RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16716
(141 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 106 bits (267), Expect = 5e-28
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGDYT 59
+ E+ +V+GD +PTYD LQ + L VIKET+RL P P+ + R + Y
Sbjct: 298 LREEIDEVIGD--KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYL 355
Query: 60 IPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSAM 104
IP G + + +Y LHR P+++ NP +FDP+RFL R A
Sbjct: 356 IPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAF 400
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 86.0 bits (213), Expect = 1e-20
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 4 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYE-VQCGDYTIPA 62
EL VL P PTY+ ++ L LTR I E+MRL+P PV+ R A E V G Y + A
Sbjct: 318 ELDRVLQGRP---PTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNA 374
Query: 63 GASIAIFIYGLHRHPQLWNNPNQFDPDRF 91
G I I +Y +HR P++W +F P+RF
Sbjct: 375 GQDIMISVYNIHRSPEVWERAEEFVPERF 403
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 80.6 bits (199), Expect = 1e-18
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 2 YHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVI-ARSAPYEVQCGDYTI 60
Y E+++V GD T + L L L V ET+R + P++ R + G Y I
Sbjct: 300 YREIREVCGDE---RVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDI 356
Query: 61 PAGASIAIFIYGLHRHPQLWNNPNQFDPDRFL 92
PAG IAI IYG + + W NP ++DP+RFL
Sbjct: 357 PAGTQIAINIYGCNMDKKRWENPEEWDPERFL 388
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 78.6 bits (194), Expect = 5e-18
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 20 DQLQRL------DLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGL 73
DQL +L LL V++ET+RL+P P+ R A +V+ G Y IPAG + + I
Sbjct: 268 DQLAKLRAEPDRPLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAA 327
Query: 74 HRHPQLWNNPNQFDPDRFL 92
+R P+++ +P++FDP+RF
Sbjct: 328 NRDPEVFPDPDEFDPERFN 346
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 76.8 bits (189), Expect = 3e-17
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 1 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTI 60
V E+ +V G P+ D L +L LL VI E++RL+P A ++ R A +++ GD I
Sbjct: 353 VRAEVAEVCGGET---PSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHI 409
Query: 61 PAGASIAIFIYGLHRHPQLWN-NPNQFDPDRF 91
P G SI I + +H +LW + N+F+PDRF
Sbjct: 410 PKGLSIWIPVLAIHHSEELWGKDANEFNPDRF 441
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 71.8 bits (176), Expect = 1e-15
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 3 HELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGDYTIP 61
EL V+G D + L +L L VIKET RL P+ P+ + R A E + Y IP
Sbjct: 336 EELDAVVGR--DRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIP 393
Query: 62 AGASIAIFIYGLHRHPQLWNNPNQFDPDRFLP 93
GA++ + ++ + R P+ W +P +F PDRFLP
Sbjct: 394 KGATLLVNVWAIARDPEQWPDPLEFRPDRFLP 425
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 71.1 bits (174), Expect = 3e-15
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 4 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAG 63
E+ VLGD PT + +++L TRVI E++RL+P PV+ R + G Y I G
Sbjct: 431 EVDSVLGDR---FPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRG 487
Query: 64 ASIAIFIYGLHRHPQLWNNPNQFDPDRF 91
I I ++ LHR P+ W++ +F+P+R+
Sbjct: 488 EDIFISVWNLHRSPKHWDDAEKFNPERW 515
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 65.9 bits (161), Expect = 1e-13
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 4 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPY----EVQCGDYT 59
EL VLG P + T +L L V+KET+RL A P++ P+ + + G Y
Sbjct: 333 ELDTVLG--PGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLV---PHMNLEDAKLGGYD 387
Query: 60 IPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSS 97
IPA + I + + L +P+LW NP +F P+RFL ++
Sbjct: 388 IPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAK 425
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 64.4 bits (157), Expect = 5e-13
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 1 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGD-Y 58
Y+E++ + Q +IKET+R P +P + RS ++ G +
Sbjct: 320 AYNEIKSTVNGRNKV--LLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGH 377
Query: 59 TIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSAM 104
IP A I I Y L R+ + + NP QFDP RFL S N + M
Sbjct: 378 FIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPDS---NDAFM 420
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 59.1 bits (143), Expect = 4e-11
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 4 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAP-VIARSAPYEVQCGDYTIPA 62
EL V+G + L L+ L V++ET R+ PA P +I + Y IPA
Sbjct: 336 ELDSVVG--RNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPA 393
Query: 63 GASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSS 97
+ I +GL R+ ++W++ +F P+R P++ S
Sbjct: 394 KTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGS 428
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 57.0 bits (138), Expect = 2e-10
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 18 TYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHP 77
T +++++ L++VI ET+RL + + R A +V+ YTIP G + + +H P
Sbjct: 343 TLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDP 402
Query: 78 QLWNNPNQFDPDR 90
+++ NP +FDP R
Sbjct: 403 EVYPNPKEFDPSR 415
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 56.4 bits (136), Expect = 3e-10
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 22 LQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLW 80
L +L L + KE+ R P+ P+ + R + + Y IP +++ I+ + R P +W
Sbjct: 345 LPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVW 404
Query: 81 NNPNQFDPDRFLPSQSSHRNP 101
NP +F P+RFL +++ +P
Sbjct: 405 ENPEEFRPERFLSEKNAKIDP 425
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 55.6 bits (134), Expect = 6e-10
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 1 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTI 60
V EL DV+G + L++L L +KET+RL P P++ + + Y I
Sbjct: 341 VQQELADVVG--LNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFI 398
Query: 61 PAGASIAIFIYGLHRHPQLWNNPNQFDPDRFL 92
P + + I + + R W +P+ F P RFL
Sbjct: 399 PKRSRVMINAWAIGRDKNSWEDPDTFKPSRFL 430
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 52.4 bits (125), Expect = 7e-09
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 4 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAP-VIARSAPYEVQCGDYTIPA 62
E+++ + + + T D ++ L ++KET+R+ P P +I R+ + + Y IPA
Sbjct: 329 EVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPA 388
Query: 63 GASIAIFIYGLHRHPQLWN-NPNQFDPDRFLPSQ 95
G ++ + + + R + W NP++F P+RFL +
Sbjct: 389 GTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKE 422
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 51.6 bits (123), Expect = 1e-08
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 4 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIA-RSAPYEVQCGDYTIPA 62
E+++V+GD + + + L L VIKE++RL P P++ R + + G Y IPA
Sbjct: 328 EVRNVIGDK--GYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPA 385
Query: 63 GASIAIFIYGLHRHPQLW-NNPNQFDPDRFL 92
I + + + R W +NPN+F P+RF+
Sbjct: 386 KTIIQVNAWAVSRDTAAWGDNPNEFIPERFM 416
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 50.3 bits (120), Expect = 4e-08
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 1 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAP-VIARSAPYEVQCGDYT 59
++ E++ GD + D + ++ L V+ E +R P A V+ A +++ G Y
Sbjct: 343 LHDEIKAKTGDDQEEVSEED-VHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYL 401
Query: 60 IPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLP 93
IP GA++ + + R + W P +F P+RFL
Sbjct: 402 IPKGATVNFMVAEMGRDEREWERPMEFVPERFLA 435
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 49.2 bits (117), Expect = 1e-07
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 18 TYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHP 77
T++ +++ L +RVI+ET+R+ R A +V+ Y IP G + +H
Sbjct: 319 TWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSA 378
Query: 78 QLWNNPNQFDPDRF 91
++++P +FDP RF
Sbjct: 379 DIFSDPGKFDPSRF 392
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 48.1 bits (114), Expect = 2e-07
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 4 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAA----PVIARSAPYEVQCGDYT 59
EL +V+G D + L+ L +ET R+ P+A P +AR + G Y
Sbjct: 354 ELDEVVGK--DRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQ---DTTLGGYF 408
Query: 60 IPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFL 92
IP G+ I + GL R+P++W +P ++P+R L
Sbjct: 409 IPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHL 441
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 47.7 bits (113), Expect = 4e-07
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 22 LQRLDLLTRVIKETMRLFPAA----PVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHP 77
+ +L+ + +I+E RL P A P +A S + Y IP G+ + + YGL R+P
Sbjct: 383 IPKLNYVKAIIREAFRLHPVAAFNLPHVALS---DTTVAGYHIPKGSQVLLSRYGLGRNP 439
Query: 78 QLWNNPNQFDPDRFL 92
++W++P F P+R L
Sbjct: 440 KVWSDPLSFKPERHL 454
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 42.5 bits (100), Expect = 2e-05
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 18 TYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHP 77
++ ++++ VI ET+RL + R A +V+ Y IP+G + I +H
Sbjct: 336 NWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDS 395
Query: 78 QLWNNPNQFDPDRFLPSQSSHRNPSAMSVIVT 109
L++ P F+P R+ ++ S S T
Sbjct: 396 SLYDQPQLFNPWRWQ-QNNNRGGSSGSSSATT 426
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 41.2 bits (97), Expect = 6e-05
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 4 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIP-- 61
E V+G + A ++++++ + L + E+MRLFP PV S + D +P
Sbjct: 333 EADRVMGPN-QEAASFEEMKEMHYLHAALYESMRLFP--PVQFDS---KFAAEDDVLPDG 386
Query: 62 ----AGASIAIFIYGLHRHPQLWNNPN--QFDPDRFL 92
G + Y + R ++W P+ +F P+R+L
Sbjct: 387 TFVAKGTRVTYHPYAMGRMERIW-GPDCLEFKPERWL 422
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 39.0 bits (91), Expect = 3e-04
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 18 TYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYT-IPAGASIAIFIYGLHRH 76
TYD L +L L VI ET+RL+PA P + + D T + AG + Y + R
Sbjct: 364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRM 423
Query: 77 PQLWN-NPNQFDPDRFL 92
W + F P+R++
Sbjct: 424 EYNWGPDAASFKPERWI 440
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 37.7 bits (87), Expect = 9e-04
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 20 DQLQRLDLLTRVIKETMRLFPAAPVIARS-APYEVQCGDYTIPAGASIAIFIYGLHRHPQ 78
+ L++L L + E+MRL+P P ++ A +V + + A + I I IY L R
Sbjct: 349 EDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRS 408
Query: 79 LW-NNPNQFDPDRFLPSQSSHRN-PS 102
+W + F P+R++ R+ PS
Sbjct: 409 VWGEDALDFKPERWISDNGGLRHEPS 434
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 35.1 bits (81), Expect = 0.006
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 12 SPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIY 71
P+ ++ + + VI ET RL + R +++ Y IP G I ++
Sbjct: 313 RPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTR 372
Query: 72 GLHRHPQLWNNPNQFDPDRFL 92
++ P L+ +P F+P R+L
Sbjct: 373 EINYDPFLYPDPMTFNPWRWL 393
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 35.1 bits (81), Expect = 0.007
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 30 RVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPD 89
VI ET+R+ + R A +V+ Y IP G + + +H + ++NP QF+P
Sbjct: 319 NVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPW 378
Query: 90 RF 91
R+
Sbjct: 379 RW 380
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 29.9 bits (67), Expect = 0.36
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 31 VIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDR 90
V+ ET+R+ I R A +++ YTIP G + +H + + + F+P R
Sbjct: 335 VVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWR 394
Query: 91 F 91
+
Sbjct: 395 W 395
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 29.5 bits (67), Expect = 0.52
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 26/97 (26%)
Query: 11 DSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVI---AR--------SAPYEVQCGDYT 59
+ T+ L+++ L+ V+ E +R+ P P AR A +E++ G+
Sbjct: 319 KAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGE-- 376
Query: 60 IPAGASIAIFIYGLH----RHPQLWNNPNQFDPDRFL 92
++G R P++++ P +F PDRF+
Sbjct: 377 ---------MLFGYQPLVTRDPKVFDRPEEFVPDRFM 404
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 27.7 bits (62), Expect = 2.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 2 YHELQDVLGDSPDSAPTYDQLQRLDL 27
Y + Q + D D YD++ LDL
Sbjct: 331 YAKAQGLWYDPADKDAEYDKVLELDL 356
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains
RING Zn-finger [General function prediction only].
Length = 1525
Score = 26.6 bits (58), Expect = 6.5
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 80 WNNPNQFDPDRFL 92
WN+P+QFD ++FL
Sbjct: 71 WNDPSQFDNEQFL 83
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 26.1 bits (58), Expect = 8.4
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 17/80 (21%)
Query: 1 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMR-----------LFPAAPVIARSA 49
V +D+L S Y LD+ ++ R LFP P+ A
Sbjct: 336 VRAIFRDLLDPPQISEDAYR--AALDVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPI 393
Query: 50 PYEVQCGDYTIPAGASIAIF 69
+ D I GA++ F
Sbjct: 394 GDD----DTVILNGAAVPTF 409
>gnl|CDD|225685 COG3143, CheZ, Chemotaxis protein [Cell motility and secretion /
Signal transduction mechanisms].
Length = 217
Score = 25.5 bits (56), Expect = 9.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 8 VLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSA 49
L D +A D +QR+ LTR+++E++R IA +A
Sbjct: 7 KLADEASAAAEPDMIQRIGSLTRMLRESLRELGLDQAIAEAA 48
>gnl|CDD|225231 COG2356, EndA, Endonuclease I [DNA replication, recombination,
and repair].
Length = 237
Score = 25.6 bits (56), Expect = 9.6
Identities = 9/41 (21%), Positives = 9/41 (21%), Gaps = 4/41 (9%)
Query: 27 LLTRVIKETMRLFPAAPVIA----RSAPYEVQCGDYTIPAG 63
L R F A AP CG G
Sbjct: 16 LSGSAHAAGPRSFSQAKAAPVKVHADAPGSFYCGCEIDWQG 56
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism].
Length = 311
Score = 25.9 bits (57), Expect = 9.8
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 3 HELQDVLGDSPDSAPTYDQLQRLDLLTRVIK---ETMRLFPAA--PVIARSAPYEVQCGD 57
E + + G D+ L + T V+ E +F + A ++V+ D
Sbjct: 192 EEAELLTGLEEDAEAAAALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVD 251
Query: 58 YTIPAG-ASIAIFIYGLHRHPQL 79
T AG A A F+ GL L
Sbjct: 252 -TTGAGDAFAAGFLAGLLEGKSL 273
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,324,449
Number of extensions: 642112
Number of successful extensions: 586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 36
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)