RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16719
(197 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 132 bits (332), Expect = 3e-37
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 4/197 (2%)
Query: 1 MFGVDFEIQRNHYSQHPYLEAVESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIK 60
G + + + + ++ E+ VL + PTYD + +++ L V+
Sbjct: 277 FAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAP--PTYDTVLQMEYLDMVVN 334
Query: 61 ETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLP 120
ET+RLFP A + R +V+ IP G + I Y LHR P+ W P +F P+RF
Sbjct: 335 ETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSK 394
Query: 121 SQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEF 180
+ +P Y PF GPR CIG ++A++ MK + +L+ + P + + ++
Sbjct: 395 KNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ--IPLKLSL 452
Query: 181 GMTMRSLPGNDIRIEPR 197
G ++ +++E R
Sbjct: 453 GGLLQPEKPVVLKVESR 469
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 122 bits (306), Expect = 1e-33
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 8/173 (4%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV-IARSAPYEVQCGDY 85
+V E+ ++G P+ P++D ++ V+ E +R P+ I + + Y
Sbjct: 296 QVQKEIDLIMG--PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGY 353
Query: 86 TIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 145
+IP G ++ +Y +H + W +P F P+RFL S VPFSLG R C+G
Sbjct: 354 SIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEH 413
Query: 146 YAMLQMKTTISTILRRYKI-LPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 197
A ++M + +L+R+ + P + + D++ GMT++ P I E R
Sbjct: 414 LARMEMFLFFTALLQRFHLHFPHEL---VPDLKPRLGMTLQPQPYL-ICAERR 462
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 120 bits (300), Expect = 8e-33
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 4/176 (2%)
Query: 23 ESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSA-PYEVQ 81
+ RV E++ V+G P D ++ VI E RL P + Q
Sbjct: 292 HVTERVQKEIEQVIG--SHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQ 349
Query: 82 CGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGC 141
Y IP + + P+ + PN F+P FL + + + G++PFSLG R C
Sbjct: 350 FRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRIC 409
Query: 142 IGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 197
+G A ++ +TIL+ + I + + E G+ P IR R
Sbjct: 410 LGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVP-PSYQIRFLAR 464
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 101 bits (252), Expect = 4e-26
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 4/172 (2%)
Query: 27 RVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSAP-YEVQCGDY 85
+V E++ V+G + +P + V+ E R P A +++ +Y
Sbjct: 297 KVQEEIERVIGR--NRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNY 354
Query: 86 TIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 145
IP G +I I + + + + NP FDP FL + + ++PFS G R C+G
Sbjct: 355 LIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEA 414
Query: 146 YAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 197
A +++ +++IL+ + + K+L G + P
Sbjct: 415 LAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPF-YQLCFIPI 465
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 93.6 bits (231), Expect = 3e-23
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 41 DSAPTYDQLQRLDLLTRVIKETMRLFPAAPVIARSA-PYEVQCGDYTIPAGASIAIFIYG 99
D P+Y Q+++L + V+ E +RL+P AP + A V G+Y + G + + I
Sbjct: 298 DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQ 357
Query: 100 LHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTI 158
LHR +W ++ +F P+RF S + PF G R CIG ++A+ + + +
Sbjct: 358 LHRDKTIWGDDVEEFRPERFENP--SAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMM 415
Query: 159 LRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 197
L+ + ++ + +T++ ++ + +
Sbjct: 416 LKHFDFEDHTN----YELDIKETLTLKPEGFV-VKAKSK 449
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 86.9 bits (213), Expect = 9e-21
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 79 EVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFL-PSQSSHRNPSGYVPFSLG 137
E + + I G +A +R P+ + +P+ F P R+ P Q N ++PF G
Sbjct: 327 EFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAG 386
Query: 138 PRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 197
C+G+ +A++Q+K S +LR Y+ + M ++ +R R
Sbjct: 387 RHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPE--SYRNDHSKMVVQLAQPAAVRYRRR 444
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 82.5 bits (202), Expect = 3e-19
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 76 APYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFS 135
A + + I G I + +R ++++NP++FD RF P+ ++ F
Sbjct: 321 ALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDITRF---------PNRHLGFG 371
Query: 136 LGPRGCIGSKYAMLQMKTTISTILRRYKIL 165
G C+G A L+MK +L + K +
Sbjct: 372 WGAHMCLGQHLAKLEMKIFFEELLPKLKSV 401
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 80.9 bits (198), Expect = 8e-19
Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 11/147 (7%)
Query: 55 LTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFD 114
++E R +P P + + + G S+ + +YG + P+LW++P++F
Sbjct: 271 REMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFR 330
Query: 115 PDRFLPSQSSHRNPSGYVPFSLG----PRGCIGSKYAMLQMKTTISTILRRYKILPGDKC 170
P+RF N +P G C G + MK ++ ++ + + ++
Sbjct: 331 PERFAE---REENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQS 387
Query: 171 KSLQDIRFEFGMTMRSLPGNDIRIEPR 197
M G + R
Sbjct: 388 LHYS----LARMPSLPESGFVMSGIRR 410
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 77.2 bits (188), Expect = 2e-17
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 11/113 (9%)
Query: 83 GDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCI 142
TI G I +RHP + + FD R + ++ F G C+
Sbjct: 299 DGRTIARGEPILASYAAANRHPDWHEDADTFDATRTVKE---------HLAFGHGVHFCL 349
Query: 143 GSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIE 195
G+ A +++ + ++ R+ L +++ + + +
Sbjct: 350 GAPLARMEVTLALESLFGRFPDL--RLADPAEELPPVPSLISNGHQRLPVLLH 400
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 76.8 bits (187), Expect = 2e-17
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 11/133 (8%)
Query: 63 MRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQ 122
+R R A EV+ G IP +++ + +R P+ + +P++FD R
Sbjct: 280 LRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVTRD---- 335
Query: 123 SSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGM 182
G++ F G C+G A L+ + + + R+ L D+ + +
Sbjct: 336 -----TRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLG--IDADDVVWRRSL 388
Query: 183 TMRSLPGNDIRIE 195
+R + +R++
Sbjct: 389 LLRGIDHLPVRLD 401
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 76.8 bits (187), Expect = 3e-17
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 63 MRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWN-NPNQFDPDRFLPS 121
P + V+ R A +V GD IPAG ++ + L R + ++FD R
Sbjct: 277 RFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRT--- 333
Query: 122 QSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFG 181
+ + ++ F GP C G+ + ++ + + R+ L D ++R +
Sbjct: 334 -----SGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHL--DLAVPAAELRNKPV 386
Query: 182 MTMRSLPGNDIRIEPR 197
+T L +R+
Sbjct: 387 VTQNDLFELPVRLAHH 402
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 74.8 bits (182), Expect = 1e-16
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 101 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 160
+ + F P+RFL + + Y PF LG R C+G +A+L+ + R
Sbjct: 298 VTQRLHFPDGEAFRPERFLEERGTPSGR--YFPFGLGQRLCLGRDFALLEGPIVLRAFFR 355
Query: 161 RYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 197
R+++ P L R +T+R P + PR
Sbjct: 356 RFRLDP------LPFPRVLAQVTLR--PEGGLPARPR 384
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 72.1 bits (175), Expect = 1e-15
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 74 RSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVP 133
R+A +V GD + A I +R +++ NP++F+ +R P P +
Sbjct: 288 RTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRKWP-------PQDPLG 340
Query: 134 FSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSL 187
F G CI A ++ T ST+ +++ L L I + +
Sbjct: 341 FGFGDHRCIAEHLAKAELTTVFSTLYQKFPDL--KVAVPLGKINYTPLNRDVGI 392
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 71.4 bits (173), Expect = 2e-15
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 77 PYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSL 136
+V+ I AG ++ + +R P+++ +P++ D +R +P+ +V F
Sbjct: 291 LEDVEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFER---------SPNPHVSFGF 341
Query: 137 GPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSL 187
GP C G A L+ + + +L R L + +D+ F+ G +R
Sbjct: 342 GPHYCPGGMLARLESELLVDAVLDRVPGL--KLAVAPEDVPFKKGALIRGP 390
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 70.6 bits (171), Expect = 3e-15
Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 11/125 (8%)
Query: 63 MRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQ 122
L R A ++ I G S+ + +R P L + ++ D R
Sbjct: 274 RYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTR----- 328
Query: 123 SSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGM 182
P +V F G C+G+ A L+++T + + RR+ L QD F
Sbjct: 329 ----EPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPAL--RLADPAQDTEFRLTT 382
Query: 183 TMRSL 187
L
Sbjct: 383 PAYGL 387
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 70.3 bits (170), Expect = 5e-15
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 76 APYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFS 135
A +++ +I G + + I R +++ P+ FD R S + +
Sbjct: 294 ARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRD---------TSASLAYG 344
Query: 136 LGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIE 195
GP C G A L+ + + TI RR+ + + F + R++ ++ ++
Sbjct: 345 RGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLK-----ETPVFGYHPAFRNIESLNVILK 399
Query: 196 P 196
P
Sbjct: 400 P 400
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 69.0 bits (167), Expect = 1e-14
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 77 PYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSL 136
++Q GD + G + + + G + P+ + NP + DR NP+ ++ F
Sbjct: 288 TADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDRP--------NPTSHLAFGR 339
Query: 137 GPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSL 187
G C GS + I +L++ + D + + + R
Sbjct: 340 GQHFCPGSALGRRHAQIGIEALLKKMPGV--DLAVPIDQLVWRTRFQRRIP 388
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 67.5 bits (163), Expect = 4e-14
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 58 VIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDR 117
V + L P R A +V I AG + I +R L +P+ D +R
Sbjct: 279 VNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDANR 338
Query: 118 FLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 163
V F G C+G+ A ++ T+ RR+
Sbjct: 339 A---------AVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRFP 375
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 65.6 bits (158), Expect = 1e-13
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 53 DLLTRVIKETMRLFPAAPVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQ 112
+ ++E +R P R +V+ D I G + ++I +R +++ +P+
Sbjct: 238 KGALKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDS 297
Query: 113 FDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKS 172
F PDR P+ ++ F G C+G+ A L+ + + +++++ K
Sbjct: 298 FIPDR---------TPNPHLSFGSGIHLCLGAPLARLEARIALEEFAKKFRVKEIVKK-- 346
Query: 173 LQDIRFEFGMTMRSLPGNDIRIE 195
+ I E R L +R+E
Sbjct: 347 -EKIDNEVLNGYRKLV---VRVE 365
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 65.1 bits (157), Expect = 3e-13
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 9/86 (10%)
Query: 78 YEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLG 137
+ + + G I + + P D R + F G
Sbjct: 293 SDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSR---------QKVSHTTFGHG 343
Query: 138 PRGCIGSKYAMLQMKTTISTILRRYK 163
C+G A ++ T+ L R
Sbjct: 344 SHLCLGQHLARREIIVTLKEWLTRIP 369
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 64.5 bits (155), Expect = 4e-13
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 69 APVIARSAPYEVQCGDYTIPAGASIAIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNP 128
R V+ GD TI G + ++I +R +++++ +F PDR NP
Sbjct: 254 VMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDR---------NP 304
Query: 129 SGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILP 166
+ ++ F G C+G+ A L+ + I +R++ +
Sbjct: 305 NPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFRHIE 342
>d1fc6a4 c.14.1.2 (A:78-156,A:249-463) Photosystem II D1 C-terminal
processing protease {Algae (Scenedesmus obliquus)
[TaxId: 3088]}
Length = 294
Score = 26.3 bits (57), Expect = 2.8
Identities = 13/79 (16%), Positives = 26/79 (32%)
Query: 1 MFGVDFEIQRNHYSQHPYLEAVESSFRVYHELQDVLGDSPDSAPTYDQLQRLDLLTRVIK 60
G + R Y + ++ ++ ++ VL D +L L T+V
Sbjct: 24 FNGQSWFKLRETYLKKEPMDRRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRGTKVTI 83
Query: 61 ETMRLFPAAPVIARSAPYE 79
+ + V A + P
Sbjct: 84 NPVTFTTCSNVAAAALPPG 102
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 24.3 bits (53), Expect = 3.6
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 158 ILRRYKILPGDKCKSLQDIRFEFGMTM 184
+LR + + +L+++ +F +T
Sbjct: 13 VLRMRFGIDMNTDYTLEEVGKQFDVTR 39
>d1vq0a1 d.193.1.1 (A:1-230) Heat shock protein 33, Hsp33
{Thermotoga maritima [TaxId: 2336]}
Length = 230
Score = 25.3 bits (55), Expect = 5.5
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 30 HELQDVLGDSPDSAPTYDQLQRLDLLTRVIKETMRLFPAAPV 71
++ + + P + + + + LD+L R+ E + A +
Sbjct: 186 EMIEKNIKNLPSISKLFQEAEPLDVLERIFGEKVGFVETAEI 227
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica
charantia) [TaxId: 3673]}
Length = 190
Score = 24.3 bits (52), Expect = 9.4
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 144 SKYAMLQMKTTISTILRRYKILPGDKCKSLQDIR 177
++ I LR + P + KS Q I+
Sbjct: 103 KLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIK 136
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima
[TaxId: 2336]}
Length = 87
Score = 23.5 bits (51), Expect = 9.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 158 ILRRYKILPGDKCKSLQDIRFEFGMT 183
+LR L K K+L+++ F +T
Sbjct: 26 VLRMRYGLLDGKPKTLEEVGQYFNVT 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.430
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,208
Number of extensions: 35212
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 27
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)