
+.++.+++++| |||+|||||||+++|..|+ ++++.||+++||++|++|+++||++|+++|+.++++|..+|++|+
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999 9999999999999999987 789999999999999999999999999999999999999999997
Q ss_pred cC
Q psy16713 139 WC 140 (357)
Q Consensus 139 y~ 140 (357)
..
T Consensus 83 ~~ 84 (108)
T 1v64_A 83 ES 84 (108)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 34
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.75 E-value=1.6e-18 Score=141.15 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 68 ~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
++||||++|||||+++.|..++.++|+ ++.||+|+||++|++|+++||++|+++|+.+|++|.++|.+|+..
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~ 74 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAP 74 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 579999999999999999999999999 999999999999999999999999999999999999999999754
No 35
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=3.9e-18 Score=140.25 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=66.5
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCccC
Q psy16713 65 RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKWC 140 (357)
Q Consensus 65 kdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy~ 140 (357)
....+||||+|||||||++++. ..+++++++.||+++||++|++|+++||++|+++|+.++++|.++|++|+-.
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~ 77 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKS 77 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999975 3455668899999999999999999999999999999999999999999743
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.9e-18 Score=138.57 Aligned_cols=71 Identities=24% Similarity=0.310 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHH---HHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Q psy16713 63 GLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKIL---GEWWYSLGPEEKQKYHELASEVKEAHFKAHP 135 (357)
Q Consensus 63 kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~L---ge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p 135 (357)
....+++||||+|||||||+++|++|+.+ ++++.||+++| |++|++|+++||++|+++|+++|++|.+++.
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 34678899999999999999999999998 89999999999 9999999999999999999999999999873
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-19 Score=144.72 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCC--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q psy16713 62 TGLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQD--NRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKA 133 (357)
Q Consensus 62 ~kkkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls--~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke 133 (357)
+.++||++||||+|||||||+++|++|+.+||+++ +.||+ ++|++|++++|++|+++|+.+|++|+.+
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34579999999999999999999999999999999 99999 9999999999999999999999999874
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.67 E-value=3.5e-17 Score=152.87 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCc
Q psy16713 64 LRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWK 138 (357)
Q Consensus 64 kkdp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YK 138 (357)
.+++++||||+|||||||+++|..|+.+||++++.||+++||++|+.|+++||.+|+++|+.++++|.++|+.|+
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~ 110 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFK 110 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999996
No 39
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.66 E-value=6.6e-17 Score=148.80 Aligned_cols=74 Identities=14% Similarity=0.266 Sum_probs=71.4
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHcccCcc
Q psy16713 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAHFKAHPEWKW 139 (357)
Q Consensus 66 dp~~PKRP~nAFmLF~~e~R~~ik~e~P~ls~~EISK~Lge~Wk~LSeeEK~~Y~e~A~~~Keky~ke~p~YKy 139 (357)
.+++||||+|||||||++.|..|+.+||++++.||+++||++|++|+++||.+|+++|+.++++|..+|+.|+-
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~ 79 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE 79 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999963
No 40
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=95.36 E-value=0.0018 Score=50.12 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=32.3
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCC
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGA 58 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~ 58 (357)
+.++|++|++|+.|++++|..|+.. +.+|..++..+...
T Consensus 38 ~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 38 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp SSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6678999999999999999777643 67898888887654
No 41
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=95.30 E-value=0.0015 Score=52.83 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=32.9
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGA 58 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~ 58 (357)
.+.++|.+|++|++|+++||.+|+.. +.+|..++..|...
T Consensus 31 ~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~ 74 (91)
T 1l8y_A 31 RVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 36678999999999999999888743 68899998877553
No 42
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=95.23 E-value=0.00053 Score=51.10 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=31.5
Q ss_pred ccccCCCccchhhhhHHHhhhcccCCCChHhh----hcccccccc
Q psy16713 13 DIVTTPTGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHL 53 (357)
Q Consensus 13 ~il~~~~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~ 53 (357)
.+...+++.++|.+|+.|+.|++++|..|+.. +.+|..++.
T Consensus 20 ~~k~~~p~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 64 (67)
T 3fgh_A 20 EAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK 64 (67)
T ss_dssp HHCSSSHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678999999999999999999777643 566766543
No 43
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=94.94 E-value=0.0038 Score=48.66 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=30.2
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hccccccccccc
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLK 56 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k 56 (357)
.+.|++++|+.|+.|++++|..|+.. +..|..++..++
T Consensus 30 ~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (86)
T 2lef_A 30 SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS 71 (86)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34678999999999999999777533 577888777665
No 44
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=94.68 E-value=0.0044 Score=46.28 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=26.8
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccc
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHL 53 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~ 53 (357)
+.++|++|++|+.|++++|..|+.. +.+|..++.
T Consensus 32 ~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 69 (71)
T 1ckt_A 32 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 69 (71)
T ss_dssp HHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999877643 567766554
No 45
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=94.34 E-value=0.0049 Score=47.22 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=31.7
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGA 58 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~ 58 (357)
.+.|++++|+.|+.|++++|..|+.. +..|..++..++-.
T Consensus 30 ~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (80)
T 1gt0_D 30 NSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73 (80)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 34577999999999999999777643 57888888777654
No 46
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.92 E-value=0.0054 Score=48.56 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=31.5
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCCC
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGAG 59 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~~ 59 (357)
..|+|++|++|+.|++++|..|+.. +.+|..++..+....
T Consensus 36 ~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~ 79 (92)
T 2cs1_A 36 EDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQE 79 (92)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4577999999999999999777643 578888877776543
No 47
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=93.88 E-value=0.0086 Score=47.24 Aligned_cols=38 Identities=8% Similarity=0.136 Sum_probs=29.4
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hccccccccccc
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLK 56 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k 56 (357)
.+.|+|++|++|+.|++++|..|+.. +.+|..++..+.
T Consensus 48 ~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~~ 89 (90)
T 1wgf_A 48 ESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPSS 89 (90)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577999999999999999777643 577887765543
No 48
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=93.49 E-value=0.011 Score=45.90 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=31.4
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGA 58 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~ 58 (357)
.+.|+|++|+.|+.|++++|..|+.. +..|..++..++-.
T Consensus 32 ~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 75 (85)
T 1j46_A 32 NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (85)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 34577999999999999999777533 57788887777554
No 49
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=93.21 E-value=0.014 Score=44.32 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=29.5
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hccccccccccc
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLK 56 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k 56 (357)
.+.|++++|+.|+.|++++|..|+.. +.+|..++..++
T Consensus 34 ~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 75 (77)
T 1hme_A 34 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 75 (77)
T ss_dssp HHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577999999999999999877643 567877766653
No 50
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=93.07 E-value=0.01 Score=45.68 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=30.5
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
.+.+++++|+.|+.|++++|..|+.. +..|..++..++-
T Consensus 34 ~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 76 (83)
T 3f27_D 34 NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKY 76 (83)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 35678999999999999999777643 5777777766654
No 51
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=93.06 E-value=0.017 Score=44.44 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=30.9
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
.+.|+|++|+.|+.|++++|..|+.. +..|..++..++.
T Consensus 35 ~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~ 77 (82)
T 1wz6_A 35 NRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRS 77 (82)
T ss_dssp TTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45678999999999999999777643 5778887776654
No 52
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=93.00 E-value=0.0052 Score=49.83 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 18 PTGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 18 ~~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
..+.++|++|++|+.|+++||..|+.. +.+|..++..+..
T Consensus 33 ~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 76 (101)
T 1v63_A 33 PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVK 76 (101)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999877643 5677777665543
No 53
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=92.89 E-value=0.0088 Score=44.42 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=26.4
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccccc
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSL 55 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~ 55 (357)
+.++|++|+.|+.|++++|..|+.. +..|..++..+
T Consensus 31 ~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 70 (71)
T 4a3n_A 31 AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNY 70 (71)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCc
Confidence 5677999999999999999777644 45666555433
No 54
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=92.60 E-value=0.012 Score=44.48 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=28.9
Q ss_pred CCccchhhhhHHHhhhcccCCCChHhh----hcccccccccc
Q psy16713 18 PTGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSL 55 (357)
Q Consensus 18 ~~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~ 55 (357)
..+.|+|++|+.|+.|++++|..|+.. +..|..++..+
T Consensus 31 ~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 72 (76)
T 1hry_A 31 RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNY 72 (76)
T ss_dssp SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 345678999999999999999777543 56676666554
No 55
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.54 E-value=0.02 Score=44.76 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=21.7
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ 44 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a 44 (357)
.+.|+|++|++|++|++++|..|+..
T Consensus 34 ~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 34 EADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45667999999999999999777644
No 56
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.39 E-value=0.0063 Score=47.50 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=27.3
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hccccccccc
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLS 54 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s 54 (357)
..++|++|++|+.|++++|..|+.. +.+|..++..
T Consensus 46 ~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 46 AEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999777643 5677766543
No 57
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=92.31 E-value=0.015 Score=44.23 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=30.3
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
.+.|++++|+.|+.|++++|..|+.. +..|..++..++-
T Consensus 30 ~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 30 NAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 35677999999999999999777643 5677777766654
No 58
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=92.30 E-value=0.021 Score=43.79 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=28.3
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
.+.|+|++|+.|+.|++++|..|... +..|..++..++-
T Consensus 32 ~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 74 (81)
T 1i11_A 32 NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKY 74 (81)
T ss_dssp HHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--
T ss_pred HHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 34577999999999999999777533 4667777666644
No 59
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=92.29 E-value=0.029 Score=45.12 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=29.8
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
.+.|+|++|++|+.|++++|..|+.. +..|..++..+..
T Consensus 38 ~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 38 NLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp SHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577999999999999999777643 5777776655544
No 60
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=92.27 E-value=0.012 Score=47.98 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=30.4
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccccccCC
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKGA 58 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~~ 58 (357)
+.++|++|+.|+.|++++|..|+.. +..|..++..|+-.
T Consensus 58 ~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 58 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 5678999999999999999777643 67788877766543
No 61
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=91.87 E-value=0.016 Score=46.18 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=28.4
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccc
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSL 55 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~ 55 (357)
.+.|++++|+.|+.|++++|..|+.. +.+|..++..+
T Consensus 52 ~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 52 VAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp SSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999777533 56777665444
No 62
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=91.79 E-value=0.017 Score=45.74 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCccccCCCc----cchhhhhHHHhhhcccCCCChHhh----hcccccccccc
Q psy16713 11 KGDIVTTPTG----IRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSL 55 (357)
Q Consensus 11 r~~il~~~~g----~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~ 55 (357)
|..+....++ .|++++|+.|+.|++++|..|+.. +..|..++..+
T Consensus 36 r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 36 RDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp TSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 467999999999999999777644 56777666544
No 63
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=90.57 E-value=0.0092 Score=48.99 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=32.1
Q ss_pred cCCCccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 16 TTPTGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 16 ~~~~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
....+.++|++|++|+.|+++||..|+.. +.+|..++..+..
T Consensus 38 ~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 38 DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999999777643 5677777665543
No 64
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=90.34 E-value=0.044 Score=41.24 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=27.6
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
+.++|++|++|+.| ++|..|+.. +.+|..++..++.
T Consensus 32 ~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 32 TEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp HHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred HHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55779999999999 778777533 6788888777643
No 65
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=90.22 E-value=0.025 Score=44.17 Aligned_cols=35 Identities=6% Similarity=0.093 Sum_probs=26.0
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hccccccccc
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLS 54 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s 54 (357)
..|+|++|+.|+.|++++|..|+.. +..|..++..
T Consensus 46 ~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~ 84 (87)
T 2e6o_A 46 RAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPD 84 (87)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 4577999999999999999777644 4555554443
No 66
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=89.83 E-value=0.02 Score=45.23 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=29.4
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccccC
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSLKG 57 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~k~ 57 (357)
.+.|+|++|++|+.|++++|..|+.. +.+|..++..+..
T Consensus 35 ~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 77 (92)
T 2crj_A 35 FPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQ 77 (92)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45577999999999999999777643 5677776655543
No 67
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.23 E-value=0.077 Score=42.72 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=26.6
Q ss_pred CCCccchhhh---hHHHhhhcccCCCChHhh----hccccccc
Q psy16713 17 TPTGIRKKFN---GKQWRRLCSKDGCSKESQ----RRGYCSRH 52 (357)
Q Consensus 17 ~~~g~~sK~~---gE~Wk~Lsa~EKk~~E~a----k~~y~se~ 52 (357)
...+.++|++ |++|++|+++||..|+.. +..|..+.
T Consensus 34 ~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 34 LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 3456777887 999999999999888754 35555433
No 68
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=86.94 E-value=0.028 Score=45.26 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=27.7
Q ss_pred ccchhhhhHHHhhhcccCCCChHhh----hcccccccccc
Q psy16713 20 GIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSL 55 (357)
Q Consensus 20 g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~ 55 (357)
..|++++|++|+.|++++|..|+.. +..|..++..+
T Consensus 46 ~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y 85 (102)
T 2co9_A 46 GEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAY 85 (102)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999777643 56777665544
No 69
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=86.82 E-value=0.051 Score=40.88 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=25.5
Q ss_pred CccchhhhhHHHhhhcccCCCChHhh----hcccccccccc
Q psy16713 19 TGIRKKFNGKQWRRLCSKDGCSKESQ----RRGYCSRHLSL 55 (357)
Q Consensus 19 ~g~~sK~~gE~Wk~Lsa~EKk~~E~a----k~~y~se~~s~ 55 (357)
.+.++|++|+.|+.|++ |..|+.. +..|..++..+
T Consensus 31 ~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y 69 (73)
T 3nm9_A 31 VTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEF 69 (73)
T ss_dssp HHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999999999997 8666533 56676665544
No 70
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.02 E-value=0.17 Score=40.65 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=29.4
Q ss_pred cCCccccCCCccc--hhhhhHHHhhhcccCCCChHhhh
Q psy16713 10 KKGDIVTTPTGIR--KKFNGKQWRRLCSKDGCSKESQR 45 (357)
Q Consensus 10 kr~~il~~~~g~~--sK~~gE~Wk~Lsa~EKk~~E~ak 45 (357)
.|..|..+.|++- ..-++++|+.|+++||.+|+...
T Consensus 37 ~R~kik~enP~~s~~~~eIse~Wk~ls~eeK~pY~~kA 74 (90)
T 2yuk_A 37 NFPNLKEEFPDWTTRVKQIAKLWRKASSQERAPYVQKA 74 (90)
T ss_dssp HCTTHHHHCCSHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHCcCccchHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3667788889887 67777999999999998887553
No 71
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=56.43 E-value=9.4 Score=34.33 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=38.6
Q ss_pred CCCChHHHHHH-HHHHhhcCChHHHHHHHHHHHH-HHHHHHHHcccCc
Q psy16713 93 PNQDNRTVSKI-LGEWWYSLGPEEKQKYHELASE-VKEAHFKAHPEWK 138 (357)
Q Consensus 93 P~ls~~EISK~-Lge~Wk~LSeeEK~~Y~e~A~~-~Keky~ke~p~YK 138 (357)
|...+..|++. ||.-|+.+|+++|+.|.+.-.. ....|...+..|.
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66788888876 6999999999999999987666 5667888888885
No 72
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.91 E-value=90 Score=24.19 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhCCCCCh-----HHHHHHHHHHhhcCChHHHHH
Q psy16713 81 SKRHRAKVHQIHPNQDN-----RTVSKILGEWWYSLGPEEKQK 118 (357)
Q Consensus 81 ~~e~R~~ik~e~P~ls~-----~EISK~Lge~Wk~LSeeEK~~ 118 (357)
.+.+|..++.-||+... .+..+.|.+.|..|++.++..
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 46778888899999773 568889999999998776543
No 73
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=23.64 E-value=1.6e+02 Score=21.35 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCCC----hHHHHHHHHHHhhcCChHHHH
Q psy16713 81 SKRHRAKVHQIHPNQD----NRTVSKILGEWWYSLGPEEKQ 117 (357)
Q Consensus 81 ~~e~R~~ik~e~P~ls----~~EISK~Lge~Wk~LSeeEK~ 117 (357)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++.
T Consensus 21 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 21 KRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp HHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 4567777888899865 467888999999999886653
No 74
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=23.63 E-value=1.3e+02 Score=22.86 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhCCCCC--hHHHHHHHHHHhhcCChHHHHHH
Q psy16713 81 SKRHRAKVHQIHPNQD--NRTVSKILGEWWYSLGPEEKQKY 119 (357)
Q Consensus 81 ~~e~R~~ik~e~P~ls--~~EISK~Lge~Wk~LSeeEK~~Y 119 (357)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..-
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 66 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 4667788888999875 46788899999999987665443
No 75
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=23.09 E-value=1.3e+02 Score=21.79 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCCCh--HHHHHHHHHHhhcCChHHHH
Q psy16713 81 SKRHRAKVHQIHPNQDN--RTVSKILGEWWYSLGPEEKQ 117 (357)
Q Consensus 81 ~~e~R~~ik~e~P~ls~--~EISK~Lge~Wk~LSeeEK~ 117 (357)
.+.+|..++.-||+... .+..+.|.+.|..|++.++.
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 46677788888998764 47888999999999876654
No 76
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.57 E-value=1.2e+02 Score=22.25 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhCCCCCh-----HHHHHHHHHHhhcCChHHHH
Q psy16713 81 SKRHRAKVHQIHPNQDN-----RTVSKILGEWWYSLGPEEKQ 117 (357)
Q Consensus 81 ~~e~R~~ik~e~P~ls~-----~EISK~Lge~Wk~LSeeEK~ 117 (357)
.+.+|..++.-||+... .+..+.|.+.|..|++..+.
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 66 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 46677888888998664 46788899999888765543
No 77
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.11 E-value=1.4e+02 Score=23.56 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCCCh-----HHHHHHHHHHhhcCChHHHHHHHH
Q psy16713 81 SKRHRAKVHQIHPNQDN-----RTVSKILGEWWYSLGPEEKQKYHE 121 (357)
Q Consensus 81 ~~e~R~~ik~e~P~ls~-----~EISK~Lge~Wk~LSeeEK~~Y~e 121 (357)
.+.+|..++.-||+... .+..+.|.+.|..|++..+..-.+
T Consensus 35 k~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 35 KKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp HHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 46778888899999774 467889999999998766554433
Done!