RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16716
(141 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 77.0 bits (188), Expect = 4e-18
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 2 YHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIP 61
E+ VL + PTYD + +++ L V+ ET+RLFP A + R +V+ IP
Sbjct: 305 QEEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIP 362
Query: 62 AGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSAM 104
G + I Y LHR P+ W P +F P+RF + +P
Sbjct: 363 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIY 405
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 69.8 bits (169), Expect = 1e-15
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 1 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGDYT 59
V E+ ++G P+ P++D ++ V+ E +R P+ I + + Y+
Sbjct: 297 VQKEIDLIMG--PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYS 354
Query: 60 IPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSAM 104
IP G ++ +Y +H + W +P F P+RFL S A+
Sbjct: 355 IPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEAL 399
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 65.8 bits (159), Expect = 4e-14
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 1 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSA-PYEVQCGDYT 59
V E++ V+G P D ++ VI E RL P + Q Y
Sbjct: 297 VQKEIEQVIG--SHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYV 354
Query: 60 IPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSAM 104
IP + + P+ + PN F+P FL + + +
Sbjct: 355 IPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGF 399
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 50.5 bits (119), Expect = 8e-09
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Query: 2 YHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAP-YEVQCGDYTI 60
E++ V+G + +P + V+ E R P A +++ +Y I
Sbjct: 299 QEEIERVIGR--NRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLI 356
Query: 61 PAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSAM 104
P G +I I + + + + NP FDP FL + +
Sbjct: 357 PKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYF 400
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 48.6 bits (114), Expect = 4e-08
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 14 DSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSA-PYEVQCGDYTIPAGASIAIFIYG 72
D P+Y Q+++L + V+ E +RL+P AP + A V G+Y + G + + I
Sbjct: 298 DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQ 357
Query: 73 LHRHPQLW-NNPNQFDPDRFLPSQSSHRN 100
LHR +W ++ +F P+RF + ++
Sbjct: 358 LHRDKTIWGDDVEEFRPERFENPSAIPQH 386
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 48.3 bits (113), Expect = 5e-08
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 49 APYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPS 94
A + + I G I + +R ++++NP++FD RF
Sbjct: 321 ALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDITRFPNR 366
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 43.5 bits (101), Expect = 2e-06
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 28 LTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFD 87
++E R +P P + + + G S+ + +YG + P+LW++P++F
Sbjct: 271 REMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFR 330
Query: 88 PDRFLPSQSSHRNPSAM 104
P+RF N M
Sbjct: 331 PERFAE---REENLFDM 344
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 42.5 bits (98), Expect = 4e-06
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 56 GDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPS 94
TI G I +RHP + + FD R +
Sbjct: 299 DGRTIARGEPILASYAAANRHPDWHEDADTFDATRTVKE 337
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 38.6 bits (88), Expect = 9e-05
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 47 RSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQS 96
R+A +V GD + A I +R +++ NP++F+ +R P Q
Sbjct: 288 RTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQD 337
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 37.9 bits (86), Expect = 2e-04
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 36 MRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRF 91
+R R A EV+ G IP +++ + +R P+ + +P++FD R
Sbjct: 280 LRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVTRD 335
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 37.5 bits (85), Expect = 2e-04
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 50 PYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRF 91
+V+ I AG ++ + +R P+++ +P++ D +R
Sbjct: 291 LEDVEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFERS 332
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 37.2 bits (84), Expect = 3e-04
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 52 EVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFL-PSQSSHRNPSAM 104
E + + I G +A +R P+ + +P+ F P R+ P Q N
Sbjct: 327 EFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTW 380
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 35.5 bits (80), Expect = 0.001
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 36 MRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRF 91
L R A ++ I G S+ + +R P L + ++ D R
Sbjct: 274 RYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTRE 329
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 35.5 bits (80), Expect = 0.001
Identities = 16/64 (25%), Positives = 23/64 (35%)
Query: 31 VIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDR 90
V + L P R A +V I AG + I +R L +P+ D +R
Sbjct: 279 VNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDANR 338
Query: 91 FLPS 94
S
Sbjct: 339 AAVS 342
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 34.8 bits (78), Expect = 0.002
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 49 APYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPS 94
A +++ +I G + + I R +++ P+ FD R +
Sbjct: 294 ARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRDTSA 339
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 34.0 bits (76), Expect = 0.004
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 36 MRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWN-NPNQFDPDRFLPS 94
P + V+ R A +V GD IPAG ++ + L R + ++FD R +
Sbjct: 277 RFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSGN 336
Query: 95 Q 95
+
Sbjct: 337 R 337
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 33.9 bits (76), Expect = 0.005
Identities = 5/41 (12%), Positives = 10/41 (24%)
Query: 51 YEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRF 91
+ + + G I + + P D R
Sbjct: 293 SDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQ 333
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 32.1 bits (71), Expect = 0.016
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 50 PYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQ 95
++Q GD + G + + + G + P+ + NP + DR P+
Sbjct: 288 TADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDRPNPTS 333
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 31.0 bits (68), Expect = 0.042
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 42 APVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRF 91
R V+ GD TI G + ++I +R +++++ +F PDR
Sbjct: 254 VMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRN 303
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 28.6 bits (62), Expect = 0.23
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 26 DLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQ 85
+ ++E +R P R +V+ D I G + ++I +R +++ +P+
Sbjct: 238 KGALKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDS 297
Query: 86 FDPDRF 91
F PDR
Sbjct: 298 FIPDRT 303
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 28.2 bits (61), Expect = 0.34
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 74 HRHPQLWNNPNQFDPDRFLPSQSSHRNP 101
+ + F P+RFL + +
Sbjct: 298 VTQRLHFPDGEAFRPERFLEERGTPSGR 325
>d1vq0a1 d.193.1.1 (A:1-230) Heat shock protein 33, Hsp33
{Thermotoga maritima [TaxId: 2336]}
Length = 230
Score = 24.9 bits (54), Expect = 3.6
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 3 HELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV 44
++ + + P + + + + LD+L R+ E + A +
Sbjct: 186 EMIEKNIKNLPSISKLFQEAEPLDVLERIFGEKVGFVETAEI 227
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 24.4 bits (52), Expect = 5.4
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 26 DLLTRVIKETMRLFPAAPVIARSAPYEVQ--------CGDYTIPAGASIAIFIYGLHRHP 77
+LL + F A P +A SAP V +P + + G R
Sbjct: 10 ELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKD 69
Query: 78 QLWN 81
L +
Sbjct: 70 GLVS 73
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 335
Score = 24.3 bits (52), Expect = 7.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 64 ASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQ 95
A A ++ R NP+ + DRF+ S
Sbjct: 36 APAAHVLWSQMRM--NPTNPDWINRDRFVLSN 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,617
Number of extensions: 22422
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 25
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.2 bits)