RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16714
(68 letters)
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 149
Score = 66.6 bits (162), Expect = 4e-16
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
G K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S + +
Sbjct: 26 PEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQ 82
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium, SGC,
signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B*
2bt2_A
Length = 155
Score = 66.2 bits (161), Expect = 5e-16
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
K G FR FL+ E+SEEN+ FWLACE+ KK + + KA I+E+++ + +P+
Sbjct: 46 KYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPR 101
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 65.8 bits (160), Expect = 8e-16
Identities = 48/56 (85%), Positives = 49/56 (87%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
AGR LFREFLR EYSEEN+LFWLACEDLKKE N VIEEKAR IYEDYISILSPK
Sbjct: 44 PAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPK 99
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 65.5 bits (159), Expect = 1e-15
Identities = 41/56 (73%), Positives = 48/56 (85%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
AGR +FR FLR EYSEEN+LFWLACE+LK E+N V++EKAR IYEDY+SILSPK
Sbjct: 31 PAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPK 86
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of
G-protein signalling domain, structural genomics,
structural genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 64.3 bits (156), Expect = 3e-15
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKK--ESNPDVIEEKARFIYEDYISILSPKE 68
G F EFL+ E+S EN+ FW ACE ++ S+ + ++AR IY++++S +
Sbjct: 22 PLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFLSSQALSP 80
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 64.3 bits (156), Expect = 3e-15
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
G K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S + +
Sbjct: 42 PEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQ 98
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 63.9 bits (155), Expect = 4e-15
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
G F+ FL+ E+SEEN+ FW+ACED KK +P + EKA+ IYE++I +PK
Sbjct: 36 NYGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIYEEFIQTEAPK 91
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 63.1 bits (153), Expect = 7e-15
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
K G F FL+ E+SEEN+ FWLACE+ KK + + +A I+++YI +PK
Sbjct: 29 KNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPK 84
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 155
Score = 63.6 bits (154), Expect = 7e-15
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLK--KESNPDVIEEKARFIYEDYISILSPKE 68
G + F +FLR E+SEENILFW ACE + + +AR I+ ++ +
Sbjct: 26 PVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLCSKATTP 84
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 140
Score = 62.3 bits (151), Expect = 1e-14
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
+ G + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKE
Sbjct: 26 RDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKE 82
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 64.4 bits (156), Expect = 2e-14
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
GR+ F+ FL+ E+S EN+ FW ACEDLK + ++EKA IY+ +++ + +
Sbjct: 309 PKGRQSFQYFLKKEFSGENLGFWEACEDLKY-GDQSKVKEKAEEIYKLFLAPGARRW 364
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 61.6 bits (149), Expect = 3e-14
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
+ G + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKE
Sbjct: 22 RDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKE 78
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 61.6 bits (149), Expect = 3e-14
Identities = 30/56 (53%), Positives = 36/56 (64%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
K G FR FL+ E+ EENI FWLACED KK +P + KAR IY D+I +PK
Sbjct: 34 KYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPK 89
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell
activation, phosphorylation; 2.0A {Homo sapiens} PDB:
2gtp_C*
Length = 145
Score = 61.5 bits (149), Expect = 4e-14
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
+ G+ +F FL+ E+SEENI FWLACED KK + D++ KA IY+ ++ + K
Sbjct: 33 QTGQNVFGSFLKSEFSEENIEFWLACEDYKK-TESDLLPCKAEEIYKAFVHSDAAK 87
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 61.2 bits (148), Expect = 4e-14
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
GR+ F +FL E+S EN+ FWLA EDLKK + + + I++++++ +P
Sbjct: 24 PVGREQFLKFLESEFSSENLRFWLAVEDLKKRPI-KEVPSRVQEIWQEFLAPGAPSA 79
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 61.7 bits (149), Expect = 7e-14
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
+ G F+ FL+ EYSEENI FW++CE+ KK +P + KA+ IY ++IS+ + K
Sbjct: 70 ECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATK 125
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 60.0 bits (145), Expect = 7e-14
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
K G +F+ FLR E+SEEN+ FWLACED KK + + KA+ I+ +YI+I + K
Sbjct: 18 KYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACK 73
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 60.1 bits (145), Expect = 1e-13
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
GR+ F+ FLR E+S EN+ FW ACEDLK + ++EKA IY+ +++ + +
Sbjct: 32 PKGRQSFQHFLRKEFSGENLGFWEACEDLKY-GDQSKVKEKAEEIYKLFLAPGARRW 87
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 57.4 bits (138), Expect = 1e-12
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEK----ARFIYEDYISILSPK 67
+ G LFR FL+ E + + FW AC +K D EEK AR IY YI +
Sbjct: 23 QDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGI 82
Query: 68 E 68
Sbjct: 83 V 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.004
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 8 RNTFKAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIE-----EKARFIYEDYIS 62
T KA + ++ + ++ F + D+ NP + EK + I E+Y +
Sbjct: 1636 YKTSKAAQDVWNR--ADNHFKDTYGFSIL--DIVIN-NPVNLTIHFGGEKGKRIRENYSA 1690
Query: 63 IL 64
++
Sbjct: 1691 MI 1692
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative
involvement in human inherited and disorders of
purkinje cell degeneration; HET: MSE; 1.50A {Homo
sapiens}
Length = 205
Score = 28.4 bits (63), Expect = 0.11
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 26 YSEENILFWLACEDLKKESNPDVIEEKARFI 56
Y EEN+ W CE +K + E A FI
Sbjct: 27 YCEENV--WKLCEYIKNHDQYPLEECYAVFI 55
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 27.5 bits (61), Expect = 0.25
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 14 GRKLFREFLRCEYSEEN--ILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
G LFR+F E + F+ + +K + +R I++ YI
Sbjct: 64 GYLLFRDFCLKHLEEAKPLVEFYEEIKKYEKLETEEERLVCSREIFDTYIMKELLA 119
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 26.7 bits (59), Expect = 0.50
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 34 WLACEDLKKESNPDVIEEKARFIYEDYISILSP 66
W+ + L D I R + + ++P
Sbjct: 204 WMVDKKLVTNGEWDEIARLTR----EIVEQVNP 232
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 25.9 bits (57), Expect = 1.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 14 GRKLFREFL--RCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
GR LFREF R E S + F + + + D + R + ++++S P
Sbjct: 63 GRLLFREFCATRPELSRC-VAFLDGVAEYEVTPD-DKRKACGRNLTQNFLSHTGPD 116
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 25.5 bits (56), Expect = 1.5
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 14 GRKLFREFLRCEYSEE---NILFWLACEDLKKESNPDVIEEKARFIYEDYISILSP 66
G++LF++F E+ + W ED + + +KA+ + Y+ +
Sbjct: 68 GKRLFQQF--LRTHEQHGPALQLWKDIEDYDTADD-ALRPQKAQALRAAYLEPQAQ 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 23.3 bits (49), Expect = 8.1
Identities = 6/61 (9%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 18 FREFLRCEYSEE---NILFWLACEDLKKESNP--------DVIEEKARFIYEDYI-SILS 65
F + C+ ++ +IL + + + + K + + ++ +L
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 66 P 66
Sbjct: 89 I 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.418
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,063,722
Number of extensions: 48669
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 28
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)