RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16713
(357 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 95.3 bits (237), Expect = 3e-25
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVK 127
DR++RPMNAFM++S+ R K+ Q +P N +SK LG W L EK+ + + A ++
Sbjct: 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60
Query: 128 EAHFKAHPEWKWCSKDKRKS 147
H K HP++K+ + K K+
Sbjct: 61 ALHMKEHPDYKYRPRRKTKT 80
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 90.7 bits (225), Expect = 2e-23
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 70 IRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEA 129
I++P+NAFM++ K RA V +++ +++ILG W++L EE+ KY+ELA + ++
Sbjct: 3 IKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQL 62
Query: 130 HFKAHPEWKWCSKDKRK 146
H + +P W +K
Sbjct: 63 HMQLYPGWSARDNYGKK 79
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 89.9 bits (223), Expect = 3e-23
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 67 KDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEV 126
+DR++RPMNAF+++S+ R K+ +P N +SK LG W L EK + + A ++
Sbjct: 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61
Query: 127 KEAHFKAHPEWKWCSKDKRKS 147
+ H + +P +K+ + K K
Sbjct: 62 QAMHREKYPNYKYRPRRKAKM 82
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 87.6 bits (217), Expect = 2e-22
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKE 128
I+RPMNAFM+++K R K+ Q P+ N +SKILG W ++ EKQ Y+E + + +
Sbjct: 2 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 61
Query: 129 AHFKAHPEW 137
H + +P++
Sbjct: 62 QHLEKYPDY 70
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 80.3 bits (198), Expect = 1e-19
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 71 RRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAH 130
+RP +AF +F +R K+ HP V+K LGE W + ++KQ Y + A+++KE +
Sbjct: 4 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 63
Query: 131 FKAHPEWK 138
K ++
Sbjct: 64 EKDIAAYR 71
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 75.2 bits (185), Expect = 6e-18
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 68 DRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVK 127
D+ +RP++A+M++ R + + +P V+K GE W ++ ++K ++ A++ K
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAK 59
Query: 128 EAHFKAHPEWK 138
+ + +A E++
Sbjct: 60 DDYDRAVKEFE 70
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 74.5 bits (183), Expect = 2e-17
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 65 RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELAS 124
+ + +R ++A+M F+ +R V +P+ V K LGE W +L PEEKQ Y A
Sbjct: 16 KDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 125 EVKEAHFKAHPEWK 138
K+ + +
Sbjct: 76 ADKKRYESEKELYN 89
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 73.8 bits (181), Expect = 3e-17
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 65 RSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELAS 124
+ D ++P+ + F RAK ++HP N ++KIL + + L ++K KY +
Sbjct: 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQ 65
Query: 125 EVKEAHFKAHPEWK 138
K+ + ++
Sbjct: 66 REKQEFERNLARFR 79
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 73.8 bits (181), Expect = 4e-17
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 66 SKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASE 125
S + PMN + FS+ + H + +G W + +K+ Y +LA E
Sbjct: 5 SSGPKKPPMNGYQKFSQELLSNGELNHLP--LKERMVEIGSRWQRISQSQKEHYKKLAEE 62
Query: 126 VKEAHFKAHPEW------------KWCSKDKRKSSTGSG 152
+ + W K +KRKS SG
Sbjct: 63 QQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSGPSSG 101
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 69.2 bits (169), Expect = 1e-15
Identities = 16/70 (22%), Positives = 34/70 (48%)
Query: 63 GLRSKDRIRRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHEL 122
G ++ +RP++A IFS+ R ++ + P ++++L W L ++K KY
Sbjct: 14 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAR 73
Query: 123 ASEVKEAHFK 132
+ +K +
Sbjct: 74 EAALKAQSER 83
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 67.6 bits (165), Expect = 3e-15
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 69 RIRRPMNAFMIFSKRHRAKVHQIHPNQ--DNRTVSKILGEWWYSLGPEEKQKYHELASEV 126
+ R M+++ F + R + + HP+ + SK E W ++ +EK K+ ++A
Sbjct: 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60
Query: 127 KEAHFKAHPE 136
K + +
Sbjct: 61 KARYEREMKT 70
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 66.1 bits (161), Expect = 3e-14
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 71 RRPMNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEKQKYHELASEVKEAH 130
+ P N++ ++ A + + + + + W L +EK YH+ + K+ +
Sbjct: 19 KPPPNSYSLYCAELMANMKDVPSTE----RMVLCSQQWKLLSQKEKDAYHKKCDQKKKDY 74
Query: 131 FKAHPEWKWCSKDKRKSSTGSGRGKLGSMDEGTG 164
+ ++ + L +G
Sbjct: 75 EVELLRFLESLPEEEQQRVLGEEKMLNISGPSSG 108
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 245
Score = 27.5 bits (61), Expect = 2.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 272 QQQQQQVHQQQQQNSSQPSQNHQEQRHMDSG 302
++ QQQ ++ ++ Q +HQ+ RH + G
Sbjct: 84 EKPQQQSSRRGSRSQQQLQDSHQKIRHFNEG 114
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 28.1 bits (61), Expect = 2.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 52 HLSLKGAGSATGLRSKDRIRRPM 74
+KG + + +DR+ P+
Sbjct: 41 LNCVKGYFLSKIMYGEDRLTTPL 63
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.8 bits (59), Expect = 2.5
Identities = 9/60 (15%), Positives = 27/60 (45%)
Query: 232 KQSNIEMQNASVAAANAELMQQADKNKDSEQQKYRNFNLSQQQQQQVHQQQQQNSSQPSQ 291
KQ + + +++A++ +S + +Y + ++ +++ Q++ Q Q Q
Sbjct: 75 KQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 134
>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha
chain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 597
Score = 27.7 bits (60), Expect = 2.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 52 HLSLKGAGSATGLRSKDRIRRPM 74
L LKG+ L SK+R+ +P+
Sbjct: 42 LLCLKGSLLIPVLNSKERVTQPL 64
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
subtilis [TaxId: 1423]}
Length = 372
Score = 27.3 bits (60), Expect = 2.7
Identities = 7/54 (12%), Positives = 22/54 (40%)
Query: 266 RNFNLSQQQQQQVHQQQQQNSSQPSQNHQEQRHMDSGAPNVPYQRSHEMDTSEP 319
NF +++++ + +++ + ++ VPY ++ + EP
Sbjct: 175 ANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEP 228
>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean
(Glycine max), proglycinin [TaxId: 3847]}
Length = 239
Score = 27.2 bits (60), Expect = 2.8
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 262 QQKYRNFNLS---QQQQQQVHQQQQQNSSQPSQNHQEQR 297
Q R F L+ +Q+ + Q+Q + SQ ++ QE+
Sbjct: 148 DQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEE 186
Score = 26.4 bits (58), Expect = 5.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 272 QQQQQQVHQQQQQNSSQPSQNHQEQRHMDSG 302
++ QQ+ SS+P HQ+ + G
Sbjct: 81 STFEEPQQPQQRGQSSRPQDRHQKIYNFREG 111
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 26.6 bits (58), Expect = 5.1
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 58 AGSATGLRSKDRIRRP-MNAFMIFSKRHRAKVHQIHPNQDNRTVSKILGEWWYSLGPEEK 116
+G S++ R A + R V +H + W Y L +E
Sbjct: 185 SGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEY 244
Query: 117 -------QKYHELASEV-KEAHFKAHPEWKW 139
+Y +A E K+A KA E +
Sbjct: 245 GDKVFTWAQYDRIAEEQGKDAANKAQSEAEA 275
>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL
{Pelobacter acidigallici [TaxId: 35816]}
Length = 728
Score = 26.6 bits (57), Expect = 5.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 52 HLSLKGAGSATGLRSKDRIRRPM 74
++ AG + + S RI PM
Sbjct: 58 SIAPYTAGFKSMIYSDLRIPYPM 80
>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate
dehydrogenase, large subunit {Desulfovibrio gigas
[TaxId: 879]}
Length = 812
Score = 26.7 bits (58), Expect = 5.5
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 52 HLSLKGAGSATGLRSKDRIRRPM 74
L KGA + ++ R P+
Sbjct: 52 SLCAKGASTWQLAENERRPANPL 74
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha
subunit {Escherichia coli [TaxId: 562]}
Length = 817
Score = 26.4 bits (57), Expect = 6.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 52 HLSLKGAGSATGLRSKDRIRRPM 74
L KGAG + S++R+R P
Sbjct: 57 ALCPKGAGLLDYVNSENRLRYPE 79
>g1as4.1 e.1.1.1 (A:,B:) Antichymotrypsin, alpha-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 369
Score = 26.0 bits (56), Expect = 9.0
Identities = 16/69 (23%), Positives = 29/69 (42%)
Query: 231 SKQSNIEMQNASVAAANAELMQQADKNKDSEQQKYRNFNLSQQQQQQVHQQQQQNSSQPS 290
+ N+ S++ A A L A +E K FNL++ + ++HQ Q +
Sbjct: 21 APDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTETSEAEIHQSFQHLLRTLN 80
Query: 291 QNHQEQRHM 299
Q+ E +
Sbjct: 81 QSSDELQLS 89
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 24.9 bits (54), Expect = 9.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 274 QQQQVHQQQQQNSSQPSQNHQEQR 297
QQ ++ Q Q QP+ + Q Q
Sbjct: 28 PQQHLNAQPQVTMQQPAVHVQGQE 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.125 0.366
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,246,695
Number of extensions: 54425
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 37
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)