RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16714
         (68 letters)



>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
          RGS18 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 132

 Score = 60.4 bits (146), Expect = 3e-14
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
          + G + F  FL+ E+SEENI FW+ACED KK   P  I  KA+ IYE +I   +PKE
Sbjct: 20 RDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKE 76


>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 128

 Score = 60.0 bits (145), Expect = 3e-14
 Identities = 25/56 (44%), Positives = 38/56 (67%)

Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
          + G   F+ FL+ EYSEENI FW++CE+ KK  +P  +  KA+ IY ++IS+ + K
Sbjct: 20 ECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATK 75


>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 128

 Score = 60.0 bits (145), Expect = 3e-14
 Identities = 41/56 (73%), Positives = 48/56 (85%)

Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
           AGR +FR FLR EYSEEN+LFWLACE+LK E+N  V++EKAR IYEDY+SILSPK
Sbjct: 20 PAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPK 75


>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
          RGS16 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 58.5 bits (141), Expect = 9e-14
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
          K G   F  FL+ E+SEEN+ FWLACE+ KK  +   +  +A  I+E++I   +PKE
Sbjct: 9  KNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICSEAPKE 65


>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 147

 Score = 58.5 bits (141), Expect = 2e-13
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEK----ARFIYEDYISILSPK 67
          + G  LFR FL+ E   + + FW AC   +K    D  EEK    AR IY  YI   +  
Sbjct: 23 QDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGI 82

Query: 68 E 68
           
Sbjct: 83 V 83


>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
          N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 157

 Score = 56.9 bits (137), Expect = 7e-13
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 12 KAGRKLFREFLRCEYSEE--NILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 67
          K G  LFR+F      E    + F+   +  +K    +     +R I++ YI      
Sbjct: 34 KLGYLLFRDFCLKHLEEAKPLVEFYEEIKKYEKLETEEERLVCSREIFDTYIMKELLA 91


>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 138

 Score = 54.6 bits (131), Expect = 5e-12
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
            GR+ F+ FLR E+S EN+ FW ACEDLK   +   ++EKA  IY+ +++  + + 
Sbjct: 25 PKGRQSFQHFLRKEFSGENLGFWEACEDLKY-GDQSKVKEKAEEIYKLFLAPGARRW 80


>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 182

 Score = 52.5 bits (126), Expect = 6e-11
 Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 12 KAGRKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 68
           A   +F  ++  +     +LF+L  E  ++ ++P       + I+  ++   +P  
Sbjct: 16 PAHLGVFLRYIFSQADPSPLLFYLCAEVYQQ-ASPKDSRSLGKDIWNIFLEKNAPLR 71


>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
           [TaxId: 562]}
          Length = 213

 Score = 24.7 bits (54), Expect = 0.96
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 44  SNPDVIEEKARFIYEDYISILSPK 67
            +  ++   A  IY D IS L P+
Sbjct: 126 QSETLMSAMAA-IYVDVISPLGPR 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 274,858
Number of extensions: 10605
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 12
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)