RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16719
(197 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 148 bits (377), Expect = 7e-43
Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGDY 85
++ E+ +V+GD +PTYD LQ + L VIKET+RL P P+ + R + Y
Sbjct: 297 KLREEIDEVIGD--KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGY 354
Query: 86 TIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 145
IP G + + +Y LHR P+++ NP +FDP+RFL R ++PF GPR C+G +
Sbjct: 355 LIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGER 414
Query: 146 YAMLQMKTTISTILRRYKILP 166
A ++MK ++T+L+ +++
Sbjct: 415 LARMEMKLFLATLLQNFEVEL 435
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 117 bits (294), Expect = 5e-31
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 15/169 (8%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYE-VQCGDY 85
+ EL VL P PTY+ ++ L LTR I E+MRL+P PV+ R A E V G Y
Sbjct: 314 KAQEELDRVLQGRP---PTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGY 370
Query: 86 TIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRF---LPSQSSHRNPSGYVPFSLGPRGCI 142
+ AG I I +Y +HR P++W +F P+RF P + Y+PFS GPR C+
Sbjct: 371 KVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCV 430
Query: 143 GSKYAMLQMKTTISTILRRYKI--LPGDKCKSLQDIRFEFGMTMRSLPG 189
G ++A+L+ ++ +L+R + +P QDI G T+ + G
Sbjct: 431 GDQFALLEAIVALAVLLQRLDLELVPD------QDIVMTTGATIHTTNG 473
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 111 bits (280), Expect = 3e-29
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 15/125 (12%)
Query: 47 DQLQRL------DLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGL 100
DQL +L LL V++ET+RL+P P+ R A +V+ G Y IPAG + + I
Sbjct: 268 DQLAKLRAEPDRPLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAA 327
Query: 101 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 160
+R P+++ +P++FDP+RF + ++PF GP C+G+ A L++K ++ +LR
Sbjct: 328 NRDPEVFPDPDEFDPERF---------NNAHLPFGGGPHRCLGAALARLELKVALAELLR 378
Query: 161 RYKIL 165
R+ +L
Sbjct: 379 RFPLL 383
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 106 bits (266), Expect = 6e-27
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYT 86
+V E+ +V G P+ D L +L LL VI E++RL+P A ++ R A +++ GD
Sbjct: 352 KVRAEVAEVCGGET---PSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLH 408
Query: 87 IPAGASIAIFIYGLHRHPQLWN-NPNQFDPDRFLPSQSSHRNPSG--YVPFSLGPRGCIG 143
IP G SI I + +H +LW + N+F+PDRF + G ++PF+ GPR CIG
Sbjct: 409 IPKGLSIWIPVLAIHHSEELWGKDANEFNPDRF----AGRPFAPGRHFIPFAAGPRNCIG 464
Query: 144 SKYAMLQMKTTISTILRRYKI 164
+AM++ K ++ ++ ++
Sbjct: 465 QAFAMMEAKIILAMLISKFSF 485
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 95.2 bits (237), Expect = 5e-23
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGD- 84
+ Y+E++ + Q +IKET+R P +P + RS ++ G
Sbjct: 319 KAYNEIKSTVNGRNKV--LLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGG 376
Query: 85 YTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGS 144
+ IP A I I Y L R+ + + NP QFDP RFL S N + ++PFS+GPR C+G
Sbjct: 377 HFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPDS---NDA-FMPFSIGPRNCVGQ 432
Query: 145 KYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMR 185
++A ++ S I+ +K+ D K + E+G+T++
Sbjct: 433 QFAQDELYLAFSNIILNFKLKSIDGKKIDETE--EYGLTLK 471
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 91.7 bits (228), Expect = 6e-22
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVI-ARSAPYEVQCGDY 85
R+Y E+++V GD T + L L L V ET+R + P++ R + G Y
Sbjct: 298 RLYREIREVCGDE---RVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGY 354
Query: 86 TIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 145
IPAG IAI IYG + + W NP ++DP+RFL + + + F G R C GS
Sbjct: 355 DIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSL 414
Query: 146 YAMLQMKTTISTILRR--YKILPGD 168
AML I+ +++ +++ GD
Sbjct: 415 QAMLIACMAIARLVQEFEWRLREGD 439
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 92.3 bits (229), Expect = 7e-22
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 12/158 (7%)
Query: 18 YLEAVESSF--RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARS 75
YL + E S ++ E+ VLGD PT + +++L TRVI E++RL+P PV+ R
Sbjct: 416 YLLSKEPSVVAKLQEEVDSVLGDR---FPTIEDMKKLKYTTRVINESLRLYPQPPVLIRR 472
Query: 76 APYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG----Y 131
+ G Y I G I I ++ LHR P+ W++ +F+P+R+ P + N + Y
Sbjct: 473 SLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERW-PLDGPNPNETNQNFSY 531
Query: 132 VPFSLGPRGCIGSKYAMLQMKTTISTILRR--YKILPG 167
+PF GPR C+G +A + + ++RR +++ PG
Sbjct: 532 LPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPG 569
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 84.4 bits (209), Expect = 3e-19
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPY----EVQC 82
++ EL VLG P + T +L L V+KET+RL A P++ P+ + +
Sbjct: 329 KLRDELDTVLG--PGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLV---PHMNLEDAKL 383
Query: 83 GDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG---YVPFSLGPR 139
G Y IPA + I + + L +P+LW NP +F P+RFL ++ ++PF +G R
Sbjct: 384 GGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRR 443
Query: 140 GCIGSKYAMLQMKTTISTILRRYKILP 166
C G A+ + + +++ +++LP
Sbjct: 444 SCPGIILALPILGIVLGRLVQNFELLP 470
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 79.1 bits (195), Expect = 2e-17
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 30 HELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGDYTIP 88
EL V+G D + L +L L VIKET RL P+ P+ + R A E + Y IP
Sbjct: 336 EELDAVVGR--DRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIP 393
Query: 89 AGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSS-----HRNPSGYVPFSLGPRGCIG 143
GA++ + ++ + R P+ W +P +F PDRFLP + +PF G R C G
Sbjct: 394 KGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAG 453
Query: 144 SKYAMLQMKTTISTILRRYKI-LPGDKCKSLQDIRFEFGMTM-RSLP 188
+ + + +T++ + L + ++ +G+T+ R++P
Sbjct: 454 LSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVP 500
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 72.8 bits (179), Expect = 3e-15
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 33/184 (17%)
Query: 14 SQHPYLEAVESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIA 73
S+HP V S+ R E V+G + A ++++++ + L + E+MRLFP PV
Sbjct: 321 SKHP---EVASAIRE--EADRVMGPN-QEAASFEEMKEMHYLHAALYESMRLFP--PVQF 372
Query: 74 RSAPYEVQCGDYTIP------AGASIAIFIYGLHRHPQLWNNPN--QFDPDR------FL 119
S + D +P G + Y + R ++W P+ +F P+R F+
Sbjct: 373 DS---KFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWG-PDCLEFKPERWLKNGVFV 428
Query: 120 PSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFE 179
P NP Y F G R C+G + A+++MK+ ++RR+ I + RF
Sbjct: 429 PE-----NPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAP--RFA 481
Query: 180 FGMT 183
G+T
Sbjct: 482 PGLT 485
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 70.1 bits (172), Expect = 3e-14
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 45 TYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHP 104
T +++++ L++VI ET+RL + + R A +V+ YTIP G + + +H P
Sbjct: 343 TLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDP 402
Query: 105 QLWNNPNQFDPDR---FLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 161
+++ NP +FDP R + P ++PF LG R C G+ A L++ + L
Sbjct: 403 EVYPNPKEFDPSRWDNYTPK------AGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLG 456
Query: 162 YKILP 166
Y++
Sbjct: 457 YRLER 461
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 69.9 bits (171), Expect = 3e-14
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAP-VIARSAPYEVQCGDY 85
++ EL V+G + L L+ L V++ET R+ PA P +I + Y
Sbjct: 332 KIQEELDSVVG--RNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGY 389
Query: 86 TIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQS-----SHRNPSGYVPFSLGPRG 140
IPA + I +GL R+ ++W++ +F P+R P++ SH +PFS G R
Sbjct: 390 YIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRK 449
Query: 141 CIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQ-DIRFEFGMTM 184
C G+ + + ++ + + P D + D + +GMTM
Sbjct: 450 CPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTM 494
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 68.3 bits (167), Expect = 1e-13
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 49 LQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLW 107
L +L L + KE+ R P+ P+ + R + + Y IP +++ I+ + R P +W
Sbjct: 345 LPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVW 404
Query: 108 NNPNQFDPDRFLPSQSSHRNPSG----YVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 162
NP +F P+RFL +++ +P G +PF G R C G++ ++ ++ + T++ +
Sbjct: 405 ENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSF 463
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 67.7 bits (165), Expect = 2e-13
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 47 DQLQRLDLLTRVIKETMRLFPAAPVIARS-APYEVQCGDYTIPAGASIAIFIYGLHRHPQ 105
+ L++L L + E+MRL+P P ++ A +V + + A + I I IY L R
Sbjct: 349 EDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRS 408
Query: 106 LW-NNPNQFDPDRFLPSQSSHRN-PS-GYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 162
+W + F P+R++ R+ PS ++ F+ GPR C+G A+LQMK I++ Y
Sbjct: 409 VWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNY 468
Query: 163 --KILPGDKCKSLQDI--RFEFGM 182
K++ G K +++ I R + G+
Sbjct: 469 DFKVIEGHKIEAIPSILLRMKHGL 492
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 63.3 bits (154), Expect = 6e-12
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 45 TYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYT-IPAGASIAIFIYGLHRH 103
TYD L +L L VI ET+RL+PA P + + D T + AG + Y + R
Sbjct: 364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRM 423
Query: 104 PQLWN-NPNQFDPDRFLPSQS-SHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 161
W + F P+R++ + +P + F GPR C+G A LQMK ++ + R
Sbjct: 424 EYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRF 483
Query: 162 YK--ILPG 167
+K ++PG
Sbjct: 484 FKFQLVPG 491
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 62.9 bits (153), Expect = 7e-12
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYT 86
RV EL DV+G + L++L L +KET+RL P P++ + + Y
Sbjct: 340 RVQQELADVVG--LNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYF 397
Query: 87 IPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG--YVPFSLGPRGCIGS 144
IP + + I + + R W +P+ F P RFL S ++PF G R C G
Sbjct: 398 IPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGM 457
Query: 145 KYAMLQMKTTISTILRRYKI-LPGDKCKSLQDIRFEFGMT 183
+ + + ++ +L + LP S D+ FG+T
Sbjct: 458 QLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLT 497
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 62.2 bits (151), Expect = 1e-11
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 45 TYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHP 104
++ ++++ VI ET+RL + R A +V+ Y IP+G + I +H
Sbjct: 336 NWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDS 395
Query: 105 QLWNNPNQFDPDRFL-------PSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTI 155
L++ P F+P R+ S SS + ++PF GPR C GS+ A L+M I
Sbjct: 396 SLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFI 453
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 61.6 bits (149), Expect = 2e-11
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 31 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAA----PVIARSAPYEVQCGDYT 86
EL +V+G D + L+ L +ET R+ P+A P +AR + G Y
Sbjct: 354 ELDEVVGK--DRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQ---DTTLGGYF 408
Query: 87 IPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPS------GYVPFSLGPRG 140
IP G+ I + GL R+P++W +P ++P+R L + + +V FS G RG
Sbjct: 409 IPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRG 468
Query: 141 CIGSKYAMLQMKTTISTILRRY 162
C+G K + M ++ L+ +
Sbjct: 469 CVGVKVGTIMMVMMLARFLQGF 490
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 61.1 bits (148), Expect = 3e-11
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 45 TYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHP 104
T++ +++ L +RVI+ET+R+ R A +V+ Y IP G + +H
Sbjct: 319 TWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSA 378
Query: 105 QLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKI 164
++++P +FDP RF + P+ ++PF G C G++ A L++ I + +Y+
Sbjct: 379 DIFSDPGKFDPSRFEVAP----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRW 434
Query: 165 LPGDKCKSLQDIRFEFGMTMRSLPGNDIRI 194
S+ +LP N + I
Sbjct: 435 -------SIVGTSNGIQYGPFALPQNGLPI 457
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 60.1 bits (145), Expect = 7e-11
Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 31 ELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAP-VIARSAPYEVQCGDYTIPA 89
E+++ + + + T D ++ L ++KET+R+ P P +I R+ + + Y IPA
Sbjct: 329 EVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPA 388
Query: 90 GASIAIFIYGLHRHPQLWN-NPNQFDPDRFLPSQSSHRNPS-GYVPFSLGPRGCIGSKYA 147
G ++ + + + R + W NP++F P+RFL + + ++PF G R C G +
Sbjct: 389 GTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLG 448
Query: 148 MLQMKTTISTILRRY 162
++ + +L +
Sbjct: 449 AAMLEVPYANLLLNF 463
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 59.2 bits (143), Expect = 2e-10
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAP-VIARSAPYEVQCGDY 85
+++ E++ GD + D + ++ L V+ E +R P A V+ A +++ G Y
Sbjct: 342 KLHDEIKAKTGDDQEEVSEED-VHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGY 400
Query: 86 TIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHR-NPSG-----YVPFSLGPR 139
IP GA++ + + R + W P +F P+RFL + +G +PF +G R
Sbjct: 401 LIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRR 460
Query: 140 GCIGSKYAMLQMKTTISTILRRY--KILPGD 168
C G AML ++ ++ ++R + K +PGD
Sbjct: 461 ICAGLGIAMLHLEYFVANMVREFEWKEVPGD 491
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 58.9 bits (142), Expect = 2e-10
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 31/154 (20%)
Query: 49 LQRLDLLTRVIKETMRLFPAA----PVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHP 104
+ +L+ + +I+E RL P A P +A S + Y IP G+ + + YGL R+P
Sbjct: 383 IPKLNYVKAIIREAFRLHPVAAFNLPHVALS---DTTVAGYHIPKGSQVLLSRYGLGRNP 439
Query: 105 QLWNNPNQFDPDRFLPSQSS---HRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 161
++W++P F P+R L S N ++ FS G RGC A + T I+T++
Sbjct: 440 KVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGC-----AAPALGTAITTMMLA 494
Query: 162 YKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIE 195
++L G K K L G++ R+E
Sbjct: 495 -RLLQGFKWK---------------LAGSETRVE 512
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 52.8 bits (126), Expect = 2e-08
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 23 ESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIA-RSAPYEVQ 81
E+ + E+++V+GD + + + L L VIKE++RL P P++ R + +
Sbjct: 320 EAMKKAQDEVRNVIGDK--GYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAK 377
Query: 82 CGDYTIPAGASIAIFIYGLHRHPQLW-NNPNQFDPDRFLPSQSS---HRNPSGYVPFSLG 137
G Y IPA I + + + R W +NPN+F P+RF+ +PF G
Sbjct: 378 IGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSG 437
Query: 138 PRGCIGSKYAMLQMKTTISTILRRY 162
R C + ++ + +L ++
Sbjct: 438 RRMCPAMHLGIAMVEIPFANLLYKF 462
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 45.7 bits (108), Expect = 5e-06
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 58 VIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDR 117
V+ ET+R+ I R A +++ YTIP G + +H + + + F+P R
Sbjct: 335 VVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWR 394
Query: 118 FLPSQSSHRNPSG-YVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCK 171
+ S S PS + PF GPR C G + A + + + ++ R+ +P ++ K
Sbjct: 395 W-QSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDK 448
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 44.3 bits (105), Expect = 1e-05
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 57 RVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPD 116
VI ET+R+ + R A +V+ Y IP G + + +H + ++NP QF+P
Sbjct: 319 NVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPW 378
Query: 117 RFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQ 150
R+ Q N S + PF G R C G A L+
Sbjct: 379 RW---QEKDMNNSSFTPFGGGQRLCPGLDLARLE 409
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 42.1 bits (99), Expect = 9e-05
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 39 SPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIY 98
P+ ++ + + VI ET RL + R +++ Y IP G I ++
Sbjct: 313 RPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTR 372
Query: 99 GLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTI 158
++ P L+ +P F+P R+L S + + + F G R C G + ++++ T +
Sbjct: 373 EINYDPFLYPDPMTFNPWRWL--DKSLESHNYFFLFGGGTRLCPGKELGIVEISTFLHYF 430
Query: 159 LRRYK 163
+ RY+
Sbjct: 431 VTRYR 435
>gnl|CDD|113491 pfam04723, GRDA, Glycine reductase complex selenoprotein A. Found
in clostridia, this protein contains one active site
selenocysteine and catalyzes the reductive deamination
of glycine, which is coupled to the esterification of
orthophosphate resulting in the formation of ATP. A
member of this family may also exist in Treponema
denticola.
Length = 150
Score = 30.7 bits (69), Expect = 0.23
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 19 LEAVESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRV--IKETMR 64
L VE RVYH ++ D A DQ ++++ V I E M
Sbjct: 99 LAGVELGLRVYHAVEPEFKAEVDEAIYDDQCGMMEMVLDVDGIIEEMN 146
>gnl|CDD|218511 pfam05227, CHASE3, CHASE3 domain. CHASE3 is an extracellular
sensory domain, which is present in various classes of
transmembrane receptors that are parts of signal
transduction pathways in bacteria. Specifically, CHASE3
domains are found in histidine kinases, adenylate
cyclases, methyl-accepting chemotaxis proteins and
predicted diguanylate cyclases/phosphodiesterases.
Environmental factors that are recognised by CHASE3
domains are not known at this time.
Length = 138
Score = 30.0 bits (68), Expect = 0.40
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 17 PYLEAVESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIA 73
PY EA L+ + D+P +Q +RLD L +I + RL IA
Sbjct: 43 PYEEARARIPEALDRLRQLTADNP------EQQERLDRLEALIDQ--RLEELEETIA 91
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 29.7 bits (67), Expect = 0.93
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 11 NHYSQHPYLEAVESSFRVYHELQDVLGDSPDSAPTYDQLQRL 52
H +P A E F+ E DVL D P YD+ +RL
Sbjct: 37 LHPDANPGDPAAEERFKAVSEAHDVLSD-PAKRKEYDETRRL 77
>gnl|CDD|131724 TIGR02677, TIGR02677, TIGR02677 family protein. Members of this
protein belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria) [Hypothetical
proteins, Conserved].
Length = 494
Score = 29.4 bits (66), Expect = 1.3
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 5 DFEIQRNHYSQHPYLEAVESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKE 61
+F +R Y EA E++ R + G + +A D +QRL L +I +
Sbjct: 80 EFRRKRFLYQLSRIGEAAEAALRTLEQALGSRG-ALQTAALDDIVQRLRELLALIDQ 135
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 28.7 bits (65), Expect = 2.1
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 26/97 (26%)
Query: 38 DSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVI---AR--------SAPYEVQCGDYT 86
+ T+ L+++ L+ V+ E +R+ P P AR A +E++ G+
Sbjct: 319 KAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGE-- 376
Query: 87 IPAGASIAIFIYGLH----RHPQLWNNPNQFDPDRFL 119
++G R P++++ P +F PDRF+
Sbjct: 377 ---------MLFGYQPLVTRDPKVFDRPEEFVPDRFM 404
>gnl|CDD|234255 TIGR03557, F420_G6P_family, F420-dependent oxidoreductase, G6PDH
family. Members of this protein family include
F420-dependent glucose-6-phosphate dehydrogenases
(TIGR03554) and related proteins. All members of this
family come from species that synthesize coenzyme F420,
with the exception of those that belong to TIGR03885, a
clade within this family in which cofactor binding may
instead be directed to FMN [Unknown function, Enzymes
of unknown specificity].
Length = 316
Score = 27.7 bits (62), Expect = 3.6
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 3 GVDFEIQRNHYSQHPYLEAVESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKET 62
G DF +H+ HP+L+ S V+ VLG + T +RL L T V T
Sbjct: 26 GFDFLWISDHF--HPWLDEQGHSPFVW----SVLGAL--AQAT----ERLPLTTAVTCPT 73
Query: 63 MRLFPAAPVIARSA 76
MR PA ++A++A
Sbjct: 74 MRYHPA--IVAQAA 85
>gnl|CDD|238417 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (GTP) for the
phosphoryl transfer, and has a strict requirement for
divalent metal ions for activity. PEPCK's separate into
two phylogenetic groups based on their nucleotide
substrate specificity, this model describes the
GTP-dependent group.
Length = 579
Score = 28.0 bits (63), Expect = 3.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 132 VPFSLGPRGCIGSKYA 147
+PFS+GP G SK
Sbjct: 108 IPFSMGPLGSPISKIG 123
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 27.6 bits (62), Expect = 4.2
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 17/80 (21%)
Query: 28 VYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMR-----------LFPAAPVIARSA 76
V +D+L S Y LD+ ++ R LFP P+ A
Sbjct: 336 VRAIFRDLLDPPQISEDAYR--AALDVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPI 393
Query: 77 PYEVQCGDYTIPAGASIAIF 96
+ D I GA++ F
Sbjct: 394 GDD----DTVILNGAAVPTF 409
>gnl|CDD|225279 COG2421, COG2421, Predicted acetamidase/formamidase [Energy
production and conversion].
Length = 305
Score = 27.3 bits (61), Expect = 4.8
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 9 QRNHYSQHPYLEAVE---SSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKET 62
R+HY P L VE V E D LG + T + + ++D +RV T
Sbjct: 7 TRHHYRFDPSLPPVETVKPGDTVTIETLDALGGQIKAEETLEDIFKID-FSRVHPLT 62
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 27.7 bits (62), Expect = 4.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 29 YHELQDVLGDSPDSAPTYDQLQRLDL 54
Y + Q + D D YD++ LDL
Sbjct: 331 YAKAQGLWYDPADKDAEYDKVLELDL 356
>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase. catalyzes the
formation of phosphoenolpyruvate by decarboxylation of
oxaloacetate.
Length = 586
Score = 27.1 bits (61), Expect = 7.4
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 132 VPFSLGPRGC----IG-----SKYAMLQMKT 153
+PFS+GP G IG S Y + M+
Sbjct: 108 IPFSMGPVGSPFSKIGVQLTDSPYVVHSMRI 138
>gnl|CDD|222682 pfam14326, DUF4384, Domain of unknown function (DUF4384). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and archaea, and is
approximately 80 amino acids in length.
Length = 83
Score = 25.2 bits (56), Expect = 8.4
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 110 PNQFDPDRFLPSQSSHRNPSGYVPFSL---GPRG 140
PN++ D F+ + ++ P F L P G
Sbjct: 37 PNRYSKDNFVKAGKTYTFPDPGDGFRLTVAPPPG 70
>gnl|CDD|213827 TIGR03554, F420_G6P_DH, glucose-6-phosphate dehydrogenase
(coenzyme-F420). This family consists of the
F420-dependent glucose-6-phosphate dehydrogenase of
Mycobacterium and Nocardia. It shows homology to several
other F420-dependent enzymes rather than to the NAD or
NADP-dependent glucose-6-phosphate dehydrogenases
[Energy metabolism, Pentose phosphate pathway].
Length = 331
Score = 26.5 bits (58), Expect = 9.6
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 116 DRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 162
D F P R+ G+ PFSL +G + L + T++ T RY
Sbjct: 37 DHFQP----WRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRY 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.430
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,398,995
Number of extensions: 948430
Number of successful extensions: 873
Number of sequences better than 10.0: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 47
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)