BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1672
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 180/415 (43%), Gaps = 96/415 (23%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CP+ C C + + + C + L +P + T+ L++ N++Q++ + F+ L +
Sbjct: 6 CPAACSCSNQASR--VICTRRELAEVPASIPVN-TRYLNLQENSIQVIRTDTFKH--LRH 60
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L+ L L++ + +I+ GA +GL +L ++L DN LT++P+ F+ + LR+L L NPI
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 137 KIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKS----------------------L 173
I AF VP L +LD+ E RLE+IS AF G + L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 180
Query: 174 ESIKLNGNRLS-------------------HFPVRSVE---------------------- 192
E ++L+GNRL H V ++E
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 193 -------PLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVF 243
PL +L + L+ NPW C+C++ + WL + N C P L G+
Sbjct: 241 LPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYI 300
Query: 244 SDLHADDFACKPEIRM----DSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNN 298
+L F C + + D E +++E + CR + +++W NG L+
Sbjct: 301 GELDQSHFTCYAPVIVEPPTDLNVTEGMAAE---LKCRTGT-SMTSVNWLTPNGTLM--- 353
Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
T S RI V+ G +L TN D+G++ C+ N AG A+ TL V
Sbjct: 354 THGSYRVRISVLHDG------TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 158/332 (47%), Gaps = 25/332 (7%)
Query: 32 MECRDKFLITIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIG 88
+E D L TIP L+++ L + N ++ +P AF R + +L++L L +
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGELKRLS 174
Query: 89 QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
I GA +GL+NL ++L+ L IP+LT + L +L+L+ N +S I G+FQ +
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPNLT--PLIKLDELDLSGNHLSAIRPGSFQGLMH 232
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
L KL M +S+++ I AF +SL I L N L+ P PL L I LH NPW
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Query: 209 CDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRM----DSR 262
C+C++ + W+ D N C P L G+ +L + F C + + D
Sbjct: 293 CNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLN 352
Query: 263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E +++E + CR S ++SW ++ + A+ RI V+ G +L
Sbjct: 353 VTEGMAAE---LKCRA-STSLTSVSWITPNGTVMTHGAYKV--RIAVLSDG------TLN 400
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
TN D+G + C+ N G A+ TL VT
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
R LNL N I I+ +F+ + L L +S + + I AF G +L +++L NRL+
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 186 FPVRSVEPLLKLMMIELHDNP 206
P + L KL + L +NP
Sbjct: 127 IPNGAFVYLSKLKELWLRNNP 147
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 1/202 (0%)
Query: 50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
L + LD+S +N Q+ + GL L L L RC + ++ G GL L + L DN
Sbjct: 81 LLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
L ++P TF+ + L L L N IS + + AF+ + L +L + ++R+ H+ P AF
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQ 229
L ++ L N LS P ++ PL L + L+DNPWVCDC R + WL + +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259
Query: 230 PACTGPERLSGKVFSDLHADDF 251
C+ P+RL+G+ L A+D
Sbjct: 260 VPCSLPQRLAGRDLKRLAANDL 281
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE-SRLEH 161
I L N ++ +P+ +F++ R L L L N +++I+ AF + L +LD+S+ ++L
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ P F G L ++ L+ L L L + L DN
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 174 ESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ I L+GNR+SH P S L ++ LH N
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSN 66
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 1/202 (0%)
Query: 50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
L + LD+S +N Q+ + GL L L L RC + ++ G GL L + L DN
Sbjct: 80 LLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
L ++P TF+ + L L L N IS + + AF+ + L +L + ++R+ H+ P AF
Sbjct: 139 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQ 229
L ++ L N LS P ++ PL L + L+DNPWVCDC R + WL + +
Sbjct: 199 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 258
Query: 230 PACTGPERLSGKVFSDLHADDF 251
C+ P+RL+G+ L A+D
Sbjct: 259 VPCSLPQRLAGRDLKRLAANDL 280
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE-SRLEH 161
I L N ++ +P+ +F++ R L L L N +++I+ AF + L +LD+S+ ++L
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ P F G L ++ L+ L L L + L DN
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 174 ESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ I L+GNR+SH P S L ++ LH N
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSN 65
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 155/337 (45%), Gaps = 30/337 (8%)
Query: 32 MECRDKFLITIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IG 88
+E D +L IP L+++ L + N ++ +P AF R +L +L L +
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLMRLDLGELKKLE 185
Query: 89 QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
I GA +GL NL ++L + +P+LT + L +L ++ N +I G+F +
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDMPNLT--PLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
L KL + S++ I AF G SL + L N LS P PL L+ + LH NPW
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Query: 209 CDCNMRSIKMWLADKKNVPVQPACTG----PERLSGKVFSDLHADDFACKPEIRMDS-RY 263
CDC++ + WL ++ +P C G P + G+ ++ F C MD+ R
Sbjct: 304 CDCDILWLAWWL--REYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRD 361
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSS---YQRIFVIEQGEYERKSS 320
+ A + CR P +++ W LL N T S + RI V+ G +
Sbjct: 362 LNISEGRMAELKCRTP--PMSSVKW-----LLPNGTVLSHASRHPRISVLNDG------T 408
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
L ++ SD+G + C+ N AG ++A+ L V+ G
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 8/190 (4%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C + K + C + L +P+ S T+ L++ NN+Q++ + FR L +
Sbjct: 46 CPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSN-TRYLNLMENNIQMIQADTFRH--LHH 100
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L+ L L R I QI+ GA +GL +L ++L DN LT IPS F+ + LR+L L NPI
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 137 KIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
I AF VP L++LD+ E +LE+IS AF G +L+ + L + P ++ PL+
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLV 218
Query: 196 KLMMIELHDN 205
L +E+ N
Sbjct: 219 GLEELEMSGN 228
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
R LNL N I I+ F+ + L L + + + I AF G SL +++L N L+
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 186 FPVRSVEPLLKLMMIELHDNP 206
P + E L KL + L +NP
Sbjct: 138 IPSGAFEYLSKLRELWLRNNP 158
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 3/203 (1%)
Query: 50 LTQVLDMSGN-NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD 108
L + LD+S N L+++ FR GL +L L L RC + ++ G GL L + L D
Sbjct: 80 LLEQLDLSDNAQLRVVDPTTFR--GLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFT 168
N L ++P TF+ + L L L N I + + AF+ + L +L + ++ + + P AF
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR 197
Query: 169 GAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPV 228
L ++ L N LS P + PL L + L+DNPWVCDC R + WL +
Sbjct: 198 DLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 257
Query: 229 QPACTGPERLSGKVFSDLHADDF 251
+ C P+RL+G+ L A D
Sbjct: 258 EVPCNLPQRLAGRDLKRLAASDL 280
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE-SRLEH 161
I L N ++ +P+ +FQS R L L L N ++ I+ AF + L +LD+S+ ++L
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ P F G L ++ L+ L L L + L DN
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 134/310 (43%), Gaps = 78/310 (25%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CP+ C C + + + C + L +P + T+ L++ N++Q++ + F+ L +
Sbjct: 6 CPAACSCSNQASR--VICTRRELAEVPASIPVN-TRYLNLQENSIQVIRTDTFKH--LRH 60
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L+ L L++ + +I+ GA +GL +L ++L DN LT++P+ F+ + LR+L L NPI
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 137 KIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKS----------------------L 173
I AF VP L +LD+ E RLE+IS AF G + L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 180
Query: 174 ESIKLNGNRLS-------------------HFPVRSVE---------------------- 192
E ++L+GNRL H V ++E
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 193 -------PLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVF 243
PL +L + L+ NPW C+C++ + WL + N C P L G+
Sbjct: 241 LPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYI 300
Query: 244 SDLHADDFAC 253
+L F C
Sbjct: 301 GELDQSHFTC 310
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 143/318 (44%), Gaps = 29/318 (9%)
Query: 39 LITIPEAPESEL--TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGAL 95
L +IP S L VL + N+ + +F+R L L+ L ++ ++ + L
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR--LYRLKVLEISHWPYLDTMTPNCL 221
Query: 96 DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
GL NL + ++ LT++P L + + +LR LNL+ NPIS IE + L ++ +
Sbjct: 222 YGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS 215
+L + P AF G L + ++GN+L+ + L + L NP CDC +
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-- 338
Query: 216 IKMWLADKK---NV-PVQPACTGPERLSGKVFSD----LHADDFACKPEIRMDSRYVEAV 267
+W+ ++ N QP C PE + GK F D L + F C+ D + +
Sbjct: 339 --LWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVF 396
Query: 268 SSENATV--VCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
E TV VCR D PP AI W + L+ + S R+ V G E +
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLV---SAKSNGRLTVFPDGTLEVRY------ 447
Query: 326 AQESDSGRFYCVAENRAG 343
AQ D+G + C+A N G
Sbjct: 448 AQVQDNGTYLCIAANAGG 465
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CP C C + + + C K + +PE +E T++LD+ N ++ L ++ F A +
Sbjct: 3 CPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTE-TRLLDLGKNRIKTLNQDEF--ASFPH 57
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L++L L + ++ GA + L NL + L N L IP F + L L+++ N I
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
+ FQ + L L++ ++ L +IS AF+G SLE + L L+ P ++ L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 197 LMMIEL 202
L+++ L
Sbjct: 178 LIVLRL 183
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 24/254 (9%)
Query: 22 ICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRR---------- 71
+C K ++C K L IP ++ T+ LD+ N L LP +AF R
Sbjct: 11 VCSCNNNKNSVDCSSKKLTAIPSNIPAD-TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN 69
Query: 72 --------AGLL----NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTF 119
AG+ NL+ L++ + + G D L NL E+ L N L S+P F
Sbjct: 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 120 QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN 179
S+ L L+L N + + KG F + L +L + ++L+ + AF L+++KL+
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 180 GNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADKKNVPVQPACTGPERL 238
N+L P + + L KL M++L +NPW C CN + + WL K + + T
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK 249
Query: 239 SGKVFSDLHADDFA 252
GK ++ D A
Sbjct: 250 GGKAVLEITEKDAA 263
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 91 DSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV 150
D G N +D S LT+IPS + L+L N +S + AF + L
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADT---KKLDLQSNKLSSLPSKAFHRLTKLR 64
Query: 151 KLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L +++++L+ + F K+LE++ + N+L P+ + L+ L + L N
Sbjct: 65 LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL L L + + +G D LTNL E+ L +N L S+P F + L LNLA N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
+ + KG F + L +LD+S ++L+ + F L+ ++L N+L P +
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 194 LLKLMMIELHDNPWVCDC-NMRSIKMWL 220
L L I LHDNPW C C +R + W+
Sbjct: 204 LTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 4/210 (1%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
C + C GK+ ++C+ K L ++P ++ T+ LD+ L L FR GL
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPAD-TEKLDLQSTGLATLSDATFR--GLTK 60
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L L L + + +G D LT L + L++N L S+P F + L L L N +
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
+ G F + L +L ++ ++L+ I AF +L+++ L+ N+L P + + L K
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 197 LMMIELHDNPWVCD-CNMRSIKMWLADKKN 225
L I L N + C C + + W+ + N
Sbjct: 181 LQTITLFGNQFDCSRCEILYLSQWIRENSN 210
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 4/210 (1%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
C + C GK+ ++C+ K L ++P ++ T+ LD+ L L FR GL
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPAD-TEKLDLQSTGLATLSDATFR--GLTK 60
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L L L + + +G D LT L + L++N L S+P F + L L L N +
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
+ G F + L +L ++ ++L+ I AF +L+++ L+ N+L P + + L K
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 197 LMMIELHDNPWVCD-CNMRSIKMWLADKKN 225
L I L N + C C + W+ + N
Sbjct: 181 LQTITLFGNQFDCSRCETLYLSQWIRENSN 210
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CP+ C C ++CR K L IP +T++ + N ++++P
Sbjct: 5 CPAACTC----SNNIVDCRGKGLTEIPTNLPETITEI-RLEQNTIKVIP----------- 48
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
GA L IDLS+N ++ + FQ +R L L L N I+
Sbjct: 49 ---------------PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
++ K F+ + L L ++ +++ + +AF +L + L N+L + PL
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 197 LMMIELHDNPWVCDCNMRSIKMWLADKKNV-PVQPA---CTGPERLSGKVFSDLHADDFA 252
+ + L NP++CDC+++ WLAD + P++ + CT P RL+ K + + F
Sbjct: 154 IQTMHLAQNPFICDCHLK----WLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFR 209
Query: 253 C 253
C
Sbjct: 210 C 210
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CP+ C C ++CR K L IP +T++ + N ++++P
Sbjct: 5 CPAACTC----SNNIVDCRGKGLTEIPTNLPETITEI-RLEQNTIKVIP----------- 48
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
GA L IDLS+N ++ + FQ +R L L L N I+
Sbjct: 49 ---------------PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
++ K F+ + L L ++ +++ + +AF +L + L N+L + PL
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 197 LMMIELHDNPWVCDCNMRSIKMWLADKKNV-PVQPA---CTGPERLSGKVFSDLHADDFA 252
+ + L NP++CDC+++ WLAD + P++ + CT P RL+ K + + F
Sbjct: 154 IQTMHLAQNPFICDCHLK----WLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFR 209
Query: 253 C 253
C
Sbjct: 210 C 210
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CP+ C+C + C + L +P++ S T +LD+S NNL L E + L N
Sbjct: 12 CPANCLC----ASNILSCSKQQLPNVPQSLPS-YTALLDLSHNNLSRLRAE-WTPTRLTN 65
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L L L+ H+ I S A + NL +DLS N L ++ F ++ L L L N I
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLES---IKLNGNRLSHFPVRSVEP 193
+++ AF+ + L KL +S++++ E L + L+ N+L P+ ++
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
Query: 194 LLKLMM--IELHDNPWVCDCNMRSI 216
L + + LH+NP CDC + +
Sbjct: 186 LPAWVKNGLYLHNNPLECDCKLYQL 210
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C +EC + ++P ++ T LD+ N+L+ LP
Sbjct: 1 CPSRCSCSGTT----VECYSQGRTSVPTGIPAQ-TTYLDLETNSLKSLP----------- 44
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
+G D LT+L ++ L N L S+P+ F + L LNL+ N +
Sbjct: 45 ---------------NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
+ G F + L +L ++ ++L+ + F L+ ++L N+L P + L
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 197 LMMIELHDNPWVCDC-NMRSIKMWLADKKNV 226
L I LHDNPW C C +R + W+ V
Sbjct: 150 LQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 180
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 41/230 (17%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C ++CR K ++P + Q+L + N + L F L+N
Sbjct: 13 CPSQCSCSGTT----VDCRSKRHASVPAGIPTN-AQILYLHDNQITKLEPGVFD--SLIN 65
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L++L+L +G + G D LT L +DL N LT +PS F + L++L + N ++
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
++ +G RL H L + L+ N+L P + + L
Sbjct: 126 ELPRGI--------------ERLTH-----------LTHLALDQNQLKSIPHGAFDRLSS 160
Query: 197 LMMIELHDNPWVCDC-NMRSIKMWLADKKNVPVQPACTGPERLSGKVFSD 245
L L NPW C+C ++ ++ W+AD ++ + R GK +D
Sbjct: 161 LTHAYLFGNPWDCECRDIMYLRNWVADHTSIAM--------RWDGKAVND 202
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
++ E+ L N T +P + + L ++L+ N IS + +F + L+ L +S +RL
Sbjct: 32 DVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 160 EHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMW 219
I P F G KSL + L+GN +S P + L L + + NP CDCNM+ + W
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150
Query: 220 LADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
+ + P C GP ++ K+ + F C
Sbjct: 151 VKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTC 184
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL L L + + +G D LTNL E+ L +N L S+P F + L L L N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
+ + KG F + L +LD+ ++L+ + F L+ + LN N+L P +
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 194 LLKLMMIELHDNPWVCDC-NMRSIKMWLA 221
L L I L +NPW C C ++ + W++
Sbjct: 204 LTSLTHIWLLNNPWDCACSDILYLSRWIS 232
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 103 EIDLSDNLLTSIPSL-TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
E+ L++N T + + F+ + LR +N + N I+ IE+GAF+ G+ ++ ++ +RLE+
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN---------------- 205
+ + F G +SL+++ L NR++ S L + ++ L+DN
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 206 --------PWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
P+ C+C + + WL K+ V P C P L D+ DF C
Sbjct: 156 STLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTC 211
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 56 MSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIP 115
++ N L+ + + F+ GL +L+ L L I + + + GL+++ + L DN +T++
Sbjct: 88 LTSNRLENVQHKMFK--GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145
Query: 116 SLTFQSVRFLRDLNLARNPIS 136
F ++ L LNL NP +
Sbjct: 146 PGAFDTLHSLSTLNLLANPFN 166
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 103 EIDLSDNLLTSIPS-LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
E+ L+DN L I S F + L L L RN ++ IE AF+ + +L + E++++
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLA 221
IS + F G L+++ L N++S S E L L + L NP+ C+C++ WL
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR 152
Query: 222 DKKNVPVQPACTGPERLSGKVFSDLHADDFACKPE 256
K C P ++ DL +F C E
Sbjct: 153 KKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 54 LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTS 113
L++ N L + AF A ++Q+L L I +I + GL L ++L DN ++
Sbjct: 59 LELKRNQLTGIEPNAFEGAS--HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 114 IPSLTFQSVRFLRDLNLARNPIS 136
+ +F+ + L LNLA NP +
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFN 139
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 67 EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR 126
++FR+ LLNL L I +ID+ A + ++ + N + +P FQ+V L
Sbjct: 66 DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 127 DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
L L RN +S + +G F P L L MS + LE I + F SL++++L+ NRL+H
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%)
Query: 42 IPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNL 101
+P A QV ++ N+LQI + + A +QKL++ I + + L
Sbjct: 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119
Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+ L N L+S+P F + L L+++ N + +IE FQ L L +S +RL H
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Query: 162 I 162
+
Sbjct: 180 V 180
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 54 LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTS 113
L MS NNL+ + + F+ +LQ L L+ + +D L + +L ++S NLL++
Sbjct: 146 LSMSNNNLERIEDDTFQATT--SLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200
Query: 114 --IPSLTFQSVRFLRDLNLARNPISKIEKGAFQF-------------VPGLVKLDMSESR 158
IP + +N+ R P++ +E + PGLV++D+S +
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259
Query: 159 LEHISPEAFTGAKSLESIKLNGNRL 183
LE I F + LE + ++ NRL
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRL 284
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 67 EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR 126
++FR+ LLNL L I +ID+ A + ++ + N + +P FQ+V L
Sbjct: 72 DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126
Query: 127 DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
L L RN +S + +G F P L L MS + LE I + F SL++++L+ NRL+H
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%)
Query: 42 IPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNL 101
+P A QV ++ N+LQI + + A +QKL++ I + + L
Sbjct: 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125
Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+ L N L+S+P F + L L+++ N + +IE FQ L L +S +RL H
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185
Query: 162 I 162
+
Sbjct: 186 V 186
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 53 VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT 112
L MS NNL+ + + F+ +LQ L L+ + +D L + +L ++S NLL+
Sbjct: 151 TLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205
Query: 113 S--IPSLTFQSVRFLRDLNLARNPISKIEKGAFQF-------------VPGLVKLDMSES 157
+ IP + +N+ R P++ +E + PGLV++D+S +
Sbjct: 206 TLAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264
Query: 158 RLEHISPEAFTGAKSLESIKLNGNRL 183
LE I F + LE + ++ NRL
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 27/175 (15%)
Query: 47 ESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
E+ + D+S + + L K F + +L++L LA+ I +ID A GLT+L++++L
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 107 SDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEA 166
S N L SI S F++ + K+E LD+S + + + ++
Sbjct: 331 SQNFLGSIDSRMFEN-------------LDKLEV-----------LDLSYNHIRALGDQS 366
Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
F G +L+ + L+ N+L P + L L I LH NPW C C + + WL
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI 162
++L N L S+P F + L L+L++N I + G F + L L + E++L+ +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
F L+ + L+ N+L P + L L I LH NPW C C + + WL
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 150
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
P+ P+ T +L +S N L F A L+ L +L L RC + Q+D
Sbjct: 27 PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93 GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
G LD L L +D+S N LTS+P + + L++L L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
G P L KL ++ ++L + G ++L+++ L N L P L L
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
LH NPW+C+C + + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
P+ P+ T +L +S N L F A L+ L +L L RC + Q+D
Sbjct: 27 PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93 GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
G LD L L +D+S N LTS+P + + L++L L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
G P L KL ++ ++L + G ++L+++ L N L P L L
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
LH NPW+C+C + + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
L L N I+K+E G F + L +L + ++L I F L + LN N L P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 188 VRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWLADKKNVPVQPACTGPERLSGKVFSD 245
+ + L L I L++NPW C+C ++ ++ W+AD ++ + R GK +D
Sbjct: 98 RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVM--------RWDGKAVND 148
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C + + C++ L ++P ++ Q L ++ N + L F L+N
Sbjct: 6 CPSQCSCD----QTLVNCQNIRLASVPAGIPTD-KQRLWLNNNQITKLEPGVFDH--LVN 58
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
LQ+L+ + I +G D LT L ++DL+DN L SIP F +++ L + L NP
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
P+ P+ T +L +S N L F A L+ L +L L RC + Q+D
Sbjct: 27 PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93 GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
G LD L L +D+S N LTS+P + + L++L L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
G P L KL ++ ++L + G ++L+++ L N L P L L
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
LH NPW+C+C + + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
P+ P+ T +L +S N L F A L+ L +L L RC + Q+D
Sbjct: 27 PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93 GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
G LD L L +D+S N LTS+P + + L++L L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
G P L KL ++ ++L + G ++L+++ L N L P L L
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
LH NPW+C+C + + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
P+ P+ T +L +S N L F A L+ L +L L RC + Q+D
Sbjct: 28 PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 80
Query: 93 GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
G LD L L +D+S N LTS+P + + L++L L N + +
Sbjct: 81 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
G P L KL ++ + L + G ++L+++ L N L P L L
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 199
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
LH NPW+C+C + + WL D
Sbjct: 200 FAFLHGNPWLCNCEILYFRRWLQD 223
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
P+ P+ T +L +S N L F A L+ L +L L RC + Q+D
Sbjct: 27 PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93 GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
G LD L L +D+S N LTS+P + + L++L L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
G P L KL ++ + L + G ++L+++ L N L P L L
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
LH NPW+C+C + + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
P+ P+ T +L +S N L F A L+ L +L L RC + Q+D
Sbjct: 27 PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93 GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
G LD L L +D+S N LTS+P + + L++L L N + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
G P L KL ++ + L + G ++L+++ L N L P L L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
LH NPW+C+C + + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 89 QIDSGALDG--LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV 146
Q+ S L G L L +D+S N LTS+P + + L++L L N + + G
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 147 PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
P L KL ++ + L + G ++L+++ L N L P L L LH NP
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGNP 206
Query: 207 WVCDCNMRSIKMWLAD 222
W+C+C + + WL D
Sbjct: 207 WLCNCEILYFRRWLQD 222
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
L +D+S N LTS+P + + L++L L N + + G P L KL ++ + L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWL 220
+ G ++L+++ L N L P L L LH NPW+C+C + + WL
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGNPWLCNCEILYFRRWL 220
Query: 221 AD 222
D
Sbjct: 221 QD 222
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
L +D+S N LTS+P + + L++L L N + + G P L KL ++ + L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWL 220
+ G ++L+++ L N L P L L LH NPW+C+C + + WL
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGNPWLCNCEILYFRRWL 220
Query: 221 AD 222
D
Sbjct: 221 QD 222
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
+ LD+S N + + GL L+ L ++ Q+ + L NLI +D+S
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ F + L L +A N + F + L LD+S+ +LE +SP AF
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
SL+ + + N+L P + L L I LH NPW C C + + WL
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 544
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DLS N L + S +F S L+ L+L+R I IE GA+Q + L L ++ + ++ ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
AF+G SL+ +++ N L +FP+ ++ L +L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
T+ LD+S N L+ L +F LQ L L+RC I I+ GA
Sbjct: 30 TKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDGA---------------- 71
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
+QS+ L L L NPI + GAF + L KL E+ L +
Sbjct: 72 --------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 171 KSLESIKLNGNRLSHFPV 188
K+L+ + + N + F +
Sbjct: 124 KTLKELNVAHNLIQSFKL 141
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
QVLD+S +Q + A++ L +L L L I + GA GL++L ++ + L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEK-GAFQFVPGLVKLDMSESRLEHI 162
S+ + ++ L++LN+A N I + F + L LD+S ++++ I
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
++L+L+ NP+ + +F P L LD+S ++ I A+ L ++ L GN
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---- 86
Query: 186 FPVRSV 191
P++S+
Sbjct: 87 -PIQSL 91
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 104 IDLSDNLLTSIPS--LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+D S L S+P+ T V +L D N I+K+E G F + L +LD+ ++L
Sbjct: 14 VDCSGKSLASVPTGIPTTTQVLYLYD-----NQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
+ F L + LN N+L P + + L L I L +NPW C C ++ + W+
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128
Query: 221 A 221
+
Sbjct: 129 S 129
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C ++C K L ++P + TQVL + N + L F R L
Sbjct: 3 CPSQCSCSGTT----VDCSGKSLASVPTGIPTT-TQVLYLYDNQITKLEPGVFDR--LTQ 55
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
L +L L + + +G D LT L ++ L+DN L SIP F +++ L + L NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 53 VLDMSGNNLQILPKEAFRRAGL-LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+D SG +L +P G+ Q L+L I +++ G D LT L +DL +N L
Sbjct: 13 TVDCSGKSLASVP------TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
T +P+ F + L L+L N + I +GAF + L +
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 104 IDLSDNLLTSIPSL--TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+D S L S+P+ T V +L D N I+K+E G F + L +LD+ ++L
Sbjct: 22 VDCSGKSLASVPTGIPTTTQVLYLYD-----NQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
+ F L + LN N+L P + + L L I L +NPW C C ++ + W+
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136
Query: 221 A 221
+
Sbjct: 137 S 137
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C ++C K L ++P + TQVL + N + L F R L
Sbjct: 11 CPSQCSCSGTT----VDCSGKSLASVPTGIPTT-TQVLYLYDNQITKLEPGVFDR--LTQ 63
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
L +L L + + +G D LT L ++ L+DN L SIP F +++ L + L NP
Sbjct: 64 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 53 VLDMSGNNLQILPKEAFRRAGL-LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+D SG +L +P G+ Q L+L I +++ G D LT L +DL +N L
Sbjct: 21 TVDCSGKSLASVP------TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
T +P+ F + L L+L N + I +GAF + L +
Sbjct: 75 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 104 IDLSDNLLTSIPSL--TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+D S L S+P+ T V +L D N I+K+E G F + L +LD+ ++L
Sbjct: 14 VDCSGKSLASVPTGIPTTTQVLYLYD-----NRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
+ F L + LN N+L P + + L L I L +NPW C C ++ + W+
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWI 128
Query: 221 A 221
+
Sbjct: 129 S 129
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C ++C K L ++P + TQVL + N + L F R L
Sbjct: 3 CPSQCSCSGTT----VDCSGKSLASVPTGIPTT-TQVLYLYDNRITKLEPGVFDR--LTQ 55
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
L +L L + + +G D LT L ++ L+DN L SIP F ++R L + L NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 53 VLDMSGNNLQILPKEAFRRAGL-LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+D SG +L +P G+ Q L+L I +++ G D LT L +DL +N L
Sbjct: 13 TVDCSGKSLASVP------TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
T +P+ F + L L+L N + I +GAF + L +
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 53 VLDMSGNNL-QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
LD+SGN + + K F +Q L L+ + + G+ G TN + D
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY----NMGSSFGHTNFKDPD------ 265
Query: 112 TSIPSLTFQSVRF--LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ TF+ + ++ +L+++ I + K F L +L ++++ + I AF G
Sbjct: 266 ----NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
L+ + L+ N+L P + L L I LH NPW C C + + WL
Sbjct: 322 LTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 373
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 26/177 (14%)
Query: 36 DKFLITIPEAPESELTQVLDMSGNNLQ------ILPKEAFRRAGLLNLQKLFLARCHIGQ 89
D L +I E E+ +++ D+ ++ ++ FR GL +L L L Q
Sbjct: 36 DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR--GLSSLIILKLDYNQFLQ 93
Query: 90 IDSGALDGLTNLIEIDLSD-NLLTSIPSLT-FQSVRFLRDLNLARNPISKIEKGAFQFVP 147
+++GA +GL NL + L+ NL ++ S F+ + L L L N I KI+ +F
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF---- 149
Query: 148 GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHD 204
L+M R H+ F KS+ L + HF LL+L I L D
Sbjct: 150 ---FLNM---RRFHVLDLTFNKVKSICEEDLLNFQGKHF------TLLRLSSITLQD 194
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 41 TIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
TI + L+ + L ++GN +Q L AF +GL +LQKL ++ +++ + L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 99 TNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKL 152
L E++++ NL+ S +P F ++ L L+L+ N I I + Q + L
Sbjct: 125 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC- 211
D+S + + I P AF + L+ + L+ N+L P + L L I LH NPW C C
Sbjct: 184 DLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Query: 212 NMRSIKMWL 220
+ + WL
Sbjct: 243 RIDYLSRWL 251
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DLS N L + S +F S L+ L+L+R I IE GA+Q + L L ++ + ++ ++
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
AF+G SL+ +++ N L +FP+ ++ L +L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 130
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
T+ LD+S N L+ L +F LQ L L+RC I I+ GA
Sbjct: 31 TKNLDLSWNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDGA---------------- 72
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
+QS+ L L L NPI + GAF + L KL E+ L +
Sbjct: 73 --------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 171 KSLESIKLNGNRLSHFPV 188
K+L+ + + N + F +
Sbjct: 125 KTLKELNVAHNLIQSFKL 142
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 114 IPSLTFQSVRF------------LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+P++T+Q + ++L+L+ NP+ + +F P L LD+S ++
Sbjct: 8 VPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQT 67
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRS---VEPLLKLMMIE 201
I A+ L ++ L GN + + + + L KL+ +E
Sbjct: 68 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 41 TIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
TI + L+ + L ++GN +Q L AF +GL +LQKL ++ +++ + L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 99 TNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKL 152
L E++++ NL+ S +P F ++ L L+L+ N I I + Q + L
Sbjct: 126 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 184
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC- 211
D+S + + I P AF + L+ + L+ N+L P + L L I LH NPW C C
Sbjct: 185 DLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Query: 212 NMRSIKMWL 220
+ + WL
Sbjct: 244 RIDYLSRWL 252
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DLS N L + S +F S L+ L+L+R I IE GA+Q + L L ++ + ++ ++
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
AF+G SL+ +++ N L +FP+ ++ L +L
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 131
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
T+ LD+S N L+ L +F LQ L L+RC I I+ GA
Sbjct: 32 TKNLDLSWNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDGA---------------- 73
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
+QS+ L L L NPI + GAF + L KL E+ L +
Sbjct: 74 --------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 171 KSLESIKLNGNRLSHFPV 188
K+L+ + + N + F +
Sbjct: 126 KTLKELNVAHNLIQSFKL 143
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 114 IPSLTFQSVRF------------LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+P++T+Q + ++L+L+ NP+ + +F P L LD+S ++
Sbjct: 9 VPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQT 68
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRS---VEPLLKLMMIE 201
I A+ L ++ L GN + + + + L KL+ +E
Sbjct: 69 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 41 TIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
TI + L+ + L ++GN +Q L AF +GL +LQKL ++ +++ + L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 99 TNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKL 152
L E++++ NL+ S +P F ++ L L+L+ N I I + Q + L
Sbjct: 125 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC- 211
D+S + + I P AF + L+ + L+ N+L P + L L I LH NPW C C
Sbjct: 184 DLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Query: 212 NMRSIKMWL 220
+ + WL
Sbjct: 243 RIDYLSRWL 251
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DLS N L + S +F S L+ L+L+R I IE GA+Q + L L ++ + ++ ++
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
AF+G SL+ +++ N L +FP+ ++ L +L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 130
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 29/157 (18%)
Query: 33 ECRDKFLITIPE-APESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID 91
+C + IP+ P S T+ LD+S N L+ L +F LQ L L+RC I I+
Sbjct: 14 QCEELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 69
Query: 92 SGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVK 151
GA +QS+ L L L NPI + GAF + L K
Sbjct: 70 DGA------------------------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV 188
L E+ L + K+L+ + + N + F +
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 142
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
++L+L+ NP+ + +F P L LD+S ++ I A+ L ++ L GN +
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 186 FPVRS---VEPLLKLMMIE 201
+ + + L KL+ +E
Sbjct: 92 LALGAFSGLSSLQKLVAVE 110
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 41 TIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
TI + L+ + L ++GN +Q L AF +GL +LQKL ++ +++ + L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 99 TNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKL 152
L E++++ NL+ S +P F ++ L L+L+ N I I + Q + L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC- 211
D+S + + I P AF + L+ + L+ N+L P + L L I LH NPW C C
Sbjct: 183 DLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
Query: 212 NMRSIKMWL 220
+ + WL
Sbjct: 242 RIDYLSRWL 250
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DLS N L + S +F S L+ L+L+R I IE GA+Q + L L ++ + ++ ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
AF+G SL+ +++ N L +FP+ ++ L +L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
T+ LD+S N L+ L +F LQ L L+RC I I+ GA
Sbjct: 30 TKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDGA---------------- 71
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
+QS+ L L L NPI + GAF + L KL E+ L +
Sbjct: 72 --------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 171 KSLESIKLNGNRLSHFPV 188
K+L+ + + N + F +
Sbjct: 124 KTLKELNVAHNLIQSFKL 141
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 114 IPSLTFQSVRF------------LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+P++T+Q + ++L+L+ NP+ + +F P L LD+S ++
Sbjct: 7 VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRS---VEPLLKLMMIE 201
I A+ L ++ L GN + + + + L KL+ +E
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 33/199 (16%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
QVLD+S +Q + A++ L +L L L I + GA GL++L ++ + L
Sbjct: 57 QVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIE-KGAFQFVPGLVKLDMSESRLE---------- 160
S+ + ++ L++LN+A N I + F + L LD+S ++++
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
Query: 161 ------------------HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIEL 202
I P AF + L+ + L+ N+L P + L L I L
Sbjct: 175 HQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWL 233
Query: 203 HDNPWVCDC-NMRSIKMWL 220
H NPW C C + + WL
Sbjct: 234 HTNPWDCSCPRIDYLSRWL 252
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DLS N L + S +F S L+ L+L+R I IE GA+Q + L L ++ + ++ ++
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
AF+G SL+ +++ N L +FP+ ++ L +L
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKEL 131
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
T+ LD+S N L+ L +F LQ L L+RC I I+ GA
Sbjct: 32 TKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDGA---------------- 73
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
+QS+ L L L NPI + GAF + L KL E+ L +
Sbjct: 74 --------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHL 125
Query: 171 KSLESIKLNGNRLSHFPV 188
K+L+ + + N + F +
Sbjct: 126 KTLKELNVAHNLIQSFKL 143
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 114 IPSLTFQSVRF------------LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+P++T+Q + ++L+L+ NP+ + +F P L LD+S ++
Sbjct: 9 VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 68
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSV 191
I A+ L ++ L GN P++S+
Sbjct: 69 IEDGAYQSLSHLSTLILTGN-----PIQSL 93
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
L+L N I+K+E G F + L L+++ ++L + F L + L+ N+L P
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 188 VRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWLADKKNV 226
+ + L L I L +NPW C+C ++ +K W+ ++
Sbjct: 105 MGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASI 144
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C + C+++ L ++P + TQVL + N + L F L
Sbjct: 13 CPSQCSCSGTT----VNCQERSLASVPAGIPTT-TQVLHLYINQITKLEPGVFD--SLTQ 65
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
L L LA + + G D LT L + L N L SIP F +++ L + L NP
Sbjct: 66 LTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 14/82 (17%)
Query: 276 CRVD----SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS 331
CR+D +P +SWY NGR + ++ ++ V E+G + SL+ + SD+
Sbjct: 23 CRMDFKVSGLPAPDVSWYLNGRTVQSD----DLHKMIVSEKGLH----SLIFEVVRASDA 74
Query: 332 GRFYCVAENRAGIADANFTLQV 353
G + CVA+NRAG +A FT+Q+
Sbjct: 75 GAYACVAKNRAG--EATFTVQL 94
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 83/289 (28%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C G + + C K L ++P S T+ L++ N LQ LP F + L
Sbjct: 1 CPSRCSC---SGTE-IRCNSKGLTSVPTGIPSSATR-LELESNKLQSLPHGVFDK--LTQ 53
Query: 77 LQKLFLA------RCHIGQIDSGA-----LD--------------GLTNLIEIDLSDNLL 111
L KL L+ + Q D G LD GL L +D + L
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
Query: 112 TSIPSLT-FQSVRFLRDLNLAR-----------NPISKIE-----KGAFQ--FVP----- 147
+ + F S+R L L+++ N +S +E +FQ F+P
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 148 --GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGN---RLSHFPVRSVEPLL------- 195
L LD+S+ +LE +SP AF SL+ + ++ N L FP + + L
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 196 ---------------KLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQ 229
L + L N + C C +S W+ D++ + V+
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 282
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 91 DSGALDGL--TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
D GL +++ +DLS + S+ S F++++ L+ LNLA N I+KI AF +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L L++S + L + F G + I L N ++ ++ + L KL ++L DN
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 54 LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTS 113
LD+S + L F L +L+ L LA I +I A GL NL ++LS NLL
Sbjct: 271 LDLSHGFVFSLNSRVFET--LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 114 IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE--HISPEAFTGAK 171
+ S F + + ++L +N I+ I+ F+F+ L LD+ ++ L H P
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP------- 381
Query: 172 SLESIKLNGNRLSHFP 187
S+ I L+GN+L P
Sbjct: 382 SIPDIFLSGNKLVTLP 397
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 35/152 (23%)
Query: 94 ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLD 153
+GL++L + L+ N L S+P F + LR L+L N ++ + L LD
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN--DLPANLEILD 532
Query: 154 MSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM 213
+S ++L +P+ F L ++++ N ++C+C +
Sbjct: 533 ISRNQLLAPNPDVFVS---------------------------LSVLDITHNKFICECEL 565
Query: 214 RSIKMWLADKKNV-----PVQPACTGPERLSG 240
+ WL + NV P C P+ SG
Sbjct: 566 STFINWL-NHTNVTIAGPPADIYCVYPDSFSG 596
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 138 IEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL 178
I+K AF+ +P L LD+ S++ + P+AF G L ++L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
C ICK G L +IP +E + LD+S N + + +R +N
Sbjct: 30 CDRNGICKGSSGS---------LNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRC--VN 77
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
LQ L L I I+ + L +L +DLS N L+++ S F+ + L LNL NP
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 137 KIEKGAFQFVPGLVKLDM----SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
+ G L KL + + I + F G LE ++++ + L + +S++
Sbjct: 138 TL--GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195
Query: 193 PLLKLMMIELH 203
+ + + LH
Sbjct: 196 SIQNVSHLILH 206
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
L SIPS ++V+ L+L+ N I+ I Q L L ++ + + I ++F+
Sbjct: 43 LNSIPSGLTEAVK---SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
SLE + L+ N LS+ +PL L + L NP+
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC 211
L ++ + N+L P + L L I LH NPW C C
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 178 LNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK-KNVPVQP-ACTGP 235
L GN L+ P + + L +L L NPW CDC++ +++WL D+ + P + C P
Sbjct: 37 LTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYRDLRCVAP 96
Query: 236 ERLSGKVFSDLHADDF--ACKP 255
L G++ L D+ AC P
Sbjct: 97 PALRGRLLPYLAEDELRAACAP 118
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 35 RDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA 94
R + +IP + + + LD+S N + + R NLQ L L I I+ A
Sbjct: 13 RSRSFTSIPSGLTAAM-KSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINTIEGDA 69
Query: 95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
L +L +DLSDN L+S+ S F + L+ LNL NP + G P L L
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL--GVTSLFPNLTNLQT 127
Query: 155 ----SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
+ I F G SL +++ L ++ +S++ + + + LH
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 111 LTSIPS-LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
TSIPS LT ++ L+L+ N I+ I G + L L + SR+ I +AF
Sbjct: 17 FTSIPSGLTAA----MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
SLE + L+ N LS PL L + L NP+
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 76 NLQKLFLARCHIGQIDSGA--LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
+LQ L L++ H+ + L L NL +D+S N +P + Q +R LNL+
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSST 420
Query: 134 PISKIEKGAFQ-----------------FVPGLVKLDMSESRLEHISPEAFTGAKSLESI 176
I ++ Q F+P L +L +S ++L+ + P+A + L +
Sbjct: 421 GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL-PDA-SLFPVLLVM 478
Query: 177 KLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
K++ N+L P + L L I LH NPW C C + + WL
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 523
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 35 RDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA 94
R + +IP + + + LD+S N + + R NLQ L L I I+ A
Sbjct: 39 RSRSFTSIPSGLTAAM-KSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINTIEGDA 95
Query: 95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
L +L +DLSDN L+S+ S F + L+ LNL NP + G P L L
Sbjct: 96 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL--GVTSLFPNLTNLQT 153
Query: 155 ----SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
+ I F G SL +++ L ++ +S++ + + + LH
Sbjct: 154 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 206
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 111 LTSIPS-LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
TSIPS LT ++ L+L+ N I+ I G + L L + SR+ I +AF
Sbjct: 43 FTSIPSGLTAA----MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 98
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
SLE + L+ N LS PL L + L NP+
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 76 NLQKLFLARCHIGQIDSGA--LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
+LQ L L++ H+ + L L NL +D+S N +P + Q +R LNL+
Sbjct: 388 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSST 446
Query: 134 PISKIEKGAFQ-----------------FVPGLVKLDMSESRLEHISPEAFTGAKSLESI 176
I ++ Q F+P L +L +S ++L+ + P+A + L +
Sbjct: 447 GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL-PDA-SLFPVLLVM 504
Query: 177 KLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
K+ N+L P + L L I LH NPW C C + + WL
Sbjct: 505 KIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 549
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
C ICK G L +IP +E + LD+S N + + +R +N
Sbjct: 4 CDRNGICKGSSGS---------LNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRC--VN 51
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
LQ L L I I+ + L +L +DLS N L+++ S F+ + L LNL NP
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 137 KIEKGAFQFVPGLVKLDM----SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
+ G L KL + + I + F G LE ++++ + L + +S++
Sbjct: 112 TL--GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 169
Query: 193 PLLKLMMIELH 203
+ + + LH
Sbjct: 170 SIQNVSHLILH 180
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
L SIPS ++V+ L+L+ N I+ I Q L L ++ + + I ++F+
Sbjct: 17 LNSIPSGLTEAVK---SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 73
Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
SLE + L+ N LS+ +PL L + L NP+
Sbjct: 74 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 76 NLQKLFLARCHIGQIDSG--ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
+LQ L L + H+ ++ L L NL ID+S N S+P T Q ++ LNL+
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPE-TCQWPEKMKYLNLSST 420
Query: 134 PISKIE-----------------KGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESI 176
I + +P L +L +S ++L + P+A + L +
Sbjct: 421 RIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTL-PDA-SLLPMLLVL 478
Query: 177 KLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
K++ N+L P + L L I LH NPW C C + + WL
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 523
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
+ +PE RMD + + ++ C P +ISW NGR F RI I
Sbjct: 121 YWTRPE-RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR------EFRGEHRIGGI 173
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGG 366
+ ++ SLV+ + SD G + CV EN+ G +TL V R P L G
Sbjct: 174 KL--RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 227
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 81 FLARCHIGQIDSGALDGLTNLIE--------IDLSDNLLTSIPSLTFQSVRFLRDLNLAR 132
F +CH+ + L GL + + +DL +N +T I F++++ L L L
Sbjct: 27 FRCQCHLRVVQCSDL-GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 133 NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
N ISKI GAF + L +L +S+++L+ + PE K+L+ ++++ N ++
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFN 142
Query: 193 PLLKLMMIELHDNPW 207
L +++++EL NP
Sbjct: 143 GLNQMIVVELGTNPL 157
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
I++GA G+ L I ++D +T+IP S L +L+L N I+K++ + + + L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNL 218
Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
KL +S + + + + L + LN N+L P
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 81 FLARCHIGQIDSGALDGLTNLIE--------IDLSDNLLTSIPSLTFQSVRFLRDLNLAR 132
F +CH+ + L GL + + +DL +N +T I F++++ L L L
Sbjct: 27 FRCQCHLRVVQCSDL-GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 133 NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
N ISKI GAF + L +L +S+++L+ + PE K+L+ ++++ N ++
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFN 142
Query: 193 PLLKLMMIELHDNPW 207
L +++++EL NP
Sbjct: 143 GLNQMIVVELGTNPL 157
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
I++GA G+ L I ++D +T+IP S L +L+L N I+K++ + + + L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNL 218
Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
KL +S + + + + L + LN N+L P
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
+ +PE RMD + + ++ C P +ISW NGR F RI I
Sbjct: 13 YWTRPE-RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR------EFRGEHRIGGI 65
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGG 366
+ ++ SLV+ + SD G + CV EN+ G +TL V R P L G
Sbjct: 66 KL--RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 119
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 266 AVSSENATVVCRVDSIPPAAISWY----WNG-RLLLNNTAFSSYQRIFVIEQGEYERKSS 320
AV + C+V S I W NG ++ + T + + + ++ E E + +
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR-- 183
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
L L N E D G + C A N G+A+ F L V
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 2/132 (1%)
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
I LD L L + LT IP+ +R L L L N I ++ F + L
Sbjct: 114 ITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENL 172
Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
++ ++L + F L+ + L N+L P + L L I LH NPW C
Sbjct: 173 ESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 232
Query: 210 DC-NMRSIKMWL 220
C + + WL
Sbjct: 233 SCPRIDYLSRWL 244
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
NL L L R +I ++ S D L NL I+ N L +P F + L+ LNLA N +
Sbjct: 148 NLSHLEL-RANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQL 206
Query: 136 SKIEKGAFQFVPGLVKL-------DMSESRLEHISPEAFTGAKSLE-SIKLNGNRLSHFP 187
+ G F + L K+ D S R++++S ++ + S K +G S P
Sbjct: 207 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG---SGKP 263
Query: 188 VRSV 191
VRS+
Sbjct: 264 VRSI 267
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 255 PEIRMDSRYVEAVSS--ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P ++ V A ++ ++ T+VC D P +SW +G + N + IF
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE-DDEKHIF---- 249
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ S L + N ++D + C+AEN+AG DA+ L+V
Sbjct: 250 --SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 178 LNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK-KNVPVQP-ACTGP 235
L GN L+ P ++ L L L NPW CDC + ++ WLA + + P + C P
Sbjct: 38 LTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAP 97
Query: 236 ERLSGKVFSDLHADDF--ACKP 255
L G++ L D+ AC P
Sbjct: 98 PALRGRLLPYLAEDELRAACAP 119
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 128 LNLARNPISKIEKGAFQFVPGLVK-LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF 186
LNL+ N ++ F+ +P VK LD+ +R+ I P+ T ++L+ + + N+L
Sbjct: 433 LNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSV 488
Query: 187 PVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWLADKKNV 226
P + L L I LHDNPW C C +R + W+ V
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 104 IDLSDNLLTSI--PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+ LS N ++ + P ++F S LR L L+ N I ++ F F L LD+S +RL++
Sbjct: 57 LSLSQNSISELRMPDISFLSE--LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 162 IS--PEAFTGAKSLESIKLNGNRLSHFPV 188
IS P A SL + L+ N PV
Sbjct: 115 ISCCPMA-----SLRHLDLSFNDFDVLPV 138
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 33/219 (15%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
+ LD+S N + + GL L+ L ++ Q+ + L NLI +D+S
Sbjct: 400 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ F + L L +A N + F + L LD+S+ +LE +SP AF
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 170 AKSLESIKLNGNR---LSHFPVRSVEPLL----------------------KLMMIELHD 204
SL+ + ++ N L FP + + L L + L
Sbjct: 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Query: 205 NPWVCDCNMRSIKMWLADKKNVPVQP---ACTGPERLSG 240
N + C C +S W+ D++ + V+ C P G
Sbjct: 577 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 615
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DLS N L + S +F S L+ L+L+R I IE GA+Q + L L ++ + ++ ++
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
AF+G SL+ +++ N L +FP+ ++ L +L
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
T+ LD+S N L+ L +F LQ L L+RC I I+ GA
Sbjct: 54 TKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDGA---------------- 95
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
+QS+ L L L NPI + GAF + L KL E+ L +
Sbjct: 96 --------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147
Query: 171 KSLESIKLNGNRLSHFPV 188
K+L+ + + N + F +
Sbjct: 148 KTLKELNVAHNLIQSFKL 165
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
QVLD+S +Q + A++ L +L L L I + GA GL++L ++ + L
Sbjct: 79 QVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEK-GAFQFVPGLVKLDMSESRLEHI 162
S+ + ++ L++LN+A N I + F + L LD+S ++++ I
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
++L+L+ NP+ + +F P L LD+S ++ I A+ L ++ L GN
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---- 110
Query: 186 FPVRSV 191
P++S+
Sbjct: 111 -PIQSL 115
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 255 PEIRMDSRYVEAVS--SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P I M + A + E T CR P AISW+ NG+L+ N + I +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--------ILK 54
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
G + L + N SD G + C A N+AG + LQV
Sbjct: 55 GS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL +L L + I G L LTNL ++DL++N ++++ L+ + L +L L N
Sbjct: 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 275
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
IS I A + L L+++E++LE ISP + K+L + L N +S PV S+
Sbjct: 276 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 331
Query: 193 PLLKLMM 199
L +L
Sbjct: 332 KLQRLFF 338
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL +L L + I G L LTNL ++DL++N ++++ L+ + L +L L N
Sbjct: 219 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 274
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
IS I A + L L+++E++LE ISP + K+L + L N +S PV S+
Sbjct: 275 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 330
Query: 193 PLLKLMM 199
L +L
Sbjct: 331 KLQRLFF 337
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 33/219 (15%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
+ LD+S N + + GL L+ L ++ Q+ + L NLI +D+S
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ F + L L +A N + F + L LD+S+ +LE +SP AF
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 170 AKSLESIKLNGNR---LSHFPVRSVEPLL----------------------KLMMIELHD 204
SL+ + ++ N L FP + + L L + L
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 205 NPWVCDCNMRSIKMWLADKKNVPVQP---ACTGPERLSG 240
N + C C +S W+ D++ + V+ C P G
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 591
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DLS N L + S +F S L+ L+L+R I IE GA+Q + L L ++ + ++ ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
AF+G SL+ +++ N L +FP+ ++ L +L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
T+ LD+S N L+ L +F LQ L L+RC I I+ GA
Sbjct: 30 TKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDGA---------------- 71
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
+QS+ L L L NPI + GAF + L KL E+ L +
Sbjct: 72 --------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 171 KSLESIKLNGNRLSHFPV 188
K+L+ + + N + F +
Sbjct: 124 KTLKELNVAHNLIQSFKL 141
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
QVLD+S +Q + A++ L +L L L I + GA GL++L ++ + L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEK-GAFQFVPGLVKLDMSESRLEHI 162
S+ + ++ L++LN+A N I + F + L LD+S ++++ I
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
++L+L+ NP+ + +F P L LD+S ++ I A+ L ++ L GN
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---- 86
Query: 186 FPVRSV 191
P++S+
Sbjct: 87 -PIQSL 91
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL +L L + I G L LTNL ++DL++N ++++ L+ + L +L L N
Sbjct: 215 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 270
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
IS I A + L L+++E++LE ISP + K+L + L N +S PV S+
Sbjct: 271 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 193 PLLKLMM 199
L +L
Sbjct: 327 KLQRLFF 333
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL +L L + I G L LTNL ++DL++N ++++ L+ + L +L L N
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 271
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
IS I A + L L+++E++LE ISP + K+L + L N +S PV S+
Sbjct: 272 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 193 PLLKLMM 199
L +L
Sbjct: 328 KLQRLFF 334
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL +L L + I G L LTNL ++DL++N ++++ L+ + L +L L N
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 271
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
IS I A + L L+++E++LE ISP + K+L + L N +S PV S+
Sbjct: 272 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 193 PLLKLMM 199
L +L
Sbjct: 328 KLQRLFF 334
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL +L L + I G L LTNL ++DL++N ++++ L+ + L +L L N
Sbjct: 215 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 270
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
IS I A + L L+++E++LE ISP + K+L + L N +S PV S+
Sbjct: 271 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 193 PLLKLMM 199
L +L
Sbjct: 327 KLQRLFF 333
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL +L L + I G L LTNL ++DL++N ++++ L+ + L +L L N
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 271
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
IS I A + L L+++E++LE ISP + K+L + L N +S PV S+
Sbjct: 272 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 193 PLLKLMM 199
L +L
Sbjct: 328 KLQRLFF 334
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Query: 255 PEIRMDSRYVEAVS--SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P +R + A + S++ T+ C D P ++W +G IEQ
Sbjct: 12 PSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGE---------------PIEQ 56
Query: 313 GEYERK-------SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ E K S L++ +SD + C+AEN+AG DA L+V
Sbjct: 57 EDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 255 PEIRMDSRYVEAVSS--ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P I M + A + E T CR P AISW+ NG+L+ N + I +
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--------ILK 148
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
G + L + N SD G + C A N+AG + LQV
Sbjct: 149 GS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 270 ENATVVCRVDSIPPAAISWYWN 291
E+A VVCRV S P A+SW ++
Sbjct: 18 EDAEVVCRVSSSPAPAVSWLYH 39
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 54 LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL------TNLIEIDLS 107
LD+S N L+ F+ G KLF + Q++ + L T++ + L+
Sbjct: 176 LDLSSNPLKEFSPGCFQTIG-----KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 108 DNLLTSIPSLTFQSVRF--LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPE 165
+N L + TF +++ L L+L+ N + + G+F ++P L L + + ++ +SP
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 166 AFTGAKSLESIKL 178
+F G +L + L
Sbjct: 291 SFYGLSNLRYLSL 303
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
L +VL++ N L + + F NL +L L I +I S NLI++DLS N
Sbjct: 74 LLKVLNLQHNELSQISDQTFVFCT--NLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV--PGLVKLDMSESRLEHISPEAF 167
L+S T + L++L LA+N I + +F+ L KLD+S + L+ SP F
Sbjct: 132 GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCF 191
Query: 168 TGAKSLESIKLNGNRLS 184
L ++ LN +L+
Sbjct: 192 QTIGKLFALLLNNAQLN 208
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 33 ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRR--------AGLLNLQKLFLAR 84
+C L IP+ S +T VL+++ N L+ LP F R AG ++ KL
Sbjct: 10 DCSHLKLTHIPDDLPSNIT-VLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 85 CHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ 144
C I L L ++L N L+ I TF L +L+L N I KI+ F+
Sbjct: 69 CQI----------LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFK 118
Query: 145 FVPGLVKLDMSESRL 159
L+KLD+S + L
Sbjct: 119 NQKNLIKLDLSHNGL 133
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 105/281 (37%), Gaps = 60/281 (21%)
Query: 27 GGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILP---KEAFRRAGL--------- 74
G++W R+ F I + + L +S ++ ++P + RR L
Sbjct: 422 SGQEWRGLRNIFEIYL------SYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSP 475
Query: 75 ----LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSI--------PSLTFQSV 122
NL L L+ +I I+ L+GL NL +D N L + P + +
Sbjct: 476 FRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGL 535
Query: 123 RFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR 182
L LNL N + +I G F+ + L +++ + L + P F SL S+ L N
Sbjct: 536 SHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNL 595
Query: 183 LSHFPVRSVE------PLLKLMMIELHDNPWVCDCNMRSIKMWLADKKN--------VPV 228
+ SVE P L +++ NP+ C C S W + N +
Sbjct: 596 -----ITSVEKDVFGPPFQNLNSLDMRFNPFDCTCESIS---WFVNWINQTHTNISELST 647
Query: 229 QPACTGPERLSG---KVFSDLHADDFACKPEIRMDSRYVEA 266
C P G K+F D +CK ++ Y +
Sbjct: 648 HYLCNTPHHYYGFPLKLF-----DTSSCKDSAPFENLYFQG 683
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 54 LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN-LLT 112
L + +LQ L E F L L L + HI +I +G L L +DL N +
Sbjct: 360 LSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQ 419
Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH--ISPEAFTGA 170
+ ++ +R + ++ L+ N ++ +F VP L +L + L++ ISP F
Sbjct: 420 KLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPL 479
Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
++L + L+ N +++ +E L L +++ N
Sbjct: 480 RNLTILDLSNNNIANINEDLLEGLENLEILDFQHN 514
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 43/189 (22%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ---------IDSGALDGLTNLI 102
+ L + NN+Q L +F GL NL+ L L R Q ID + L L
Sbjct: 275 RYLSLEYNNIQRLSPRSF--YGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLE 332
Query: 103 EIDLSDNLLTSIPSLTFQ---SVRFLR-------------------------DLNLARNP 134
+++ DN + S S TF S+++L LNL +N
Sbjct: 333 YLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNH 392
Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEH-ISPEAFTGAKSLESIKLNGNRLSHFPVRS--- 190
ISKI G F ++ L LD+ + +E +S + + G +++ I L+ N+ S
Sbjct: 393 ISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFAL 452
Query: 191 VEPLLKLMM 199
V L +LM+
Sbjct: 453 VPSLQRLML 461
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 9/136 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q L ++ N L + F NL +L L+ ++ + +G+ L +L + L N +
Sbjct: 225 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISK---------IEKGAFQFVPGLVKLDMSESRLEHI 162
+ +F + LR L+L R + I+ +FQ++ L L+M ++ +
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST 344
Query: 163 SPEAFTGAKSLESIKL 178
FTG SL+ + L
Sbjct: 345 KSNTFTGLVSLKYLSL 360
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
+ LTQ LD+S NNL + +F + L +L+ L L +I ++ + GL+NL + L
Sbjct: 248 TNLTQ-LDLSYNNLHDVGNGSF--SYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK 304
Query: 108 DNL------LTSIPSL---TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE-- 156
L S P++ +FQ +++L LN+ N I + F + L L +S+
Sbjct: 305 RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTF 364
Query: 157 SRLEHISPEAFTGAKS--LESIKLNGNRLSHFPVRSVEPLLKLMMIEL 202
+ L+ ++ E F L ++ L N +S + L +L +++L
Sbjct: 365 TSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDL 412
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
+VEA E T+ C+VD P I+WY L + A+ + V +SL
Sbjct: 13 EHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV---------ASL 63
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
V+ SD G + C AEN G ++ L + R
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER 98
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
CR++ P +SWY +G LL ++ ++ Q F+ ++L + +S G++
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDD---ANLQTSFI------HNVATLQILQTDQSHVGQYN 173
Query: 336 CVAENRAGIADANFTLQVTYRGV 358
C A N G A ++ L ++ V
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEV 196
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P R VE + + + C + PP +SW+ + R L + + F+
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL----- 439
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAG 343
+S+ + N +D G + C A N G
Sbjct: 440 ----TSIHILNVDSADIGEYQCKASNDVG 464
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
V+ E+ T C V P I+W + R + +Y+ V E ++L +
Sbjct: 207 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---GNYKMTLV------ENTATLTV 257
Query: 324 TNAQESDSGRFYCVAENRAG 343
+ D+G++ C A N AG
Sbjct: 258 LKVTKGDAGQYTCYASNVAG 277
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 255 PEIRMDSRYVEAVSS--ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P I M + A + E T CR P AISW+ NG+L+ N + I +
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--------ILK 244
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
G + L + N SD G + C A N+AG + LQV
Sbjct: 245 GS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 270 ENATVVCRVDSIPPAAISWYWN 291
E+A VVCRV S P A+SW ++
Sbjct: 114 EDAEVVCRVSSSPAPAVSWLYH 135
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 53 VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL-- 110
+LD+S NNL ++ ++F A L L+ FL +I + S +L GL N+ ++L +
Sbjct: 257 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 111 ----LTSIPSL---TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES--RLEH 161
L S+P + +FQ ++ L LN+ N I I+ F + L L +S S L
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 162 ISPEAFTGAKS--LESIKLNGNRLS 184
++ E F L + L N++S
Sbjct: 375 LTNETFVSLAHSPLHILNLTKNKIS 399
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 49 ELTQVLDMSGNNLQILPKEA------FRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLI 102
E ++LD+ NNL L K A + GL +L L L +I L L
Sbjct: 509 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 568
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-FVPGLVKLDM 154
IDL N L ++P+ F + L+ LNL +N I+ +EK F L +LDM
Sbjct: 569 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 621
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 61 LQILPK-EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLT- 118
L LPK + F L L+ L + I I S GL NL + LS N TS+ +LT
Sbjct: 319 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTN 377
Query: 119 --FQSVRF--LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL-EHISPEAFTGAKSL 173
F S+ L LNL +N ISKIE AF ++ L LD+ + + + ++ + + G +++
Sbjct: 378 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 437
Query: 174 ESIKLNGNR 182
I L+ N+
Sbjct: 438 FEIYLSYNK 446
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
TN+ ++L+ N L +P+ F L L++ N ISK+E Q +P L L++ +
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 159 LEHISPEAFTGAKSLESIKLNGNRL 183
L +S + F +L + L N +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSI 114
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 33 ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
+C L +P+ + +T VL+++ N L+ LP F R
Sbjct: 15 DCSHLKLTQVPDDLPTNIT-VLNLTHNQLRRLPAANFTRY-------------------- 53
Query: 93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
+ L +D+ N ++ + Q + L+ LNL N +S++ F F L +L
Sbjct: 54 ------SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 107
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLS 184
+ + ++ I F K+L ++ L+ N LS
Sbjct: 108 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 30 QWMECRDKFLIT---IPEAPESELTQVLDM-------SGNNLQILPKEAFRRAGLLNLQK 79
QW++C + + IP + T ++++ S +L+ L E F L
Sbjct: 331 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 390
Query: 80 LFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR---DLNLARNPIS 136
L L + I +I+S A L +L +DL N + LT Q R L ++ L+ N
Sbjct: 391 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ--ELTGQEWRGLENIFEIYLSYNKYL 448
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHI--SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
++ + +F VP L +L + L+++ SP F ++L + L+ N +++ +E L
Sbjct: 449 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 508
Query: 195 LKLMMIELHDN 205
KL +++L N
Sbjct: 509 EKLEILDLQHN 519
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
+ +VL++ N L L + F A NL +L L I +I + NLI +DLS N
Sbjct: 79 MLKVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP--GLVKLDMSESRLEHISPEAF 167
L+S T + L++L L+ N I ++ L KL++S ++++ SP F
Sbjct: 137 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 196
Query: 168 TGAKSLESIKLNGNRL 183
L + LN +L
Sbjct: 197 HAIGRLFGLFLNNVQL 212
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 53 VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL-- 110
+LD+S NNL ++ ++F A L L+ FL +I + S +L GL N+ ++L +
Sbjct: 262 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 111 ----LTSIPSL---TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES--RLEH 161
L S+P + +FQ ++ L LN+ N I I+ F + L L +S S L
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 162 ISPEAFTGAKS--LESIKLNGNRLS 184
++ E F L + L N++S
Sbjct: 380 LTNETFVSLAHSPLHILNLTKNKIS 404
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 49 ELTQVLDMSGNNLQILPKEA------FRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLI 102
E ++LD+ NNL L K A + GL +L L L +I L L
Sbjct: 514 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 573
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-FVPGLVKLDM 154
IDL N L ++P+ F + L+ LNL +N I+ +EK F L +LDM
Sbjct: 574 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 626
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 61 LQILPK-EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLT- 118
L LPK + F L L+ L + I I S GL NL + LS N TS+ +LT
Sbjct: 324 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTN 382
Query: 119 --FQSVRF--LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL-EHISPEAFTGAKSL 173
F S+ L LNL +N ISKIE AF ++ L LD+ + + + ++ + + G +++
Sbjct: 383 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 442
Query: 174 ESIKLNGNR 182
I L+ N+
Sbjct: 443 FEIYLSYNK 451
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
TN+ ++L+ N L +P+ F L L++ N ISK+E Q +P L L++ +
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 159 LEHISPEAFTGAKSLESIKLNGNRL 183
L +S + F +L + L N +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSI 119
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 33 ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
+C L +P+ + +T VL+++ N L+ LP F R
Sbjct: 20 DCSHLKLTQVPDDLPTNIT-VLNLTHNQLRRLPAANFTRY-------------------- 58
Query: 93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
+ L +D+ N ++ + Q + L+ LNL N +S++ F F L +L
Sbjct: 59 ------SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 112
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLS 184
+ + ++ I F K+L ++ L+ N LS
Sbjct: 113 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 30 QWMECRDKFLIT---IPEAPESELTQVLDM-------SGNNLQILPKEAFRRAGLLNLQK 79
QW++C + + IP + T ++++ S +L+ L E F L
Sbjct: 336 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 395
Query: 80 LFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR---DLNLARNPIS 136
L L + I +I+S A L +L +DL N + LT Q R L ++ L+ N
Sbjct: 396 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ--ELTGQEWRGLENIFEIYLSYNKYL 453
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHI--SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
++ + +F VP L +L + L+++ SP F ++L + L+ N +++ +E L
Sbjct: 454 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 513
Query: 195 LKLMMIELHDN 205
KL +++L N
Sbjct: 514 EKLEILDLQHN 524
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
+ +VL++ N L L + F A NL +L L I +I + NLI +DLS N
Sbjct: 84 MLKVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP--GLVKLDMSESRLEHISPEAF 167
L+S T + L++L L+ N I ++ L KL++S ++++ SP F
Sbjct: 142 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 201
Query: 168 TGAKSLESIKLNGNRL 183
L + LN +L
Sbjct: 202 HAIGRLFGLFLNNVQL 217
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 53 VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL-- 110
+LD+S NNL ++ ++F A L L+ FL +I + S +L GL N+ ++L +
Sbjct: 252 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 111 ----LTSIPSL---TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES--RLEH 161
L S+P + +FQ ++ L LN+ N I I+ F + L L +S S L
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 162 ISPEAFTGAKS--LESIKLNGNRLS 184
++ E F L + L N++S
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKIS 394
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 49 ELTQVLDMSGNNLQILPKEA------FRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLI 102
E ++LD+ NNL L K A + GL +L L L +I L L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-FVPGLVKLDM 154
IDL N L ++P+ F + L+ LNL +N I+ +EK F L +LDM
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 61 LQILPK-EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLT- 118
L LPK + F L L+ L + I I S GL NL + LS N TS+ +LT
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTN 372
Query: 119 --FQSVRF--LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL-EHISPEAFTGAKSL 173
F S+ L LNL +N ISKIE AF ++ L LD+ + + + ++ + + G +++
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432
Query: 174 ESIKLNGNR 182
I L+ N+
Sbjct: 433 FEIYLSYNK 441
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
TN+ ++L+ N L +P+ F L L++ N ISK+E Q +P L L++ +
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 159 LEHISPEAFTGAKSLESIKLNGNRL 183
L +S + F +L + L N +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 33 ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
+C L +P+ + +T VL+++ N L+ LP F R
Sbjct: 10 DCSHLKLTQVPDDLPTNIT-VLNLTHNQLRRLPAANFTRY-------------------- 48
Query: 93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
+ L +D+ N ++ + Q + L+ LNL N +S++ F F L +L
Sbjct: 49 ------SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLS 184
+ + ++ I F K+L ++ L+ N LS
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 30 QWMECRDKFLIT---IPEAPESELTQVLDM-------SGNNLQILPKEAFRRAGLLNLQK 79
QW++C + + IP + T ++++ S +L+ L E F L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385
Query: 80 LFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR---DLNLARNPIS 136
L L + I +I+S A L +L +DL N + LT Q R L ++ L+ N
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ--ELTGQEWRGLENIFEIYLSYNKYL 443
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHI--SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
++ + +F VP L +L + L+++ SP F ++L + L+ N +++ +E L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503
Query: 195 LKLMMIELHDN 205
KL +++L N
Sbjct: 504 EKLEILDLQHN 514
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
+ +VL++ N L L + F A NL +L L I +I + NLI +DLS N
Sbjct: 74 MLKVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP--GLVKLDMSESRLEHISPEAF 167
L+S T + L++L L+ N I ++ L KL++S ++++ SP F
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191
Query: 168 TGAKSLESIKLNGNRL 183
L + LN +L
Sbjct: 192 HAIGRLFGLFLNNVQL 207
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 23 CKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLF 81
C K G + C + L IP+ P + T+VL+ S N L + F R L+NL L
Sbjct: 7 CTEKEGNRTYNCENLGLREIPDTLPNT--TEVLEFSFNFLPTIQNTTFSR--LINLIFLD 62
Query: 82 LARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG 141
L RC I + L I L+ N L + + +FL+ L L + IS +E
Sbjct: 63 LTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFI 122
Query: 142 AFQFVPGLVKLDMSESRLEHIS-PEAF 167
+ L L + + + I+ PE F
Sbjct: 123 PVHNLENLESLHLGSNHISSINLPENF 149
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 13/210 (6%)
Query: 44 EAPESELTQVLDMSGNNLQI-LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLI 102
E P+ EL LD++ +L + P F+ LL + L L+ C + + L GL +L
Sbjct: 397 ECPQLEL---LDVAFTHLHVKAPHSPFQNLHLLRV--LNLSHCLLDTSNQHLLAGLQDLR 451
Query: 103 EIDLSDNLLT--SIPSLTF-QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
++L N SI Q V L L L+ + I++ AF + + LD+S + L
Sbjct: 452 HLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
Query: 160 EHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMW 219
S +A + K L + + N + P + L + +I L NP C C+ W
Sbjct: 512 TGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITW 570
Query: 220 LAD---KKNVPVQPACTGPERLSGKVFSDL 246
+ K + C P L G SD+
Sbjct: 571 YKENLHKLEDSEETTCANPPSLRGVKLSDV 600
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 89 QIDSG--ALDGLTNLIEIDLS--DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ 144
++D G L+ L NL ++DLS D + +L +++R L+ LNL+ N +E AF+
Sbjct: 337 KLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFK 396
Query: 145 FVPGLVKLDMSESRLEHISPEA 166
P L LD++ + L +P +
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHS 418
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+DL +N ++ + F+ ++ L L L N ISKI + AF + L KL +S++ L I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
P SL ++++ NR+ P L + IE+ NP
Sbjct: 119 PNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 26/187 (13%)
Query: 30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI-- 87
Q + L+ IP S L + L + N ++ +PK F +GL N+ + + +
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVE-LRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLEN 161
Query: 88 GQIDSGALDGLT--------------------NLIEIDLSDNLLTSIPSLTFQSVRFLRD 127
+ GA DGL L E+ L N + +I L
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221
Query: 128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
L L N I IE G+ F+P L +L + ++L + P K L+ + L+ N ++
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVG 280
Query: 188 VRSVEPL 194
V P+
Sbjct: 281 VNDFCPV 287
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 231 ACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW 290
CT + G V S A KP+I V+ + A + C P ++SW
Sbjct: 78 CCTANNGVGGAVES-CGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW-- 134
Query: 291 NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
+ ++A RI V+E G SL + N Q+ D+G++ CVA+N G A
Sbjct: 135 ----IKGDSALRENSRIAVLESG------SLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 248 ADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLL-LNNTAFSSYQR 306
A+ P I V+A+ E AT +C V+S P ISW N L+ L +T +S
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS---- 56
Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA-DANFTLQVTYR 356
+ E G+ L + + ++SD G + C A N G A ++ LQV +
Sbjct: 57 --IRENGQL-----LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK 100
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
YER+++L +++A+ +DSG F C A N G A+ TL+V +G
Sbjct: 244 YERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG 286
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
YER+ +L +++A+ DSG F C A N G A+ TL+V +G
Sbjct: 248 YERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
YER+++L +++A+ +DSG F C A N G A+ TL+V +G
Sbjct: 269 YERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG 311
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 58/193 (30%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLAR------CHIG----------------- 88
Q LD++ +L LP GL L+KL L+ C I
Sbjct: 281 QELDLTATHLSELPSGL---VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 89 --QIDSGALDGLTNLIEIDLS-DNLLTS-IPSLTFQSVRFLRDLNLARNPISKIEKGAFQ 144
++ +G L+ L NL E+DLS D++ TS +L +++ L+ LNL+ N ++ AF+
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 145 FVPGLVKLDMSESRLE-----------HI--------------SPEAFTGAKSLESIKLN 179
P L LD++ +RL+ H+ S + F G +L+ + L
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 180 GNRLSHFPVRSVE 192
GN HFP +++
Sbjct: 458 GN---HFPKGNIQ 467
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 82/224 (36%), Gaps = 30/224 (13%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q L++S N L EAF+ L L L R + S L L ++LS +LL
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSHSLL 437
Query: 112 TSIPSLTFQSVRFLRDLNLARN--PISKIEK-GAFQFVPGLVKLDMSESRLEHISPEAFT 168
F + L+ LNL N P I+K + Q + L L +S L I AFT
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497
Query: 169 GAKSLESIKLNGNRLSHFPVRSVEPLLKLMM-----------------------IELHDN 205
K + + L+ NRL+ + ++ L + + I L N
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Query: 206 PWVCDCNMRSIKMWLAD---KKNVPVQPACTGPERLSGKVFSDL 246
P C C+ W + K C P L G SD+
Sbjct: 558 PLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDV 601
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 68/184 (36%), Gaps = 29/184 (15%)
Query: 23 CKWKGGKQWMECRDKFLITIP-EAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLF 81
C K + C + L IP P S T+ L+ S N L + F R L+NL L
Sbjct: 8 CIEKEVNKTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSR--LINLTFLD 63
Query: 82 LARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG 141
L RC I I TFQS L L L NP+ + +
Sbjct: 64 LTRCQIYWIHED------------------------TFQSQHRLDTLVLTANPLIFMAET 99
Query: 142 AFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIE 201
A L L ++ + I K+LES+ L N +S + P KL +++
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159
Query: 202 LHDN 205
+N
Sbjct: 160 FQNN 163
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 34/174 (19%)
Query: 40 ITIPEAPESELTQVLDMSGNNLQILPKE---AFRRAGLLNLQKLFLARCHIGQIDSGALD 96
I +P+ +E +VLD N + L KE + ++A L+L L I I+ GA D
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN---LNGNDIAGIEPGAFD 200
Query: 97 ----------GLTNLIEI--DLSDNLLTSIPSLTFQSV---------------RFLRDLN 129
G NL+ I L ++ + S+ TF+ + + +N
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
Query: 130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRL 183
L ++ I F GL +LD++ + L + P G +L+ + L+ N+
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKF 313
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
C P ISW +G+ + NN + Q +V G+ S L +T+ +D G +
Sbjct: 451 CVAGGNPTPEISWELDGKKIANNDRYQVGQ--YVTVNGDV--VSYLNITSVHANDGGLYK 506
Query: 336 CVAENRAGIADANFTLQVTYRGVGLPFL 363
C+A+++ G+A+ + L V GLP++
Sbjct: 507 CIAKSKVGVAEHSAKLNV----YGLPYI 530
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 255 PEIR-MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P IR M+ + + V+ E V C V P +I W + R L N Q++F
Sbjct: 528 PYIRQMEKKAI--VAGETLIVTCPVAGYPIDSIVWERDNRALPINRK----QKVF----- 576
Query: 314 EYERKSSLVLTNAQE-SDSGRFYCVAENRAGI-ADANFTLQVTYRGVGLPF 362
+L++ N + SD + CVA+N+ G A + +QV +PF
Sbjct: 577 ---PNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPF 624
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
S ++C P WY + + T ++ V+ + +L++ +A
Sbjct: 263 SSTMALLCPAQGYPVPVFRWY---KFIEGTTR----KQAVVLNDRVKQVSGTLIIKDAVV 315
Query: 329 SDSGRFYCVAENRAGIADANFTLQVT 354
DSG++ CV N G L VT
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLTVT 341
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
C+V +P +SW +G+ + ++A ++ V E G + SL++ D+G +
Sbjct: 31 CKVSGLPTPDLSWQLDGKPVRPDSA----HKMLVRENGVH----SLIIEPVTSRDAGIYT 82
Query: 336 CVAENRAGIADANFTLQVTYRGVG 359
C+A NRAG + L V + G
Sbjct: 83 CIATNRAGQNSFSLELVVAAKESG 106
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
IDLS N L + S +F + L+ L+L+R I IE A+ + L L ++ + ++ S
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
P +F+G SLE +++ L FP+ + L KL
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Query: 33 ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
+C D+ L +P+ S T+ +D+S N L+IL +F LQ L L+RC I I+
Sbjct: 17 QCMDQKLSKVPDDIPSS-TKNIDLSFNPLKILKSYSFSNFS--ELQWLDLSRCEIETIED 73
Query: 93 ------------------------GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL 128
G+ GLT+L + + L S+ S + L+ L
Sbjct: 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133
Query: 129 NLARNPISKIEKGA-FQFVPGLVKLDMSESRLEHIS 163
N+A N I + A F + LV +D+S + ++ I+
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 30 QWMECRDKFLITIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI 87
QW++ + TI + L + L ++GN +Q +F +GL +L+ L +
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLENLVAVETKL 116
Query: 88 GQIDSGALDGLTNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIEKGAFQF 145
++S + L L +++++ N + S +P+ F ++ L ++L+ N I I QF
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQF 175
Query: 146 V---PGL-VKLDMSESRLEHISPEAFTGAKSLESIKLNGN 181
+ P + + LDMS + ++ I +AF G K L + L GN
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGN 214
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 27/158 (17%)
Query: 92 SGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVK 151
S TNL +DLS L I F ++ L+ LN++ N + ++ + + L
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC 211
LD S +R+E +K + L HFP L L +N C C
Sbjct: 526 LDCSFNRIE--------TSKGI---------LQHFPK-------SLAFFNLTNNSVACIC 561
Query: 212 NMRSIKMWLADKKNVPV---QPACTGPERLSGKVFSDL 246
+ W+ ++K V Q C P ++ + D
Sbjct: 562 EHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDF 599
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
++++L+ NP+ ++ +F L LD+S +E I +A+ G L ++ L GN
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN---- 90
Query: 186 FPVRSVEP 193
P++S P
Sbjct: 91 -PIQSFSP 97
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 68 AFRRAGLLNLQKLFLARCHIGQIDSGALD----GLTNLIEIDLSDNLLTSIPSLTFQSVR 123
+F++ L +L L L+R + SG G +L +DLS N I S F +
Sbjct: 343 SFKKVALPSLSYLDLSRNALSF--SGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLE 399
Query: 124 FLRDLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR 182
L+ L+ + + ++ E AF + L+ LD+S + + F G SL ++K+ GN
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Query: 183 L 183
Sbjct: 460 F 460
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 54 LDMSGNNLQILPKEAFRRAG-LLNLQKLFLARCHIGQIDSGA--LDGLTNLIEIDLSDNL 110
LD S N +L F G L L+ L L + ++ A + +L ++D+S N
Sbjct: 329 LDFSNN---LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN- 384
Query: 111 LTSIPSLTFQS-------VRFLRDLNLARNPISKIEKGAFQFVPGLVK-LDMSESRLEHI 162
S+++ + L LN++ N ++ F+ +P +K LD+ ++++ I
Sbjct: 385 -----SVSYDEKKGDCSWTKSLLSLNMSSNILTD---TIFRCLPPRIKVLDLHSNKIKSI 436
Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC 211
P+ ++L+ + + N+L P + L L I LH NPW C C
Sbjct: 437 -PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+++S N ++ + + S+ LR L ++ N I ++ F+F L LD+S ++L IS
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPV 188
K L+ L+ N P+
Sbjct: 86 CHPTVNLKHLD---LSFNAFDALPI 107
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
+VLD+ N ++ +PK+ + LQ+L +A + + G D LT+L +I L N
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEA---LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
+E AT+ C+V+ P I W+ +G + N S R+ + + ++ + +E
Sbjct: 24 NEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKS--HRVQFKDGALFFYRT---MQGKKE 78
Query: 329 SDSGRFYCVAENRAGIA 345
D G ++CVA+NR G A
Sbjct: 79 QDGGEYWCVAKNRVGQA 95
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 249 DDFACKPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLL--LNNTAFSSYQ 305
DDF +P+ D+R + E A + C IP + W +G L L +F +
Sbjct: 109 DDFRVEPK---DTRVAKG---ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASS 162
Query: 306 RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT 350
R+ +++ G +L+++N + D G + C+A+N G ++++
Sbjct: 163 RVRIVDGG------NLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
+E AT+ C+V+ P I W+ +G + N S R+ + + ++ + +E
Sbjct: 24 NEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKS--HRVQFKDGALFFYRT---MQGKKE 78
Query: 329 SDSGRFYCVAENRAGIA 345
D G ++CVA+NR G A
Sbjct: 79 QDGGEYWCVAKNRVGQA 95
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 249 DDFACKPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLL--LNNTAFSSYQ 305
DDF +P+ D+R + E A + C IP + W +G L L +F +
Sbjct: 109 DDFRVEPK---DTRVAKG---ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASS 162
Query: 306 RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT 350
R+ +++ G +L+++N + D G + C+A+N G ++++
Sbjct: 163 RVRIVDGG------NLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
IDLS N L + S +F + L+ L+L+R I IE A+ + L L ++ + ++ S
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 164 PEAFTGAKSLE---SIKLNGNRLSHFPVRSVEPLLKL 197
P +F+G SLE +++ L FP+ + L KL
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 128
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Query: 33 ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
+C D+ L +P+ S T+ +D+S N L+IL +F LQ L L+RC I I+
Sbjct: 12 QCMDQKLSKVPDDIPSS-TKNIDLSFNPLKILKSYSFSNFS--ELQWLDLSRCEIETIED 68
Query: 93 ------------------------GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL 128
G+ GLT+L + + L S+ S + L+ L
Sbjct: 69 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 128
Query: 129 NLARNPISKIEKGA-FQFVPGLVKLDMSESRLEHIS 163
N+A N I + A F + LV +D+S + ++ I+
Sbjct: 129 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 164
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 30 QWMECRDKFLITIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI 87
QW++ + TI + L + L ++GN +Q +F +GL +L+ L +
Sbjct: 54 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLENLVAVETKL 111
Query: 88 GQIDSGALDGLTNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIEKGAFQF 145
++S + L L +++++ N + S +P+ F ++ L ++L+ N I I QF
Sbjct: 112 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQF 170
Query: 146 V---PGL-VKLDMSESRLEHISPEAFTGAKSLESIKLNGN 181
+ P + + LDMS + ++ I +AF G K L + L GN
Sbjct: 171 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGN 209
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 27/158 (17%)
Query: 92 SGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVK 151
S TNL +DLS L I F ++ L+ LN++ N + ++ + + L
Sbjct: 461 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 520
Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC 211
LD S +R+E +K + L HFP L L +N C C
Sbjct: 521 LDCSFNRIE--------TSKGI---------LQHFPK-------SLAFFNLTNNSVACIC 556
Query: 212 NMRSIKMWLADKKNVPV---QPACTGPERLSGKVFSDL 246
+ W+ ++K V Q C P ++ + D
Sbjct: 557 EHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDF 594
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
++++L+ NP+ ++ +F L LD+S +E I +A+ G L ++ L GN
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN---- 85
Query: 186 FPVRSVEP 193
P++S P
Sbjct: 86 -PIQSFSP 92
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 68 AFRRAGLLNLQKLFLARCHIGQIDSGALD----GLTNLIEIDLSDNLLTSIPSLTFQSVR 123
+F++ L +L L L+R + SG G +L +DLS N I S F +
Sbjct: 338 SFKKVALPSLSYLDLSRNALSF--SGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLE 394
Query: 124 FLRDLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR 182
L+ L+ + + ++ E AF + L+ LD+S + + F G SL ++K+ GN
Sbjct: 395 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 454
Query: 183 L 183
Sbjct: 455 F 455
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
R + E+A C D P ++W G++L + + +Q + +Y KS+
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL---STSARHQ----VTTTKY--KSTF 72
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+++ Q SD G + V EN G +A FTL +
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
R + E+A C D P ++W G++L + S+ ++ + KS+
Sbjct: 16 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL----STSARHQVTTTKY-----KSTF 66
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+++ Q SD G + V EN G +A FTL +
Sbjct: 67 EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + + AT++C P ISW+ + L +S RI + G
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKD---FLPVDPATSNGRIKQLRSG- 164
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGI---ADANFTLQV 353
+L + +++ESD G++ CVA N AG A AN ++V
Sbjct: 165 -----ALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRV 201
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNT-AFSSYQRIFVIEQGEYERKSSLVL 323
+ + ++ + C++ +IPP + W N ++ NT S YQ + + +L++
Sbjct: 26 KVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ--------DNTGRVTLLI 77
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ + D+G + A N AG+ N L VT R
Sbjct: 78 KDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 29/141 (20%)
Query: 226 VPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA 285
+PV P T PE++ K LHA +++ C P
Sbjct: 9 MPVAPYWTSPEKMEKK----LHA-----------------VPAAKTVKFKCPSSGTPQPT 47
Query: 286 ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
+ W NG+ + Y+ + S+++ + SD G + C+ EN G
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYAT--------WSIIMDSVVPSDKGNYTCIVENEYGSI 99
Query: 346 DANFTLQVTYRGVGLPFLGGG 366
+ + L V R P L G
Sbjct: 100 NHTYQLDVVERSPHRPILQAG 120
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
A P + + R + NAT+VC+V P + WY G+ ++ + Q
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF---- 57
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+G Y + L++ + + D+ + A N+ G +L+V
Sbjct: 58 KGGYHQ---LIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 29/141 (20%)
Query: 226 VPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA 285
+PV P T PE++ K LHA +++ C P
Sbjct: 10 MPVAPYWTSPEKMEKK----LHA-----------------VPAAKTVKFKCPSSGTPQPT 48
Query: 286 ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
+ W NG+ + Y+ + S+++ + SD G + C+ EN G
Sbjct: 49 LRWLKNGKEFKPDHRIGGYKVRYAT--------WSIIMDSVVPSDKGNYTCIVENEYGSI 100
Query: 346 DANFTLQVTYRGVGLPFLGGG 366
+ + L V R P L G
Sbjct: 101 NHTYQLDVVERSPHRPILQAG 121
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 29/141 (20%)
Query: 226 VPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA 285
+PV P T PE++ K LHA +++ C P
Sbjct: 9 MPVAPYWTSPEKMEKK----LHA-----------------VPAAKTVKFKCPSSGTPNPT 47
Query: 286 ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
+ W NG+ + Y+ + S+++ + SD G + C+ EN G
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYAT--------WSIIMDSVVPSDKGNYTCIVENEYGSI 99
Query: 346 DANFTLQVTYRGVGLPFLGGG 366
+ + L V R P L G
Sbjct: 100 NHTYQLDVVERSPHRPILQAG 120
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 274 VVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR 333
+ C V + P A ISW+ +G+LL + S+Y I + S L +T E+D G
Sbjct: 38 ITCEVFAYPSATISWFRDGQLLPS----SNYSNIKIYNT---PSASYLEVTPDSENDFGN 90
Query: 334 FYCVAENRAGIADANFTL 351
+ C A NR G F L
Sbjct: 91 YNCTAVNRIGQESLEFIL 108
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 84 RCHIGQIDSGALDGLTNLIEIDLSDNLL--TSIPSLTFQSVRFLRDLNLARNPISKIEKG 141
+ H+G G L+ L NL +DLS N + + SL +++ L+ LNL+ N ++
Sbjct: 335 KLHLG---VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQ 391
Query: 142 AFQFVPGLVKLDMSESRLEHISPEA 166
AF+ P L LD++ +RL +P++
Sbjct: 392 AFKECPQLELLDLAFTRLHINAPQS 416
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 22 ICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKL 80
+C K + C + L IP+ P + T+ L+ S N L + F R L+NL L
Sbjct: 4 MCIEKEANKTYNCENLGLSEIPDTLPNT--TEFLEFSFNFLPTIHNRTFSR--LMNLTFL 59
Query: 81 FLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK 140
L RC I I L + L+ N L + + + L+ L L + IS +E
Sbjct: 60 DLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLE- 118
Query: 141 GAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
F+P + L+ ES + G+ + SIK + FP R+++ L
Sbjct: 119 ----FIP-VHNLENLES--------LYLGSNHISSIKFPKD----FPARNLKVL 155
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 96 DGLTNLIE-IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
D L N E ++ S N L +I + TF + L L+L R I+ I + FQ L L +
Sbjct: 26 DTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVL 85
Query: 155 SESRLEHISPEAFTGAKSLES---IKLNGNRLSHFPVRSVEPLLKLMM 199
+ + L ++ + G KSL+ I+ + L PV ++E L L +
Sbjct: 86 TGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYL 133
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 276 CRVDSIPPAAISWYWNGRLLLNNTA-FSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF 334
C +P I+WY G L ++ A F ++ + +L +TN E DSG +
Sbjct: 244 CIASGVPTPDIAWYKKGGDLPSDKAKFENFNK-------------ALRITNVSEEDSGEY 290
Query: 335 YCVAENRAGIADANFTLQV 353
+C+A N+ G +++V
Sbjct: 291 FCLASNKMGSIRHTISVRV 309
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
A P + + R + NAT+VC+V P + WY G+ ++ + Q
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF---- 57
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+G Y + L++ + + D+ + A N+ G +L+V
Sbjct: 58 KGGYHQ---LIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + + AT++C P I+W+ + L +S RI + G
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD---FLPVDPSTSNGRIKQLRSG- 164
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGI---ADANFTLQV 353
L + +++E+D G++ CVA N AG+ + AN ++V
Sbjct: 165 -----GLQIESSEETDQGKYECVASNSAGVRYSSPANLYVRV 201
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + AT++C P ISW+ + L +S RI +
Sbjct: 110 PTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKD---FLPVDPAASNGRIKQL---- 162
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAG 343
R +L + +++ESD G++ CVA N AG
Sbjct: 163 --RSGALQIESSEESDQGKYECVATNSAG 189
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+V A++SE + C VD A + WY +G+ + + FV+ + E + LV
Sbjct: 15 FVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESD--------FVVLENEGPHRR-LV 64
Query: 323 LTNAQESDSGRFYCVA 338
L Q SD G F CVA
Sbjct: 65 LPATQPSDGGEFQCVA 80
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P + + R + NAT+VC+V P + WY G+ ++ + Q +G
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF----KGG 58
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
Y + L++ + + D+ + A N+ G +L+V
Sbjct: 59 YHQ---LIIASVTDDDATVYQVRATNQGGSVSGTASLEV 94
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + + AT++C P I+W+ + L +S RI + G
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSG- 164
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGI---ADANFTLQV 353
+L + +++E+D G++ CVA N AG+ + AN ++V
Sbjct: 165 -----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
NL +DLS N+L S+ F S + + ++LA+N ++ + G L LD+ +R+
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRI 256
Query: 160 EHISPEAFTGAKSLESIKLNGNRL 183
P+ T K L S+ ++ N L
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNL 280
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 93 GALDGLTNLIEID-LSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVK 151
GALD L +L + L++ + + L +R LR L RN
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN------------------ 60
Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC 211
L + +S L ++P+AF L + L+ N L ++V+ L L + L NP C C
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSC 119
Query: 212 NMRSIKMW 219
+R ++ W
Sbjct: 120 ALRWLQRW 127
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + + AT++C P I+W+ + L +T+ ++ + I+Q
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD--FLPVDTSNNNGR----IKQLR 162
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGI---ADANFTLQVT 354
E +L + ++ESD G++ CVA N AG A AN ++ T
Sbjct: 163 SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + + AT++C P I+W+ + L +S RI + G
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSG- 164
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGI---ADANFTLQV 353
+L + +++E+D G++ CVA N AG+ + AN ++V
Sbjct: 165 -----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + + AT++C P I+W+ + L +S RI + G
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSG- 164
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGI---ADANFTLQV 353
+L + +++E+D G++ CVA N AG+ + AN ++V
Sbjct: 165 -----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P IR + + V E A + C++ P I WY G+ L+ + + +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKY---------KMSS 58
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL 351
R +L + ++ D G + C+A N G + + L
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 38/185 (20%)
Query: 42 IPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG--ALDGLT 99
+ +AP E Q++ + NNL+ P E L +KL C Q++ A
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVE----TSLQKXKKLGXLECLYNQLEGKLPAFGSEI 353
Query: 100 NLIEIDLSDNLLTSIPS-----------LTF--------------QSVRFLRDLNLARNP 134
L ++L+ N +T IP+ L+F +SV ++ + N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNE 413
Query: 135 ISKIEKGAFQFVP-------GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
I ++ F + + +++S +++ E F+ L SI L GN L+ P
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIP 473
Query: 188 VRSVE 192
S++
Sbjct: 474 KNSLK 478
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL-------TN 100
+E + L + N L+ +P F + + + IG +D D L N
Sbjct: 376 TEQVENLSFAHNKLKYIPN-IFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434
Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGA-------FQFVPGLVKLD 153
+ I+LS+N ++ P F + L +NL N +++I K + F+ L +D
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSID 494
Query: 154 MSESRLEHISPE-AFTGAKSLESIKLNGNRLSHFPVR 189
+ ++L +S + T L I L+ N S FP +
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 88 GQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP 147
G S D +++ +D+S N+L+ S+ +L LNL N IS +
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 148 GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
GL LD+S ++L+ P+A + L I L+ N LS P+ + + +NP
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG-PIPEMGQFETFPPAKFLNNPG 736
Query: 208 VC 209
+C
Sbjct: 737 LC 738
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 88 GQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP 147
G S D +++ +D+S N+L+ S+ +L LNL N IS +
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 148 GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
GL LD+S ++L+ P+A + L I L+ N LS P+ + + +NP
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG-PIPEMGQFETFPPAKFLNNPG 739
Query: 208 VC 209
+C
Sbjct: 740 LC 741
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 293 RLLLNNTAFSSYQRIFVIEQGEYERKS---SLVLTNAQESDSGRFYCVAENRAGIADANF 349
R L N F RI G Y+ ++ SL++ + SD G + CV EN G + +
Sbjct: 52 RWLKNGKEFKQEHRI-----GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 106
Query: 350 TLQVTYRGVGLPFLGGG 366
L V R P L G
Sbjct: 107 HLDVVERSRHRPILQAG 123
>pdb|2D9C|A Chain A, Solution Structure Of The First Ig-Like Domain Of Signal-
Regulatory Protein Beta-1 (Sirp-Beta-1)
Length = 136
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 262 RYVEAVSSENATVVCRVDS-IPPAAISWYWN---GRLLLNNTAFSSYQRIFVIEQGEYER 317
+ V + E+AT+ C + S IP I W+ GR L+ N + R+ + E +
Sbjct: 16 KSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVS--ELTK 73
Query: 318 KS----SLVLTNAQESDSGRFYCVAENRAGIADANF 349
++ S+ ++N +D+G +YCV + D F
Sbjct: 74 RNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEF 109
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 293 RLLLNNTAFSSYQRIFVIEQGEYERKS---SLVLTNAQESDSGRFYCVAENRAGIADANF 349
R L N F RI G Y+ ++ SL++ + SD G + CV EN G + +
Sbjct: 52 RWLKNGKEFKQEHRI-----GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 106
Query: 350 TLQVTYRGVGLPFLGGG 366
L V R P L G
Sbjct: 107 HLDVVERSPHRPILQAG 123
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 293 RLLLNNTAFSSYQRIFVIEQGEYERKS---SLVLTNAQESDSGRFYCVAENRAGIADANF 349
R L N F RI G Y+ ++ SL++ + SD G + CV EN G + +
Sbjct: 42 RWLKNGKEFKQEHRI-----GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 96
Query: 350 TLQVTYRGVGLPFLGGG 366
L V R P L G
Sbjct: 97 HLDVVERSRHRPILQAG 113
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 293 RLLLNNTAFSSYQRIFVIEQGEYERKS---SLVLTNAQESDSGRFYCVAENRAGIADANF 349
R L N F RI G Y+ ++ SL++ + SD G + CV EN G + +
Sbjct: 44 RWLKNGKEFKQEHRI-----GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 98
Query: 350 TLQVTYRGVGLPFLGGG 366
L V R P L G
Sbjct: 99 HLDVVERSRHRPILQAG 115
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER 317
+M+ R ++ C P + W NG+ F RI G Y+
Sbjct: 15 KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK------EFKQEHRI-----GGYKV 63
Query: 318 KS---SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGG 366
++ SL++ + SD G + CV EN G + + L V R P L G
Sbjct: 64 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAG 115
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 293 RLLLNNTAFSSYQRIFVIEQGEYERKS---SLVLTNAQESDSGRFYCVAENRAGIADANF 349
R L N F RI G Y+ ++ SL++ + SD G + CV EN G + +
Sbjct: 43 RWLKNGKEFKQEHRI-----GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 97
Query: 350 TLQVTYRGVGLPFLGGG 366
L V R P L G
Sbjct: 98 HLDVVERSPHRPILQAG 114
>pdb|2JJU|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp) Beta
pdb|2JJU|B Chain B, Structure Of Human Signal Regulatory Protein (Sirp) Beta
Length = 127
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 262 RYVEAVSSENATVVCRVDS-IPPAAISWYWN---GRLLLNNTAFSSYQRIFVIEQGEYER 317
+ V + E+AT+ C + S IP I W+ GR L+ N + R+ + E +
Sbjct: 11 KSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVS--ELTK 68
Query: 318 KS----SLVLTNAQESDSGRFYCVAENRAGIADANF 349
++ S+ ++N +D+G +YCV + D F
Sbjct: 69 RNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEF 104
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 293 RLLLNNTAFSSYQRIFVIEQGEYERKS---SLVLTNAQESDSGRFYCVAENRAGIADANF 349
R L N F RI G Y+ ++ SL++ + SD G + CV EN G + +
Sbjct: 44 RWLKNGKEFKQEHRI-----GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 98
Query: 350 TLQVTYRGVGLPFLGGG 366
L V R P L G
Sbjct: 99 HLDVVERWPHRPILQAG 115
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 279 DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS-LVLTNAQESDSGRFYCV 337
D PP+ SW+ +G +L TA + R F+ + KS L+ DSG +YC
Sbjct: 130 DGSPPSEYSWFKDGISML--TADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQ 187
Query: 338 AENRAGIA 345
A+N G A
Sbjct: 188 AQNGYGTA 195
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P R VE + + + C + PP +SW+ + R L + + F+
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL----- 247
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAG 343
+S+ + N +D G + C A N G
Sbjct: 248 ----TSIHILNVDSADIGEYQCKASNDVG 272
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
V+ E+ T C V P I+W + R + +Y+ V E ++L +
Sbjct: 15 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---GNYKMTLV------ENTATLTV 65
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ D+G++ C A N AG + L V
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P R VE + + + C + PP +SW+ + R L + + F+
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL----- 247
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAG 343
+S+ + N +D G + C A N G
Sbjct: 248 ----TSIHILNVDSADIGEYQCKASNDVG 272
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
V+ E+ T C V P I+W + R + +Y+ V E ++L +
Sbjct: 15 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---GNYKMTLV------ENTATLTV 65
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ D+G++ C A N AG + L V
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
C+ + P W NG LL IEQG +L +T SD+G +
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQ-------IEQG------TLNITIVNLSDAGMYQ 363
Query: 336 CVAENRAGIADANFTLQV 353
CVAEN+ G+ ++ L V
Sbjct: 364 CVAENKHGVIFSSAELSV 381
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
C+ + P W NG LL IEQG +L +T SD+G +
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQ-------IEQG------TLNITIVNLSDAGMYQ 362
Query: 336 CVAENRAGIADANFTLQV 353
CVAEN+ G+ ++ L V
Sbjct: 363 CVAENKHGVIFSSAELSV 380
>pdb|2UV3|A Chain A, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2UV3|B Chain B, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2JJS|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJS|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJT|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
pdb|2JJT|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
Length = 126
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 262 RYVEAVSSENATVVCRVDS-IPPAAISWYWNG---RLLLNNTAFSSYQRIFVIEQGEYER 317
+ V + E+A + C V S IP I W+ R L+ N + R+ + +
Sbjct: 11 KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRE 70
Query: 318 KS--SLVLTNAQESDSGRFYCVAENRAGIADANF 349
S+ ++N +D+G +YCV + R G D F
Sbjct: 71 NMDFSISISNITPADAGTYYCV-KFRKGSPDTEF 103
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 262 RYVEAVSSENATVVCRVDS-IPPAAISWYWNG---RLLLNNTAFSSYQRIFVIEQGEYER 317
+ V + E+A + C V S IP I W+ R L+ N + R+ + +
Sbjct: 11 KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRE 70
Query: 318 KS--SLVLTNAQESDSGRFYCVAENRAGIADANF 349
S+ ++N +D+G +YCV + R G D F
Sbjct: 71 NMDFSISISNITPADAGTYYCV-KFRKGSPDTEF 103
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 73/179 (40%), Gaps = 41/179 (22%)
Query: 177 KLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPE 236
KL+G++ S + S EPLL + ++ D +C +IK + + + P+
Sbjct: 243 KLDGSQTSKW--LSSEPLLHIQNVDFEDEG-TYECEAENIKGRDTYQGRIIIH---AQPD 296
Query: 237 RLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL 296
L V +D AD I D R+ C P A+ W +G+ L
Sbjct: 297 WLD--VITDTEAD-------IGSDLRWS-----------CVASGKPRPAVRWLRDGQPL- 335
Query: 297 NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI--ADANFTLQV 353
+S RI V G R S LVL DSG + CVAEN+ G A A T+Q
Sbjct: 336 -----ASQNRIEV--SGGELRFSKLVL-----EDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+ E + E T+ CR + PPA W NG L S Y+ + LV
Sbjct: 16 FPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPD-SRYRLV----------AGDLV 64
Query: 323 LTN-AQESDSGRFYCVAENRAG 343
++N + D+G + CVA N G
Sbjct: 65 ISNPVKAKDAGSYQCVATNARG 86
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 293 RLLLNNTAFSSYQRIFVIEQGEYERKS---SLVLTNAQESDSGRFYCVAENRAGIADANF 349
R L N F RI G Y+ ++ SL+ + SD G + CV EN G + +
Sbjct: 51 RWLKNGKEFKQEHRI-----GGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTY 105
Query: 350 TLQVTYRGVGLPFLGGG 366
L V R P L G
Sbjct: 106 HLDVVERSPHRPILQAG 122
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 293 RLLLNNTAFSSYQRIFVIEQGEYERKS---SLVLTNAQESDSGRFYCVAENRAGIADANF 349
R L N F RI G Y+ ++ SL+ + SD G + CV EN G + +
Sbjct: 44 RWLKNGKEFKQEHRI-----GGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTY 98
Query: 350 TLQVTYRGVGLPFLGGG 366
L V R P L G
Sbjct: 99 HLDVVERSPHRPILQAG 115
>pdb|2JJV|A Chain A, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
pdb|2JJV|B Chain B, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
Length = 127
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 262 RYVEAVSSENATVVCRVDS-IPPAAISWYWN---GRLLLNNTAFSSYQRIFVIEQ--GEY 315
+ + + E+AT+ C V S IP I W+ GR L+ N + R+ +
Sbjct: 11 KSISVAAGESATLHCTVTSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRN 70
Query: 316 ERKSSLVLTNAQESDSGRFYCV 337
S+ ++N +D+G +YCV
Sbjct: 71 NMDFSIRISNITPADAGTYYCV 92
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 270 ENATVVCRVDSIPPAAISWYW------NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
E A +VC+ +S+PP W W + L+N S R FV + +S L +
Sbjct: 99 ETAMLVCKSESVPPVT-DWAWYKITDSEDKALMNG----SESRFFV---SSSQGRSELHI 150
Query: 324 TNA-QESDSGRFYCVAENRAGIADANFTLQV 353
N E+D G++ C + G A TL+V
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 250 DFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFV 309
D A + +RM S V +N + V S P A + WY NG L ++ V
Sbjct: 6 DHAPRITLRMRSHRVPC--GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ +L + + DSG + V N G A TL VT
Sbjct: 64 L---------TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
A S + C V P ++W NG +++ + F + S+L +
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYF------------QIVGGSNLRILG 371
Query: 326 AQESDSGRFYCVAENRAGIADANFTLQV 353
+SD G + CVAEN AG A ++ L V
Sbjct: 372 VVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
V A+ ++A + C V PP + +W L + + + G S+L++
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTW------LRGEEVIQLRSKKYSLLGG-----SNLLI 279
Query: 324 TNAQESDSGRFYCVA--ENRAGIADANFTLQV 353
+N + DSG + CV +N A A T+ V
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTVLV 311
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 274 VVCRVDSIPPAAISWYWNGRLL--LNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS 331
+ C V S PPA+I W + +L N T +Y RK L + ++D
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST---------GRKMILEIAPTSDNDF 170
Query: 332 GRFYCVAENRAGIADANFTL 351
GR+ C A N G + L
Sbjct: 171 GRYNCTATNHIGTRFQEYIL 190
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIF--VIEQGEYERKSSLVLTNAQES 329
T+VC + P I+W + ++ F+ + IE SSL + + + S
Sbjct: 18 VTLVCDAEGEPIPEITW----KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 330 DSGRFYCVAENRAGIADANFTLQVTY 355
DSGR+ C A +R G + L + Y
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEY 99
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
Query: 291 NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
NGRL +AF S +R R S+L + +AQ DSG ++C AE +G
Sbjct: 56 NGRL---KSAFDSKER----------RYSTLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
Query: 291 NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
NGRL +AF S +R R S+L + +AQ DSG ++C AE +G
Sbjct: 56 NGRL---KSAFDSKER----------RYSTLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 71/148 (47%), Gaps = 18/148 (12%)
Query: 98 LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES 157
L NLI ++L DN +T + L +++ + +L L+ NP+ + A + + LD++ +
Sbjct: 62 LNNLIGLELKDNQITDLAPL--KNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST 117
Query: 158 RLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHD--NPWVCD----C 211
++ ++P A G +L+ + L+ N++++ + PL L ++ N V D
Sbjct: 118 QITDVTPLA--GLSNLQVLYLDLNQITN-----ISPLAGLTNLQYLSIGNAQVSDLTPLA 170
Query: 212 NMRSIKMWLADKKNVP-VQPACTGPERL 238
N+ + AD + + P + P +
Sbjct: 171 NLSKLTTLKADDNKISDISPLASLPNLI 198
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 274 VVCRVDSIPPAAISWYWNGRLL--LNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS 331
+ C V S PPA+I W + +L N T +Y RK L + ++D
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST---------GRKMILEIAPTSDNDF 170
Query: 332 GRFYCVAENRAGIADANFTL 351
GR+ C A N G + L
Sbjct: 171 GRYNCTATNHIGTRFQEYIL 190
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIF--VIEQGEYERKSSLVLTNAQES 329
T+VC + P I+W + ++ F+ + IE SSL + + + S
Sbjct: 18 VTLVCDAEGEPIPEITW----KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 330 DSGRFYCVAENRAGIADANFTLQVTY 355
DSGR+ C A +R G + L + Y
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEY 99
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
S EN + C S PPA SW+ NG T S Q +F+ N
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVNG------TFQQSTQELFI--------------PNIT 256
Query: 328 ESDSGRFYCVAENR-AGIADANFTLQVTYRGVGLPFLGGGHIN 369
++SG + C A N G+ T Y PF+ + N
Sbjct: 257 VNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSN 299
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 20/73 (27%)
Query: 271 NATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD 330
N ++ C S PPA SW +G I+Q E L ++N E +
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGN----------------IQQHTQE----LFISNITEKN 437
Query: 331 SGRFYCVAENRAG 343
SG + C A N A
Sbjct: 438 SGLYTCQANNSAS 450
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFT-LQVTYRGVG 359
L + N++E D G++ CVAEN G + T L V R VG
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
++++ + + +++C S P + WY + + T ++ V+ + +L
Sbjct: 223 QFIDVELASSYSLLCMAQSYPTPSFRWY---KFIEGTTR----KQAVVLNDRVKQVSGTL 275
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
++ +A DSG++ CV N G L VT
Sbjct: 276 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 308
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESR 158
N IE+ L I F L + +++N + + IE F +P L ++ + ++
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 159 -LEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKLMMIELHDN 205
L +I+PEAF +L+ + ++ + H P V + L K+++ ++ DN
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQDN 138
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 98 LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES 157
L NLI ++L DN +T + L +++ + +L L+ NP+ + A + + LD++ +
Sbjct: 68 LNNLIGLELKDNQITDLTPL--KNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST 123
Query: 158 RLEHISPEAFTGAKSLESIKLNGNRLSHF 186
++ ++P A G +L+ + L+ N++++
Sbjct: 124 QITDVTPLA--GLSNLQVLYLDLNQITNI 150
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Query: 291 NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
NGRL +AF S E R S+L + +AQ DSG ++C AE +G
Sbjct: 56 NGRL---KSAFDS----------ERARYSTLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWN 291
E E+A VVCRV S P A+SW ++
Sbjct: 107 EFKQGEDAEVVCRVSSSPAPAVSWLYH 133
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ---FVPGLVKLDMSE 156
NL+ +D+S T+IP TF ++L + L N + I + F + G ++L S
Sbjct: 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASV 285
Query: 157 SRLEHISPEAFTGAKSLESIKLNGNRLS 184
+ +E AF G +L + G++++
Sbjct: 286 TAIEF---GAFXGCDNLRYVLATGDKIT 310
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 274 VVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR 333
+ C V PP +SW N + L ++ + E G R + + +DSG+
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCN-----LKFEAG---RTAYFTINGVSTADSGK 293
Query: 334 FYCVAENRAGIADANFTLQV 353
+ V +N+ G ++FT+ V
Sbjct: 294 YGLVVKNKYGSETSDFTVSV 313
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESR 158
N IE+ L I F L + +++N + + IE F +P L ++ + ++
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 159 -LEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKLMMIELHDN 205
L +I+PEAF +L+ + ++ + H P V + L K+++ ++ DN
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQDN 138
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER 317
+M+ R ++ C P + W NG+ F RI G Y+
Sbjct: 12 KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK------EFKQEHRI-----GGYKV 60
Query: 318 KS---SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ SL++ + SD G + CV EN G + + L V
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 283 PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA 342
P + W +G++L + + + EQ ++ S L +T+ Q SD+G++ C+
Sbjct: 32 PPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF--- 88
Query: 343 GIADANFTLQVTYRGV-GLPFL 363
+ F Q Y G+ GLP+
Sbjct: 89 -LGHQTFVSQPGYVGLEGLPYF 109
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+E + + +++C P + WY + + T ++ V+ + +L++
Sbjct: 228 LELMVAHTISLLCPAQGFPAPSFRWY---KFIEGTTR----KQAVVLNDRVKQVSGTLII 280
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+A DSG++ CV N G L VT
Sbjct: 281 KDAVVEDSGKYLCVVNNSVGGESVETVLTVT 311
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+E + + +++C P + WY + + T ++ V+ + +L++
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWY---KFIEGTTR----KQAVVLNDRVKQVSGTLII 274
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+A DSG++ CV N G L VT
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 318 KSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTY 355
+ SLV Q SD G + C AE AG+A + + + TY
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTY 99
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER 317
+M+ R ++ C P + W NG+ F RI G Y+
Sbjct: 17 KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK------EFKQEHRI-----GGYKV 65
Query: 318 KS---SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ SL++ + SD G + CV EN G + + L V
Sbjct: 66 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 104
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER 317
+M+ R ++ C P + W NG+ F RI G Y+
Sbjct: 16 KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK------EFKQEHRI-----GGYKV 64
Query: 318 KS---SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ SL++ + SD G + CV EN G + + L V
Sbjct: 65 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 103
>pdb|4G6F|L Chain L, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|D Chain D, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 215
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 273 TVVCRVDSIPPAAISWYW----NGRLLL----NNTAFSSYQRIFVIEQGEYERKSSLVLT 324
T+ CR DS+ SWY +LL NN R G ++SL ++
Sbjct: 19 TITCRGDSLRSHYASWYQKKPGQAPILLFYGKNNRPSGVPDRFSGSASGN---RASLTIS 75
Query: 325 NAQESDSGRFYCVAENRAG 343
AQ D +YC + +++G
Sbjct: 76 GAQAEDDAEYYCSSRDKSG 94
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 274 VVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR 333
+ C V PP +SW N + L + E G R + + +DSG+
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCN-----LKFEAG---RTAYFTINGVSTADSGK 188
Query: 334 FYCVAENRAGIADANFTLQV 353
+ V +N+ G ++FT+ V
Sbjct: 189 YGLVVKNKYGSETSDFTVSV 208
>pdb|2CDF|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide-Specific T Cell Receptors
(Tcr 5e)
Length = 191
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWY----WNGRLLL----NNTAFSSYQRI 307
++ +++ EN TV C S+ +++ WY G +LL +R+
Sbjct: 2 QVEQSPQFLSIQEGENLTVYCNSSSVF-SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRL 60
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVG 359
+ G+ + SSL +T AQ D+G + C +R TL Y G G
Sbjct: 61 -TFQFGDARKDSSLHITAAQPGDTGLYLCAGADRGS------TLGRLYFGRG 105
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAG 343
ER S+L + +AQ DSG ++C AE +G
Sbjct: 69 ERYSTLHIRDAQLEDSGTYFCAAEPSSG 96
>pdb|1OGA|D Chain D, A Structural Basis For Immunodominant Human T-Cell
Receptor Recognition
Length = 215
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWY----WNGRLLL----NNTAFSSYQRIFVIEQG 313
+++ EN TV C S+ +++ WY G +LL +R+ + G
Sbjct: 9 QFLSIQEGENLTVYCNSSSVF-SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRL-TFQFG 66
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG 343
+ + SSL +T AQ D+G + C G
Sbjct: 67 DARKDSSLHITAAQPGDTGLYLCAGAGSQG 96
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
R V VS A + C V PP + W G+ L + S F + E+ L
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS-----FPADGAEH----GL 72
Query: 322 VLTNAQESDSGRFYCVAEN 340
+LT A +D+G + C A N
Sbjct: 73 LLTAALPTDAGVYVCRARN 91
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFT-LQVTYRGV 358
L + N++E D G++ CVAEN G + T L V R V
Sbjct: 167 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV 205
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 72 AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
AGL LQ L+L++ HI D AL GL NL ++L
Sbjct: 172 AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 204
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
R V VS A + C V PP + W G+ L + S F + E+ L
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS-----FPADGAEH----GL 72
Query: 322 VLTNAQESDSGRFYCVAEN 340
+LT A +D+G + C A N
Sbjct: 73 LLTAALPTDAGVYVCRARN 91
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 271 NATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD 330
A + C+ P ISW G ++ Q EQG +L + N + SD
Sbjct: 25 TALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-----EQG------TLQIKNLRISD 73
Query: 331 SGRFYCVAENRAGIADANFTLQVTYRG 357
+G + CVA + +G + L VT G
Sbjct: 74 TGTYTCVATSSSGETSWSAVLDVTESG 100
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I ++ A+ E + C + S PP I+W W +L + T+ E+G
Sbjct: 14 PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73
Query: 314 EYERKSSLVLTNAQESDSGRFY-CVAENRAG 343
S+L ++N +D Y C A N G
Sbjct: 74 VI---STLTISNIVRADFQTIYNCTAWNSFG 101
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 319 SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVG 359
+S+ +TN Q SD G + C + G+A+ F L V + G
Sbjct: 84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 124
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
R V VS A + C V PP + W G+ L + S F + E+ L
Sbjct: 21 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS-----FPADGAEH----GL 71
Query: 322 VLTNAQESDSGRFYCVAEN 340
+LT A +D+G + C A N
Sbjct: 72 LLTAALPTDAGVYVCRARN 90
>pdb|3FFC|D Chain D, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|I Chain I, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
Length = 202
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 27/92 (29%)
Query: 270 ENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYE------------ 316
E T+ C D+ P+ + WY SS + IFVI QG Y+
Sbjct: 15 EAVTLDCTYDTSDPSYGLFWYKQP---------SSGEMIFVIYQGSYDQGNATEGRYSLN 65
Query: 317 ----RKSS-LVLTNAQESDSGRFYCVAENRAG 343
RKS+ LV++ +Q DS ++C G
Sbjct: 66 FQKARKSANLVISASQLGDSAMYFCAMREDTG 97
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 282 PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR 341
P ISW +G L + +RI + R L++T ++SD+G++ CV N
Sbjct: 140 PEPTISWKKDGSPLDDKD-----ERITI-------RGGKLMITYTRKSDAGKYVCVGTNM 187
Query: 342 AG 343
G
Sbjct: 188 VG 189
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 319 SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVG 359
+S+ +TN Q SD G + C + G+A+ F L V + G
Sbjct: 86 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 126
>pdb|1KJ2|A Chain A, Murine Alloreactive Scfv Tcr-peptide-mhc Class I Molecule
Complex
pdb|1KJ2|D Chain D, Murine Alloreactive Scfv Tcr-peptide-mhc Class I Molecule
Complex
Length = 111
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
F I + E+K SL +T++Q DS ++C A + G A
Sbjct: 61 FTIFFNKREKKLSLHITDSQPGDSATYFCAARYQGGRA 98
>pdb|1KB5|A Chain A, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 115
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
F I + E+K SL +T++Q DS ++C A + G A
Sbjct: 61 FTIFFNKREKKLSLHITDSQPGDSATYFCAARYQGGRA 98
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
S LT++ +S + QI + AGL LQ L+L++ HI D AL GL NL ++L
Sbjct: 153 SRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 207
>pdb|2VLJ|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLK|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLM|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|I Chain I, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
Length = 201
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWY----WNGRLLL----NNTAFSSYQRIFVIEQG 313
+++ EN TV C S+ +++ WY G +LL +R+ + G
Sbjct: 9 QFLSIQEGENLTVYCNSSSVF-SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRL-TFQFG 66
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG 343
+ + SSL +T AQ D+G + C G
Sbjct: 67 DARKDSSLHITAAQPGDTGLYLCAGAGSQG 96
>pdb|2XN9|A Chain A, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|2XNA|A Chain A, Crystal Structure Of The Complex Between Human T Cell
Receptor And Staphylococcal Enterotoxin
Length = 204
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWY----WNGRLLL----NNTAFSSYQRIFVIEQG 313
+++ EN TV C S+ +++ WY G +LL +R+ + G
Sbjct: 9 QFLSIQEGENLTVYCNSSSVF-SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRL-TFQFG 66
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG 343
+ + SSL +T AQ D+G + C G
Sbjct: 67 DARKDSSLHITAAQPGDTGLYLCAGAGSQG 96
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 72 AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
AGL LQ L+L++ HI D AL GL NL ++L
Sbjct: 195 AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 227
>pdb|3MLR|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ny5 V3 Peptide
pdb|3MLS|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Mab 2557 Fab In Complex
With A Hiv- 1 Gp120 V3 Mimotope
pdb|3MLS|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Mab 2557 Fab In Complex
With A Hiv- 1 Gp120 V3 Mimotope
pdb|3MLS|N Chain N, Crystal Structure Of Anti-Hiv-1 V3 Mab 2557 Fab In Complex
With A Hiv- 1 Gp120 V3 Mimotope
pdb|3MLS|O Chain O, Crystal Structure Of Anti-Hiv-1 V3 Mab 2557 Fab In Complex
With A Hiv- 1 Gp120 V3 Mimotope
pdb|3MLT|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ug1033 V3 Peptide
pdb|3MLT|A Chain A, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ug1033 V3 Peptide
pdb|3MLT|D Chain D, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ug1033 V3 Peptide
pdb|3MLT|G Chain G, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ug1033 V3 Peptide
Length = 219
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 270 ENATVVCRVDSIPPAAISWYWN----GRLLLNNTAFSSYQRIFVIEQGEYERKS-SLVLT 324
+ A++ C D + +SWY+ +LL F I G K+ +L ++
Sbjct: 16 QTASISCSGDKLDDKYVSWYYQRPGQSPVLLMYQDFKRPSGIPERLSGSKSGKTATLTIS 75
Query: 325 NAQESDSGRFYCVA-ENRAGIADANFTLQVTY-RGVGLPFLG 364
Q D G +YC A + G++ L V + G L LG
Sbjct: 76 GTQSLDEGDYYCQAWDASTGVSGGGTKLTVLFGDGTRLTVLG 117
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P+I+++ + + E A +VC + G L S +Q +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY------ 240
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
Y++ +L L D+G + CVA N G A QV
Sbjct: 241 YKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P+I+++ + + E A +VC + G L S +Q +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY------ 240
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
Y++ +L L D+G + CVA N G A QV
Sbjct: 241 YKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
S LT++ +S + QI + AGL LQ L+L++ HI D AL GL NL ++L
Sbjct: 153 SRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 72 AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
AGL LQ L+L++ HI D AL GL NL ++L
Sbjct: 173 AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,053,443
Number of Sequences: 62578
Number of extensions: 768998
Number of successful extensions: 2734
Number of sequences better than 100.0: 221
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1989
Number of HSP's gapped (non-prelim): 509
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)