Query psy16714
Match_columns 68
No_of_seqs 105 out of 549
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 20:08:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oj4_A RGS3, regulator of G-pr 99.9 4.4E-22 1.5E-26 118.6 8.6 61 8-68 14-74 (127)
2 3c7l_A Regulator of G-protein 99.9 8.6E-22 2.9E-26 119.3 8.1 61 8-68 25-85 (137)
3 2dlv_A RGS18, regulator of G-p 99.9 8.8E-22 3E-26 119.1 7.5 61 8-68 22-82 (140)
4 2af0_A Regulator of G-protein 99.9 1.7E-21 5.8E-26 118.8 8.6 61 8-68 30-90 (146)
5 2ihd_A RGS8, regulator of G-pr 99.9 2.4E-21 8.1E-26 119.8 8.3 61 8-68 42-102 (155)
6 2jm5_A RGS18, regulator of G-p 99.9 2.2E-21 7.4E-26 119.2 8.0 61 8-68 18-78 (151)
7 1zv4_X RGS17, regulator of G-p 99.9 2.5E-21 8.7E-26 120.0 8.3 61 8-68 40-100 (158)
8 2crp_A RGS5, regulator of G-pr 99.9 2.6E-21 8.8E-26 118.6 8.2 61 8-68 32-92 (150)
9 2ihb_B Regulator of G-protein 99.9 3.3E-21 1.1E-25 118.5 8.6 61 8-68 38-98 (153)
10 2dlr_A RGS10, regulator of G-p 99.9 2E-21 6.7E-26 119.0 7.3 61 8-68 22-82 (149)
11 1cmz_A Protein (GAIP (G-alpha 99.8 2.9E-21 1E-25 118.4 7.6 61 8-68 27-87 (152)
12 2ebz_A RGS12, regulator of G-p 99.8 6.7E-21 2.3E-25 117.4 8.6 61 8-68 22-84 (155)
13 2bv1_A Regulator of G-protein 99.8 5.6E-21 1.9E-25 116.5 7.9 60 8-68 29-88 (145)
14 2jnu_A RGS14, regulator of G-p 99.8 4.5E-21 1.5E-25 118.0 7.5 61 8-68 18-80 (154)
15 2a72_A Regulator of G-protein 99.8 1E-20 3.4E-25 115.5 7.8 60 8-68 20-79 (146)
16 1fqi_A RGS9, regulator of G-pr 99.8 1E-20 3.6E-25 115.7 7.8 60 8-68 28-87 (147)
17 1dk8_A Axin; alpha-helix, PI-h 99.8 4.7E-21 1.6E-25 116.7 6.1 61 8-68 19-84 (147)
18 1agr_E RGS4; GI-alpha-1, hydro 99.8 3.2E-20 1.1E-24 119.7 7.5 61 8-68 66-126 (205)
19 2pbi_A Regulator of G-protein 99.7 1.9E-18 6.4E-23 121.3 6.6 63 4-68 302-364 (424)
20 3cx8_B RHO guanine nucleotide 98.3 1.8E-06 6E-11 55.8 6.8 63 3-67 25-87 (203)
21 1iap_A Guanine nucleotide exch 98.2 1E-05 3.4E-10 52.5 7.4 63 3-67 7-69 (211)
22 3ab3_B RHO guanine nucleotide 97.8 1.1E-05 3.6E-10 53.3 2.4 58 9-67 66-123 (246)
23 2acx_A G protein-coupled recep 97.5 0.00039 1.3E-08 50.0 7.0 58 9-67 58-116 (576)
24 3v5w_A G-protein coupled recep 97.2 0.00063 2.2E-08 50.2 6.0 55 10-64 60-116 (689)
25 4gou_A EHRGS-rhogef; RGS domai 96.2 0.045 1.5E-06 37.6 8.7 59 9-67 20-81 (518)
26 3c4z_A Rhodopsin kinase; Ser/T 92.6 0.45 1.5E-05 33.8 6.8 57 9-66 63-120 (543)
27 2b4j_C PC4 and SFRS1 interacti 62.1 8.5 0.00029 21.9 3.0 17 46-62 65-81 (98)
28 4gud_A Imidazole glycerol phos 47.5 10 0.00034 23.0 1.9 21 11-33 190-210 (211)
29 1m5q_A SMAP3, small nuclear ri 45.1 13 0.00045 21.9 2.0 18 48-65 113-130 (130)
30 1z9e_A PC4 and SFRS1 interacti 41.8 15 0.00052 21.8 2.0 15 47-61 66-80 (127)
31 3bej_E Nuclear receptor coacti 38.2 27 0.00093 15.0 2.6 20 49-68 7-26 (26)
32 1q2z_A ATP-dependent DNA helic 32.4 61 0.0021 18.4 3.6 30 10-39 61-91 (120)
33 3c9q_A Uncharacterized protein 28.6 24 0.00082 22.5 1.4 17 25-43 26-42 (205)
34 3fiq_A OBP1, RCG36470, odorant 27.9 38 0.0013 19.6 2.2 24 10-33 124-148 (157)
35 2g31_A Reticulon-4; NOGO, heli 27.3 36 0.0012 17.3 1.7 21 1-26 7-27 (60)
36 3kb4_A ALR8543 protein; alpha- 23.2 48 0.0017 21.1 2.1 17 3-19 46-62 (225)
37 4ato_A TOXN; HET: A23; 2.20A { 21.7 95 0.0032 19.4 3.2 22 46-67 125-146 (194)
No 1
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=99.87 E-value=4.4e-22 Score=118.56 Aligned_cols=61 Identities=46% Similarity=0.766 Sum_probs=57.9
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||.+|++||...+...+...|..||++||+++||+|
T Consensus 14 iL~~~~g~~~F~~Fl~~e~~~enl~Fw~~ve~~k~~~~~~~~~~~a~~I~~~yi~~~s~~e 74 (127)
T 2oj4_A 14 LLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKE 74 (127)
T ss_dssp HHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTC
T ss_pred HHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCCCCcC
Confidence 5699999999999999999999999999999999987777899999999999999999986
No 2
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=99.86 E-value=8.6e-22 Score=119.35 Aligned_cols=61 Identities=41% Similarity=0.749 Sum_probs=58.1
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|++||++++|+|||.||++|++||...+...+...|..||++||+++||+|
T Consensus 25 iL~~p~g~~~F~~Fl~~e~s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~e 85 (137)
T 3c7l_A 25 LLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKE 85 (137)
T ss_dssp HTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTC
T ss_pred HHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCCcc
Confidence 5699999999999999999999999999999999998777899999999999999999986
No 3
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=8.8e-22 Score=119.15 Aligned_cols=61 Identities=48% Similarity=0.833 Sum_probs=57.6
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|++||++++|+|||.||++|++||...+...+...|+.||++||+++||+|
T Consensus 22 iL~~~~~~~~F~~Fl~~e~s~enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~e 82 (140)
T 2dlv_A 22 LLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKE 82 (140)
T ss_dssp HHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSSTTC
T ss_pred HHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCccc
Confidence 4599999999999999999999999999999999988667889999999999999999986
No 4
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=99.86 E-value=1.7e-21 Score=118.84 Aligned_cols=61 Identities=51% Similarity=0.835 Sum_probs=57.8
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||++|++||...+...+...|..||++||+++||+|
T Consensus 30 iL~~p~g~~~F~~Fl~~e~s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~e 90 (146)
T 2af0_A 30 LLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 90 (146)
T ss_dssp HHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSTTCTTC
T ss_pred HHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCcCCCCcc
Confidence 4599999999999999999999999999999999998777899999999999999999986
No 5
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=99.85 E-value=2.4e-21 Score=119.77 Aligned_cols=61 Identities=41% Similarity=0.788 Sum_probs=57.9
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||++|++||...+..++...|..||++||+++||+|
T Consensus 42 iL~dp~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~e 102 (155)
T 2ihd_A 42 LLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPRE 102 (155)
T ss_dssp HHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTC
T ss_pred HHCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCcCCCccc
Confidence 4599999999999999999999999999999999998777899999999999999999986
No 6
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=99.85 E-value=2.2e-21 Score=119.18 Aligned_cols=61 Identities=48% Similarity=0.833 Sum_probs=57.9
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|.||.|+..|+.||++++|+|||.||++|++||...+...+...|..||++||+++||+|
T Consensus 18 iL~~p~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~e 78 (151)
T 2jm5_A 18 LLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKE 78 (151)
T ss_dssp HHHSHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTTCSSSSSC
T ss_pred HHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHccCcchhh
Confidence 4599999999999999999999999999999999998777899999999999999999986
No 7
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=120.05 Aligned_cols=61 Identities=80% Similarity=1.223 Sum_probs=56.9
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||++|++||...+...+...|..||++||+++||+|
T Consensus 40 iL~dp~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~e 100 (158)
T 1zv4_X 40 MMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPKE 100 (158)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTCCC-CCC
T ss_pred HhCCHHHHHHHHHHHHHccCHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCCCCCce
Confidence 4699999999999999999999999999999999998777889999999999999999986
No 8
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=118.61 Aligned_cols=61 Identities=46% Similarity=0.795 Sum_probs=57.5
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||++|++||...+..++...|..||++||+++||+|
T Consensus 32 iL~~~~g~~~F~~Fl~~e~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~e 92 (150)
T 2crp_A 32 LLQNNYGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIYEEFIQTEAPKE 92 (150)
T ss_dssp HHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHTSSTTCSSC
T ss_pred HHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHccCCCCcc
Confidence 4599999999999999999999999999999999988666889999999999999999986
No 9
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=99.85 E-value=3.3e-21 Score=118.53 Aligned_cols=61 Identities=46% Similarity=0.743 Sum_probs=58.0
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|++||++++|+|||.||++|++||...+...+...|..||++||+++||+|
T Consensus 38 iL~dp~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~e 98 (153)
T 2ihb_B 38 LLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQ 98 (153)
T ss_dssp HHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSTTCTTC
T ss_pred HHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 4699999999999999999999999999999999998877899999999999999999986
No 10
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=119.02 Aligned_cols=61 Identities=46% Similarity=0.743 Sum_probs=58.1
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|++||++++|.|||.||++|++||...+..++...|+.||++||.++||+|
T Consensus 22 iL~~~~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~e 82 (149)
T 2dlr_A 22 LLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQ 82 (149)
T ss_dssp HHHSHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTTSSTTCSSC
T ss_pred HHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 4699999999999999999999999999999999998777899999999999999999986
No 11
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=99.85 E-value=2.9e-21 Score=118.45 Aligned_cols=61 Identities=69% Similarity=1.142 Sum_probs=57.5
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||++|++||...+...+...|+.||++||+++||+|
T Consensus 27 iL~~p~~~~~F~~Fl~~e~s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~e 87 (152)
T 1cmz_A 27 LMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKE 87 (152)
T ss_dssp HHSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHTTTCSSSCC
T ss_pred HHCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCce
Confidence 4699999999999999999999999999999999987667889999999999999999986
No 12
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=6.7e-21 Score=117.39 Aligned_cols=61 Identities=33% Similarity=0.584 Sum_probs=56.1
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKES--NPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~--~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||++|++||... +..++...|..||++||+++||+|
T Consensus 22 iL~~p~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk~~~~~~~~~~~~~a~~Iy~~yi~~~s~~e 84 (155)
T 2ebz_A 22 LLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLCSKATTP 84 (155)
T ss_dssp HHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHSSSSCSSC
T ss_pred HHCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHcCCCCCCc
Confidence 4599999999999999999999999999999999974 345788999999999999999986
No 13
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=99.84 E-value=5.6e-21 Score=116.53 Aligned_cols=60 Identities=40% Similarity=0.704 Sum_probs=56.0
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||.+|++||...+. ++...|..||++||+++||+|
T Consensus 29 iL~~p~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk~~~~~-~~~~~a~~Iy~~yi~~~s~~e 88 (145)
T 2bv1_A 29 LLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKKTESD-LLPCKAEEIYKAFVHSDAAKQ 88 (145)
T ss_dssp HHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSCGG-GHHHHHHHHHHHHTSTTCTTC
T ss_pred HHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHCCCCCCcc
Confidence 459999999999999999999999999999999998754 588999999999999999986
No 14
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.84 E-value=4.5e-21 Score=118.05 Aligned_cols=61 Identities=31% Similarity=0.564 Sum_probs=56.2
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESN--PDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~--~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|++||++++|+|||.||++|++||+..+ ...+...|..||++||+++||+|
T Consensus 18 iL~dp~g~~~F~~FL~~e~~~Enl~Fw~~ve~~k~~~~~~~~~~~~~a~~Iy~~yi~~~s~~e 80 (154)
T 2jnu_A 18 LLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFLSSQALSP 80 (154)
T ss_dssp HHHSHHHHHHHHHHTTTSSCTHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHTSTTCSSC
T ss_pred HHCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHcCCCCCcc
Confidence 45999999999999999999999999999999999764 45788999999999999999986
No 15
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A
Probab=99.83 E-value=1e-20 Score=115.52 Aligned_cols=60 Identities=33% Similarity=0.603 Sum_probs=55.7
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||++|++||.... .++...|..||++||+++||+|
T Consensus 20 iL~~p~g~~~F~~Fl~~e~~~Enl~Fw~~ve~~k~~~~-~~~~~~a~~Iy~~yi~~~s~~e 79 (146)
T 2a72_A 20 ALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPI-KEVPSRVQEIWQEFLAPGAPSA 79 (146)
T ss_dssp HHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTSCG-GGHHHHHHHHHHHHTSTTCTTC
T ss_pred HhCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHcCCCCccc
Confidence 45999999999999999999999999999999999864 4678999999999999999986
No 16
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=99.83 E-value=1e-20 Score=115.68 Aligned_cols=60 Identities=38% Similarity=0.563 Sum_probs=55.8
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||.+|++||... ...+...|..||++||+++||+|
T Consensus 28 iL~~p~g~~~F~~FL~~e~~~enl~Fw~~ve~~k~~~-~~~~~~~a~~Iy~~yi~~~s~~e 87 (147)
T 1fqi_A 28 LIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGD-QSKVKEKAEEIYKLFLAPGARRW 87 (147)
T ss_dssp HHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHTSTTCTTC
T ss_pred HHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCCCcc
Confidence 3599999999999999999999999999999999976 45688999999999999999986
No 17
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Probab=99.83 E-value=4.7e-21 Score=116.70 Aligned_cols=61 Identities=33% Similarity=0.459 Sum_probs=56.0
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhc-CCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKE----SNPDVIEEKARFIYEDYI-SILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~----~~~~~~~~~a~~Iy~~fi-~~~sp~E 68 (68)
+|+||.|+..|+.||++++|+|||.||++|++||.. .+...+...|+.||++|| .++||+|
T Consensus 19 iL~~p~g~~~F~~FL~~e~~~enl~Fw~~ve~~k~~~~~~~~~~~~~~~a~~Iy~~yi~~~~s~~~ 84 (147)
T 1dk8_A 19 LLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIVS 84 (147)
T ss_dssp HTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHTSCTTSHHH
T ss_pred HHCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHhCCccCCCC
Confidence 469999999999999999999999999999999998 445578999999999999 9999864
No 18
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=99.82 E-value=3.2e-20 Score=119.74 Aligned_cols=61 Identities=43% Similarity=0.796 Sum_probs=57.1
Q ss_pred HhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 8 ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
+|+||.|+..|++||++++|+|||.||++|++||...+..++...|..||++||+++||+|
T Consensus 66 IL~dp~g~~~F~~FL~~e~s~EnL~Fw~ave~yk~~~~~~~~~~~A~~Iy~~YI~~~Sp~e 126 (205)
T 1agr_E 66 LINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKE 126 (205)
T ss_dssp HHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHCCCTTTHHHHHHHHHHHHTSTTCTTC
T ss_pred HhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCchh
Confidence 4699999999999999999999999999999999987556789999999999999999986
No 19
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.75 E-value=1.9e-18 Score=121.29 Aligned_cols=63 Identities=35% Similarity=0.527 Sum_probs=57.0
Q ss_pred HHHHHhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q psy16714 4 IKRTRNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 4 ~~~~ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~E 68 (68)
++.+ |.||.|+..|+.||++++|+|||.||++|++||...+ ..+...|..||++||+++||+|
T Consensus 302 le~L-L~dp~g~~~F~~FL~~e~s~EnL~Fwlave~fk~~~~-~~~~~~A~~Iy~~YI~~~Sp~e 364 (424)
T 2pbi_A 302 FSEL-IRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYGDQ-SKVKEKAEEIYKLFLAPGARRW 364 (424)
T ss_dssp HHHH-HHSHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHSCS-SSHHHHHHHHHHHHTSTTCTTC
T ss_pred HHHH-HCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCCccc
Confidence 3444 6999999999999999999999999999999999754 4688999999999999999986
No 20
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=98.33 E-value=1.8e-06 Score=55.77 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=56.3
Q ss_pred HHHHHHhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCC
Q psy16714 3 CIKRTRNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67 (68)
Q Consensus 3 ~~~~~ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~ 67 (68)
.++.+. ..|.....|.+|+-..+.-.-|+|++-++-|+..+. +++.+.|.+||.+||.++||.
T Consensus 25 sle~Lk-~rPAHLavFL~yvlsq~dP~~LlfyL~~d~yk~~~~-Ke~rk~a~ei~stFL~~~ApL 87 (203)
T 3cx8_B 25 DLEKLK-SHPAYLVVFLRYILSQADPGPLLFYLCSEVYQQTNP-KDSRSLGKDIWNIFLEKNAPL 87 (203)
T ss_dssp CHHHHH-TCHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHTSCT-TTCHHHHHHHHHHHTSTTCTT
T ss_pred CHHHHh-cCcHHHHHHHHHHHhcCCchHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHhcCCCCc
Confidence 344444 899999999999999999999999999999999874 578999999999999999996
No 21
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=98.15 E-value=1e-05 Score=52.47 Aligned_cols=63 Identities=10% Similarity=0.136 Sum_probs=56.6
Q ss_pred HHHHHHhhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCC
Q psy16714 3 CIKRTRNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67 (68)
Q Consensus 3 ~~~~~ll~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~ 67 (68)
.++.+. .-|.....|.+|+-.++.-.-|+|++-.+=|+..+ ..++.+.|.+||.+||-++||.
T Consensus 7 sl~~Lk-~rPAHLaVFL~yV~sq~DPspLLfYL~tdlYk~~~-~Ke~rk~~~Ei~stFL~~~ApL 69 (211)
T 1iap_A 7 SLEQVK-RRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLG-PKEAKKAFLDFYHSFLEKTAVL 69 (211)
T ss_dssp CHHHHT-TCHHHHHHHHHHHHHHSCSHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHTSTTCTT
T ss_pred CHHHHh-hccHHHHHHHHHHHHcCCchhhHHHHHHHHHhccC-hHHHHHHHHHHHHHHhCCCCCc
Confidence 344444 89999999999999999999999999999999987 5689999999999999999995
No 22
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=97.78 E-value=1.1e-05 Score=53.32 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=48.5
Q ss_pred hhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCC
Q psy16714 9 NTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67 (68)
Q Consensus 9 l~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~ 67 (68)
..-|..+..|.+|+-.++.-.-|+|++-.+=||.... +++++.|.+||.+||-++||.
T Consensus 66 k~rPAHLaVFL~yV~sq~DPspLLfYL~tdlYk~~~~-Ke~Rk~a~Ei~stFL~~~ApL 123 (246)
T 3ab3_B 66 KRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGP-KEAKKAFLDFYHSFLEKTAVL 123 (246)
T ss_dssp TTCHHHHHHHHHHHHHHSCSHHHHHHHHHHHHC--------CCTTHHHHHHTTSTTCTT
T ss_pred hccchHHHHHHHHHHhcCCchhhHHHHHHHHHhccCh-HHHHHHHHHHHHHHcCCCCCc
Confidence 3889999999999999999999999999999999874 589999999999999999995
No 23
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=97.45 E-value=0.00039 Score=50.00 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=48.3
Q ss_pred hhChHHHHHHHHHHHhh-cchhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCCC
Q psy16714 9 NTFKAGRKLFREFLRCE-YSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67 (68)
Q Consensus 9 l~dp~g~~~F~~FL~~e-~s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp~ 67 (68)
...|.|+..|++||... .-..-+.||.+|++|....+ +.....|..|+.+|+.+.++.
T Consensus 58 ~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 116 (576)
T 2acx_A 58 ERNPIGRLLFREFCATRPELSRCVAFLDGVAEYEVTPD-DKRKACGRNLTQNFLSHTGPD 116 (576)
T ss_dssp TTSHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHTSCT-TTHHHHHHHHHHHHSCSSSCC
T ss_pred ccCchhHHHHHHHHhcCcchhHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHhcCccccc
Confidence 36799999999999954 33345799999999999765 467899999999999998863
No 24
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=97.23 E-value=0.00063 Score=50.25 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=45.8
Q ss_pred hChHHHHHHHHHHHhhc--chhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Q psy16714 10 TFKAGRKLFREFLRCEY--SEENILFWLACEDLKKESNPDVIEEKARFIYEDYISIL 64 (68)
Q Consensus 10 ~dp~g~~~F~~FL~~e~--s~Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~ 64 (68)
.-|.|+..|++|+.+.- .-.-+.||.+|++|....+.+.....++.||++||.+.
T Consensus 60 ~q~ig~~~f~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~~~i~~~~~~~~ 116 (689)
T 3v5w_A 60 SQKLGYLLFRDFCLNHLEEARPLVEFYEEIKKYEKLETEEERVARSREIFDSYIMKE 116 (689)
T ss_dssp TSHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTSHHHHH
T ss_pred CccHHHHHHHHHhcCcchhhhHHHHHHHHHHhhhccCchhhHHHHHHHHHHHhcchh
Confidence 47999999999986543 33458999999999988777788899999999998654
No 25
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=96.21 E-value=0.045 Score=37.60 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=46.3
Q ss_pred hhChHHHHHHHHHHHhhcchhHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHhcCCCCCC
Q psy16714 9 NTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESN---PDVIEEKARFIYEDYISILSPK 67 (68)
Q Consensus 9 l~dp~g~~~F~~FL~~e~s~Enl~Fw~ave~~k~~~~---~~~~~~~a~~Iy~~fi~~~sp~ 67 (68)
|.|.......+-||.+|-|+||++|...|--|.+..+ +........-|-+.|+.-||.+
T Consensus 20 ledsfmkrllrcylsderseenldflesvglyesqfdkltpkvrlealnfikdqfldrnser 81 (518)
T 4gou_A 20 LEDSFMKRLLRCYLSDERSEENLDFLESVGLYESQFDKLTPKVRLEALNFIKDQFLDRNSER 81 (518)
T ss_dssp HHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSTTCTT
T ss_pred HHHHHHHHHHHHHcccccchhhhhHHHhccchHhhhhhcCchhhHHHHHhHHHHhhcccchh
Confidence 4899999999999999999999999999986554422 3344555667888888888754
No 26
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=92.62 E-value=0.45 Score=33.76 Aligned_cols=57 Identities=21% Similarity=0.414 Sum_probs=45.9
Q ss_pred hhChHHHHHHHHHHHhhcch-hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCCC
Q psy16714 9 NTFKAGRKLFREFLRCEYSE-ENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSP 66 (68)
Q Consensus 9 l~dp~g~~~F~~FL~~e~s~-Enl~Fw~ave~~k~~~~~~~~~~~a~~Iy~~fi~~~sp 66 (68)
++.|.|...|++||...+.- .-..||..++++....+ ....+.|+.|++.++.+++.
T Consensus 63 ~~~~ig~~~~~~f~~t~~~~~~~~~~~~~i~e~~~~~~-~~~~~~~~~l~~~~~~~~~~ 120 (543)
T 3c4z_A 63 LEQPIGKRLFQQFLRTHEQHGPALQLWKDIEDYDTADD-ALRPQKAQALRAAYLEPQAQ 120 (543)
T ss_dssp TSSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTSCT-TTHHHHHHHHHHHHTSTTCT
T ss_pred ccCcccHHHHHHHHhcCCchhHHHHHHhhhhhhccCch-hhHHHHHHHHHHHhhCchhh
Confidence 46788999999999976322 33579999999998654 35788999999999999874
No 27
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=62.08 E-value=8.5 Score=21.86 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy16714 46 PDVIEEKARFIYEDYIS 62 (68)
Q Consensus 46 ~~~~~~~a~~Iy~~fi~ 62 (68)
...+.++|..||++|-+
T Consensus 65 ~q~Ir~kA~~iY~kfK~ 81 (98)
T 2b4j_C 65 SQVIMEKSTMLYNKFKN 81 (98)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46899999999999854
No 28
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=47.48 E-value=10 Score=22.96 Aligned_cols=21 Identities=43% Similarity=0.738 Sum_probs=11.3
Q ss_pred ChHHHHHHHHHHHhhcchhHHHH
Q psy16714 11 FKAGRKLFREFLRCEYSEENILF 33 (68)
Q Consensus 11 dp~g~~~F~~FL~~e~s~Enl~F 33 (68)
.+.|...|+.||+ .|.||+.|
T Consensus 190 ~~~G~~ll~nFl~--~~ge~~~~ 210 (211)
T 4gud_A 190 SKAGARLIQNFLE--LRGENLYF 210 (211)
T ss_dssp HHHHHHHHHHHHH--C-------
T ss_pred CccHHHHHHHHHH--Hhcccccc
Confidence 3578999999994 78888766
No 29
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=45.14 E-value=13 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcCCCC
Q psy16714 48 VIEEKARFIYEDYISILS 65 (68)
Q Consensus 48 ~~~~~a~~Iy~~fi~~~s 65 (68)
-+.+++++||++||...|
T Consensus 113 ~~a~r~~~~~~~~~~~~~ 130 (130)
T 1m5q_A 113 PVAERAKRLFEEFLKRYS 130 (130)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 468999999999998654
No 30
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=41.76 E-value=15 Score=21.77 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhc
Q psy16714 47 DVIEEKARFIYEDYI 61 (68)
Q Consensus 47 ~~~~~~a~~Iy~~fi 61 (68)
..+.++|..||.+|-
T Consensus 66 q~Ir~kA~~iY~kFK 80 (127)
T 1z9e_A 66 QVIMEKSTMLYNKFK 80 (127)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999999984
No 31
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=38.22 E-value=27 Score=15.00 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q psy16714 49 IEEKARFIYEDYISILSPKE 68 (68)
Q Consensus 49 ~~~~a~~Iy~~fi~~~sp~E 68 (68)
..+.-++|.-+.+..+||.|
T Consensus 7 sL~EkHkILHrLLQ~~sP~d 26 (26)
T 3bej_E 7 SLTERHKILHRLLQEGSPSX 26 (26)
T ss_pred hHHHHHHHHHHHHHcCCCCC
Confidence 35667889999999999975
No 32
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=32.41 E-value=61 Score=18.42 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=23.4
Q ss_pred hChHHHHHHHHHHHhhcchhH-HHHHHHHHH
Q psy16714 10 TFKAGRKLFREFLRCEYSEEN-ILFWLACED 39 (68)
Q Consensus 10 ~dp~g~~~F~~FL~~e~s~En-l~Fw~ave~ 39 (68)
.+|.....|..=|++.....+ -.||..+-.
T Consensus 61 ~ep~~yN~Fl~~Lk~~~~~~~l~~FW~~iv~ 91 (120)
T 1q2z_A 61 SEEQRFNNFLKALQEKVEIKQLNHFWEIVVQ 91 (120)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSTTHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 678888888888887776665 599997765
No 33
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative involvement in human inherited and disorders of purkinje cell degeneration; HET: MSE; 1.50A {Homo sapiens}
Probab=28.63 E-value=24 Score=22.54 Aligned_cols=17 Identities=47% Similarity=0.968 Sum_probs=13.1
Q ss_pred hcchhHHHHHHHHHHHhcc
Q psy16714 25 EYSEENILFWLACEDLKKE 43 (68)
Q Consensus 25 e~s~Enl~Fw~ave~~k~~ 43 (68)
-+||||+ |.-|+.++..
T Consensus 26 cYCEENV--wkLce~~~~~ 42 (205)
T 3c9q_A 26 CYCEENV--WKLCEYIKNH 42 (205)
T ss_dssp TCHHHHH--HHHHHHHHHS
T ss_pred cccHHHH--HHHHHHHHhc
Confidence 4699998 7778877764
No 34
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=27.88 E-value=38 Score=19.58 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.9
Q ss_pred hChHHHHHHHHHHH-hhcchhHHHH
Q psy16714 10 TFKAGRKLFREFLR-CEYSEENILF 33 (68)
Q Consensus 10 ~dp~g~~~F~~FL~-~e~s~Enl~F 33 (68)
-+|...+.|.+|++ .-.+++||.|
T Consensus 124 ~s~e~~e~F~~~~~~~Gl~~enI~~ 148 (157)
T 3fiq_A 124 LNKAQKQELRKLAEEYNIPNENTQH 148 (157)
T ss_dssp CCHHHHHHHHHHHHHTTCCGGGCEE
T ss_pred CCHHHHHHHHHHHHHcCCCHHHEEe
Confidence 47888999999999 6678888854
No 35
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=27.26 E-value=36 Score=17.33 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=14.7
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHhhc
Q psy16714 1 MQCIKRTRNTFKAGRKLFREFLRCEY 26 (68)
Q Consensus 1 ~~~~~~~ll~dp~g~~~F~~FL~~e~ 26 (68)
||+++++=-.+| |+.||..+.
T Consensus 7 lqavqKt~~~hP-----Fk~yLd~di 27 (60)
T 2g31_A 7 IQAIQKSDEGHP-----FRAYLESEV 27 (60)
T ss_dssp TTHHHHHHHHCT-----THHHHHHHH
T ss_pred HHHHHhCCCCCC-----chhccccCc
Confidence 577777766666 888888543
No 36
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}
Probab=23.22 E-value=48 Score=21.11 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=12.5
Q ss_pred HHHHHHhhChHHHHHHH
Q psy16714 3 CIKRTRNTFKAGRKLFR 19 (68)
Q Consensus 3 ~~~~~ll~dp~g~~~F~ 19 (68)
.++..+++||.|+..++
T Consensus 46 ~~~~~m~~~P~Gr~iL~ 62 (225)
T 3kb4_A 46 KVVAVLSLTPQGKQAFE 62 (225)
T ss_dssp HHHHHHTTSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 45566778999887766
No 37
>4ato_A TOXN; HET: A23; 2.20A {Bacillus thuringiensis}
Probab=21.71 E-value=95 Score=19.44 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC
Q psy16714 46 PDVIEEKARFIYEDYISILSPK 67 (68)
Q Consensus 46 ~~~~~~~a~~Iy~~fi~~~sp~ 67 (68)
.+.+..+|..+|...+..+.|.
T Consensus 125 ~~~I~~kA~kLY~~~~~~~~~~ 146 (194)
T 4ato_A 125 MDRVTNKVEKVYKDVTVQGKPS 146 (194)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 4578899999999999877764
Done!