BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16714
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17
(Rgsz2)
Length = 158
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 50/56 (89%)
Query: 13 AGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
AGR LFREFLR EYSEEN+LFWLACEDLKKE N VIEEKAR IYEDYISILSPKE
Sbjct: 45 AGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPKE 100
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein):
A Regulator Of G Protein Signaling
Length = 152
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 49/56 (87%)
Query: 13 AGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
AGR +FR FLR EYSEEN+LFWLACE+LK E+N V++EKAR IYEDY+SILSPKE
Sbjct: 32 AGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKE 87
>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit
Alpha ( Gnai3) In Complex With An Engineered Regulator
Of G- Protein Signaling Type 2 Domain (Rgs2)
Length = 142
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 38/57 (66%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
K G FR FL+ E+SEENI FWLACED KK +P + KAR IY D+I +PKE
Sbjct: 24 KYGLAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 80
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 37/57 (64%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
K G FR FL+ E+ EENI FWLACED KK +P + KAR IY D+I +PKE
Sbjct: 34 KYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 90
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 37/57 (64%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
K G FR FL+ E+ EENI FWLACED KK +P + KAR IY D+I +PKE
Sbjct: 25 KYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 81
>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
pdb|2OWI|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
Length = 151
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 10 TFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
+ + G + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKE
Sbjct: 20 SHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKE 78
>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator
Of G-Protein Signaling 18
Length = 140
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 10 TFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
+ + G + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKE
Sbjct: 24 SHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKE 82
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signalling 5 (Rgs 5)
Length = 150
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
G F+ FL+ E+SEEN+ FW+ACED KK +P + EKA+ IYE++I +PKE
Sbjct: 38 GLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIYEEFIQTEAPKE 92
>pdb|2IHB|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 153
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYIS 62
G K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S
Sbjct: 44 GVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLS 92
>pdb|2I59|A Chain A, Solution Structure Of Rgs10
Length = 138
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYIS 62
G K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S
Sbjct: 24 GVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLS 72
>pdb|2DLR|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator
Of G-Protein Signaling 10
Length = 149
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYIS 62
G K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S
Sbjct: 28 GVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLS 76
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
G F+ FL+ EYSEENI FW++CE+ KK +P + KA+ IY ++IS+ + KE
Sbjct: 72 GLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKE 126
>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain
Length = 127
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
K G +F+ FLR E+SEEN+ FWLACED KK + + KA+ I+ +YI+I + KE
Sbjct: 18 KYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKE 74
>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
pdb|1EZY|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
Length = 166
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
G F+ FL+ EYSEENI FW++CE+ KK +P + KA+ IY ++IS+ + KE
Sbjct: 26 GLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKE 80
>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
Length = 141
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 10 TFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
+ K G FR FL+ E+SEEN+ FWLACE+ KK + + KA I+E+++ + +P+E
Sbjct: 23 SHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPRE 81
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein
Signaling 8, Rgs8
Length = 155
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 10 TFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
+ K G FR FL+ E+SEEN+ FWLACE+ KK + + KA I+E+++ + +P+E
Sbjct: 44 SHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPRE 102
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural
Basis For Rgs16-Mediated Deactivation
pdb|3C7L|B Chain B, Molecular Architecture Of Galphao And The Structural
Basis For Rgs16-Mediated Deactivation
Length = 137
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
K G F FL+ E+SEEN+ FWLACE+ KK + + +A I+++YI +PKE
Sbjct: 29 KNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKE 85
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural
Basis For Rgs16-Mediated Deactivation
pdb|3C7K|D Chain D, Molecular Architecture Of Galphao And The Structural
Basis For Rgs16-Mediated Deactivation
Length = 129
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
K G F FL+ E+SEEN+ FWLACE+ KK + + +A I+++YI +PKE
Sbjct: 21 KNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKE 77
>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|B Chain B, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|C Chain C, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|D Chain D, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|E Chain E, Structure Of The Regulator Of G-Protein Signaling 16
Length = 161
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
K G F FL+ E+SEEN+ FWLACE+ KK + + +A I+E++I +PKE
Sbjct: 44 KNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICSEAPKE 100
>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 140
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
K G F FL+ E+SEEN+ FWLACE+ KK + + +A I+E++I +PKE
Sbjct: 23 KNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICSEAPKE 79
>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human)
pdb|2BV1|B Chain B, Regulator Of G-Protein Signalling 1 (Human)
pdb|2GTP|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 145
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
+ G+ +F FL+ E+SEENI FWLACED KK + D++ KA IY+ ++ + K+
Sbjct: 33 QTGQNVFGSFLKSEFSEENIEFWLACEDYKK-TESDLLPCKAEEIYKAFVHSDAAKQ 88
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The
Rgs Domain Of Rgs9, The Gamma Subunit Of
Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The
Rgs Domain Of Rgs9, The Gamma Subunit Of
Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The
Rgs Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The
Rgs Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYIS 62
GR+ F+ FLR E+S EN+ FW ACEDL K + ++EKA IY+ +++
Sbjct: 34 GRQSFQHFLRKEFSGENLGFWEACEDL-KYGDQSKVKEKAEEIYKLFLA 81
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYIS 62
GR+ F+ FLR E+S EN+ FW ACEDL K + ++EKA IY+ +++
Sbjct: 34 GRQSFQHFLRKEFSGENLGFWEACEDL-KYGDQSKVKEKAEEIYKLFLA 81
>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs6
Length = 148
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSP 66
+ GR F FL E+S EN+ FWLA +DLKK+ DV ++ I++++++ +P
Sbjct: 22 QVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVA-KRVEEIWQEFLAPGAP 75
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|C Chain C, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 424
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYIS 62
GR+ F+ FL+ E+S EN+ FW ACEDLK V +EKA IY+ +++
Sbjct: 311 GRQSFQYFLKKEFSGENLGFWEACEDLKYGDQSKV-KEKAEEIYKLFLA 358
>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14
Length = 154
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKK--ESNPDVIEEKARFIYEDYIS--ILSP 66
G F EFL+ E+S EN+ FW ACE ++ S+ + ++AR IY++++S LSP
Sbjct: 24 GLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFLSSQALSP 80
>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
pdb|2A72|B Chain B, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
Length = 146
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSP 66
GR+ F +FL E+S EN+ FWLA EDLKK +V + + I++++++ +P
Sbjct: 26 GREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEV-PSRVQEIWQEFLAPGAP 77
>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signaling 7
Length = 139
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSP 66
GR+ F +FL E+S EN+ FWLA EDLKK +V + + I++++++ +P
Sbjct: 28 GREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEV-PSRVQEIWQEFLAPGAP 79
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human
Regulator Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 14 GRKLFREFLRCEYSEENILFWLACE 38
G + F +FLR E+SEENILFW ACE
Sbjct: 28 GVRYFSDFLRKEFSEENILFWQACE 52
>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
Length = 147
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEK----ARFIYEDYI 61
G LFR FL+ E + + FW AC +K D EEK AR IY YI
Sbjct: 25 GISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYI 76
>pdb|1EMU|A Chain A, Structure Of The Axin Rgs-Homologous Domain In Complex
With A Samp Repeat From Apc
Length = 132
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 14 GRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEK----ARFIYEDYI 61
G LFR FL+ E + + FW AC +K D EEK AR IY YI
Sbjct: 19 GISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYI 70
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 19 REFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSP 66
R + EY+ + + + KK+ PD+ E RF+ ++ +++P
Sbjct: 288 RNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAP 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,017,326
Number of Sequences: 62578
Number of extensions: 64729
Number of successful extensions: 170
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 32
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)