RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1672
(600 letters)
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 275 bits (706), Expect = 9e-88
Identities = 81/353 (22%), Positives = 133/353 (37%), Gaps = 35/353 (9%)
Query: 13 SVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRR 71
SV SCP+ C+C + C + L +P++ P T +LD+S NNL L E
Sbjct: 8 SVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSY--TALLDLSHNNLSRLRAEWTP- 60
Query: 72 AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA 131
L NL L L+ H+ I S A + NL +DLS N L ++ F ++ L L L
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120
Query: 132 RNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA---KSLESIKLNGNRLSHFPV 188
N I +++ AF+ + L KL +S++++ E L + L+ N+L P+
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180
Query: 189 RSVEPL--LKLMMIELHDNPWVCDCNMRSIKMWLADKK-----NVPVQPACTGPERLSGK 241
++ L + LH+NP CDC + + ++ + C ++L
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI 240
Query: 242 VFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAF 301
D F C EA + T+ C + + +L+
Sbjct: 241 ----FSLDFFNCSEYK---ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLS---- 289
Query: 302 SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ G L Q D G + C A + L+V
Sbjct: 290 QGSNGSVSVRNG------DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 262 bits (671), Expect = 2e-81
Identities = 82/307 (26%), Positives = 137/307 (44%), Gaps = 18/307 (5%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEIDLSDNL 110
+ L + N ++ +P AF + +L +L L + I GA +GL NL ++L
Sbjct: 150 RELWLRNNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
+ +P + L +L ++ N +I G+F + L KL + S++ I AF G
Sbjct: 208 IKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265
Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKK--NVPV 228
SL + L N LS P PL L+ + LH NPW CDC++ + WL + N
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTC 325
Query: 229 QPACTGPERLSGKVFSDLHADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAIS 287
C P + G+ ++ F C P I R + A + CR P +++
Sbjct: 326 CGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVK 383
Query: 288 WYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA 347
W +L++ S + RI V+ G +L ++ SD+G + C+ N AG ++A
Sbjct: 384 WLLPNGTVLSHA--SRHPRISVLNDG------TLNFSHVLLSDTGVYTCMVTNVAGNSNA 435
Query: 348 NFTLQVT 354
+ L V+
Sbjct: 436 SAYLNVS 442
Score = 120 bits (303), Expect = 2e-29
Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 32/205 (15%)
Query: 3 LVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNL 61
+ +CPS C C + + C + L +P+ P + T+ L++ NN+
Sbjct: 32 CAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSN--TRYLNLMENNI 87
Query: 62 QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQS 121
Q++ + FR L +L + L N + I F
Sbjct: 88 QMIQADTFR--------------------------HLHHLEVLQLGRNSIRQIEVGAFNG 121
Query: 122 VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL-NG 180
+ L L L N ++ I GAF+++ L +L + + +E I AF SL + L
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 181 NRLSHFPVRSVEPLLKLMMIELHDN 205
+L + + E L L + L
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMC 206
Score = 78.6 bits (194), Expect = 1e-15
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
++ + L+ +P + R LNL N I I+ F+ + L L + + +
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 160 EHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
I AF G SL +++L N L+ P + E L KL + L +NP
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 250 bits (639), Expect = 8e-77
Identities = 88/307 (28%), Positives = 139/307 (45%), Gaps = 17/307 (5%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEIDLSDNL 110
+ L + N ++ +P AF + +L++L L + I GA +GL+NL ++L+
Sbjct: 139 KELWLRNNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
L IP + L +L+L+ N +S I G+FQ + L KL M +S+++ I AF
Sbjct: 197 LREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254
Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKK--NVPV 228
+SL I L N L+ P PL L I LH NPW C+C++ + W+ D N
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTAC 314
Query: 229 QPACTGPERLSGKVFSDLHADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAIS 287
C P L G+ +L + F C P I + A + CR + ++S
Sbjct: 315 CARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVS 373
Query: 288 WYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA 347
W ++ + + RI V+ G +L TN D+G + C+ N G A
Sbjct: 374 WITPNGTVMTHG--AYKVRIAVLSDG------TLNFTNVTVQDTGMYTCMVSNSVGNTTA 425
Query: 348 NFTLQVT 354
+ TL VT
Sbjct: 426 SATLNVT 432
Score = 117 bits (295), Expect = 2e-28
Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 32/205 (15%)
Query: 3 LVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNL 61
L++ S +CPS C C + + C K L +P+ + T++L++ N +
Sbjct: 21 LLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTN--TRLLNLHENQI 76
Query: 62 QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQS 121
QI+ +F+ L +L + LS N + +I F
Sbjct: 77 QIIKVNSFK--------------------------HLRHLEILQLSRNHIRTIEIGAFNG 110
Query: 122 VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL-NG 180
+ L L L N ++ I GAF ++ L +L + + +E I AF SL + L
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 181 NRLSHFPVRSVEPLLKLMMIELHDN 205
RLS+ + E L L + L
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMC 195
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 231 bits (592), Expect = 1e-69
Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 41/333 (12%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT------------ 99
+ L + NL +P EA + L L L L +I I + L
Sbjct: 155 EQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 100 ------------NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP 147
NL + ++ LT++P L + + +LR LNL+ NPIS IE +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 148 GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
L ++ + +L + P AF G L + ++GN+L+ + L + L NP
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Query: 208 VCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLH----ADDFACKPEIRMDSR- 262
CDC + + QP C PE + GK F D + F C+ D +
Sbjct: 333 ACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKA 392
Query: 263 -YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
V VCR D PP AI W + L++ S R+ V G +L
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA---KSNGRLTVFPDG------TL 443
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ AQ D+G + C+A N G L V
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 159 bits (404), Expect = 6e-43
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 7/193 (3%)
Query: 15 SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
+ CP C C + + + C K + +PE P T++LD+ N ++ L ++ F A
Sbjct: 1 TGCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTE--TRLLDLGKNRIKTLNQDEF--AS 54
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
+L++L L + ++ GA + L NL + L N L IP F + L L+++ N
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
I + FQ + L L++ ++ L +IS AF+G SLE + L L+ P ++
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 194 LLKLMMIELHDNP 206
L L+++ L
Sbjct: 175 LHGLIVLRLRHLN 187
Score = 133 bits (336), Expect = 1e-33
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
LD+S N + IL F+ L NL+ L + + I A GL +L ++ L L
Sbjct: 107 TKLDISENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES-RLEHISPEAFTGA 170
TSIP+ + L L L I+ I +F+ + L L++S L+ ++P G
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG- 223
Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
+L S+ + L+ P +V L+ L + L NP
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 191 bits (487), Expect = 1e-56
Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 3/203 (1%)
Query: 52 QVLDMSGNN-LQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
+ LD+S N L+ + F GL L L L RC + ++ G GL L + L DN
Sbjct: 83 EQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
L ++P TF+ + L L L N IS + + AF+ + L +L + ++R+ H+ P AF
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQP 230
L ++ L N LS P ++ PL L + L+DNPWVCDC R + WL + +
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260
Query: 231 ACTGPERLSGKVFSDLHADDFAC 253
C+ P+RL+G+ L A+D
Sbjct: 261 PCSLPQRLAGRDLKRLAANDLQG 283
Score = 115 bits (291), Expect = 5e-29
Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 31/191 (16%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
CP C+C + C + L +P P + +Q + + GN + +P +FR
Sbjct: 2 CPGACVCYNEPKVT-TSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFR----- 53
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP- 134
NL + L N+L I + F + L L+L+ N
Sbjct: 54 ---------------------ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
+ ++ F + L L + L+ + P F G +L+ + L N L P + L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 195 LKLMMIELHDN 205
L + LH N
Sbjct: 153 GNLTHLFLHGN 163
Score = 43.4 bits (103), Expect = 1e-04
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 27/104 (25%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI 162
L ++P + + + L N IS + +F+ L L
Sbjct: 15 TTSCPQQGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILW--------- 62
Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L+ N L+ + L L ++L DN
Sbjct: 63 ---------------LHSNVLARIDAAAFTGLALLEQLDLSDNA 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 166 bits (422), Expect = 5e-48
Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 32/241 (13%)
Query: 16 SCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGL 74
+CP C C+ ++C ++ L IPE P+ T L ++ N +L + L
Sbjct: 4 ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQY--TAELRLNNNEFTVLEATGIFK-KL 56
Query: 75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
L+K+ + I I+ GA +G + + EI L+ N L ++ F+ + L+ L L N
Sbjct: 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN- 115
Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
R+ + ++F G S+ + L N+++ + + L
Sbjct: 116 -----------------------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 195 LKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK 254
L + L NP+ C+C + + WL K+ V P C P L D+ DF C
Sbjct: 153 HSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCD 212
Query: 255 P 255
Sbjct: 213 D 213
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 164 bits (416), Expect = 3e-47
Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 33/241 (13%)
Query: 16 SCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGL 74
CP+ C C ++CR K L IP PE+ + + N ++++P AF
Sbjct: 4 HCPAACTCS----NNIVDCRGKGLTEIPTNLPET--ITEIRLEQNTIKVIPPGAFS--PY 55
Query: 75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
L+++ L+ I ++ A GL +L + L N +T +P F+ + L+ L L N
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
I+ + AFQ L +L + L N+L + PL
Sbjct: 116 INCLRVDAFQ------DL------------------HNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 195 LKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK 254
+ + L NP++CDC+++ + +L CT P RL+ K + + F C
Sbjct: 152 RAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCS 211
Query: 255 P 255
Sbjct: 212 A 212
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 166 bits (422), Expect = 1e-46
Identities = 39/254 (15%), Positives = 83/254 (32%), Gaps = 17/254 (6%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEH 161
+ + + L +L + + +E + + L L + +S L
Sbjct: 12 GLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLA 221
++P+AF L + L+ N L ++V+ L L + L NP C C +R WL
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALR----WLQ 125
Query: 222 DKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSI 281
+ + + G+ + P +++ ++ + C+V+
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGR 185
Query: 282 PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR 341
W V++ G + + + C AEN
Sbjct: 186 GLEQAGWILTELEQSAT----------VMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235
Query: 342 AGIADANFTLQVTY 355
G A+ + + V++
Sbjct: 236 VGRAEVSVQVNVSF 249
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 154 bits (391), Expect = 1e-42
Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 36/232 (15%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
+ LD+S N + + F GL L+ L ++ Q+ + L NLI +D+S
Sbjct: 81 KYLDLSFNGVITMS-SNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 111 LTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ F + L L +A N F + L LD+S+ +LE +SP AF
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMM-------------------------IELHD 204
SL+ + ++ N + L L + + L
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
Query: 205 NPWVCDCNMRSIKMWLADKKNV---PVQPACTGPERLSGKVFSDLHADDFAC 253
N + C C +S W+ D++ + + C P G L + C
Sbjct: 258 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL---NITC 306
Score = 132 bits (335), Expect = 8e-35
Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
CPS C C + C K L ++P P S L++ N LQ LP F L
Sbjct: 1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSS--ATRLELESNKLQSLPHGVF--DKLT 52
Query: 76 NLQKLFLARCHI--GQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L KL L+ + S + G T+L +DLS N + ++ S F + L L+ +
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHS 111
Query: 134 PISKI-EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR-LSHFPVRSV 191
+ ++ E F + L+ LD+S + F G SLE +K+ GN +F
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171
Query: 192 EPLLKLMMIELHDN 205
L L ++L
Sbjct: 172 TELRNLTFLDLSQC 185
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 151 bits (383), Expect = 3e-39
Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 11/221 (4%)
Query: 40 ITIPEAPESELT--QVLDMSGNNL-QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
I A L Q LD + L ++ AF L L L ++ + G
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFL 445
Query: 97 GLTNLIEIDLSDN-LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
GLT+L + ++ N + S F + L L+L++ + +I G F + L L+MS
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS 215
+ L + + SL ++ + NR+ L L +N C C +
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565
Query: 216 IKMWLADKKNV---PVQPACTGPERLSGKVFSDLHADDFAC 253
W+ ++K Q C P ++ + D ++ C
Sbjct: 566 FLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDF--NNSTC 604
Score = 110 bits (278), Expect = 9e-26
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 6/165 (3%)
Query: 42 IPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNL 101
+ E L +P + + + + L+ + + S + + L
Sbjct: 4 LNPCIEVVPNITYQCMDQKLSKVPDDIPS-----STKNIDLSFNPLKILKSYSFSNFSEL 58
Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+DLS + +I + + L +L L NPI G+F + L L E++L
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSV-EPLLKLMMIELHDN 205
+ +L+ + + N + + + L L+ ++L N
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 101 bits (253), Expect = 1e-22
Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 22/188 (11%)
Query: 39 LITIPEAPESELTQVLDMSGNNLQILPKEAFRR-----------------AGLLNLQKLF 81
+ + + P+ Q L + L+ P L +L L
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356
Query: 82 LARCHIGQIDSGALDGL--TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI- 138
L+R + + L +L +DLS N + + F + L+ L+ + + ++
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVT 415
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV-EPLLKL 197
E AF + L+ LD+S + + F G SL ++K+ GN + +V L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475
Query: 198 MMIELHDN 205
++L
Sbjct: 476 TFLDLSKC 483
Score = 98.6 bits (246), Expect = 9e-22
Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 15/166 (9%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID-SGALDGLTNLIEIDLSDNL 110
+ L L L L+ L+KL +A I LTNL+ +DLS N
Sbjct: 107 ENLVAVETKLASLESFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 111 LTSIPSLTFQSVRFLRD----LNLARNPISKIEKGAFQFVPGLVKLDMSESRL-EHISPE 165
+ +I Q +R L+++ NPI I+ AFQ + L +L + + +I
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKT 223
Query: 166 AFTGAKSLESIKLNGNR------LSHFPVRSVEPLLKLMMIELHDN 205
L +L L F +E L + + E
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Score = 83.2 bits (206), Expect = 7e-17
Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 24/180 (13%)
Query: 47 ESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
L NL+I + + + L + D L N+ + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292
Query: 107 SDNLLTSIPS-------------------LTFQSVRFLRDLNLARNPISKIEKGAFQFVP 147
+ + + + FL+ L L N S +P
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALP 350
Query: 148 GLVKLDMSESRLEHISPEAFT--GAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L LD+S + L +++ G SL + L+ N + L +L ++ +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHS 409
Score = 81.6 bits (202), Expect = 2e-16
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 17/167 (10%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IGQIDSGALDGLTNLIEIDL 106
++ LDMS N + + +AF+ + L +L L I L L L L
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQ---GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236
Query: 107 SDNLLTSIPSL------TFQSVRFLR--DLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
+L + + + + L + F + + + ++
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296
Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
++++ +S+ + +L FP L L + L N
Sbjct: 297 IKYLEDVPKHF--KWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMN 338
Score = 45.8 bits (109), Expect = 4e-05
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 27/105 (25%)
Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
I D L+ +P S ++++L+ NP+ ++ +F L LD
Sbjct: 14 ITYQCMDQKLSKVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFSELQWLD-------- 62
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L+ + ++ L L + L NP
Sbjct: 63 ----------------LSRCEIETIEDKAWHGLHHLSNLILTGNP 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 141 bits (357), Expect = 3e-38
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 10/191 (5%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L ++GN +Q L AF +GL +LQKL ++ +++ + L L E++++ NL+
Sbjct: 79 STLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 112 TSIPSL-TFQSVRFLRDLNLARNPISKIEKGAFQFVPGL----VKLDMSESRLEHISPEA 166
S F ++ L L+L+ N I I + + + + LD+S + + I P A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM-RSIKMWLADKK- 224
F + L+ + L+ N+L P + L L I LH NPW C C + WL
Sbjct: 197 FKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 255
Query: 225 NVPVQPACTGP 235
C+G
Sbjct: 256 KEQGSAKCSGS 266
Score = 95.8 bits (239), Expect = 3e-22
Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 34/190 (17%)
Query: 18 PSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
P + +C + IP+ P S T+ LD+S N L+ L
Sbjct: 2 PCVEVV----PNITYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLG----------- 44
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
S + L +DLS + +I +QS+ L L L NPI
Sbjct: 45 ---------------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV-EPLL 195
+ GAF + L KL E+ L + K+L+ + + N + F + L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 196 KLMMIELHDN 205
L ++L N
Sbjct: 150 NLEHLDLSSN 159
Score = 62.7 bits (153), Expect = 5e-11
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
I + IP S ++L+L+ NP+ + +F P L LD+S ++
Sbjct: 10 ITYQCMELNFYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
I A+ L ++ L GN + + + L L + +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 146 bits (370), Expect = 2e-37
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 7/192 (3%)
Query: 15 SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
+S CI K + C + L IP P S T+ L+ S N L + F
Sbjct: 2 TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFS--R 55
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L+NL L L RC I I L + L+ N L + + L+ L +
Sbjct: 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
IS I+ L L + + + I + L+ + N + + +
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175
Query: 194 LLKLMMIELHDN 205
L + + L+ N
Sbjct: 176 LQQATNLSLNLN 187
Score = 125 bits (315), Expect = 2e-30
Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 57/256 (22%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ LD+S ++++ + L +LQ L L+ + + A L +DL+ L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 112 TSIPSLT-FQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI---SPEAF 167
+ + FQ++ L+ LNL+ + + + F +P L L++ + +
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472
Query: 168 TGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN---------------------- 205
LE + L+ LS + L + ++L N
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532
Query: 206 -------------------------PWVCDCNMRSIKMWLADKKNV---PVQPACTGPER 237
P C C+ W + C P
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPL 592
Query: 238 LSGKVFSDLHADDFAC 253
L G SD+ +C
Sbjct: 593 LRGVRLSDV---TLSC 605
Score = 113 bits (285), Expect = 1e-26
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 7/158 (4%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L ++ N L + + A G L+ LF + I ID L L + L N +
Sbjct: 84 DTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL--VKLDMSESRLEHISPEAFTG 169
+SI L+ L+ N I + K + + L+++ + + I P AF
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Query: 170 AKSLESIKLNGNRLSHFPVRSVE--PLLKLMMIELHDN 205
A +S+ G + + ++ + L + D
Sbjct: 202 A-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Score = 106 bits (267), Expect = 2e-24
Identities = 24/157 (15%), Positives = 60/157 (38%), Gaps = 4/157 (2%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ + + + F ++++ + L + + I S + L E+DL+ L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGA 170
+ +PS + L+ L L+ N + + + P L L + ++ +
Sbjct: 291 SELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 171 KSLESIKLNGNRLSHFPVRSVE--PLLKLMMIELHDN 205
++L + L+ + + +++ L L + L N
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Score = 102 bits (255), Expect = 7e-23
Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 5/172 (2%)
Query: 38 FLITIPEAPESELT-QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
+ I Q L+ G ++ + + + + +L I +
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 97 GL--TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
GL ++ I+L + +I S TF L++L+L +S++ G L KL +
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL-STLKKLVL 308
Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
S ++ E++ + + SL + + GN +E L L ++L +
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Score = 45.0 bits (107), Expect = 6e-05
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 27/104 (25%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI 162
+ + L IP L + L+ S + L I
Sbjct: 16 TYNCENLGLNEIPG------------TLPNS---------------TECLEFSFNVLPTI 48
Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
F+ +L + L ++ + + +L + L NP
Sbjct: 49 QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 139 bits (353), Expect = 6e-37
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 10/207 (4%)
Query: 3 LVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNL 61
++ V L SS ++ C + L +IP E+ + LD+S N +
Sbjct: 10 VLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEA--VKSLDLSNNRI 64
Query: 62 QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQS 121
+ + +NLQ L L I I+ + L +L +DLS N L+++ S F+
Sbjct: 65 TYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122
Query: 122 VRFLRDLNLARNPISKI-EKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKSLESIKLN 179
+ L LNL NP + E F + L L + I + F G LE ++++
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182
Query: 180 GNRLSHFPVRSVEPLLKLMMIELHDNP 206
+ L + +S++ + + + LH
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQ 209
Score = 131 bits (331), Expect = 8e-34
Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IGQIDSGALDGLTNLIEIDLSDNL 110
L++ GN + L + + L LQ L + +I GLT L E+++ +
Sbjct: 127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS------- 163
L S + +S++ + L L + + + L++ ++ L+
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245
Query: 164 ------------------------PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMM 199
+ L ++ + N+L P + L L
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305
Query: 200 IELHDNPWVCDCNM-RSIKMWLADKK-NVPVQPACTGP 235
I LH NPW C C + WL C+G
Sbjct: 306 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343
Score = 77.1 bits (190), Expect = 2e-15
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP 164
S L SIPS ++ ++ L+L+ N I+ I Q L L ++ + + I
Sbjct: 37 KGSSGSLNSIPSGLTEA---VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93
Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
++F+ SLE + L+ N LS+ +PL L + L NP+
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 133 bits (338), Expect = 1e-35
Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 28/262 (10%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PES--------------------ELTQ--V 53
C C K ++C K L IP P LT+ +
Sbjct: 8 DGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRL 65
Query: 54 LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTS 113
L ++ N LQ LP F L NL+ L++ + + G D L NL E+ L N L S
Sbjct: 66 LYLNDNKLQTLPAGIF--KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 114 IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSL 173
+P F S+ L L+L N + + KG F + L +L + ++L+ + AF L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 174 ESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM-RSIKMWLADKKNVPVQPAC 232
+++KL+ N+L P + + L KL M++L +NPW C CN + WL K + +
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVD 243
Query: 233 TGPERLSGKVFSDLHADDFACK 254
T GK ++ D A
Sbjct: 244 TAGCEKGGKAVLEITEKDAASD 265
Score = 61.9 bits (151), Expect = 8e-11
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 87 IGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV 146
+ + D G N +D S LT+IPS + L+L N +S + AF +
Sbjct: 4 LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPAD---TKKLDLQSNKLSSLPSKAFHRL 60
Query: 147 PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L L +++++L+ + F K+LE++ + N+L P+ + L+ L + L N
Sbjct: 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 135 bits (341), Expect = 2e-35
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 15 SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
+ CP C C + ++C D L +P+ T +LD+ N++ L K+ F G
Sbjct: 25 AMCPFGCHCH----LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELRKDDF--KG 76
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L +L L L I +I A L L ++ +S N L IP S L +L + N
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDN 133
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEH--ISPEAFTGAKSLESIKLNGNRLSHFPVRSV 191
I K+ KG F + + ++M + LE+ P AF G K L ++++ +L+ P
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDL- 191
Query: 192 EPLLKLMMIELHDN 205
L + L N
Sbjct: 192 --PETLNELHLDHN 203
Score = 112 bits (283), Expect = 1e-27
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q L +S N+L +P +L +L + I ++ G GL N+ I++ N L
Sbjct: 105 QKLYISKNHLVEIPPNLPS-----SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
Query: 112 TS--IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ F ++ L L ++ ++ I K L +L + ++++ I E
Sbjct: 160 ENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLR 215
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L + L N++ S+ L L + L +N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Score = 110 bits (276), Expect = 1e-26
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L +S L +PK+ L +L L I I+ L + L + L N +
Sbjct: 175 NYLRISEAKLTGIPKDLPE-----TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
I + + + LR+L+L N +S++ G + L + + + + + F
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVG 288
Query: 172 ------SLESIKLNGNRLSHFPVRSV--EPLLKLMMIELHDN 205
I L N + ++ V+ + + I+ +
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 103 bits (259), Expect = 2e-24
Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 12/152 (7%)
Query: 39 LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
L IP+ L + L + N +Q + E L +L L I I++G+L L
Sbjct: 184 LTGIPKDLPETLNE-LHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFL 240
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ------FVPGLVKL 152
L E+ L +N L+ +P+ ++ L+ + L N I+K+ F +
Sbjct: 241 PTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299
Query: 153 DMSESRLEH--ISPEAFTGAKSLESIKLNGNR 182
+ + + + + P F +I+ +
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 88.2 bits (219), Expect = 3e-19
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
+ +DL +N ++ + F+ ++ L L L N ISKI + AF + L KL +S++
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L I P SL ++++ NR+ P L + IE+ NP
Sbjct: 114 LVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 140 bits (355), Expect = 3e-35
Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 17/220 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q L + L+ + L NL L L+ +I I+ L+GL L +DL N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Query: 112 TSI--------PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+ P + + L LNL N +I F+ + L +D+ + L +
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK-LMMIELHDNPWVCDC-NMRSIKMWLA 221
F SL+S+ L N ++ + P + L +++ NP+ C C ++ W+
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636
Query: 222 DKKNVPVQPA----CTGPERLSGKVFSDL---HADDFACK 254
+ + + C P G D A
Sbjct: 637 ETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAHH 676
Score = 126 bits (319), Expect = 9e-31
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 7/176 (3%)
Query: 34 CRDKFLITIP-EAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
C L +P + P + VL+++ N L+ LP F L L + I +++
Sbjct: 11 CSHLKLTQVPDDLPTN--ITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEP 66
Query: 93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
L L ++L N L+ + TF L +L+L N I KI+ F L+ L
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVR--SVEPLLKLMMIELHDNP 206
D+S + L ++L+ + L+ N++ + L +EL N
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Score = 121 bits (305), Expect = 6e-29
Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 52 QVLDMSGNNLQI--LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
+ L +S + + L E F L L L + I +I+S A L +L +DL N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 110 LLT-SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI--SPEA 166
+ + ++ + + ++ L+ N ++ + +F VP L +L + L+++ SP
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475
Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
F ++L + L+ N +++ +E L KL +++L N
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514
Score = 119 bits (301), Expect = 2e-28
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 5/154 (3%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+V D S L +P + N+ L L + ++ + + L +D+ N +
Sbjct: 7 EVADCSHLKLTQVPDDLPT-----NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ + Q + L+ LNL N +S++ F F L +L + + ++ I F K
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+L ++ L+ N LS + + L L + L +N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155
Score = 114 bits (287), Expect = 8e-27
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ-IDSGALDGLTNLIEIDLSDNL 110
+L+++ N + + +AF L +L+ L L IGQ + GL N+ EI LS N
Sbjct: 384 HILNLTKNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEK--GAFQFVPGLVKLDMSESRLEHISPEAFT 168
+ +F V L+ L L R + ++ FQ + L LD+S + + +I+ +
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501
Query: 169 GAKSLESIKLNGNRLSHF--------PVRSVEPLLKLMMIELHDN 205
G + LE + L N L+ P+ ++ L L ++ L N
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Score = 112 bits (282), Expect = 3e-26
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 5/171 (2%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q L +S N +Q L E +L+KL L+ I + G + L + L++ L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 112 T-SIPSLTFQSVRF--LRDLNLARNPISKIEKGAFQF--VPGLVKLDMSESRLEHISPEA 166
S+ + +R+L+L+ + +S F L LD+S + L + ++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIK 217
F LE L N + H S+ L + + L + ++ S+
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Score = 105 bits (263), Expect = 9e-24
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ L +S + L F NL L L+ ++ + + + L L L N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 112 TSIPSLTFQSVRFLRDLNLARN---------PISKIEKGAFQFVPGLVKLDMSESRLEHI 162
+ S + + +R LNL R+ + KI+ +FQ++ L L+M ++ + I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344
Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRS 190
FTG +L+ + L+ + S + +
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTN 372
Score = 104 bits (262), Expect = 1e-23
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL- 110
+LD+S NNL ++ ++F L L+ FL +I + S +L GL N+ ++L +
Sbjct: 251 TMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 111 --------LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE-- 160
L I +FQ ++ L LN+ N I I+ F + L L +S S
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 161 HISPEAFTG--AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
++ E F L + L N++S + L L +++L N
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Score = 92.8 bits (231), Expect = 6e-20
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
+ + + + Q+ +T L +L+ N L +P+ F L L++ N I
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITVL---NLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
SK+E Q +P L L++ + L +S + F +L + L N +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 196 KLMMIELHDN 205
L+ ++L N
Sbjct: 122 NLITLDLSHN 131
Score = 77.7 bits (192), Expect = 4e-15
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
+ D S LT +P + + LNL N + ++ F L LD+ +
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ + PE L+ + L N LS ++ L + L N
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 139 bits (352), Expect = 3e-35
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 7/188 (3%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
+ LD+S N + + GL L+ L ++ Q+ + L NLI +D+S
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ F + L L +A N + F + L LD+S+ +LE +SP AF
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM-RSIKMWLADKKN-VP 227
SL+ + + N+L P + L L I LH NPW C C + WL
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 552
Query: 228 VQPACTGP 235
C+G
Sbjct: 553 GSAKCSGS 560
Score = 125 bits (317), Expect = 7e-31
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 34 CRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
C + IP+ P S T+ LD+S N L+ L +F LQ L L+RC I I+
Sbjct: 14 CMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIED 69
Query: 93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
GA L++L + L+ N + S+ F + L+ L ++ +E + L +L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 153 DMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKL----MMIELHDNP 206
+++ + ++ PE F+ +LE + L+ N++ + L ++ + ++L NP
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Score = 108 bits (272), Expect = 4e-25
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)
Query: 53 VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT 112
N +P + + L L+ + + S + L +DLS +
Sbjct: 11 TYQCMELNFYKIPDNLPF-----STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS 172
+I +QS+ L L L NPI + GAF + L KL E+ L + K+
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 173 LESIKLNGNRLSHFPV-RSVEPLLKLMMIELHDNPWVC 209
L+ + + N + F + L L ++L N
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 95.2 bits (237), Expect = 9e-21
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 17/188 (9%)
Query: 39 LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG-AL 95
+ ++ S L+ Q L NL L L L++L +A I
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYF 145
Query: 96 DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR----DLNLARNPISKIEKGAFQFVPGLVK 151
LTNL +DLS N + SI + + + L+L+ NP++ I+ GAF+ + L K
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204
Query: 152 LDMSESRLE-HISPEAFTGAKSLESIKL------NGNRLSHFPVRSVEPLLKLMMIELHD 204
L + + ++ G LE +L N L F ++E L L + E
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Query: 205 NPWVCDCN 212
+
Sbjct: 265 AYLDYYLD 272
Score = 67.4 bits (165), Expect = 6e-12
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 25/181 (13%)
Query: 47 ESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID-SGALDGLTNLIEID 105
L + NL+ K A L +++ LA D + LTN+
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 106 LSDNLLTSIPSLTFQ-------------------SVRFLRDLNLARNPISKIEKGAFQFV 146
L + + ++ ++ L+ L N + +
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDL 346
Query: 147 PGLVKLDMSESRLEHIS--PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHD 204
P L LD+S + L ++ G SL+ + L+ N + + L +L ++
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQH 405
Query: 205 N 205
+
Sbjct: 406 S 406
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 137 bits (347), Expect = 3e-35
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 2/181 (1%)
Query: 57 SGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPS 116
N + F+ ++ L++ I + T+L ++ L+ N + I
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Query: 117 LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESI 176
F + L LNL++N + I+ F+ + L LD+S + + + ++F G +L+ +
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 177 KLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM-RSIKMWLADKK-NVPVQPACTG 234
L+ N+L P + L L I LH NPW C C + WL C+G
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 436
Query: 235 P 235
Sbjct: 437 S 437
Score = 123 bits (311), Expect = 2e-30
Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 14/245 (5%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
S C C ++ L +PE P +D+S N++ L + +F L +
Sbjct: 4 GTSECSV----IGYNAICINRGLHQVPELPAH--VNYVDLSLNSIAELNETSFS--RLQD 55
Query: 77 LQKLFLARCHIGQ-IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
LQ L + + G I + GL++LI + L N + + F + L L L + +
Sbjct: 56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115
Query: 136 --SKIEKGAFQFVPGLVKLDMSESRLEHISPE-AFTGAKSLESIKLNGNRLSHFPVRSVE 192
+ + F+ + L L + ++ ++ I P F + + L N++ +
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175
Query: 193 PLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFA 252
L + +M + K P + LSG F + A F
Sbjct: 176 NFQGKHFTLL-RLSSITLQDMNEYWLGWE-KCGNPFKNTSITTLDLSGNGFKESMAKRFF 233
Query: 253 CKPEI 257
Sbjct: 234 DAIAG 238
Score = 80.2 bits (198), Expect = 4e-16
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L++S N L + F L L+ L L+ HI + + GL NL E+ L N L
Sbjct: 326 LKLNLSQNFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 112 TSIPSLTFQSVRFLRDLNLARNP 134
S+P F + L+ + L NP
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNP 406
Score = 71.7 bits (176), Expect = 2e-13
Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 28/180 (15%)
Query: 52 QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT--NLIEIDLSD 108
++L + NN++ I P F + L L + I L + + LS
Sbjct: 132 EMLVLRDNNIKKIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189
Query: 109 NLLTSIPSLTFQSVRF--------LRDLNLARNPISKIEKGAFQFVPGLVKL-------- 152
L + + + L+L+ N + F K+
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249
Query: 153 -----DMSESRLEHISPEAFTG--AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ + F G A +++ L+ +++ L + L N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 133 bits (337), Expect = 2e-34
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+++ + ++ LP ++ L L I +ID+ A + ++ + N +
Sbjct: 48 KIVTFKNSTMRKLPAALL--DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+P FQ+V L L L RN +S + +G F P L L MS + LE I + F
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
SL++++L+ NRL+H + + L + N
Sbjct: 166 SLQNLQLSSNRLTHVDLSL---IPSLFHANVSYN 196
Score = 121 bits (306), Expect = 4e-30
Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 12/169 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ LD S N++ ++ L L L ++ L L+E+DLS N L
Sbjct: 208 EELDASHNSINVVRGPVNV-----ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
I F ++ L L ++ N + + Q +P L LD+S + L H+
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QFD 318
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWL 220
LE++ L+ N + + L + L N W C+ +
Sbjct: 319 RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364
Score = 117 bits (294), Expect = 1e-28
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 24/170 (14%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL------------- 98
L MS NNL+ + + F+ +LQ L L+ + +D + L
Sbjct: 144 TTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201
Query: 99 ---TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
+ E+D S N + + L L L N ++ PGLV++D+S
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYPGLVEVDLS 256
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ LE I F + LE + ++ NRL +P+ L +++L N
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHN 305
Score = 115 bits (291), Expect = 3e-28
Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 12/173 (6%)
Query: 39 LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
+ + ELT L + NNL L ++ L+ + +I +
Sbjct: 217 INVVRGPVNVELTI-LKLQHNNLTDTA--WL--LNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
L + +S+N L ++ Q + L+ L+L+ N + +E+ QF L L + +
Sbjct: 272 QRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHNS 329
Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC 211
+ + +L+++ L+ N +R+ + + D C
Sbjct: 330 IVTLKLSTHH---TLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQHCKI 377
Score = 115 bits (291), Expect = 3e-28
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 1/173 (0%)
Query: 33 ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
+ R I + D+ + F L N + + + ++ +
Sbjct: 4 KPRQPEYKCID-SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62
Query: 93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
LD + ++L+D + I + F ++ L + N I + FQ VP L L
Sbjct: 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ + L + F L ++ ++ N L + + L ++L N
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 125 bits (317), Expect = 4e-33
Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 13/196 (6%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
C C ++ K + IP P S TQ L + +L+ +P AF L N
Sbjct: 4 SSPPCECH---QEEDFRVTCKDIQRIPSLPPS--TQTLKLIETHLRTIPSHAFS--NLPN 56
Query: 77 LQKLFLAR-CHIGQIDSGALDGLTNLIEIDLSDN-LLTSIPSLTFQSVRFLRDLNLARNP 134
+ +++++ + Q++S + L+ + I++ + LT I + + L+ L +
Sbjct: 57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116
Query: 135 ISKI-EKGAFQFVPGLVKLDMSE-SRLEHISPEAFTG-AKSLESIKLNGNRLSHFPVRSV 191
+ + L++++ + I AF G ++KL N + +
Sbjct: 117 LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176
Query: 192 EPLLKLMMIELHDNPW 207
KL + L+ N +
Sbjct: 177 N-GTKLDAVYLNKNKY 191
Score = 80.4 bits (199), Expect = 3e-17
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLAR-CHIGQIDSGALDGLTN-LIEIDLSDN 109
+ L + L++ P L + ++ I A GL N + + L +N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVP-GLVKLDMSESRLEHISPEAF 167
TS+ F + L + L +N ++ I+K AF V G LD+S++ + + +
Sbjct: 167 GFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225
Query: 168 TGAKSL 173
K L
Sbjct: 226 EHLKEL 231
Score = 68.9 bits (169), Expect = 3e-13
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEI-D 105
T L + N + AF L ++L + ++ ID A G+ + + D
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFN---GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211
Query: 106 LSDNLLTSIPSLTFQSVRFLRDLNL 130
+S +T++PS + ++ L N
Sbjct: 212 VSQTSVTALPSKGLEHLKELIARNT 236
Score = 68.1 bits (167), Expect = 4e-13
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 49 ELTQVLDMSGNN-LQILPKEAFRRAGLLN-LQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
++ +L+++ N + +P AF+ GL N L L + A +G T L + L
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQ--GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186
Query: 107 SDN-LLTSIPSLTFQSVR-FLRDLNLARNPISKIEKGAFQFVPGLVKLD 153
+ N LT I F V L++++ ++ + + + L+ +
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 132 bits (334), Expect = 5e-33
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+++ + ++ LP ++ L L I +ID+ A + ++ + N +
Sbjct: 54 KIVTFKNSTMRKLPAALL--DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+P FQ+V L L L RN +S + +G F P L L MS + LE I + F
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
SL++++L+ NRL+H + + L + N
Sbjct: 172 SLQNLQLSSNRLTHVDLSL---IPSLFHANVSYN 202
Score = 121 bits (306), Expect = 2e-29
Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 13/204 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ LD S N++ ++ L L L ++ D+ L L+E+DLS N L
Sbjct: 214 EELDASHNSINVVRGPVNV-----ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNEL 266
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
I F ++ L L ++ N + + Q +P L LD+S + L H+
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QFD 324
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPA 231
LE++ L+ N + + + L + L N W C+ ++ +A
Sbjct: 325 RLENLYLDHNSIVTLKLST---HHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQH 380
Query: 232 CTGPERLSGKVFSDLHADDFACKP 255
C +L + + +
Sbjct: 381 CKIDYQLEHGLCCKESDKPYLDRL 404
Score = 118 bits (297), Expect = 3e-28
Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 9/184 (4%)
Query: 27 GGKQW--MECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFR---RAGLLNLQKLF 81
GG+Q ++ R I S L ++ + ++ + L N + +
Sbjct: 2 GGQQRYNVKPRQPEYKCID----SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVT 57
Query: 82 LARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG 141
+ ++ + LD + ++L+D + I + F ++ L + N I +
Sbjct: 58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117
Query: 142 AFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIE 201
FQ VP L L + + L + F L ++ ++ N L + + L ++
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 202 LHDN 205
L N
Sbjct: 178 LSSN 181
Score = 116 bits (291), Expect = 2e-27
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 24/170 (14%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT------------ 99
L MS NNL+ + + F+ +LQ L L+ + +D + L
Sbjct: 150 TTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207
Query: 100 ----NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
+ E+D S N + + L L L N ++ PGLV++D+S
Sbjct: 208 AIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYPGLVEVDLS 262
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ LE I F + LE + ++ NRL +P+ L +++L N
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHN 311
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 124 bits (314), Expect = 2e-32
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 10/217 (4%)
Query: 14 VSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRA 72
+ +C + C GK+ ++C+ K L ++P P T+ LD+ L L FR
Sbjct: 1 MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPAD--TEKLDLQSTGLATLSDATFR-- 56
Query: 73 GLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLAR 132
GL L L L + + +G D LT L + L++N L S+P F + L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 133 NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
N + + G F + L +L ++ ++L+ I AF +L+++ L+ N+L P + +
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 193 PLLKLMMIELHDNPWVCDCNMRSI---KMWLADKKNV 226
L KL I L N + C I W+ + N
Sbjct: 177 RLGKLQTITLFGNQFDCSRC--EILYLSQWIRENSNK 211
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 128 bits (324), Expect = 8e-32
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 12/186 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q L +S N+L+ + K L NL L ++R + + ++LS +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGI 422
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ + Q+ L L+++ N + F+P L +L +S ++L+ + +
Sbjct: 423 RVVKTCIPQT---LEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASL--FP 473
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS-IKMWLADKKN-VPVQ 229
L +K++ N+L P + L L I LH NPW C C + WL
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 533
Query: 230 PACTGP 235
C+G
Sbjct: 534 AKCSGS 539
Score = 104 bits (261), Expect = 8e-24
Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 7/157 (4%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
+ V D + +P ++ L L+ I I G L NL + L +
Sbjct: 7 SGVCDGRSRSFTSIPSGLTA-----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTG 169
+ +I F S+ L L+L+ N +S + F + L L++ + + + F
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121
Query: 170 AKSLESIKL-NGNRLSHFPVRSVEPLLKLMMIELHDN 205
+L+++++ N S L L +E+
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158
Score = 100 bits (252), Expect = 1e-22
Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 5/185 (2%)
Query: 39 LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGAL 95
L ++ + L+ + L++ GN Q L + L NLQ L + +I
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDF 144
Query: 96 DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
GLT+L E+++ L + S + +S+R + L L + + + + + + L++
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC-DCNMR 214
++ L + +K R S S LLKL+ L + DC +
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264
Query: 215 SIKMW 219
+ +
Sbjct: 265 GLGDF 269
Score = 90.2 bits (224), Expect = 3e-19
Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)
Query: 50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
L + D + + ++ + + +++L + + ++ S L + I + ++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVE--TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKI---EKGAFQFVPGLVKLDMSESRLEHIS--P 164
+ +P Q ++ L L+L+ N + + P L L +S++ L +
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380
Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
E K+L S+ ++ N P S + K+ + L
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSST 420
Score = 79.8 bits (197), Expect = 8e-16
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP 164
D TSIPS + ++ L+L+ N I+ I G + L L + SR+ I
Sbjct: 11 DGRSRSFTSIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
+AF SLE + L+ N LS PL L + L NP
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Score = 72.8 bits (179), Expect = 1e-13
Identities = 21/191 (10%), Positives = 55/191 (28%), Gaps = 25/191 (13%)
Query: 38 FLITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL 95
+ E L+ + L++ NL + + +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP--VDEVSSPMKKLAFRGSVLTDESF 240
Query: 96 DGLTNLIEI------------------DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK 137
+ L L+ D + + + L +R L++ + +
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300
Query: 138 IEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP---L 194
+ + + ++ + S++ + KSLE + L+ N + +++
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360
Query: 195 LKLMMIELHDN 205
L + L N
Sbjct: 361 PSLQTLVLSQN 371
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 123 bits (312), Expect = 2e-31
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ L +S N L+ LP++ + LQ+L + I ++ +GL +I ++L N L
Sbjct: 103 ERLYLSKNQLKELPEKMPK-----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
Query: 112 TS--IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
S I + FQ ++ L + +A I+ I +G P L +L + +++ + + G
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKG 214
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
+L + L+ N +S S+ L + L++N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Score = 113 bits (286), Expect = 5e-28
Identities = 29/162 (17%), Positives = 69/162 (42%), Gaps = 14/162 (8%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ ++ N+ +P+ +L +L L I ++D+ +L GL NL ++ LS N +
Sbjct: 174 SYIRIADTNITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF---- 167
+++ + + + LR+L+L N + K+ G + + + + + I F
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287
Query: 168 --TGAKSLESIKLNGNRLSHFPVRSV--EPLLKLMMIELHDN 205
T S + L N + ++ ++ + ++L +
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 110 bits (276), Expect = 1e-26
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L + GN + + + + GL NL KL L+ I +D+G+L +L E+ L++N L
Sbjct: 195 TELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV------PGLVKLDMSESRLEH--IS 163
+P ++++ + L N IS I F + + + +++ I
Sbjct: 253 VKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311
Query: 164 PEAFTGAKSLESIKLNGNR 182
P F +++L +
Sbjct: 312 PSTFRCVYVRAAVQLGNYK 330
Score = 105 bits (264), Expect = 5e-25
Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 38/194 (19%)
Query: 15 SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
CP C C + ++C D L +P+ P T +LD+ N + + F+
Sbjct: 23 PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFK--- 73
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L NL + L +N ++ I F + L L L++N
Sbjct: 74 -----------------------NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRL--SHFPVRSV 191
+ ++ + L +L + E+ + + F G + ++L N L S +
Sbjct: 111 QLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 192 EPLLKLMMIELHDN 205
+ + KL I + D
Sbjct: 168 QGMKKLSYIRIADT 181
Score = 87.4 bits (217), Expect = 6e-19
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
+ +DL +N +T I F++++ L L L N ISKI GAF + L +L +S+++
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L+ + + K+L+ ++++ N ++ L +++++EL NP
Sbjct: 112 LKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 127 bits (321), Expect = 3e-31
Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 33/226 (14%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSDNL 110
+ LD+S N + + GL L+ L ++ + L NLI +D+S
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ F + L L +A N + F + L LD+S+ +LE +SP AF
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKL-------------------------MMIELHD 204
SL+ + ++ N + L L + L
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 205 NPWVCDCNMRSIKMWLADKKNVPVQPA---CTGPERLSGKVFSDLH 247
N + C C +S W+ D++ + V+ C P G L+
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 598
Score = 115 bits (290), Expect = 3e-27
Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 8/187 (4%)
Query: 21 CICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQK 79
C+ +C + IP+ P S T+ LD+S N L+ L +F LQ
Sbjct: 3 CVEVVPNIT--YQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFF--SFPELQV 56
Query: 80 LFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
L L+RC I I+ GA L++L + L+ N + S+ F + L+ L ++ +E
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 140 KGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
+ L +L+++ + ++ PE F+ +LE + L+ N++ + L ++
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 199 MIELHDN 205
++ L +
Sbjct: 177 LLNLSLD 183
Score = 91.6 bits (228), Expect = 1e-19
Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 22/175 (12%)
Query: 52 QVLDMSGNNLQILPKEAFRR-----------------AGLLNLQKLFLARCHIGQID--S 92
Q L++ P + L +L+ L L+R + S
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVK 151
+ G T+L +DLS N + ++ S F + L L+ + + + E F + L+
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
LD+S + F G SLE +K+ GN +F L L ++L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 88.2 bits (219), Expect = 2e-18
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG-ALDGLTNLIEIDLSDNL 110
Q L NL L L L++L +A I LTNL +DLS N
Sbjct: 103 QKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 111 LTSIPSLTFQSVRFLR----DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE-HISPE 165
+ SI + + + L+L+ NP++ I+ GAF+ + L KL + + ++
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKT 219
Query: 166 AFTGAKSLESIKL------NGNRLSHFPVRSVEPLLKLMMIELHDN 205
G LE +L N L F ++E L L + E
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Score = 83.9 bits (208), Expect = 4e-17
Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 27/176 (15%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL---------------- 95
+ ++ + ++ Q L L C GQ + L
Sbjct: 285 SSFSLVSVTIERVKDFSY----NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340
Query: 96 ---DGLTNLIEIDLSDNLLT--SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV 150
L +L +DLS N L+ S + L+ L+L+ N + + F + L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399
Query: 151 KLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
LD S L+ +S F ++L + ++ L L ++++ N
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Score = 72.8 bits (179), Expect = 1e-13
Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 11/157 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRR-AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
+ + L + L N+ L I ++ + ++L +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCK 315
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL--EHISPEAFT 168
P+L +S++ L + + +P L LD+S + L + ++
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 169 GAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
G SL+ + L+ N + + L +L ++ +
Sbjct: 371 GTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHS 406
Score = 42.7 bits (101), Expect = 3e-04
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 28/109 (25%)
Query: 98 LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES 157
+ N+ + IP NL + LD+S +
Sbjct: 7 VPNIT-YQCMELNFYKIPD------------NLPFS---------------TKNLDLSFN 38
Query: 158 RLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L H+ +F L+ + L+ + + + L L + L NP
Sbjct: 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 122 bits (307), Expect = 4e-29
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 34 CRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIG-QIDS 92
R L +P+ + T+ L +S N ++ + +F L LQ L L + ID
Sbjct: 11 YRFCNLTQVPQVLNT--TERLLLSFNYIRTVTASSF--PFLEQLQLLELGSQYTPLTIDK 66
Query: 93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK--IEKGAFQFVPGLV 150
A L NL +DL + + + FQ + L +L L +S ++ G F+ + L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 151 KLDMSESRLEHISPE-AFTGAKSLESIKLNGNRLSHFPVRSVEPL--LKLMMIELHDNP 206
+LD+S++++ + +F SL+SI + N++ +EPL L L N
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Score = 114 bits (288), Expect = 7e-27
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 12/178 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRA----------GLLNLQKLFLARCHIGQIDSGALDGL--T 99
++LD+SGN + F A ++ +I D GL +
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266
Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
++ +DLS + S+ S F++++ L+ LNLA N I+KI AF + L L++S + L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 160 EHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIK 217
+ F G + I L N ++ ++ + L KL ++L DN + SI
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384
Score = 113 bits (285), Expect = 2e-26
Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 39/234 (16%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI-----GQIDSGALDGLTNLIEIDL 106
Q+L ++ N + + +L++LFL + ++ +GL++L + L
Sbjct: 429 QILILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 107 SDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEA 166
+ N L S+P F + LR L+L N ++ +
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP---------------------- 525
Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNV 226
+LE + ++ N+L + L ++++ N ++C+C + + WL
Sbjct: 526 ----ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVT 578
Query: 227 ----PVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVC 276
P C P+ SG L + + ++ + V + T+
Sbjct: 579 IAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFL 632
Score = 113 bits (284), Expect = 3e-26
Identities = 29/158 (18%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+N++ + F +++ L L+ + ++S + L +L ++L+ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
I F + L+ LNL+ N + ++ F +P + +D+ ++ + I + F +
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
L+++ L N L+ + + I L N V
Sbjct: 363 KLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVT 395
Score = 108 bits (272), Expect = 7e-25
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 10/158 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
++ NL +P+ L ++L L+ +I + + + L L ++L
Sbjct: 7 RIAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 112 T-SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH--ISPEAFT 168
+I F+++ LR L+L + I + AFQ + L +L + L + F
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
Query: 169 GAKSLESIKLNGNRLSHFPVRSV-EPLLKLMMIELHDN 205
K+L + L+ N++ + L L I+ N
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Score = 93.7 bits (233), Expect = 4e-20
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 20/174 (11%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTN------LIEID 105
+ +D S N + ++ + L LA + S N L +D
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 106 LSDNLLTSIPSLTFQS------------VRFLRDLNLARNPISKIEKGAFQ--FVPGLVK 151
+S N T + F + + + I ++ F +
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
LD+S + ++ F K L+ + L N+++ + L L ++ L N
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Score = 91.8 bits (228), Expect = 2e-19
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 32/180 (17%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD--- 108
QVL++S N L L F GL + + L + HI I L L +DL D
Sbjct: 317 QVLNLSYNLLGELYSSNFY--GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 109 ----------------NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQF-VPGLVK 151
N L ++P + ++L+ N + ++ F VP L
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQI 430
Query: 152 LDMSESRLEHISPEA-FTGAKSLESIKLNGNRL-----SHFPVRSVEPLLKLMMIELHDN 205
L ++++R S + + SLE + L N L + E L L ++ L+ N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 115 bits (289), Expect = 8e-29
Identities = 45/175 (25%), Positives = 65/175 (37%), Gaps = 28/175 (16%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
LD+S N LQ LP L L L ++ + + GAL GL L E+ L N L
Sbjct: 80 GTLDLSHNQLQSLP-LLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
++P L L+LA N ++++ G + L L + E+ L I F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG--- 193
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNV 226
L LH NPW+C+C + + WL D
Sbjct: 194 ----------------------SHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN 226
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 113 bits (285), Expect = 8e-28
Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 12/196 (6%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
C IC C++ + IP P + L L+++ K AF +G
Sbjct: 2 CHH-RICHCSNRV--FLCQESKVTEIPSDLPRN--AIELRFVLTKLRVIQKGAF--SGFG 54
Query: 76 NLQKLFLARCHIGQ-IDSGALDGLTNLIEIDLSD-NLLTSIPSLTFQSVRFLRDLNLARN 133
+L+K+ +++ + + I++ L L EI + N L I FQ++ L+ L ++
Sbjct: 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114
Query: 134 PISKIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTG-AKSLESIKLNGNRLSHFPVRSV 191
I + V LD+ + + I +F G + + LN N + +
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174
Query: 192 EPLLKLMMIELHDNPW 207
+ +N
Sbjct: 175 NGTQLDELNLSDNNNL 190
Score = 113 bits (285), Expect = 1e-27
Identities = 39/232 (16%), Positives = 81/232 (34%), Gaps = 15/232 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLAR-CHIGQIDSGALDGLT-NLIEIDLSDN 109
Q L +S ++ LP L L + +I I+ + GL+ + + L+ N
Sbjct: 107 QYLLISNTGIKHLPDVHKI--HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
+ I + F + N + ++ F G V LD+S +R+ +
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMW-----LADKK 224
K L + + L P ++E L+ LM L P C + + +K
Sbjct: 225 LKKLRA--RSTYNLKKLP--TLEKLVALMEASL-TYPSHCCAFANWRRQISELHPICNKS 279
Query: 225 NVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVC 276
+ + R ++ + ++ ++ + + + +E V C
Sbjct: 280 ILRQEVDYMTQARGQRSSLAEDNESSYSRGFDM-TYTEFDYDLCNEVVDVTC 330
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 112 bits (281), Expect = 2e-27
Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 13/165 (7%)
Query: 42 IPEAPES-ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTN 100
I E ++ ++ ++ ++L+ N+++L L+ + QI + L T
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
L ++LS N+L +S+ LR L+L N + ++ G P + L + + +
Sbjct: 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNIS 112
Query: 161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+S ++I L N+++ ++ ++L N
Sbjct: 113 RVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Score = 110 bits (278), Expect = 5e-27
Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 35/192 (18%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ LD++ N +Q L +++ L A +I ++ G N+ L++N +
Sbjct: 83 RTLDLNNNYVQELLV-------GPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKI 132
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-----------------------FVPG 148
T + L ++ L+L N I +
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
L LD+S ++L + F A + I L N+L +++ L +L N +
Sbjct: 193 LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH 250
Query: 209 CDCNMRSIKMWL 220
C
Sbjct: 251 CGTLRDFFSKNQ 262
Score = 61.5 bits (150), Expect = 2e-10
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS 172
+I + Q+ + + + + + Q + +LD+S + L IS
Sbjct: 1 AIHEI-KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
LE + L+ N L +E L L ++L++N
Sbjct: 60 LELLNLSSNVLYETL--DLESLSTLRTLDLNNN 90
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 114 bits (288), Expect = 3e-27
Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 12/191 (6%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID--SGALDGLTNLIEIDLSD 108
LD S N L E L L+ L L + ++ + + +L ++D+S
Sbjct: 326 FLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 109 NLLTSI-PSLTFQSVRFLRDLNLARNPISKIEKGAF-QFVPGLVKLDMSESRLEHISPEA 166
N ++ + L LN++ N + F P + LD+ ++++ I +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSN---ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQV 440
Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS-IKMWLADKK- 224
++L+ + + N+L P + L L I LH NPW C C + WL
Sbjct: 441 V-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 499
Query: 225 NVPVQPACTGP 235
C+G
Sbjct: 500 KEQGSAKCSGS 510
Score = 74.9 bits (184), Expect = 2e-14
Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 53 VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT 112
++D S N L +PK+ + L +++ +I ++ + + L+ L + +S N +
Sbjct: 4 LVDRSKNGLIHVPKDLSQ-----KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58
Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI-SPEAFTGAK 171
+ F+ + L L+L+ N + KI + L LD+S + + + + F
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMS 115
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
L+ + L+ L V + L ++ + +
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
Score = 65.3 bits (159), Expect = 2e-11
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+D S N L +P Q LN+++N IS++ + L L +S +R++++
Sbjct: 5 VDRSKNGLIHVPKDLSQKTTI---LNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
F + LE + L+ N+L P + L ++L N +
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDA 104
Score = 59.1 bits (143), Expect = 2e-09
Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 2/133 (1%)
Query: 75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
++ + L + + L L + ++ S ++ + N +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRS--VE 192
+ + + LD S + L E LE++ L N+L +
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371
Query: 193 PLLKLMMIELHDN 205
+ L +++ N
Sbjct: 372 QMKSLQQLDISQN 384
Score = 58.3 bits (141), Expect = 4e-09
Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 10/169 (5%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
+ LD+S N L + +NL+ L L+ + ++ L + LS
Sbjct: 72 EYLDLSHNKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
Query: 111 LTSIPSLTFQSVRFLR-DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
L L + + L L K + Q + +
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD---FNTESLHIVFPTNKEFHFILD 183
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKM 218
L + + + ++ +L NP + + + +I+
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 111 bits (279), Expect = 3e-26
Identities = 44/296 (14%), Positives = 88/296 (29%), Gaps = 40/296 (13%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ LD++ N +Q L +++ L A +I ++ G N+ L++N +
Sbjct: 83 RTLDLNNNYVQELL-------VGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKI 132
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-----------------------FVPG 148
T + L ++ L+L N I +
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
L LD+S ++L + F A + I L N+L +++ L +L N +
Sbjct: 193 LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH 250
Query: 209 CDCNMRSIKMWLADKKNVPVQPA-CTGPERLSGKVFSDLHADDFACKP-EIRMDSRYVEA 266
C + TG V + H + C+ R +
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310
Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E+A + + R + ++ + RK + +
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQ---REIDALKEQYRTVIDQVTLRKQAKI 363
Score = 110 bits (276), Expect = 8e-26
Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
++ ++ ++L+ + N+++L L+ + QI + L T L ++LS N+
Sbjct: 12 YKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
L +S+ LR L+L N + ++ G P + L + + + +S
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISRVSCSRGQ-- 120
Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
++I L N+++ ++ ++L N
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155
Score = 61.4 bits (149), Expect = 4e-10
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS 172
+I + Q+ + + + + + Q + +LD+S + L IS
Sbjct: 1 AIHEI-KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
LE + L+ N L +E L L ++L++N
Sbjct: 60 LELLNLSSNVLYETL--DLESLSTLRTLDLNNN 90
Score = 59.1 bits (143), Expect = 2e-09
Identities = 13/143 (9%), Positives = 38/143 (26%), Gaps = 5/143 (3%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+L G+ + L E +++ + + I ++ L
Sbjct: 316 ALLSGQGSETERLECERE---NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGA 170
S ++ L +++ A + L L R E + +
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431
Query: 171 KSLESIKLNGNRLSHFPVRSVEP 193
++ + ++ + +
Sbjct: 432 NAIRDWDMYQHKETQLAEENARL 454
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 100 bits (252), Expect = 9e-25
Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 58/239 (24%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEA-FRRAGL 74
CP+ C C+ ++C + L IP P T L ++ N L + + F R L
Sbjct: 2 CPAMCHCE----GTTVDCTGRGLKEIPRDIPLH--TTELLLNDNELGRISSDGLFGR--L 53
Query: 75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
+L KL L R + I+ A +G +++ E+ L +N + I + F + L+ LNL N
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
IS + G+F L+
Sbjct: 114 ISCVMPGSF-------------------------------------EHLN---------- 126
Query: 195 LKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
L + L NP+ C+C++ WL K C P ++ DL +F C
Sbjct: 127 -SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKC 184
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 98.9 bits (247), Expect = 5e-24
Identities = 54/241 (22%), Positives = 88/241 (36%), Gaps = 58/241 (24%)
Query: 15 SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
S CP+ C C + C +K L +P+ P L + GN ++P
Sbjct: 2 SRCPTECTC---LDTV-VRCSNKGLKVLPKGIPRD--VTELYLDGNQFTLVP-------- 47
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L +L IDLS+N ++++ + +F ++ L L L+ N
Sbjct: 48 -------------------KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
+ I F L KSL + L+GN +S P +
Sbjct: 89 RLRCIPPRTFD------GL------------------KSLRLLSLHGNDISVVPEGAFND 124
Query: 194 LLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
L L + + NP CDCNM+ + W+ + P C GP ++ K+ + F C
Sbjct: 125 LSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTC 184
Query: 254 K 254
Sbjct: 185 A 185
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 104 bits (262), Expect = 1e-23
Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 20/195 (10%)
Query: 39 LITIPEAPESELT--QVLDMSGNNLQILPKEAFRR-----AGLLNLQKLFLARCHIGQI- 90
+ P + + + +S N + +P+ + + L + L + +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744
Query: 91 DSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLAR------NPISKIEKGAFQ 144
D L L +D+S N +S P+ S + L+ + N I +
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ-LKAFGIRHQRDAEGNRILRQWPTGIT 803
Query: 145 FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH- 203
P L++L + + + + + L + + N V SV P ++ M L
Sbjct: 804 TCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860
Query: 204 -DNPWVCDCNMRSIK 217
+ C+ I+
Sbjct: 861 DKTQDIRGCDALGIE 875
Score = 99.2 bits (247), Expect = 7e-22
Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 15/167 (8%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL-----TNLIEIDL 106
+ L S N L+ +P + + + + + IG + N + L
Sbjct: 622 EGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680
Query: 107 SDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG-------LVKLDMSESRL 159
S N + P+ F + + + L+ N ++ I + + + G L +D+ ++L
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Query: 160 EHISPE-AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+S + T L ++ ++ N S FP +L +
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQ 786
Score = 98.8 bits (246), Expect = 1e-21
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q+ M NNL+ P A ++ L L + +++ L ++ L N +
Sbjct: 551 QIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQI 607
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHISPEAFTG- 169
IP + L + N + I + V + +D S +++
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 170 ----AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ ++ L+ N + FP + I L +N
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Score = 81.8 bits (202), Expect = 3e-16
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 21/165 (12%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD-NL 110
Q++ + + ++ + + + + L +L +++L +
Sbjct: 451 QIIYFANSPFTYDNIA-------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV---------PGLVKLDMSESRLEH 161
+T +P + L+ LN+A N + + P + M + LE
Sbjct: 504 MTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
Query: 162 ISPEA-FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
A L + N++ H + +KL ++L N
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN 605
Score = 58.7 bits (142), Expect = 4e-09
Identities = 14/161 (8%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L ++G + +A + L L+ L D + + +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQ--LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 112 T-SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS------P 164
+ + L +L ++ I++ + + + ++ + ++++ +++
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTNRITFIS 441
Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+A L+ I + ++ + + ++N
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482
Score = 56.8 bits (137), Expect = 1e-08
Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+VL ++ + + ++ + R + LD L DL + +
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM-HYKKMFLDYDQRLNLSDLLQDAI 408
Query: 112 TSIPSLTF---QSVRFLRDLNLAR--NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEA 166
P + S L+D + N I+ I K A Q + L + + S + +
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAV 467
Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
E + + S L L +EL++
Sbjct: 468 D-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501
Score = 53.0 bits (127), Expect = 2e-07
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 3/122 (2%)
Query: 85 CHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ 144
G LD + + L+ + L+ L+ + + +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 145 FVPGLVKLDMSESRLE-HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
+ + R+ H + L L + ++ P ++P+ K I L
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLK 426
Query: 204 DN 205
D
Sbjct: 427 DT 428
Score = 53.0 bits (127), Expect = 3e-07
Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 9/137 (6%)
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
+ L LA A+ LT L + + T L ++ I
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 136 SK-IEKGAFQFVPGLVKLDMSESRLEH------ISPEAFTGAKSLESIKLNGNRLSHFPV 188
+K + L D+ + + I ++ K + I NR++
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFIS- 441
Query: 189 RSVEPLLKLMMIELHDN 205
++++ L KL +I ++
Sbjct: 442 KAIQRLTKLQIIYFANS 458
Score = 33.7 bits (77), Expect = 0.19
Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI 162
+ ++ P + + + L+LA A + L L
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 163 SPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
+ + + +R+ H+ ++ +L + +L +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 95.1 bits (237), Expect = 6e-22
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 9/200 (4%)
Query: 30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
+ + + ++ + L + GN L + A + L NL L L +
Sbjct: 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKE--LTNLTYLILTGNQLQS 99
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
+ +G D LTNL E+ L +N L S+P F + L LNLA N + + KG F + L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159
Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
+LD+S ++L+ + F L+ ++L N+L P + L L I LHDNPW C
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219
Query: 210 DCNMRSI---KMWLADKKNV 226
C I W+ V
Sbjct: 220 TC--PGIRYLSEWINKHSGV 237
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 97.2 bits (242), Expect = 2e-21
Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 12/210 (5%)
Query: 1 MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGN 59
+V F + S + ++ ++ L +P+ P T+ L +S N
Sbjct: 6 KPIVGSFHFVCALALIVGSMTPFSNELESM-VDYSNRNLTHVPKDLPPR--TKALSLSQN 62
Query: 60 NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTF 119
++ L L L+ L L+ I +D +L +D+S N L +I
Sbjct: 63 SISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM 120
Query: 120 QSVRFLRDLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK-SLESIK 177
S LR L+L+ N + F + L L +S ++ + S +
Sbjct: 121 AS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177
Query: 178 LNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
L + S+ + ++ L +P
Sbjct: 178 LVSYHIKGGETESL-QIPNTTVLHLVFHPN 206
Score = 91.9 bits (228), Expect = 1e-19
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 12/167 (7%)
Query: 51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
L+ + N + + L LQ L L R + A N+ ++ D
Sbjct: 355 FTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVA-LMTKNMSSLETLDVS 411
Query: 111 LTSIPSLTF----QSVRFLRDLNLARNPISKIEKGAFQ-FVPGLVKLDMSESRLEHISPE 165
L S+ S + + LNL+ N + F+ P + LD+ +R+ I P+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFRCLPPKVKVLDLHNNRIMSI-PK 467
Query: 166 AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN 212
T ++L+ + + N+L P + L L I LHDNPW C C
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 63.4 bits (154), Expect = 1e-10
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 103 EIDLSDNLLTSIPS-LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
+D S+ LT +P L + + L+L++N IS++ F+ L L +S +R+
Sbjct: 35 MVDYSNRNLTHVPKDLPPR----TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
+ F + LE + ++ NRL + P+ L ++L N +
Sbjct: 91 LDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDV 135
Score = 60.3 bits (146), Expect = 1e-09
Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 4/161 (2%)
Query: 30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
Q +E K + + + + L++ + L+ L +
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316
Query: 90 I---DSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV 146
+ LS + I + S LN +N + +
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376
Query: 147 PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
L L + + L++ A K++ S++ L+
Sbjct: 377 KRLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLN 416
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 95.5 bits (238), Expect = 9e-21
Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 21/185 (11%)
Query: 39 LITIPEAPE-SELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL 95
L T P ++ +L+ N L+ AF + L L LA I +I +
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAF--GSEIKLASLNLAYNQITEIPANFC 373
Query: 96 DGLTNLIEIDLSDNLLTSIPSLTF-QSVRFLRDLNLARNPISKIEKGAFQFVPG------ 148
+ + + N L IP++ +SV + ++ + N I ++ F +
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433
Query: 149 -LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP-------LLKLMMI 200
+ +++S +++ E F+ L SI L GN L+ P S++ L I
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493
Query: 201 ELHDN 205
+L N
Sbjct: 494 DLRFN 498
Score = 92.0 bits (229), Expect = 1e-19
Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 16/179 (8%)
Query: 52 QVLDMSGNNLQILPKEAFRR-----AGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEID 105
+++ GN L +PK + + L + L + ++ D L L+ ID
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 106 LSDNLLTSIPS-----LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
LS N + P+ T + + N + P L +L + + +
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Query: 161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW--VCDCNMRSIK 217
++ + ++ + + N + V P ++ M L + + C+ IK
Sbjct: 580 KVNEKITP---NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 90.9 bits (226), Expect = 2e-19
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 17/169 (10%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDG-------LTNLIEI 104
+ L + N L+ +P + + + + + IG +D D N+ I
Sbjct: 380 ENLSFAHNKLKYIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG-------LVKLDMSES 157
+LS+N ++ P F + L +NL N +++I K + + L +D+ +
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498
Query: 158 RLEHISPE-AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+L +S + T L I L+ N S FP L + +
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQ 546
Score = 72.4 bits (178), Expect = 2e-13
Identities = 29/183 (15%), Positives = 63/183 (34%), Gaps = 18/183 (9%)
Query: 37 KFLITIPEAPE--SELTQVLDMSGNN-LQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG 93
+ T + +LT +++ L LP L +Q + +A +
Sbjct: 236 QQYKTEDLKWDNLKDLTD-VEVYNCPNLTKLPTFLKA---LPEMQLINVACNRGISGEQL 291
Query: 94 ALDG--------LTNLIEIDLSDNLLTSIP-SLTFQSVRFLRDLNLARNPISKIEKGAFQ 144
D + I + N L + P + Q ++ L L N + AF
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350
Query: 145 FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKLMMIELH 203
L L+++ +++ I + +E++ N+L + P + + + + I+
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410
Query: 204 DNP 206
N
Sbjct: 411 YNE 413
Score = 55.4 bits (134), Expect = 3e-08
Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 17/177 (9%)
Query: 37 KFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
F+ P S+L + ++ + Q K++ R L ++ +I + A+
Sbjct: 148 TFVDYDPREDFSDLIK-DCINSDPQQKSIKKSSRI--TLKDTQIGQLSNNITFVSK-AVM 203
Query: 97 GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE 156
LT L + + ++ + + K + + L +++
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-----LKDLTDVEVYN 258
Query: 157 SRLEHISPEAFTGAKSLESIKLNGNRLSHFPV--------RSVEPLLKLMMIELHDN 205
P ++ I + NR K+ +I + N
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Score = 52.7 bits (127), Expect = 2e-07
Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 13/142 (9%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT---------SIPSLTFQSVRF 124
+ L L A+ LT L + L + I + +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 125 LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS 184
++ + + + F L+K ++ + ++ I N ++
Sbjct: 140 KMRMHYQKTFVDYDPREDF---SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 185 HFPVRSVEPLLKLMMIELHDNP 206
++V L KL + ++P
Sbjct: 197 FVS-KAVMRLTKLRQFYMGNSP 217
Score = 52.0 bits (125), Expect = 4e-07
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 7/95 (7%)
Query: 50 LTQVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD 108
+ D GN P+ +L +L + I +++ N+ +D+ D
Sbjct: 543 IRNQRDAQGNRTLREWPEG-I--TLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKD 596
Query: 109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAF 143
N SI L + I
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631
Score = 50.0 bits (120), Expect = 1e-06
Identities = 12/154 (7%), Positives = 34/154 (22%), Gaps = 21/154 (13%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+VL + + ++ + F G+ + +D DL + +
Sbjct: 108 EVLALGSHGEKV-NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
S P L ++ + + + +A
Sbjct: 167 NSDPQQKSIKKSSRITLK-------------------DTQIGQLSNNITFV-SKAVMRLT 206
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L + + + + +
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240
Score = 45.0 bits (107), Expect = 5e-05
Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 6/127 (4%)
Query: 85 CHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAF- 143
G +L+ + + L + + L L L + E+
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 144 QFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP-----LLKLM 198
+ + + + + H + L + ++ P + LK
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186
Query: 199 MIELHDN 205
I N
Sbjct: 187 QIGQLSN 193
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 87.8 bits (218), Expect = 5e-20
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 36/213 (16%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
CPS C C +EC + ++P ++ T LD+ N+L+ LP F L +
Sbjct: 1 CPSRCSC----SGTTVECYSQGRTSVPTGIPAQ-TTYLDLETNSLKSLPNGVFD--ELTS 53
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L +L+L + + +G + LT+L ++LS N L S+P+ F + L++L L N +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
+ G F + L L + +++L+ + F +RL+
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF-------------DRLT-----------S 149
Query: 197 LMMIELHDNPWVCDCNMRSI---KMWLADKKNV 226
L I LHDNPW C C I W+ V
Sbjct: 150 LQYIWLHDNPWDCTCP--GIRYLSEWINKHSGV 180
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 87.4 bits (217), Expect = 1e-19
Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 39/214 (18%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
CPS C C ++CR K ++P P + Q+L + N + L F
Sbjct: 13 CPSQCSC----SGTTVDCRSKRHASVPAGIPTN--AQILYLHDNQITKLEPGVF------ 60
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
D L NL E+ L N L ++P F S+ L L+L N +
Sbjct: 61 --------------------DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
+ + F + L +L M ++L + P L + L+ N+L P + + L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 196 KLMMIELHDNPWVCDCNMRSI---KMWLADKKNV 226
L L NPW C+C R I + W+AD ++
Sbjct: 160 SLTHAYLFGNPWDCEC--RDIMYLRNWVADHTSI 191
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 89.5 bits (223), Expect = 1e-19
Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 12/155 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
N + + A + L L + I + L L+ L +++ N +
Sbjct: 202 HYFTAYVNQITDIT--PV--ANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQI 255
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ I + + + L+ LN+ N IS I + L L ++ ++L + E G
Sbjct: 256 SDINA--VKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
+L ++ L+ N ++ + L K+ + +
Sbjct: 312 NLTTLFLSQNHITDIR--PLASLSKMDSADFANQV 344
Score = 81.4 bits (202), Expect = 7e-17
Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 33/190 (17%)
Query: 39 LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
++ S +T L ++ + ++ + A L +L L L I I L
Sbjct: 144 NLSDLSPL-SNMTGLNYLTVTESKVKDVT--PI--ANLTDLYSLSLNYNQIEDIS--PLA 196
Query: 97 GLTNLIEIDLSDNLLTSIPSLT--------------------FQSVRFLRDLNLARNPIS 136
LT+L N +T I + ++ L L + N IS
Sbjct: 197 SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS 256
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
I A + + L L++ +++ IS L S+ LN N+L + + + L
Sbjct: 257 DIN--AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312
Query: 197 LMMIELHDNP 206
L + L N
Sbjct: 313 LTTLFLSQNH 322
Score = 78.7 bits (195), Expect = 5e-16
Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 46 PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
P+++L + + ++ + + L ++ KL +A + I ++ LTNL
Sbjct: 17 PDADLAEGIRAVLQKASVTDVVTQE----ELESITKLVVAGEKVASIQ--GIEYLTNLEY 70
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
++L+ N +T I L+ ++ L +L + N I+ I A Q + L +L ++E + IS
Sbjct: 71 LNLNGNQITDISPLS--NLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDIS 126
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
P + S+ L N + + L + + ++
Sbjct: 127 P--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165
Score = 76.0 bits (188), Expect = 4e-15
Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 33/175 (18%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ L+++GN + + + L+ L L++ I I AL LTNL E+ L+++ +
Sbjct: 69 EYLNLNGNQITDIS--PL--SNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNI 122
Query: 112 TSIPSLT---------------------FQSVRFLRDLNLARNPISKIEKGAFQFVPGLV 150
+ I L ++ L L + + + + + L
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLY 180
Query: 151 KLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L ++ +++E ISP SL N+++ V + +L +++ +N
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNN 231
Score = 66.4 bits (163), Expect = 5e-12
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L++ N + + A L L+ L + I I L+ L+ L + L++N L
Sbjct: 246 TWLEIGTNQISDIN--AV--KDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQL 299
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
+ + L L L++N I+ I + + D + ++
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVIK 346
Score = 63.3 bits (155), Expect = 6e-11
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
++L++ N + + L L LFL +G D + GLTNL + LS N +
Sbjct: 268 KMLNVGSNQISDIS--VL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISK 137
T I L S+ + + A I K
Sbjct: 324 TDIRPLA--SLSKMDSADFANQVIKK 347
Score = 39.1 bits (92), Expect = 0.003
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 125 LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS 184
L PI++I + ++ + ++ + + +S+ + + G +++
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 185 HFPVRSVEPLLKLMMIELHDN 205
+E L L + L+ N
Sbjct: 58 SIQ--GIEYLTNLEYLNLNGN 76
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 79.6 bits (197), Expect = 2e-17
Identities = 57/223 (25%), Positives = 78/223 (34%), Gaps = 63/223 (28%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
CPS C C + C K L ++P P S L++ N LQ LP F + L
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSS--ATRLELESNKLQSLPHGVFDK--LT 52
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
L KL L++ I + G D LT L + L +N L S+P+ F + L++L L N +
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
+ G F +RL+
Sbjct: 113 KSVPDGIF-------------------------------------DRLT----------- 124
Query: 196 KLMMIELHDNPWVCDCNMRSI---KMWLADKKN-VPVQPACTG 234
L I LH NPW C C I WL C+G
Sbjct: 125 SLQKIWLHTNPWDCSC--PRIDYLSRWLNKNSQKEQGSAKCSG 165
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 77.2 bits (190), Expect = 3e-17
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I ++ A+ E + C + S P P I+W W +L + + R V
Sbjct: 15 PIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG----TSGRYTVETIS 69
Query: 314 -EYERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQVTYRGVGLPFLG 364
E S+L ++N +D Y C A N G L+ + P G
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 83.4 bits (206), Expect = 6e-17
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 39 LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
L ++P P L + L +S N L LP L KL+ + + +
Sbjct: 173 LTSLPMLPSG-LQE-LSVSDNQLASLPTL------PSELYKLWAYNNRLTSLPAL----P 220
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
+ L E+ +S N LTS+P L + L++L ++ N ++ + GL+ L + ++
Sbjct: 221 SGLKELIVSGNRLTSLPVLPSE----LKELMVSGNRLTSLPML----PSGLLSLSVYRNQ 272
Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L + PE+ S ++ L GN LS ++++ + + P
Sbjct: 273 LTRL-PESLIHLSSETTVNLEGNPLSERTLQALREITSA---PGYSGP 316
Score = 76.9 bits (189), Expect = 8e-15
Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 28/185 (15%)
Query: 23 CKWK--GGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKL 80
W+ + R + + + VL++ + L LP ++ L
Sbjct: 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNA-VLNVGESGLTTLPDCLPA-----HITTL 66
Query: 81 FLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK 140
+ ++ + L +++S N LTS+P L + L + + +
Sbjct: 67 VIPDNNLTSLP----ALPPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPLTHLPAL-- 119
Query: 141 GAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMI 200
GL KL + ++L + P L+ + ++ N+L+ P L KL
Sbjct: 120 -----PSGLCKLWIFGNQLTSL-PVLPP---GLQELSVSDNQLASLPA-LPSELCKL--- 166
Query: 201 ELHDN 205
++N
Sbjct: 167 WAYNN 171
Score = 73.4 bits (180), Expect = 8e-14
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 37/184 (20%)
Query: 39 LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
L ++P P L + L +S N L LP A L KL+ + +
Sbjct: 133 LTSLPVLPPG-LQE-LSVSDNQLASLP------ALPSELCKLWAYNNQLTSLP----MLP 180
Query: 99 TNLIEIDLSDNLLTSIP-------SLTFQSVRF---------LRDLNLARNPISKIEKGA 142
+ L E+ +SDN L S+P L + R L++L ++ N ++ +
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV-- 238
Query: 143 FQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIEL 202
L +L +S +RL + L S+ + N+L+ P S+ L + L
Sbjct: 239 --LPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNL 291
Query: 203 HDNP 206
NP
Sbjct: 292 EGNP 295
Score = 64.5 bits (157), Expect = 5e-11
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 15/176 (8%)
Query: 30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
+ + L ++P P L + L +SGN L LP L++L ++ +
Sbjct: 204 YKLWAYNNRLTSLPALPSG-LKE-LIVSGNRLTSLPVL------PSELKELMVSGNRLTS 255
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
+ + L+ + + N LT +P + + +NL NP+S+ A + +
Sbjct: 256 LP----MLPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSA 310
Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
R + A ++L + L P + M DN
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHL--AAADWLVPAREGEPAPADRWHMFGQEDN 364
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 76.0 bits (187), Expect = 8e-17
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQ 229
+ L GN L+ P ++ L L L NPW CDC + ++ WLA + +
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRD 91
Query: 230 PACTGPERLSGKVFSDLHADDFAC 253
C P L G++ L D+
Sbjct: 92 LRCVAPPALRGRLLPYLAEDELRA 115
Score = 42.1 bits (99), Expect = 7e-05
Identities = 23/95 (24%), Positives = 29/95 (30%), Gaps = 33/95 (34%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEAPE--SELTQVLDMSGNNLQILPKEAFRRAGL 74
CP+ C C ++C + L T P T L ++GNNL LP
Sbjct: 2 CPAPCSCA----GTLVDCGRRGL-TWASLPTAFPVDTTELVLTGNNLTALP--------- 47
Query: 75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
G LD L L L N
Sbjct: 48 -----------------PGLLDALPALRTAHLGAN 65
Score = 35.9 bits (83), Expect = 0.008
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
+ E+ L+ N LT++P ++ LR +L NP
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 78.5 bits (194), Expect = 2e-16
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 46 PESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
+ EL+ Q + +N+Q L NL++L L+ I + L LT L E
Sbjct: 36 SQKELSGVQNFNGDNSNIQSL--AGM--QFFTNLKELHLSHNQISDLS--PLKDLTKLEE 89
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+ ++ N L ++ + L L L N + + + + L L + ++L+ I
Sbjct: 90 LSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV 144
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
LE + L+GN +++ + L K+ I+L
Sbjct: 145 M--LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQK 183
Score = 57.0 bits (138), Expect = 3e-09
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
GL N ++ +L +T + S + + +++ N + I + QF L +L +
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHL 70
Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL--LKLMMIELHDN 205
S +++ +SP LE + +N NRL ++ + L + L +N
Sbjct: 71 SHNQISDLSP--LKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNN 116
Score = 51.2 bits (123), Expect = 3e-07
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L + N L+ ++ L NL+ L + + I L L+ L +DL N +
Sbjct: 109 SRLFLDNNELRDT--DSL--IHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI 162
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEK 140
T+ L ++ + ++L
Sbjct: 163 TNTGGL--TRLKKVNWIDLTGQKCVNEPV 189
Score = 40.8 bits (96), Expect = 7e-04
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
++L + N L+ + L L+ L L I L L + IDL+
Sbjct: 131 EILSIRNNKLKSIVMLG----FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184
Query: 112 TSIPSLTFQSVRF---LRDLNLARNPISKIEKG 141
+ P + ++D + I G
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNG 217
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 80.4 bits (199), Expect = 3e-16
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ L + N + + L NL +L L + I + L LTNL ++DL++N +
Sbjct: 202 ESLIATNNQISDIT--PL--GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI 255
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+++ L+ + L +L L N IS I + L L+++E++LE ISP + K
Sbjct: 256 SNLAPLSGLT--KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP--ISNLK 309
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+L + L N +S V L KL + ++N
Sbjct: 310 NLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNN 341
Score = 79.6 bits (197), Expect = 7e-16
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 16/162 (9%)
Query: 46 PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
++ L + + N+ + L + L R I ID ++ L NL +
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSID--GVEYLNNLTQ 72
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
I+ S+N LT I L ++ L D+ + N I+ I + L L + +++ I
Sbjct: 73 INFSNNQLTDITPLK--NLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID 128
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
P +L ++L+ N +S ++ L L + +
Sbjct: 129 P--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQ 166
Score = 76.9 bits (190), Expect = 5e-15
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L++S N + + + GL +LQ+L D L LT L +D+S N +
Sbjct: 137 NRLELSSNTISDISALS----GLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKV 189
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ I L + L L N IS I + L +L ++ ++L+ I
Sbjct: 190 SDISVL--AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--LASLT 243
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+L + L N++S+ + L KL ++L N
Sbjct: 244 NLTDLDLANNQISNLA--PLSGLTKLTELKLGAN 275
Score = 75.0 bits (185), Expect = 2e-14
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 12/154 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L + N + + AGL L L L + I + L NL + L N +
Sbjct: 268 TELKLGANQISNIS--PL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ I ++ S+ L+ L N +S + + + + L +++ ++P
Sbjct: 322 SDISPVS--SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLT 375
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ + LN ++ PV + ++
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409
Score = 65.8 bits (161), Expect = 1e-11
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 11/136 (8%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L+++ N L+ + + L NL L L +I I + LT L + +N +
Sbjct: 290 TNLELNENQLEDIS--PI--SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKV 343
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ + SL ++ + L+ N IS + + + +L +++ +
Sbjct: 344 SDVSSLA--NLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVS 399
Query: 172 SLESIKLNGNRLSHFP 187
++K N P
Sbjct: 400 IPNTVK-NVTGALIAP 414
Score = 45.0 bits (107), Expect = 5e-05
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 28/116 (24%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q L N + + A L N+ L I + L LT + ++ L+D
Sbjct: 334 QRLFFYNNKVSDVSSLA----NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387
Query: 112 TSIPSLTFQSVR----------------------FLRDLNLARNPISKIEKGAFQF 145
T+ P +V + ++ N S + ++ F
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTF 443
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.9 bits (199), Expect = 7e-16
Identities = 108/612 (17%), Positives = 184/612 (30%), Gaps = 209/612 (34%)
Query: 35 RDKFLITIPEAPES-----ELTQVLDMSGNNL-----QILPKEAFRRAGLLNLQKLFLAR 84
+++F +PE E E T ++ G L + P + + +LNL
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL------- 86
Query: 85 CHIGQIDSGALDGLTNLIEI-DLSDNLLTSIPSLTFQSVRFLRD----LNLARNPISKIE 139
+ + ++ L+G +I L+ LL + ++ +++ +A+ P K
Sbjct: 87 -CLTEFENCYLEG----NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK-- 139
Query: 140 KGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL------NGNRLSHFP-VRS-- 190
S S L F + +L GN +F +R
Sbjct: 140 --------------KSNSAL-------FRAVGE-GNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 191 ------VEPLLKLM---MIELHDNPWVCD------CNMRSIKMWLADKKNVPVQP----- 230
V L+K + EL + N I WL + N P +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN---ILEWLENPSNTPDKDYLLSI 234
Query: 231 ACTGPERLSGKVFSDLHADDF--ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAI-- 286
+ P L G V H + K + E S + AI
Sbjct: 235 PISCP--LIG-VIQLAH---YVVTAK---LLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 287 --SW---YWNGRLLLNNTAFSSY--QRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE 339
SW + + R + F + +SL + ++S E
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAY--------PNTSLPPSILEDS--------LE 329
Query: 340 NRAGIADANFTLQVTYRGVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYP 399
N G+ P L I+ ++ +
Sbjct: 330 NNEGVPS--------------PMLS---ISNLTQEQVQ----------------DYVNKT 356
Query: 400 NSKNPA--QIEV-MANGNAHAVVNKTP-SL------------TPVIETSS--FTERK--- 438
NS PA Q+E+ + NG + VV+ P SL ++ S F+ERK
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 439 --QFPP---PSYHSTEMISPNGQLPNKTLHSVINISNPDL-I--------NDTRKPEGLS 484
+F P P +HS ++ + + + + ++ + D+ I +D R G
Sbjct: 417 SNRFLPVASP-FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 485 PEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTP------------IIDG----VSIG 528
E D ++ W + L F P DG V +
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFG-----PGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 529 GELDDNYPPDYG 540
G LD N DYG
Sbjct: 531 GTLDINPDDDYG 542
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 79.6 bits (196), Expect = 8e-16
Identities = 43/255 (16%), Positives = 80/255 (31%), Gaps = 26/255 (10%)
Query: 39 LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
L T+PE P S L LD+ N L +LP+ L+ + + + +
Sbjct: 112 LSTLPELPAS-LKH-LDVDNNQLTMLPEL------PALLEYINADNNQLTMLP----ELP 159
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV---PGLVKLDMS 155
T+L + + +N LT +P L L L+++ N + + + +
Sbjct: 160 TSLEVLSVRNNQLTFLPELPES----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS 215
E+R+ HI PE +I L N LS S+ + ++
Sbjct: 216 ENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
Query: 216 IKMWLADKKNVPVQPACTGPERLS--GKVFSDLHADDFACKPEIRMDSRYVEAVSSENAT 273
P + + HA+ F+ + D+ S
Sbjct: 275 TLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFRE- 333
Query: 274 VVCRVDSIPPAAISW 288
+V + +
Sbjct: 334 ---QVAAWLEKLSAS 345
Score = 73.1 bits (179), Expect = 8e-14
Identities = 32/171 (18%), Positives = 71/171 (41%), Gaps = 26/171 (15%)
Query: 35 RDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA 94
R++ + + E ++ + L ++ NL LP + L + + + +
Sbjct: 46 RNEAVSLLKECLINQFS-ELQLNRLNLSSLPDNLPP-----QITVLEITQNALISLP--- 96
Query: 95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
+ +L +D DN L+++P L L+ L++ N ++ + + L ++
Sbjct: 97 -ELPASLEYLDACDNRLSTLPELPAS----LKHLDVDNNQLTMLPEL----PALLEYINA 147
Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
++L + PE T SLE + + N+L+ P E L +++ N
Sbjct: 148 DNNQLTML-PELPT---SLEVLSVRNNQLTFLP----ELPESLEALDVSTN 190
Score = 63.5 bits (154), Expect = 9e-11
Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 18/153 (11%)
Query: 54 LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDG-LTNLIEIDLSDNLLT 112
+ N + + F + +K L + + S + + E+ L+ L+
Sbjct: 15 QNSFYNTISGTYADYF--SAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72
Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS 172
S+P + L + +N + + + L LD ++RL + PE S
Sbjct: 73 SLPDNLPPQ---ITVLEITQNALISLPEL----PASLEYLDACDNRLSTL-PELPA---S 121
Query: 173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L+ + ++ N+L+ P E L I +N
Sbjct: 122 LKHLDVDNNQLTMLP----ELPALLEYINADNN 150
Score = 41.5 bits (97), Expect = 6e-04
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLA---RNPISKIEKGAFQFVPGLVKLDMSESR 158
+ + N ++ + F + L RN + K +L ++
Sbjct: 13 LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLN 70
Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFP 187
L + P+ + +++ N L P
Sbjct: 71 LSSL-PDNL--PPQITVLEITQNALISLP 96
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 74.8 bits (184), Expect = 1e-15
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 248 ADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
A+ P I V+A+ E AT +C V+S P ISW N L+ R
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD-----TRY 55
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQVTYR 356
+ E G L + + ++SD G + C A N G ++ LQV +
Sbjct: 56 SIRENG-----QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK 100
Score = 70.5 bits (173), Expect = 3e-14
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
KP+I V+ + A + C P ++SW L N+ RI V+E G
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS------RIAVLESG 153
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF-TLQV 353
SL + N Q+ D+G++ CVA+N G A + L+V
Sbjct: 154 ------SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 73.6 bits (182), Expect = 1e-15
Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 8/155 (5%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L L L L KL + ++ A+ L ++ L
Sbjct: 7 SKLQEIYQELTRLKAAVGE---LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQEL 62
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
T + + + L +++++ + P KL L + A
Sbjct: 63 TRLKA-AVGELPEKSKLQEIYQELTRLKAAVGEL-PEKSKLQEIYQELTEL-KAAVGELP 119
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
++ L+ +V L +
Sbjct: 120 EKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQE 153
Score = 67.5 bits (166), Expect = 2e-13
Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 10/151 (6%)
Query: 39 LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
L + A EL L L L L KL + ++ + +
Sbjct: 16 LTRLKAA-VGELPEKSKLQEIYQELTRLKAAVGE---LPEKSKLQEIYQELTRLKAA-VG 70
Query: 97 GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE 156
L ++ LT + + + L ++++ K A +P KL
Sbjct: 71 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTEL-KAAVGELPEKSKLQEIY 128
Query: 157 SRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
L + A + L+
Sbjct: 129 QELTQL-KAAVGELPDQSKQQQIYQELTDLK 158
Score = 59.8 bits (146), Expect = 9e-11
Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 4/108 (3%)
Query: 98 LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES 157
L ++ LT + + + L ++++ K A +P KL
Sbjct: 3 LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQ 60
Query: 158 RLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L + A ++ L+ +V L + ++
Sbjct: 61 ELTRL-KAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQ 106
Score = 45.9 bits (110), Expect = 6e-06
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L L L L KL + Q+ A+ L + + L
Sbjct: 99 SKLQEIYQELTELKAAV---GELPEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQEL 154
Query: 112 TSIPS 116
T + +
Sbjct: 155 TDLKT 159
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 77.5 bits (191), Expect = 2e-15
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P+ + + + C V S PPA+I W + +L + + G
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVL----PAKNTTNLKTYSTG 155
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
RK L + ++D GR+ C A N G + L +
Sbjct: 156 ---RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
Score = 68.7 bits (168), Expect = 1e-12
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR-LLLNNTAFSSYQRIFVIEQ 312
+P I + + + T+VC + P I+W S RI V Q
Sbjct: 1 QPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
SSL + + + SDSGR+ C A +R G + L + Y
Sbjct: 60 H---GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA 100
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 70.9 bits (174), Expect = 2e-15
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I A + C+ P ISW G R + EQG
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP-----RATIQEQG 62
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+L + N + SD+G + CVA + +G + L VT
Sbjct: 63 ------TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 70.8 bits (174), Expect = 2e-15
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
KP+I SR ++ + + P +W + V +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA------PELLVDAKS 55
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+S+ +A+ +DSG + +N G +A F + V
Sbjct: 56 S---TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.5 bits (173), Expect = 4e-15
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
S + + V P A+ W++NG +L S Y + E L L
Sbjct: 12 SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNE----SKYICTKIHVTNHTEYHGCLQLD 67
Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
N ++G + +A+N G + +
Sbjct: 68 NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 70.4 bits (173), Expect = 4e-15
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ + +V +P +SWY NGR + ++ ++ V E+G + SL+
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH----KMIVSEKGLH----SLIF 66
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ SD+G + CVA+NRAG A L V
Sbjct: 67 EVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 73.1 bits (179), Expect = 6e-15
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P S A + C PP+ SW+ +G +L A +
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADA-KKTRAFMNSSF 162
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ L+ DSG +YC A+N G A + +
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 61.1 bits (148), Expect = 7e-11
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
K + V+ +E+ + C + W + + TA Y
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWK---FVQGSTTALVCYNSQITAPYA 57
Query: 314 EYERKS--SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ S + ++ D+G + C+ G ++ +T
Sbjct: 58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 69.8 bits (171), Expect = 6e-15
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
+M+ R ++ C P + W NG+ Y+
Sbjct: 10 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-------- 61
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ SL++ + SD G + CV EN G + + L V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 69.6 bits (171), Expect = 6e-15
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P+I + + TV C P ++W GR + + R + +
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHS----QEQGRFHIENTDD 61
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
++L++ + Q+ D G + N G A + +
Sbjct: 62 L---TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 74.4 bits (183), Expect = 7e-15
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P R VE + + + C + PP +SW+ + R L + + ++ +
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK------KYKIMSENF 246
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+S+ + N +D G + C A N G ++ +
Sbjct: 247 ---LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 71.3 bits (175), Expect = 8e-14
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + V+ E+ T C V P I+W + R + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV------- 57
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
E ++L + + D+G++ C A N AG + L V
Sbjct: 58 --ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Score = 66.7 bits (163), Expect = 3e-12
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
E+ C++ P + WY + + + S ++ FV L + N
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQES---SKFRMSFVESVA------VLEMYNLSVE 165
Query: 330 DSGRFYCVAENRAGIADANFTLQV 353
DSG + C A N AG A ++ +L+V
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKV 189
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 74.3 bits (183), Expect = 8e-15
Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 12/154 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L + N ++ L + L L+ L L I I+ L L L + L +N +
Sbjct: 93 GWLFLDENKVKDL--SSL--KDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKI 146
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
T I L + L L+L N IS I + L L +S++ + + G K
Sbjct: 147 TDITVL--SRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLK 200
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+L+ ++L + P+ L+ ++ D
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234
Score = 71.2 bits (175), Expect = 1e-13
Identities = 28/162 (17%), Positives = 64/162 (39%), Gaps = 16/162 (9%)
Query: 46 PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
+ + ++ ++ + L ++ ++ I + + L N+ +
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ--GIQYLPNVTK 72
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+ L+ N LT I L +++ L L L N + + + + + L L + + + I+
Sbjct: 73 LFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN 128
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
LES+ L N+++ + + L KL + L DN
Sbjct: 129 G--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDN 166
Score = 59.3 bits (144), Expect = 7e-10
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 10/133 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ L + N + + + L L L L I I L GLT L + LS N +
Sbjct: 137 ESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ + +L ++ L L L + + ++ L ++PE +
Sbjct: 191 SDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDG 246
Query: 172 SLESIKLNGNRLS 184
E + +
Sbjct: 247 DYEKPNVKWHLPE 259
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 72.0 bits (176), Expect = 8e-15
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P ++ E A +VC+ +S+PP +WY S R FV
Sbjct: 83 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142
Query: 313 GEYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQVTY 355
+S L + N E+D G++ C + G A TL+V
Sbjct: 143 Q---GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 50.4 bits (120), Expect = 2e-07
Identities = 8/88 (9%), Positives = 17/88 (19%), Gaps = 21/88 (23%)
Query: 270 ENATVVCRVDSIPPAAISWYW--NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
+ C ++ W G +L +
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----------------KTEFKVDS 57
Query: 328 ESDSGRFYCVAENRAGIADANFTLQVTY 355
+ G + CV +Q+
Sbjct: 58 DDQWGEYSCVFLPEPM---GTANIQLHG 82
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 69.7 bits (171), Expect = 8e-15
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+P + + + C+V +P +SW +G+ + S ++ V E G
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP----DSAHKMLVRENG 64
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ SL++ D+G + C+A NRAG + L V
Sbjct: 65 VH----SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 71.7 bits (176), Expect = 1e-14
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 254 KPEIRMD--SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
P I M S A E T CR P AISW+ NG+L+ N ++ +
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN------EKYILKG 149
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ L + N SD G + C A N+AG + LQV
Sbjct: 150 SN-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 63.3 bits (154), Expect = 9e-12
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
E E+A VVCRV S P A+SW ++ + S R ++ +L +
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT----ISDNRFAMLANN------NLQI 61
Query: 324 TNAQESDSGRFYCVAENRAG--IADANFTLQV 353
N +SD G + C A I + + V
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 93
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 71.7 bits (176), Expect = 2e-14
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
A P + + R + NAT+VC+V P + WY G+ ++ + RI +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---GLKYRIQEFK 58
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
G + L++ + + D+ + A N+ G +L+V
Sbjct: 59 GGYH----QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
Score = 70.5 bits (173), Expect = 3e-14
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P+ V A+ E ++ P I+W L+ NN VI
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN------GHYQVIVTR 157
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ S + + D+G + A+NR GI L V
Sbjct: 158 SF--TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 71.8 bits (176), Expect = 2e-14
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P+++ V + C V + P A ISW+ +G+LL S+Y I +
Sbjct: 20 PKLQGPVA-VYTWEGNQVNITCEVFAYPSATISWFRDGQLL----PSSNYSNIKIYNTPS 74
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
S L +T E+D G + C A NR G F L
Sbjct: 75 ---ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 75.5 bits (185), Expect = 2e-14
Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 16/162 (9%)
Query: 46 PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
P+ + ++ ++ + L ++ ++ I + + L N+ +
Sbjct: 16 PDDAFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ--GIQYLPNVTK 69
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+ L+ N LT I LT +++ L L L N I + + + + L L + + + I+
Sbjct: 70 LFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN 125
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
LES+ L N+++ + + L KL + L DN
Sbjct: 126 G--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDN 163
Score = 70.1 bits (171), Expect = 9e-13
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 10/156 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ L + N + + L L+ L+L I I L LT L + L DN +
Sbjct: 112 KSLSLEHNGISDI--NGL--VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 165
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ I L + L++L L++N IS + A + L L++ + +
Sbjct: 166 SDIVPL--AGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLV 221
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
++K L + S + + ++ H +
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257
Score = 40.1 bits (93), Expect = 0.002
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 125 LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS 184
+ + PI +I +K ++ + + S++ I N + +
Sbjct: 1 MGETITVSTPIKQIF--PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 185 HFPVRSVEPLLKLMMIELHDN 205
V+ ++ L + + L+ N
Sbjct: 57 S--VQGIQYLPNVTKLFLNGN 75
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 69.0 bits (169), Expect = 2e-14
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P IR + C P I W +G L+ + RI +E G
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-----RIKQLENG- 62
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
L + A+ D+GR+ C+A +G A + ++V GV
Sbjct: 63 -----VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 75.1 bits (184), Expect = 2e-14
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 254 KPEIR---MDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFV 309
K I M + V EN ++ ++ P P W + R +
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDK----WEDYPKS 365
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ S L LT + ++ G + + N A F + V +
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412
Score = 68.5 bits (167), Expect = 3e-12
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 9/106 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAF---SSYQRIFVI 310
KPEI + N + C P I WY+ +A Q +
Sbjct: 412 KPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS 465
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ + ++ +G C A N G A F
Sbjct: 466 GPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511
Score = 67.4 bits (164), Expect = 5e-12
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + + E TV C + + +W ++S+
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH----GDF 267
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
YER+++L +++A+ +DSG F C A N G A+ TL+V +G
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG 311
Score = 48.1 bits (114), Expect = 6e-06
Identities = 11/111 (9%), Positives = 31/111 (27%), Gaps = 13/111 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
++ + R + + V C + + P R
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGC----QGKPLPKDLRFI------ 163
Query: 315 YERKSSLVLTNAQESDSGRFY-CVAENRAG-IADANFTLQVTYRGVGLPFL 363
+ K+ +++ + + + C + + F L+V +P +
Sbjct: 164 PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVV 214
Score = 47.4 bits (112), Expect = 1e-05
Identities = 8/90 (8%), Positives = 29/90 (32%), Gaps = 21/90 (23%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + + ++C P + W + +++
Sbjct: 36 PPSIHPGKSDLIVRVGDEIRLLCTD----PGFVKWTFEI-----------------LDET 74
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG 343
+++ + A+ +++G++ C ++
Sbjct: 75 NENKQNEWITEKAEATNTGKYTCTNKHGLS 104
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 75.6 bits (185), Expect = 2e-14
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + E+ V C PP I W+ + L+ ++ I + +
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS------GIVLKDGN 719
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+L + ++ D G + C A + G A +
Sbjct: 720 -----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754
Score = 72.5 bits (177), Expect = 2e-13
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 17/106 (16%)
Query: 254 KPEIRMDSR---YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
KP + S VEA E + + PP I WY NG L +N
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN------------ 374
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ L + E D+G + + N + + +
Sbjct: 375 --HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418
Score = 65.5 bits (159), Expect = 3e-11
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNG-RLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+E E + C + I + W + + + S+L
Sbjct: 234 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 293
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
+ SD G + C A + + ++V +
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 328
Score = 63.2 bits (153), Expect = 2e-10
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL-----------NNTAFS 302
PEI + ++ E+ ++ C D ++WY G L +
Sbjct: 550 GPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT 608
Query: 303 SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
++ + + L NA D G + C+A++R Q+T
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT 660
Score = 61.3 bits (148), Expect = 6e-10
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + + + ++ + CR + W W S QR+ V E
Sbjct: 31 LPRLSIQKDILTIKANTTLQITCRGQ--RD--LDWLWPNNQS------GSEQRVEVTECS 80
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ +L + +D+G + C + +Q
Sbjct: 81 DGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDY 121
Score = 59.4 bits (143), Expect = 2e-09
Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 14/115 (12%)
Query: 242 VFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNT 299
V+ + F + Y+ ++ + C R + +
Sbjct: 116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 300 AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
S ++ K + + S +G +C A+ + + V
Sbjct: 176 RIS------------WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
Score = 58.6 bits (141), Expect = 4e-09
Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 28/129 (21%)
Query: 254 KPEIR---MDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNN----------- 298
P+I + S T+ C V +IP P I WYW N
Sbjct: 420 PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNP 479
Query: 299 ---------TAFSSYQRIFVIEQG----EYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
F +I V + E + K+ L + S + C A N+ G
Sbjct: 480 YPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539
Query: 346 DANFTLQVT 354
+ + VT
Sbjct: 540 ERVISFHVT 548
Score = 29.0 bits (64), Expect = 5.1
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ + + CV A + + +L +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL 31
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 68.2 bits (167), Expect = 3e-14
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 243 FSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFS 302
H+ I R + E+A C D P ++W G++L +
Sbjct: 3 HHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS---- 58
Query: 303 SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
R V KS+ +++ Q SD G + V EN G +A FTL +
Sbjct: 59 --ARHQVTTTKY---KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 70.6 bits (173), Expect = 3e-14
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
A E T CR P AISW+ NG+L+ N + + + L +
Sbjct: 14 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE------KYILKGSN-----TELTV 62
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
N SD G + C A N+AG + LQV +
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
Score = 65.2 bits (159), Expect = 2e-12
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNG-RLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+ T+VC + P I+W S RI V Q SSL
Sbjct: 104 ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS---SSLH 160
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ + + SDSGR+ C A +R G + L +
Sbjct: 161 IKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 71.0 bits (174), Expect = 4e-14
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 13/113 (11%)
Query: 248 ADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
A P I + C+ P I W N + +
Sbjct: 104 DKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN------PR 157
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT-LQVTYRGVG 359
+ ++ G L + N++E D G++ CVAEN G + T L V R VG
Sbjct: 158 YSLKDG------FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
Score = 57.5 bits (139), Expect = 1e-09
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
PEI + A+ C PP +I W NG+ + S Q + + +
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV------SGTQSRYTVLEQP 60
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIA-DANFTLQVT 354
+ D + CVAEN G A A+ TL +
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 70.1 bits (172), Expect = 4e-14
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P IR + + V E A + C++ P I WY G+ L+ + ++ + G
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS------RKYKMSSDG 60
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
R +L + ++ D G + C+A N G + + L +
Sbjct: 61 ---RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97
Score = 67.8 bits (166), Expect = 3e-13
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 254 KPEIRMDSRY---VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
P+ + P A++W+ +LL N+ + I +
Sbjct: 100 TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS------ENITIE 153
Query: 311 EQGEYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQVT 354
+ LV+ N Q ++ +G++ N G DA +++
Sbjct: 154 NTE---HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 72.2 bits (177), Expect = 5e-14
Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 39 LITIPEAPESELT--QVLDMSGNNL--QILPKEAFRRAGLLNLQKLFLARCHIGQID--- 91
+ LD+S N + A LQ L L +
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220
Query: 92 SGALDGLTNLIEIDLSDNLLTSIP-SLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV 150
S L +DLS N L + + L LNL+ + ++ KG L
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLS 277
Query: 151 KLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
LD+S +RL+ + ++ L GN
Sbjct: 278 VLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD 310
Score = 67.6 bits (165), Expect = 2e-12
Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 10/146 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLL--NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
+L++ + L L+ L +A+ H + L +DLSDN
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183
Query: 110 LLTSIPSLTFQSVRF----LRDLNLARNPISKIEKGAFQFV---PGLVKLDMSESRLEHI 162
L L+ L L + L LD+S + L
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243
Query: 163 -SPEAFTGAKSLESIKLNGNRLSHFP 187
+ L S+ L+ L P
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVP 269
Score = 64.1 bits (156), Expect = 3e-11
Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 15/163 (9%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI----GQIDSGALDGLTNLIEIDLS 107
+VL ++ + E R L L L+ G I + L + L
Sbjct: 152 KVLSIAQAHSLNFSCEQVRV--FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209
Query: 108 DNLLTSIPSLTFQSVRF---LRDLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHIS 163
+ + + + L+ L+L+ N + + + L L++S + L+ +
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L + L+ NRL P S + L ++ + L NP
Sbjct: 270 KGLPA---KLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNP 307
Score = 56.1 bits (135), Expect = 9e-09
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
Q LD+S N+L+ L L L+ + Q+ G L +DLS N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRL 286
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIE 139
PS + + +L+L NP E
Sbjct: 287 DRNPS--PDELPQVGNLSLKGNPFLDSE 312
Score = 38.7 bits (90), Expect = 0.003
Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 26/196 (13%)
Query: 17 CPSTCICKWKGGK-QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLL 75
+C C + K W + E + + + + + L
Sbjct: 9 DEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL 68
Query: 76 NLQKLFLARCHI---GQIDSGALDGLTNLIEIDLSDNLLT--SIPSLTFQSVRFLRDLNL 130
+L++L + I + + G++ L E+ L + +T + P L + L LNL
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRS 190
+ + + L L+ + + +F
Sbjct: 129 RNVSWATRDAWLAELQQWL--------------------KPGLKVLSIAQAHSLNFSCEQ 168
Query: 191 VEPLLKLMMIELHDNP 206
V L ++L DNP
Sbjct: 169 VRVFPALSTLDLSDNP 184
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 72.0 bits (177), Expect = 5e-14
Identities = 30/162 (18%), Positives = 71/162 (43%), Gaps = 16/162 (9%)
Query: 46 PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
P+ L + +N+ +A L + L + I+ + L NLI
Sbjct: 14 PDPALANAIKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVTTIE--GVQYLNNLIG 67
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
++L DN +T + L ++ + +L L+ NP+ + A + + LD++ +++ ++
Sbjct: 68 LELKDNQITDLAPLK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVT 123
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
P G +L+ + L+ N++++ + L L + + +
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNA 161
Score = 70.9 bits (174), Expect = 1e-13
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ LD++ + + AGL NLQ L+L I I L GLTNL + + + +
Sbjct: 110 KTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQV 163
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
+ + L ++ L L N IS I +P L+++ + +++ +SP
Sbjct: 164 SDLTPL--ANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTS 217
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+L + L +++ PV L+ +++
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 70.2 bits (172), Expect = 5e-14
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + + AT++C P I+W+ + + + +++ G
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG- 167
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
+L + ++ESD G++ CVA N AG A L V
Sbjct: 168 -----ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 61.0 bits (148), Expect = 8e-11
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P VS A+ +C+ P I W G+ + N R VIE
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-------RFEVIEFD 58
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + D + CVA N G + L V
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 72.3 bits (178), Expect = 5e-14
Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 14/174 (8%)
Query: 41 TIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTN 100
+ S Q+ +G L+ A L L + Q L++
Sbjct: 48 SAWRQANSNNPQIETRTGRALKATADL-LEDATQPGRVALELRSVPLPQFPD-QAFRLSH 105
Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE-SRL 159
L + + L +P T Q L L LARNP+ + + + L +L + L
Sbjct: 106 LQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPEL 163
Query: 160 EHI--------SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ + G +L+S++L + P S+ L L +++ ++
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNS 216
Score = 60.3 bits (147), Expect = 4e-10
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 17/165 (10%)
Query: 52 QVLDMSGNN-LQILPKE------AFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEI 104
+ L + L LP+ + GL+NLQ L L I + + + L NL +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSL 211
Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK--GAFQFVPGLVKLDMSE-SRLEH 161
+ ++ L+++ + L +L+L + + F L +L + + S L
Sbjct: 212 KIRNSPLSALGP-AIHHLPKLEELDLRGC--TALRNYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 162 ISPEAFTGAKSLESIKLNGN-RLSHFPVRSVEPLLKLMMIELHDN 205
+ P LE + L G LS P + L +I + +
Sbjct: 269 L-PLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPH 311
Score = 33.8 bits (78), Expect = 0.16
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 52 QVLDMSG-NNLQILPKEAFRRAGLLNLQKLFLARCH--------IGQIDSGALDGLTNLI 102
+ L + +NL LP + R L L+KL L C I Q L
Sbjct: 256 KRLILKDCSNLLTLPLDIHR---LTQLEKLDLRGCVNLSRLPSLIAQ--------LPANC 304
Query: 103 EIDLSDNLLTSIPS 116
I + +L +
Sbjct: 305 IILVPPHLQAQLDQ 318
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 71.8 bits (176), Expect = 5e-14
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVV--CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
P ++ V A ++ +V C D P +SW +G + N ++ +
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE--EDDEKHIFSD 251
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
S L + N ++D + C+AEN+AG DA+ L+V +
Sbjct: 252 DS-----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 65.7 bits (160), Expect = 7e-12
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
K + E E+A +VC V S P I W GR ++ R V+
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI----LKKDVRFIVLSNN 155
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQV 353
L + +++D G + C A I + + V
Sbjct: 156 ------YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 56.0 bits (135), Expect = 9e-09
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWY-WNGRLLLNNTAFSSYQRIFVIEQ 312
++ + E E+ +C+V ISW+ NG L N QRI V+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWN 57
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQV 353
+ S+L + NA D+G + CV G ++A +++
Sbjct: 58 DD--DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 74.2 bits (182), Expect = 6e-14
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQ 305
L P IR + + + C P ISW +G+ + N +
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN----NDRY 476
Query: 306 RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
++ + S L +T+ +D G + C+A+++ G+A+ + L V GLP++
Sbjct: 477 QVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY----GLPYI 530
Score = 71.9 bits (176), Expect = 3e-13
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P ++ +A V C+ D P ++W +E+G
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG- 773
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL 351
+L + N Q+++ G + C A N G + +
Sbjct: 774 -----TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 66.1 bits (161), Expect = 2e-11
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
++D A C+ P +SW +G+ + ++
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------------- 387
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+S L + + ++ D G + C N A+A+ L++
Sbjct: 388 ----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 424
Score = 63.8 bits (155), Expect = 9e-11
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
S ++C P WY A R+ + +L++
Sbjct: 258 KTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRV-------KQVSGTLII 310
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
+A DSG++ CV N G L VT
Sbjct: 311 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 342
Score = 62.3 bits (151), Expect = 3e-10
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P IR V+ E V C V P +I W + R L N ++ V G
Sbjct: 527 LPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN------RKQKVFPNG 579
Query: 314 EYERKSSLVLTNAQ-ESDSGRFYCVAENRAG-IADANFTLQVTYRGVGLPFL 363
+L++ N + SD + CVA+N+ G A + +QV +PF
Sbjct: 580 ------TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFA 625
Score = 61.9 bits (150), Expect = 4e-10
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 264 VEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
A + T+ C V P I W +G+ + + V +G S L
Sbjct: 629 GPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISED---LGITTSRVGRRG-----SVLT 680
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + S +G F C A N AG L V
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712
Score = 53.4 bits (128), Expect = 2e-07
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
++ +S A + C+ P I W + + + + G+
Sbjct: 49 IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD----VPGLRQISSDGKLVFPPFRAE 104
Query: 324 TNAQESDSGRFYCVAENRAGIADA-NFTLQVTYR 356
QE + + C+A N+ G + + ++
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 138
Score = 50.7 bits (121), Expect = 1e-06
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 11/108 (10%)
Query: 240 GKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSI---PPAAISWYWNGRLLL 296
G + S D + +A + C + S +SW+ +
Sbjct: 124 GSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183
Query: 297 NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS-GRFYCVAENRAG 343
A + V+ G L + D + C ++R
Sbjct: 184 FPGAEYD-GKYLVLPSG------ELHIREVGPEDGYKSYQCRTKHRLT 224
Score = 32.2 bits (73), Expect = 0.63
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 321 LVLTNAQESDSGRFYCVAENRAG 343
+ + N + F VA G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACG 23
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 70.7 bits (173), Expect = 6e-14
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER 317
+M+ R ++ C P + W NG+ V Q
Sbjct: 23 KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE---HRIGGYKVRNQH---- 75
Query: 318 KSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
SL++ + SD G + CV EN G + + L V R P L
Sbjct: 76 -WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPIL 120
Score = 68.0 bits (166), Expect = 4e-13
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY--ERKSSL 321
V + VC+V S I W + + + V++ L
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L N E+D+G + C N G A+ + L V
Sbjct: 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 66.9 bits (163), Expect = 7e-14
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPA---AISWYWNGRLLLNNTAFSSYQRI 307
F +P+ E + T RV + W+ + L++ Q
Sbjct: 7 FVMRPQD------GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
++ L +T+AQ + +G + C + +NF L V
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 72.7 bits (179), Expect = 8e-14
Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 36/192 (18%)
Query: 30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
+++ + L +PE + N+L+ LP L+L+ + + +
Sbjct: 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEE 229
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIP-------SLTFQSVRF---------LRDLNLARN 133
+ L L L I +NLL ++P +L + L L+++ N
Sbjct: 230 LPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
S + + P L L+ S + + + SLE + ++ N+L P
Sbjct: 288 IFSGLS----ELPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELP----AL 335
Query: 194 LLKLMMIELHDN 205
+L + N
Sbjct: 336 PPRLERLIASFN 347
Score = 72.3 bits (178), Expect = 1e-13
Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 35/182 (19%)
Query: 39 LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
+ E P + L L+ S N ++ L +L++L ++ + ++ +
Sbjct: 289 FSGLSELPPN-LYY-LNASSNEIRSLCDL------PPSLEELNVSNNKLIELPAL----P 336
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-------------- 144
L + S N L +P L L+ L++ NP+ +
Sbjct: 337 PRLERLIASFNHLAEVPELPQN----LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392
Query: 145 -FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
L +L + + L S+E +++N R+ + E KL
Sbjct: 393 ELPQNLKQLHVETNPLREFPDIPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448
Query: 204 DN 205
+
Sbjct: 449 HH 450
Score = 72.0 bits (177), Expect = 2e-13
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 26/169 (15%)
Query: 39 LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
L +PE P+S L V + + L LP L+ L ++ + ++ L
Sbjct: 103 LTELPELPQS-LKSLLVDNNNLKALSDLPP---------LLEYLGVSNNQLEKLPE--LQ 150
Query: 97 GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE 156
+ L ID+ +N L +P L L + N + ++ + Q +P L +
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPS----LEFIAAGNNQLEELPE--LQNLPFLTAIYADN 204
Query: 157 SRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ L+ + SLESI N L P ++ L L I +N
Sbjct: 205 NSLKKLPDLPL----SLESIVAGNNILEELP--ELQNLPFLTTIYADNN 247
Score = 69.3 bits (170), Expect = 1e-12
Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 31/162 (19%)
Query: 39 LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
+ ++ + P S L L++S N L LP L++L + H+ ++
Sbjct: 309 IRSLCDLPPS-LE-ELNVSNNKLIELPAL------PPRLERLIASFNHLAEVPEL----P 356
Query: 99 TNLIEIDLSDNLLTSIPSLTFQ---------------SVRFLRDLNLARNPISKIEKGAF 143
NL ++ + N L P + + L+ L++ NP+ +
Sbjct: 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416
Query: 144 QFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
+ L M+ R+ A LE + H
Sbjct: 417 S----VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454
Score = 65.8 bits (161), Expect = 1e-11
Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 39/192 (20%)
Query: 30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
+ + RD +L +PE P+S LT LD+S N L + NL L + I
Sbjct: 260 EALNVRDNYLTDLPELPQS-LTF-LDVSENIFSGLSEL------PPNLYYLNASSNEIRS 311
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
+ D +L E+++S+N L +P+L + L L + N ++++ + L
Sbjct: 312 LC----DLPPSLEELNVSNNKLIELPALPPR----LERLIASFNHLAEVPEL----PQNL 359
Query: 150 VKLDMSESRLEHISPE---------------AFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
+L + + L ++L+ + + N L FP +
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP----DIP 415
Query: 195 LKLMMIELHDNP 206
+ + ++
Sbjct: 416 ESVEDLRMNSER 427
Score = 63.9 bits (156), Expect = 7e-11
Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 30/177 (16%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGL--- 98
P + Q +NL +P EA + + + + A G +
Sbjct: 5 PRNVSNTFLQEPLRHSSNLTEMPVEAEN---VKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 99 ---------TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
E++L++ L+S+P L L L + N ++++ + L
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPPH----LESLVASCNSLTELPEL----PQSL 113
Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
L + + L+ +S LE + ++ N+L P ++ L +I++ +N
Sbjct: 114 KSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNS 164
Score = 62.7 bits (153), Expect = 1e-10
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 18/158 (11%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
SE + + + R +L L + + + +L + S
Sbjct: 44 SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP----ELPPHLESLVAS 99
Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF 167
N LT +P L QS++ L N +S + P L L +S ++LE + PE
Sbjct: 100 CNSLTELPEL-PQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKL-PE-L 149
Query: 168 TGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ L+ I ++ N L P + L I +N
Sbjct: 150 QNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNN 183
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 73.3 bits (180), Expect = 9e-14
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P R VE + + + C + PP +SW+ + R L + + ++ +
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK------KYKIMSEN 437
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+S+ + N +D G + C A N G ++ +
Sbjct: 438 ---FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 72.9 bits (179), Expect = 1e-13
Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + V E + ++ P +++W+ + ++ + I++
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES-----DNIWISYSE 531
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++L + A+ +++G++ C +N AG + TL V
Sbjct: 532 ---NIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 71.4 bits (175), Expect = 3e-13
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P +VEA E T+ C+VD P I+WY L + A+ +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFK-------- 57
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPF 362
+SLV+ SD G + C AEN G ++ L + R + F
Sbjct: 58 -NNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSF 104
Score = 68.7 bits (168), Expect = 2e-12
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P + V CR++ P +SWY +G LL ++ + I
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANL----QTSFIHNV- 156
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
++L + +S G++ C A N G A ++ L ++ V
Sbjct: 157 ----ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV 196
Score = 67.9 bits (166), Expect = 4e-12
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
E+ C++ P + WY + + + S ++ FV E + L + N
Sbjct: 307 EHTRYECKIGGSPEIKVLWYKDETEIQES---SKFRMSFV------ESVAVLEMYNLSVE 357
Query: 330 DSGRFYCVAENRAGIADANFTLQVT 354
DSG + C A N AG A ++ +L+V
Sbjct: 358 DSGDYTCEAHNAAGSASSSTSLKVK 382
Score = 67.1 bits (164), Expect = 6e-12
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQ 305
L + P + V+ E+ T C V P I+W + R +
Sbjct: 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP----GGNY 244
Query: 306 RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ ++E ++L + + D+G++ C A N AG + L V
Sbjct: 245 KMTLVENT-----ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 67.1 bits (164), Expect = 1e-13
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
E + V PP + W NG+ L S + ++GE L+
Sbjct: 16 EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRE----SKIIHVEYYQEGEISE-GCLLFN 70
Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQV 353
++G + +A+N G A+
Sbjct: 71 KPTHYNNGNYTLIAKNPLGTANQTINGHF 99
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 70.0 bits (171), Expect = 1e-13
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+PE RMD + + ++ C P +ISW NGR +
Sbjct: 16 RPE-RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR------ 68
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
++ SLV+ + SD G + CV EN+ G +TL V R P L
Sbjct: 69 --HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 116
Score = 66.1 bits (161), Expect = 3e-12
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK---SS 320
AV + C+V S I W + + + + V++ E
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
L L N E D G + C A N G+A+ F L V
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 68.7 bits (168), Expect = 1e-13
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P+I R ++A + C+ P W + + SS R F+I +
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSS-GRFFIINKE 150
Query: 314 EYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQV 353
+ L + N Q D G + C A N G A + L+V
Sbjct: 151 ---NYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 58.7 bits (142), Expect = 3e-10
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNTAFSSYQRIFVIE 311
+P I + S T+ C + S + YW NG L
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT------------- 49
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ + + DSG ++CV + AN T++V
Sbjct: 50 -RKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEV 89
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 70.5 bits (172), Expect = 1e-13
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ +++ EN T++C V W + + + +
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK----ESGRLVEPVTDFLLDM 236
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
Y +S L + +A+ DSG + C + +T
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 51.2 bits (122), Expect = 3e-07
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
+ C A + W + Q + + G + S L LTN
Sbjct: 16 STFVLTCSGS----APVVWERMSQEPP--------QEMAKAQDGTF--SSVLTLTNLTGL 61
Query: 330 DSGRFYCVAENRAGIADANF-TLQVTYRGVGLPFL 363
D+G ++C + G+ L + + FL
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFL 96
Score = 40.1 bits (93), Expect = 0.001
Identities = 10/99 (10%), Positives = 24/99 (24%), Gaps = 19/99 (19%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
+ ++ T+ CRV + P ++ + + + QR F
Sbjct: 97 PNDAEELFIFLTEITEITIPCRV-TDPQLVVTLHEKKGDVALPVPYDH-QRGFSG----- 149
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + C D++
Sbjct: 150 ------------IFEDRSYICKTTIGDREVDSDAYYVYR 176
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 65.8 bits (161), Expect = 2e-13
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + E+ V C PP I W+ + L+ + V++ G
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-------SGIVLKDG 62
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+L + ++ D G + C A + G A +
Sbjct: 63 N----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 65.9 bits (161), Expect = 2e-13
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 248 ADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
+ D P R V VS A + C V PP + W G+ L + +R+
Sbjct: 7 SGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS------ERL 60
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
G + L+LT A +D+G + C A N AG A A + V
Sbjct: 61 SFPADGA---EHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 65.5 bits (160), Expect = 2e-13
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
++ + + CR+ + I+W +G L + R +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDVQS-INWLRDGVQLAES------NRTRI----- 51
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + ++ +DSG + CV + +G F++ V+
Sbjct: 52 --TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 71.6 bits (175), Expect = 2e-13
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
++ VE S + T+ VD+ + W + L F R
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR-------- 100
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
S+V+ E+ +G + ++ A FT+ +
Sbjct: 101 --GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Score = 65.9 bits (160), Expect = 1e-11
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 254 KPEIRMD--SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
K I S E E R + P +W ++ + E
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC-------------E 370
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
Q + S+ + G + AEN FTL +
Sbjct: 371 QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 54.7 bits (131), Expect = 5e-08
Identities = 10/106 (9%), Positives = 28/106 (26%), Gaps = 7/106 (6%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
+ + E + C+ ++W + L F
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS---TN 283
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
R +++ +D+G + C + + + + +G
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGF 326
Score = 44.3 bits (104), Expect = 7e-05
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ Y + ++ +VC +S+P + W + V+++
Sbjct: 140 TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGE----SCKEESPAVVKKE 194
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
E VL +D C A N G FT+ +
Sbjct: 195 E------KVLHELFGTD---IRCCARNELGRECTRLFTIDL 226
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 71.6 bits (176), Expect = 2e-13
Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 19/154 (12%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L + NN+ L + NL L + +D + LT L ++ N L
Sbjct: 67 TKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL 118
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
T + L LN ARN +++I+ L +LD ++ I+ T
Sbjct: 119 TKLDVSQNPL---LTYLNCARNTLTEIDVSHN---TQLTELDCHLNKK--ITKLDVTPQT 170
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L ++ + N+++ V L + N
Sbjct: 171 QLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201
Score = 69.3 bits (170), Expect = 1e-12
Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 36/174 (20%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L+ NN+ L + L L + + +ID + LT L D S N L
Sbjct: 194 NRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPL 245
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIE-------------------KGAFQFVPGLVKL 152
T + T L L+ + + +I+ + L L
Sbjct: 246 TELDVSTLSK---LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
D + + + + L + LN L+ V KL + +
Sbjct: 303 DCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSH---NTKLKSLSCVNAH 350
Score = 67.8 bits (166), Expect = 4e-12
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 20/162 (12%)
Query: 46 PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
E +L + LD +++ + L L KL +I +D L TNL
Sbjct: 37 SEEQLATLTSLDCHNSSITDMT--GI--EKLTGLTKLICTSNNITTLD---LSQNTNLTY 89
Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
+ N LT++ L LN N ++K++ P L L+ + + L I
Sbjct: 90 LACDSNKLTNLDVTPLTK---LTYLNCDTNKLTKLDVSQN---PLLTYLNCARNTLTEID 143
Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ L + + N+ V P +L ++ N
Sbjct: 144 ---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180
Score = 67.0 bits (164), Expect = 7e-12
Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 19/154 (12%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
L N L L L L L + ++D L ++ + N L
Sbjct: 88 TYLACDSNKLTNLDV-----TPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTL 139
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
T I L +L+ N I K L LD S +++ + + K
Sbjct: 140 TEIDVSHNTQ---LTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELD---VSQNK 191
Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L + + N ++ + ++L ++ N
Sbjct: 192 LLNRLNCDTNNITKLDLNQ---NIQLTFLDCSSN 222
Score = 65.1 bits (159), Expect = 2e-11
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 11/131 (8%)
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
N A + D+ + + L L +D ++ +T + + + L L N I
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLT--GLTKLICTSNNI 76
Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
+ ++ L L ++L ++ T L + + N+L+ V
Sbjct: 77 TTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQ---NP 127
Query: 196 KLMMIELHDNP 206
L + N
Sbjct: 128 LLTYLNCARNT 138
Score = 65.1 bits (159), Expect = 3e-11
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 15/145 (10%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
+ TQ++ + + + L L I ++D L L+ + L+
Sbjct: 272 THNTQLIYFQAEGCRKIKELDV--THNTQLYLLDCQAAGITELD---LSQNPKLVYLYLN 326
Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF 167
+ LT + L+ L+ I + +P L +E + + E
Sbjct: 327 NTELTELDVSHNTK---LKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETL 381
Query: 168 -----TGAKSLESIKLNGNRLSHFP 187
T A S + + GN ++ P
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPMNIEP 406
Score = 63.6 bits (155), Expect = 7e-11
Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 33/190 (17%)
Query: 34 CRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRR-----------------AGLLN 76
C L + + LT L+ + N L + +
Sbjct: 113 CDTNKLTKLDVSQNPLLTY-LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ 171
Query: 77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
L L + I ++D + L ++ N +T + L L+ + N ++
Sbjct: 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLDLNQNIQ---LTFLDCSSNKLT 225
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
+I+ + L D S + L + + L ++ L + +
Sbjct: 226 EID---VTPLTQLTYFDCSVNPLTELDVSTLS---KLTTLHCIQTDLLEIDLTH---NTQ 276
Query: 197 LMMIELHDNP 206
L+ +
Sbjct: 277 LIYFQAEGCR 286
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 66.2 bits (161), Expect = 2e-13
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRI 307
F KP+ E+ T + +V + I W+ + L + A Q
Sbjct: 10 FIEKPQG------GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
E+ + + A+++ +G + C + +F L+V
Sbjct: 64 ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 68.4 bits (167), Expect = 2e-13
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P + A A + C D PP+ +W+ +G ++ N +
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
LV SD+G + C A N G + +++
Sbjct: 167 --NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 59.6 bits (144), Expect = 3e-10
Identities = 7/101 (6%), Positives = 29/101 (28%), Gaps = 1/101 (0%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ V + + C + W ++ +++ ++
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + + + D+G + C+ G + +++
Sbjct: 64 TFLP-TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 68.2 bits (167), Expect = 3e-13
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
L + L L+ +I +I S L G+ NL + L NL+ I +L L +L ++ N
Sbjct: 47 LKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN 103
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLS 184
I+ + + + L L MS +++ + + LE + L GN L
Sbjct: 104 QIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153
Score = 66.6 bits (163), Expect = 8e-13
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 79 KLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
+L I ++D+ L L + LS N + I SL + LR L+L RN I KI
Sbjct: 29 ELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKISSL--SGMENLRILSLGRNLIKKI 85
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKL 197
E L +L +S +++ +S +L + ++ N+++++ + + L KL
Sbjct: 86 E-NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142
Query: 198 MMIELHDNP 206
+ L NP
Sbjct: 143 EDLLLAGNP 151
Score = 52.0 bits (125), Expect = 7e-08
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 24/117 (20%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLN----LQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
++L + N ++ + L L++L+++ I + ++ L NL + +S
Sbjct: 73 RILSLGRNLIKKIE-------NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMS 123
Query: 108 DNLLTSIPSL-TFQSVRFLRDLNLARNPISKIEKGAFQF----------VPGLVKLD 153
+N +T+ + ++ L DL LA NP+ K +P L KLD
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 67.9 bits (166), Expect = 3e-13
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
K + E E+A +VC V S P I W GR ++ R V+
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI----LKKDVRFIVLSNN 155
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L + +++D G + C A +QV
Sbjct: 156 ------YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 61.8 bits (150), Expect = 4e-11
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWY-WNGRLLLNNTAFSSYQRIFVIEQ 312
++ + E E+ +C+V ISW+ NG L N QRI V+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWN 57
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQV 353
+ S+L + NA D+G + CV G ++A +++
Sbjct: 58 DD--DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 70.6 bits (173), Expect = 4e-13
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P + A S + C V P ++W NG +++ + ++
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS------DYFQIVGGS- 365
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+L + +SD G + CVAEN AG A ++ L V
Sbjct: 366 -----NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 69.5 bits (170), Expect = 8e-13
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
A + + A + + C V P I W N + L R+ V+
Sbjct: 118 VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL---NPIPGDSRVVVL 174
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTYR 356
G +L ++ Q DSG + C A N A N +++
Sbjct: 175 PSG------ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD 215
Score = 62.9 bits (153), Expect = 1e-10
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
V A+ ++A + C V PP + +W ++ + + ++ +L++
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK-----KYSLLGGS------NLLI 279
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
+N + DSG + CV + A+ L V
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTV 309
Score = 47.5 bits (113), Expect = 9e-06
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 8/105 (7%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
+ + N + C +S I W +G +L A R +
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLIL----ALGMDDRKQQLPN 76
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQVTY 355
G +++ + + D G + C A I + V
Sbjct: 77 GSL-LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 64.4 bits (157), Expect = 4e-13
Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ ++ + + + CR+ +I+W +G L+ + R +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVES------NRTRI----- 57
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + ++ +DSG + CV + +G F++ V+
Sbjct: 58 --TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 65.8 bits (160), Expect = 4e-13
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAF----SSYQRI 307
+ + + + C P I W++ G+ + + + R+
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
+ S++ + E D+G + C A N +V +
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 67.4 bits (165), Expect = 4e-13
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + + + RV IP + +Y +G + ++ + ++G
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS------LDFQISQEG 156
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ SL++ A DSG + A N G A + L V
Sbjct: 157 DL---YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 65.9 bits (161), Expect = 1e-12
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P + V + AT + P +SW+ +G+++ + + G
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS---TLPGVQISFSDGR 62
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
L + +++SGR+ A N +G A + L V
Sbjct: 63 A----KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 69.4 bits (169), Expect = 4e-13
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + + + TVVC + + W + +
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA--QVKHNSWHRGDF 246
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
YER+ +L +++A+ DSG F C A N G A+ TL+V +G
Sbjct: 247 NYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
Score = 48.2 bits (114), Expect = 4e-06
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 13/112 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWY-WNGRLLLNNTAFSSYQRIFVIEQ 312
++ + + +A V C + + S +G+ L + F
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVP--------- 141
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTYRGVGLPFL 363
+ + + C A+ FTL+V +P +
Sbjct: 142 --NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVV 191
Score = 38.9 bits (90), Expect = 0.003
Identities = 9/90 (10%), Positives = 23/90 (25%), Gaps = 20/90 (22%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + + + ++ C + W +
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVE-------------- 53
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG 343
+K+ + A+ + +G + C N
Sbjct: 54 --NKKNEWIQEKAEATRTGTYTCSNSNGLT 81
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 69.1 bits (169), Expect = 4e-13
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ S A E T CR P AISW+ NG+L+ N ++ +
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN------EKYILKGSN 247
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ L + N SD G + C A N+AG + LQV
Sbjct: 248 -----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 65.2 bits (159), Expect = 8e-12
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
++ + VE E+ C P + + G +++ QR+ V ++G
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST------QRVVVQKEGV 58
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
+S L + NA D+G + C A + G A L++
Sbjct: 59 ---RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 95
Score = 62.5 bits (152), Expect = 7e-11
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
K R E E+A VVCRV S P A+SW ++ + S R ++
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT----ISDNRFAMLANN 153
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQV 353
+L + N +SD G + C A I + + V
Sbjct: 154 ------NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 69.2 bits (169), Expect = 5e-13
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P+I+++ + + E A +VC + G L S +Q +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY------ 240
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
Y++ +L L D+G + CVA N G A QV
Sbjct: 241 YKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 54.2 bits (130), Expect = 3e-08
Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 18/100 (18%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + E T+ C + ++ W S
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPG--------- 50
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
S+L NA ++G + C L V
Sbjct: 51 -----STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
Score = 53.0 bits (127), Expect = 8e-08
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 13/109 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ ++ V V + A + C + D ++S G + F
Sbjct: 90 HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV-----LRKTVYFFSPWR 144
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRA-GIADANFTLQVTYRGVGLP 361
++ A+ DS + C L+V P
Sbjct: 145 ------GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPP 187
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 65.1 bits (159), Expect = 5e-13
Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 247 HADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQR 306
H+ + P + + + ++ + C++ +IPP + W N ++ N +
Sbjct: 8 HSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN---TDRIS 64
Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
++ G +L++ + + D+G + A N AG+ N L VT
Sbjct: 65 LYQDNTGRV----TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 64.7 bits (158), Expect = 5e-13
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P+I + + E+ + +V P +W + + + + + V
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES------EHMKVENSEN 61
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
S L + A++ G + + EN+ G A L V
Sbjct: 62 ---GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 64.7 bits (157), Expect = 5e-13
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSY 304
DDF P+I + A+ + + C S + +++ W L + +Y
Sbjct: 3 FVCDDFPX-PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENY 61
Query: 305 QRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
+ E + L L N + + G + CV N G + + L +
Sbjct: 62 AHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 69.3 bits (169), Expect = 6e-13
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
RMD + + ++ C P +ISW NGR I + Q
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE---HRIGGIKLRHQQ-- 179
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
SLV+ + SD G + CV EN+ G +TL V R P L
Sbjct: 180 ---WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 224
Score = 64.6 bits (157), Expect = 2e-11
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK----S 319
AV + C+V S I W + + + + V++
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L L N D+G + C+A N G + + L V
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 48.8 bits (116), Expect = 3e-06
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ S + + C P W +G L+ + +R+ V
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS------ERVLV---- 58
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L + NA DSG + C + +F+++VT
Sbjct: 59 ---GPQRLQVLNASHEDSGAYSCRQRLTQRVL-CHFSVRVT 95
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 69.0 bits (169), Expect = 6e-13
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
A P + + R + NAT+VC+V P + WY G+ ++ + RI +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---GLKYRIQEFK 58
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
G L++ + + D+ + A N+ G +L+V
Sbjct: 59 GG----YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 64.0 bits (156), Expect = 3e-11
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P+ V A+ E ++ P I+W L+ NN VI
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG------HYQVIVTRS 158
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ S + + D+G + A+NR GI L V
Sbjct: 159 F--TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 63.8 bits (156), Expect = 6e-13
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P+I + +A RV P WY NG + + Y E
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP----EDNV 61
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
LV+ + DS A N AG ++ L V
Sbjct: 62 C----ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 70.1 bits (171), Expect = 7e-13
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
++ VE S + T+ VD+ + W + L F R
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR-------- 100
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
S+V+ E+ +G + ++ A FT+ +
Sbjct: 101 --GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Score = 69.0 bits (168), Expect = 2e-12
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 15/105 (14%)
Query: 254 KPEIRMDS--RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
K I + E E R + P +W ++ + E
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC-------------E 370
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
Q + S+ + G + AEN FTL + +
Sbjct: 371 QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK 415
Score = 61.3 bits (148), Expect = 5e-10
Identities = 13/120 (10%), Positives = 38/120 (31%), Gaps = 9/120 (7%)
Query: 240 GKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNN 298
G+ + L D P+ + +++ E + C+ ++W + L
Sbjct: 215 GRECTRLFTIDLNQTPQTTLPQLFLKV--GEPLWIRCKAVHVNHGFGLTWELENKALEEG 272
Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
++ R +++ +D+G + C + + + + +G
Sbjct: 273 N---YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGF 326
Score = 59.7 bits (144), Expect = 1e-09
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 10/103 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQ 312
KP++ + + C D P + +W + + + +
Sbjct: 415 KPQVL--------AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR 466
Query: 313 GEYER-KSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + SS L ++ C A N G + L
Sbjct: 467 KVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509
Score = 48.9 bits (116), Expect = 3e-06
Identities = 14/104 (13%), Positives = 25/104 (24%), Gaps = 15/104 (14%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ Y + ++ +VC +S+P + W +
Sbjct: 140 TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGE-------------SCKE 185
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADA-NFTLQVTYR 356
E E C A N G FT+ +
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT 229
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 66.3 bits (162), Expect = 7e-13
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
K R E E+A VVCRV S P A+SW ++ + + R ++
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN----RFAMLANN 151
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+L + N +SD G + C A + V
Sbjct: 152 ------NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 65.6 bits (160), Expect = 2e-12
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
++ + VE E+ C P + + G +++ QR+ V ++G
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST------QRVVVQKEGV 56
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQV 353
+S L + NA D+G + C A + G +A L++
Sbjct: 57 ---RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 93
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 70.0 bits (171), Expect = 9e-13
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ + Y N ++ C S PPA SW +G + +
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------------- 425
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L ++N E +SG + C A N A +T
Sbjct: 426 ----QELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Score = 68.1 bits (166), Expect = 4e-12
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 20/100 (20%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ +S N + C S P SW NG +
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT---------------- 603
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L + +++G + C N A + + +T
Sbjct: 604 ----QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 60.4 bits (146), Expect = 1e-09
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 22/103 (21%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ S EN + C S PPA SW+ NG +
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST---------------- 247
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIA--DANFTLQVTY 355
L + N ++SG + C A N T+ V
Sbjct: 248 ----QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA 286
Score = 58.8 bits (142), Expect = 3e-09
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 13/102 (12%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ + C ++ A W+ N + L R+ +
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSL------PVSPRLQLSNGN- 163
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
+L L N +D+ + C +N + L V Y
Sbjct: 164 ----RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY 201
Score = 57.3 bits (138), Expect = 9e-09
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
+ C ++ W+ NG+ L + R+ + +L L N +
Sbjct: 483 DAVAFTCEPEAQNTT-YLWWVNGQSLPVS------PRLQLSNGN-----RTLTLFNVTRN 530
Query: 330 DSGRFYCVAENRAGIADAN-FTLQVTYR 356
D+ + C +N ++ TL V Y
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLDVLYG 558
Score = 55.7 bits (134), Expect = 3e-08
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
++ ++S + ++ SWY R+ N G
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 316 ERK-------SSLVLTNAQESDSGRFYCVAENRAGIAD 346
+SL++ N ++D+G + + +
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE 98
Score = 51.5 bits (123), Expect = 6e-07
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 13/94 (13%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ + C + W+ N + L + R+ + +L L
Sbjct: 299 NPVEDEDAVALTCEPEI-QNTTYLWWVNNQSLPVSP------RLQLSNDN-----RTLTL 346
Query: 324 TNAQESDSGRFYCVAENRAGIADAN-FTLQVTYR 356
+ +D G + C +N + ++ L V Y
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 63.5 bits (155), Expect = 1e-12
Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 250 DFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFV 309
P I + R +N + V S P A + WY NG L ++
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN---- 59
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
G +L + + DSG + V N G A TL VT
Sbjct: 60 -TSGVL----TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 68.4 bits (167), Expect = 1e-12
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ V + + C V PP +SW N + L ++ + E
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKF--------E 274
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
R + + +DSG++ V +N+ G ++FT+ V
Sbjct: 275 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 60.3 bits (146), Expect = 5e-10
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 264 VEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E N + C+V +I I WY + R + + + G +L+
Sbjct: 16 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-------EKHDFKDG----ICTLL 64
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+T + D+G + + ++ G + L
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 95
Score = 58.4 bits (141), Expect = 2e-09
Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 19/110 (17%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSI----------PPAAISWYWNGRLLLNNTAFSS 303
E+ M+ A+S+ + + + I ++W NG + +
Sbjct: 98 FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS----- 152
Query: 304 YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
R+ G + L + +D G++ + L
Sbjct: 153 -DRVKTGVTG---EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 63.1 bits (154), Expect = 1e-12
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
S A + P W +G+ + + + E L +
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG------GKYKLSEDKG---GFFLEI 66
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
SDSG + C +N AG ++ L +
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 65.4 bits (160), Expect = 1e-12
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
CPS C C + + C++ L ++P P Q L ++ N + L F L+
Sbjct: 6 CPSQCSC----DQTLVNCQNIRLASVPAGIPTD--KQRLWLNNNQITKLEPGVFDH--LV 57
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
NLQ+L+ + I +G D LT L ++DL+DN L SIP F +++ L + L NP
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
Score = 45.7 bits (109), Expect = 6e-06
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
T+ + L++N +T + F + L+ L N ++ I G F + L +LD++++
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN 212
L+ I AF + L L I L++NPW C+C
Sbjct: 93 LKSIPRGAF-------------DNLK-----------SLTHIYLYNNPWDCECR 122
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 67.7 bits (165), Expect = 1e-12
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + + + + E A +VC S+ + N L +
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI-------PQQSDFHNN 239
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
Y++ +L L +G + CVA N G + +V
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283
Score = 52.7 bits (126), Expect = 1e-07
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 15/101 (14%)
Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
V ++A + C + D + A +S GR L+ +T
Sbjct: 99 VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHT------NYSFSPWH------GF 146
Query: 322 VLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTYRGVGLP 361
+ A+ S + C A + L+V G P
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPP 187
Score = 49.2 bits (117), Expect = 1e-06
Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 18/100 (18%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + T+ C + ++ W + G
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGN----GSVEWDGPPS-----------PHWTLYSDG 48
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
S L NA ++G + C A L V
Sbjct: 49 SS---SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 63.6 bits (155), Expect = 1e-12
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 13/112 (11%)
Query: 246 LHADDFACKPEIRMDSRYVEAVSS---ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFS 302
+ + A P+IR+ + E +V P + W G L +
Sbjct: 13 VTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS---- 68
Query: 303 SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
R+ V + + + A SDSG + + A ++V
Sbjct: 69 ---RVHVRT---SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 65.8 bits (161), Expect = 1e-12
Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 9/134 (6%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ L ++ + +GL NL++L + + L GLT+L +D+S +
Sbjct: 69 KDLTINNIHATNY--NPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Query: 112 TSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
++ + ++L+ N I+ I + +P L L++ +
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRG--IEDF 180
Query: 171 KSLESIKLNGNRLS 184
L + +
Sbjct: 181 PKLNQLYAFSQTIG 194
Score = 59.6 bits (145), Expect = 2e-10
Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 7/135 (5%)
Query: 72 AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA 131
+ L + I ++ LT + L++ +T + + + ++DL +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDLTGI--EYAHNIKDLTIN 74
Query: 132 RNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV 191
+ + L +L + + +G SL + ++ + + +
Sbjct: 75 NIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 192 EPLLKLMMIELHDNP 206
L K+ I+L N
Sbjct: 133 NTLPKVNSIDLSYNG 147
Score = 56.1 bits (136), Expect = 3e-09
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 48 SELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IGQIDSGALDGLTNLIEI 104
S LT +LD+S + L + + L+ I I L L L +
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKI--NTLPKVNSIDLSYNGAITDIM--PLKTLPELKSL 164
Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
++ + + + + L L I +
Sbjct: 165 NIQFDGVHDYRGI--EDFPKLNQLYAFSQTIGGKK 197
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 66.0 bits (161), Expect = 2e-12
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
+ + R + V E A + C+ P ISW +G L + I
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD------ERITIRG 164
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF-TLQV 353
G L++T ++SD+G++ CV N G ++ L V
Sbjct: 165 G------KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
Score = 61.7 bits (150), Expect = 4e-11
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + E AT+ C+ + P I WY G + + R+ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQVTY 355
+ +V D G + CVA N G + +L+V
Sbjct: 69 LFF--LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI 109
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 68.4 bits (167), Expect = 2e-12
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + + + E+ +VCR + P + W NG L + + +
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQS----APPNPNREVAGD 367
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+++ + Q S + C N G AN + V
Sbjct: 368 ------TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 58.0 bits (140), Expect = 4e-09
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ + + C +P I+WY G L ++ + +L +
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD-------KAKFENFN-----KALRI 279
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
TN E DSG ++C+A N+ G +++V
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISVRV 309
Score = 51.8 bits (124), Expect = 4e-07
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 6/93 (6%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+N + C P + W N R + G
Sbjct: 27 HIVDPRDNILIECEAKGNPAPSFHWTRNSRFF---NIAKDPRVSMRRRSGTLV--IDFRS 81
Query: 324 TNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
E G + C A N+ G A LQV+
Sbjct: 82 GGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
Score = 49.9 bits (119), Expect = 1e-06
Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 13/82 (15%)
Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
V T+ C +P I W + + +R+ G L
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD-----KRVSQGHNG------DLY 174
Query: 323 LTNAQESDS-GRFYCVAENRAG 343
+N D + C A
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFT 196
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 65.7 bits (160), Expect = 2e-12
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVC-RVDSIPPAAISWYWNGRLL--LNNTAFSSYQRIFVI 310
+ + R++ + E A + C IP + W +G L L +F + R+ ++
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF-TLQVTYRGV 358
+ G +L+++N + D G + C+A+N G ++++ L V +
Sbjct: 168 DGG------NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAA 210
Score = 61.0 bits (148), Expect = 8e-11
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + +E AT+ C+V+ P I W+ +G + N + G
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN---EKKSHRVQFKDG 65
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQVTY 355
+ +E D G ++CVA+NR G + +LQ+
Sbjct: 66 A--LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV 106
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 62.3 bits (152), Expect = 3e-12
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
++ + RV P +SW N + + + + + E G L +
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA----EGGLC----RLRI 66
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
A+ D+G + C A N G L+V
Sbjct: 67 LAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 67.2 bits (164), Expect = 3e-12
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P I M + + AT++C P I+W+ + + + +S RI + G
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS---ASNGRIKQLRSG- 164
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGI---ADANFTLQV 353
+L + +++E+D G++ CVA N AG+ + AN ++V
Sbjct: 165 -----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
Score = 63.7 bits (155), Expect = 4e-11
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 15/99 (15%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P + E + N + C P + W L +
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE---------------D 250
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
VL DS + CVA + G+ +A + V
Sbjct: 251 DMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289
Score = 60.6 bits (147), Expect = 4e-10
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + + VS A+ VC+ P ++W G+ + + F G
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ---RFETIEFDESAG 62
Query: 314 EYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQV 353
+ L + + D + CVA+N G + L V
Sbjct: 63 -----AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 64.4 bits (157), Expect = 3e-12
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
++ + + + C V+ + I W +G ++ N I E
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY-------IPVSE 55
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIA-DANFTLQV 353
L L + + SD+GR++C E+ L V
Sbjct: 56 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 95
Score = 59.0 bits (143), Expect = 2e-10
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 20/101 (19%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P ++ + + + + C P P I W+ +
Sbjct: 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------------- 144
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
S VL + S F C A N G+A + T+ +
Sbjct: 145 ----PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 63.2 bits (153), Expect = 3e-12
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 29/128 (22%)
Query: 254 KPEIRMDS-----RYVEAVSSENATVVCRVDSIPPAAISWYWNG---------------- 292
P+I +D + V+ + + P + W
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 293 ------RLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD 346
+ + + +E + S + A++ D G + +N G
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDR--SIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 347 ANFTLQVT 354
N T++V
Sbjct: 131 VNLTVKVI 138
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 62.4 bits (152), Expect = 3e-12
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ T CRV P I W+ +G+ + S + I G SL
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK---SDHYTIQRDLDGTC----SLHT 70
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
T + D G + +A N G L V
Sbjct: 71 TASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 64.9 bits (158), Expect = 4e-12
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ V + + C V PP +SW N + L + E
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF--------E 169
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
R + + +DSG++ V +N+ G ++FT+ V
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 59.1 bits (143), Expect = 4e-10
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 19/100 (19%)
Query: 264 VEAVSSENATVVCRVDSI----------PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
A+S+ + + + I ++W NG + R+ G
Sbjct: 3 SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAI------RYSDRVKTGVTG 56
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
E + L + +D G++ + L
Sbjct: 57 E---QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 62.3 bits (151), Expect = 6e-12
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
AV + + VD P ++ W +NG +L + + E R L L
Sbjct: 11 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFI--FTEFLEPAANETVRHGCLRLN 68
Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQV 353
++G + +A N G A A+
Sbjct: 69 QPTHVNNGNYTLLAANPFGQASASIMAAF 97
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 61.7 bits (149), Expect = 7e-12
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKS 319
S +E E + C + I + W + + + S
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+L + SD G + C A + + ++V
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 67.1 bits (163), Expect = 8e-12
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
+++ L LA + + L+ L + +DLS N L ++P ++R L L + N +
Sbjct: 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL 498
Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFP 187
++ +P L +L + +RL+ + + L + L GN L
Sbjct: 499 ENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
Score = 64.4 bits (156), Expect = 6e-11
Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 16/173 (9%)
Query: 43 PEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKL--------FLARCHIGQIDSGA 94
PE LT +L M L L E L+ + R +S
Sbjct: 379 PENKWCLLTIILLM--RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436
Query: 95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
++ + L+ LT + L + + + L+L+ N + + + L L
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQA 493
Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKLMMIELHDNP 206
S++ LE++ L+ + L NRL ++ + +L+++ L N
Sbjct: 494 SDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544
Score = 62.9 bits (152), Expect = 2e-10
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
LD+S N L+ LP A L L+ L + + +D + L L E+ L +N L
Sbjct: 466 THLDLSHNRLRALPPA---LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL 520
Query: 112 TSIPSL-TFQSVRFLRDLNLARNPISKIE---KGAFQFVPGLVKLD 153
++ S L LNL N + + E + + +P + +
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 64.1 bits (156), Expect = 9e-12
Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 19/104 (18%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
K +I ++ + + + C P W+ N L + T
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 163
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTYR 356
K ++ G ++C N D+ + +
Sbjct: 164 ----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203
Score = 63.4 bits (154), Expect = 2e-11
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 19/102 (18%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+I ++ ++ + + CR P W+ + +
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI------------------P 60
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
S L+ D+G + C N L V
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCD 102
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 63.7 bits (154), Expect = 1e-11
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKS 319
S +E E + C + I + W + + + S
Sbjct: 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 171
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+L + SD G + C A + + ++V
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Score = 49.4 bits (117), Expect = 7e-07
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 16/106 (15%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW---NGRLLLNNTAFSSYQRI 307
F + Y+ ++ + C SI +S R + + S
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRIS----- 59
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ K + + S +G +C A+ + + V
Sbjct: 60 -------WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 98
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 66.9 bits (164), Expect = 1e-11
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 46 PESELT--QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNL 101
S + LD+S NN +P LQ L ++ + G S A+ T L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP--FL--GDCSALQHLDISGNKLSGDF-SRAISTCTEL 249
Query: 102 IEIDLSDNLLT-SIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLDMSESRL 159
+++S N IP L +S L+ L+LA N + +I L LD+S +
Sbjct: 250 KLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 160 EHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
P F LES+ L+ N S P+ ++ + L +++L N
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Score = 66.9 bits (164), Expect = 1e-11
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 13/161 (8%)
Query: 52 QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSDN 109
++L++S N +P + +LQ L LA G+I L +DLS N
Sbjct: 250 KLLNISSNQFVGPIPPLPLK-----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 110 LLT-SIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLDMSESRLE-HISPEA 166
++P F S L L L+ N S ++ + GL LD+S + +
Sbjct: 305 HFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 167 FTGAKSLESIKLNGNRLS-HFPVR-SVEPLLKLMMIELHDN 205
+ SL ++ L+ N S P L + L +N
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Score = 61.8 bits (151), Expect = 4e-10
Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 12/152 (7%)
Query: 41 TIPEAPESELT--QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALD 96
IP+ LD+SGN+ +P L+ L L+ + G++ L
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS---CSLLESLALSSNNFSGELPMDTLL 340
Query: 97 GLTNLIEIDLSDNLLT-SIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFV-PGLVKLD 153
+ L +DLS N + +P L L+L+ N S I Q L +L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 154 MSESRLE-HISPEAFTGAKSLESIKLNGNRLS 184
+ + I P + L S+ L+ N LS
Sbjct: 401 LQNNGFTGKI-PPTLSNCSELVSLHLSFNYLS 431
Score = 61.8 bits (151), Expect = 4e-10
Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 15/173 (8%)
Query: 41 TIPEAPESELTQVLDMSGNNL--QILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDG 97
++ S LD+S N+L + + L+ L ++ +
Sbjct: 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS--CSGLKFLNVSSNTLDFPGKVSGGLK 149
Query: 98 LTNLIEIDLSDNLLT-SIPS--LTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLD 153
L +L +DLS N ++ + + L+ L ++ N IS ++ L LD
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC---VNLEFLD 206
Query: 154 MSESRLEHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
+S + P +L+ + ++GN+LS F R++ +L ++ + N
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSN 257
Score = 60.7 bits (148), Expect = 8e-10
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 21/177 (11%)
Query: 41 TIPEAPESELT--QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQI-DSGAL 95
+P ++ +VLD+S N LP+ +L L L+ + G I +
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 96 DGLTNLIEIDLSDNLLT-SIPSLTFQSVRFLRDLNLARNPISKIEKGA----FQFVPGLV 150
+ L E+ L +N T IP T + L L+L+ N +S G + L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLS----GTIPSSLGSLSKLR 445
Query: 151 KLDMSESRLE-HISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
L + + LE I P+ K+LE++ L+ N L+ P + L I L +N
Sbjct: 446 DLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNN 500
Score = 52.6 bits (127), Expect = 3e-07
Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 52 QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQI-DSGALDGLTNLIEIDLSD 108
+ L +S +++ + +L L L+R + G + +L + L +++S
Sbjct: 80 ESLFLSNSHINGSVSGF----KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135
Query: 109 NLLT-SIPSLTFQSVRFLRDLNLARNPISK---IEKGAFQFVPGLVKLDMSESRLEHISP 164
N L + L L+L+ N IS + L L +S +++
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195
Query: 165 EAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
+ +LE + ++ N S P + L +++ N
Sbjct: 196 --VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGN 233
Score = 47.6 bits (114), Expect = 1e-05
Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 10/157 (6%)
Query: 52 QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSDN 109
+ +S N L +PK R L NL L L+ G I L +LI +DL+ N
Sbjct: 493 NWISLSNNRLTGEIPKWIGR---LENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTN 548
Query: 110 LLT-SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFT 168
L +IP+ N K + + I E
Sbjct: 549 LFNGTIPA-AMFKQSGKIAANFIAGKRYVYIKNDGMK--KECHGAGNLLEFQGIRSEQLN 605
Query: 169 GAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ + + + +M +++ N
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Score = 45.7 bits (109), Expect = 4e-05
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT-SIPSLTFQSVRFLRDLNLARN 133
++L L + S +L LT L + LS++ + S+ F+ L L+L+RN
Sbjct: 55 IDLSSKPL-NVGFSAVSS-SLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRN 110
Query: 134 PISKI--EKGAFQFVPGLVKLDMSESRLE-HISPEAFTGAKSLESIKLNGNRLS---HFP 187
+S + GL L++S + L+ SLE + L+ N +S
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 188 VRSVEPLLKLMMIELHDN 205
+ +L + + N
Sbjct: 171 WVLSDGCGELKHLAISGN 188
Score = 42.6 bits (101), Expect = 3e-04
Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 10/144 (6%)
Query: 46 PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEID 105
P + Q ++ N + + G+ I S L+ L+ +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 106 LSDNLLT-SIPSLTFQSVRFLRDLNLARNPIS-KI--EKGAFQFVPGLVKLDMSESRLE- 160
++ + TF + + L+++ N +S I E G+ L L++ + +
Sbjct: 615 ITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIPKEIGSMP---YLFILNLGHNDISG 670
Query: 161 HISPEAFTGAKSLESIKLNGNRLS 184
I P+ + L + L+ N+L
Sbjct: 671 SI-PDEVGDLRGLNILDLSSNKLD 693
Score = 29.1 bits (66), Expect = 4.9
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 52 QVLDMSGNNL--QILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSD 108
+L++ N++ I P E L L L L+ + G+I A+ LT L EIDLS+
Sbjct: 659 FILNLGHNDISGSI-PDE-V--GDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSN 713
Query: 109 NLLT-SIPS 116
N L+ IP
Sbjct: 714 NNLSGPIPE 722
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 65.7 bits (160), Expect = 1e-11
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+P+ EA + C P A+ W +G+ L + + G
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ-------NRIEVSGG 346
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
L + DSG + CVAEN+ G A+ L V
Sbjct: 347 ------ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 54.5 bits (131), Expect = 4e-08
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
+ + E + E T+ CR + PPA W NG L R + G
Sbjct: 13 HTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTEL----KMGPDSRY-RLVAG-----D 62
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADA-NFTLQVTYRG 357
++ + D+G + CVA N G + +L+ +
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQ 101
Score = 53.7 bits (129), Expect = 8e-08
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 10/96 (10%)
Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
V+ C P + W N + +R G +L
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP---ADGRRFVSQTTG------NLY 161
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
+ + SD G + C A + + + + +
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSL 197
Score = 52.6 bits (126), Expect = 2e-07
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 15/90 (16%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
A++ + T+ C P I W + S L +
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE---------------PLLHI 261
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
N D G + C AEN G + +
Sbjct: 262 QNVDFEDEGTYECEAENIKGRDTYQGRIII 291
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 62.0 bits (151), Expect = 1e-11
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ L L + + L L+KL L+ + + NL ++LS N +
Sbjct: 45 EFLSTINVGLTSI--ANLPK--LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
Query: 112 TSIPSLT-FQSVRFLRDLNLARNPISKIE---KGAFQFVPGLVKLD 153
+ ++ + + L+ L+L ++ + + F+ +P L LD
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
Score = 61.6 bits (150), Expect = 1e-11
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 76 NLQKLFLARCHIGQIDS-GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
++++L L + G D L + + LTSI +L + L+ L L+ N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL--PKLNKLKKLELSDNR 75
Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFP 187
+S + + P L L++S ++++ +S E ++L+S+ L +++
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Score = 50.4 bits (121), Expect = 1e-07
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
S++ + L + + E L+ L + I + L L L +++LS
Sbjct: 17 SDVKE-LVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELS 72
Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
DN ++ + + L LNL+ N I +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104
Score = 37.3 bits (87), Expect = 0.003
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
L+ +R+ K+E +F L L L I L+ ++L+ NR+S
Sbjct: 22 LVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG 78
Query: 186 FPVRSVEPLLKLMMIELHDN 205
E L + L N
Sbjct: 79 GLEVLAEKCPNLTHLNLSGN 98
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 63.0 bits (153), Expect = 1e-11
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+I + + V A+ +N T+ C P I W + + S+
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA-------- 165
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
L + N Q D G + C AEN G + V
Sbjct: 166 -----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 53.7 bits (129), Expect = 2e-08
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 11/92 (11%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
V + ++C P +S+ W N + + +R FV + +L
Sbjct: 18 VRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF----ITMDKRRFVSQTN-----GNL 68
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ N + SD G + C + +
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 65.2 bits (159), Expect = 2e-11
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+P + E+ C+ + P W NG LL RI +
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR------DRIQI---- 344
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ +L +T SD+G + CVAEN+ G+ ++ L V
Sbjct: 345 ---EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 55.2 bits (133), Expect = 3e-08
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 14/95 (14%)
Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWY-WNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
V A + C P I W +G+ +
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG------------- 258
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L + N Q+ D+G + CVAEN G A L
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293
Score = 54.5 bits (131), Expect = 4e-08
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
V + ++C + +W +N + +R E G +L
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDN-----RRFVSQETG------NLY 160
Query: 323 LTNAQESDSGRFYCVAENRAG 343
+ ++SD G + CV N
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVT 181
Score = 51.4 bits (123), Expect = 4e-07
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
+ + + C V P I W NG + + + G
Sbjct: 14 HVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM-----DFRYSVVDG------ 62
Query: 320 SLVLTN-AQESDSGRFYCVAENRAGIADA-NFTLQVTY 355
SL++ N + D+G + C+A N G + LQ Y
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAY 100
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 61.0 bits (148), Expect = 3e-11
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 249 DDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIF 308
+ KP +E V A C+V+ P + W+ + + + F +I
Sbjct: 36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF----QID 91
Query: 309 VIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
E+G SL ++ D ++ C A N G A L V
Sbjct: 92 YDEEGNC----SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 59.3 bits (144), Expect = 3e-11
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P + + ++ + C V P I+W NG+ + + E
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST--------CEA 61
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
G L + +A D G + C+AEN G + + V
Sbjct: 62 GVA----ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 64.5 bits (157), Expect = 3e-11
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ ++ T+ C+V +P + W N + L S R V + S LV+
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-------SGGRATVTD-------SGLVI 364
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ D G + C A N G +QV
Sbjct: 365 KGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 59.2 bits (143), Expect = 2e-09
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P ++ V + + C ++ SW +G+ + ++
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNW----QEHNAALRKDE 61
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
G SLV Q SD G + C AE AG+A + + TY
Sbjct: 62 G------SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTY 99
Score = 58.8 bits (142), Expect = 2e-09
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+P + S+ + A + + + C S P +++ NG+ + N I +
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN-------PEDRITRH 264
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVT 354
L+ D G + C +N G + L V
Sbjct: 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
Score = 50.3 bits (120), Expect = 1e-06
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 240 GKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNN 298
G S + + + + + C + ++ P I+W N
Sbjct: 86 GVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN 145
Query: 299 TAFSSY-QRIFVIEQGEYERKSSLVLTNAQE---SDSGRFYCVAENRAG 343
+ + +RI G +L T + SD ++ C A+N A
Sbjct: 146 ADVTDFDRRITAGPDG------NLYFTIVTKEDVSDIYKYVCTAKNAAV 188
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 63.6 bits (154), Expect = 3e-11
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK---SS 320
+E ++C V W WNG ++ + V R +
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278
Query: 321 LVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
L ++ + + C A+N GI A L
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 62.4 bits (151), Expect = 9e-11
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYE 316
R + + + ++E C ++ I+WY + +T RI ++
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST--EQASRI-------HQ 59
Query: 317 RKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPF 362
K L A+ DSG +YCV N + + + L +
Sbjct: 60 HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCY 105
Score = 50.5 bits (120), Expect = 8e-07
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 20/115 (17%)
Query: 253 CKPEIRMDSRYVEAVSSENATVVC------RVDSIPPAAISWYWNGRLLLNNTAFSSYQR 306
C + + + + + +VC + ++ + WY + + LL +
Sbjct: 104 CYNAQAIFKQKLPV--AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN------I 155
Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLP 361
F + L++ N E G + C A T + + +
Sbjct: 156 HFSGVKD------RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 58.9 bits (143), Expect = 4e-11
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 264 VEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+ VC++++ ++WY+ R L N+ + E G L
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYE-----ITYEDGVA----ILY 61
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ + + D G + C N G + L V
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 62.2 bits (150), Expect = 5e-11
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ V+ + T+ C A ++W + G N +YQ + Q
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTW-YTGPTFFENYETGTYQPLANKNQF 194
Query: 314 EYERKS-------------SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
S +LV+ A+ +D+GR +C G DA+ + +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 43.4 bits (101), Expect = 1e-04
Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 23/110 (20%)
Query: 257 IRMDSRYVEAVSSENATVVCRVD---SIPPAAISWYWNGRLLLNNTAFSSY--------- 304
+R VE + + C P ISW + F
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 305 ---QRIFVIEQGEYE--------RKSSLVLTNAQESDSGRFYCVAENRAG 343
+ G++ +L LT+ D GR++C +
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 57.7 bits (140), Expect = 8e-11
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 18/95 (18%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
K +I ++ + + + C P W+ N L + T
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 48
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN 348
K ++ G ++C N D+
Sbjct: 49 ----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 62.8 bits (152), Expect = 9e-11
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
P ++W+ N R++ + +L L A +
Sbjct: 41 PQVPYWLWASVSPRINLTWHKNDSARTVPG--EEETRMWA-------QDGALWLLPALQE 91
Query: 330 DSGRFYCVAENRAGIADANFTLQV 353
DSG + C N + + L+V
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRV 115
Score = 58.5 bits (141), Expect = 2e-09
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRV---DSIPPAAISWY-WNGRLLLNNTA---FSSYQR 306
P I + + A T+ C+V P + W+ N + + + R
Sbjct: 226 IPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285
Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
E E + L+ D + CV N T++
Sbjct: 286 QEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
Score = 53.9 bits (129), Expect = 6e-08
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 17/107 (15%)
Query: 253 CKPEIRMDSRYVEAVSSENATVVCR-----VDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
+ + S + +VC I WY + LL
Sbjct: 121 AFLPFISYPQILT--LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLL------DKDNEK 172
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
F+ +G + L++ + D+G + CV N T +
Sbjct: 173 FLSVRGT----THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 60.8 bits (147), Expect = 9e-11
Identities = 14/95 (14%), Positives = 32/95 (33%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ ++ C D + + N +R ++E+ K+ +
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
+ Q DSG++ C+ A T++V +
Sbjct: 72 PSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYM 106
Score = 38.5 bits (89), Expect = 0.003
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
D+R +E + + C+ P A +SW ++ A +S+ R +G Y+ S
Sbjct: 109 DTRILEVPGTGEVQLTCQARGYPLAEVSW-----QNVSVPANTSHIRT---PEGLYQVTS 160
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L L + S F C+ N + +
Sbjct: 161 VLRL---KPQPSRNFSCMFWNAHMKELTSAIIDPL 192
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 60.3 bits (146), Expect = 1e-10
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 264 VEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+ T+ C++ P + W +G++L + + + EQ ++ S L
Sbjct: 12 ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLR 71
Query: 323 LTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
+T+ Q SD+G++ C+ + +
Sbjct: 72 ITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103
Score = 54.1 bits (130), Expect = 1e-08
Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 18/102 (17%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P + ++ + C+ P P + W + L
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP------------- 152
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
L + + F C A N G+ T+ V
Sbjct: 153 ---GHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 57.8 bits (140), Expect = 1e-10
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
V+A + +AT+ C V ++WY +G+ L SS ++ V G LV+
Sbjct: 21 VQAEAGASATLSCEVAQ-AQTEVTWYKDGKKL------SSSSKVRVEAVG---CTRRLVV 70
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVG 359
A ++++G + C A +F LQV + G
Sbjct: 71 QQAGQAEAGEYSCEAGG----QQLSFRLQVAGQCFG 102
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 62.6 bits (151), Expect = 1e-10
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 6/100 (6%)
Query: 260 DSRYVEAVSSENATVVCRV----DSIPPAAISWYWNGRLLLNNTAFSSYQ-RIFVIEQGE 314
D E E + C V + W +G+ + T + I +
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291
Query: 315 YERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
R L + D R Y C A + G ++
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 55.3 bits (132), Expect = 2e-08
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 4/88 (4%)
Query: 266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
+ + WYW + + I + K L
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK----EKDVLWFRP 85
Query: 326 AQESDSGRFYCVAENRAGIADANFTLQV 353
+D+G + C+ N + F L+V
Sbjct: 86 TLLNDTGNYTCMLRNTTYCSKVAFPLEV 113
Score = 43.3 bits (101), Expect = 2e-04
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 22/113 (19%)
Query: 253 CKPEIRMDSRYVEAVSSENATVVCR-----VDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
C + + + C S I+WY + N
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF-------NN 171
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVA----ENRAGIADANFTLQVTYR 356
+ E +L A S++G + CV R T++V
Sbjct: 172 VIPEGM------NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS 218
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 59.2 bits (144), Expect = 1e-10
Identities = 50/224 (22%), Positives = 70/224 (31%), Gaps = 86/224 (38%)
Query: 17 CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
CPS C C ++C K L ++P P + TQVL + N + L
Sbjct: 3 CPSQCSC----SGTTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLE---------- 46
Query: 76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
G D LT L +DL +N LT +P+ F + L L+L N +
Sbjct: 47 ----------------PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
I +GAF L KSL I
Sbjct: 91 KSIPRGAF-------------DNL-----------KSLTHI------------------- 107
Query: 196 KLMMIELHDNPWVCDCNMRSI---KMWLADKKNVPVQPACTGPE 236
L +NPW C C I W++ + P+
Sbjct: 108 -----WLLNNPWDCAC--SDILYLSRWISQHPGLVFGYLNLDPD 144
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 60.0 bits (145), Expect = 2e-10
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 5/96 (5%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ + S + TV C V++ P + W + T ++ + + G
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT--AANGGVMKEKDG 161
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF 349
V + + CV +N A +
Sbjct: 162 SLS---VAVDLSLPKPWHLPVTCVGKNDKEEAHGVY 194
Score = 46.9 bits (111), Expect = 5e-06
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 264 VEAVSSENATVVC---RVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE---QGEYE- 316
V A E T+ RV P +SW+ G + + IE +G ++
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 317 ----RKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
LV+T A S G + C + L V
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 101
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 57.4 bits (139), Expect = 2e-10
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
D + +SE + C + +WY +G+ + + + + V G RK
Sbjct: 16 DKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEES------ELLVVKMDG---RKH 65
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L+L A+ DSG F C E + A F + V
Sbjct: 66 RLILPEAKVQDSGEFECRTEGVS----AFFGVTVQ 96
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 60.1 bits (145), Expect = 2e-10
Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 12/102 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
KP + + C P W T + +
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT-----PWLAEMTS 175
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + NA SG + C +NR G L V
Sbjct: 176 P------VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 55.1 bits (132), Expect = 8e-09
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIP----PAAISW---------------YWNGRLLL 296
I + +E E A + C+ P P I W ++G +
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 297 NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+N R+ +S+ +TN Q SD G + C + G+A+ F L V +
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 357 G 357
Sbjct: 122 P 122
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 61.9 bits (150), Expect = 2e-10
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
++D A C+ P +SW +G+ + ++
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------------- 351
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+S L + + ++ D G + C N A+A+ L++
Sbjct: 352 ----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 60.7 bits (147), Expect = 5e-10
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 9/124 (7%)
Query: 233 TGPERLSGKVFSDLHADDFACKPEIR--MDSRYVEAVSSENATVVCRVDSIPPAAISWYW 290
TG RLS + + + + + +E + + +++C P + WY
Sbjct: 189 TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYK 248
Query: 291 NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT 350
A R+ + +L++ +A DSG++ CV N G
Sbjct: 249 FIEGTTRKQAVVLNDRVKQVS-------GTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301
Query: 351 LQVT 354
L VT
Sbjct: 302 LTVT 305
Score = 48.0 bits (114), Expect = 5e-06
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
+ ++ +S A + C+ P I W + + + + G
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD----VPGLRQISSDG------K 60
Query: 321 LVLTNA------QESDSGRFYCVAENRAGIA 345
LV QE + + C+A N+ G
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSI 91
Score = 44.2 bits (104), Expect = 8e-05
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 11/97 (11%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSI---PPAAISWYWNGRLLLNNTAFSSYQRI 307
D + +A + C + S +SW+ + A +
Sbjct: 100 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD-GKY 158
Query: 308 FVIEQGEYERKSSLVLTNAQESDS-GRFYCVAENRAG 343
V+ G L + D + C ++R
Sbjct: 159 LVLPSG------ELHIREVGPEDGYKSYQCRTKHRLT 189
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 56.7 bits (137), Expect = 2e-10
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 270 ENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
+ T +C S P + W L + A + G L + N Q
Sbjct: 26 ADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--------MDFNG------ILTIRNVQP 71
Query: 329 SDSGRFYCVAENRAGIADANFTLQV 353
SD+G + C N + TL V
Sbjct: 72 SDAGTYVCTGSNMFAMDQGTATLHV 96
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 60.9 bits (147), Expect = 3e-10
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
KP+ + + V+ C PPA I+W+ + + N + +
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS------ 170
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD--ANFTLQVTY 355
G S +L + + D C E+ + L V Y
Sbjct: 171 GTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY 215
Score = 59.0 bits (142), Expect = 1e-09
Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 17/104 (16%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFV 309
+ + I + AT+ C S P P +W L
Sbjct: 215 YPPEVSISGYDNNW-YLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQG------ 267
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ L++ + + C N G A T+QV
Sbjct: 268 ---------AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 46.2 bits (109), Expect = 2e-05
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 264 VEAVSSENATVVCRVDSIPP-----AAISWYWNGR-------LLLNNTAFSSYQRIFVI- 310
V ++ T+ C + + ++W +G ++S +R+ +
Sbjct: 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69
Query: 311 -EQGEYERKSSLVLTNAQESDSGRFYCVAEN-RAGIADANFTLQV 353
G R +SL + + D G + C+ G + L+V
Sbjct: 70 ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 57.1 bits (138), Expect = 3e-10
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P I + E AT+ C+ + P I WY G + + R+ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQVTY 355
+ +V D G + CVA N G + +L+V
Sbjct: 69 LF--FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 56.3 bits (136), Expect = 3e-10
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 18/101 (17%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ ++ ++ T+ C V + P I W +G L
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-------------- 55
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
L+L D G + CVA + + + + ++
Sbjct: 56 ----SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 60.0 bits (145), Expect = 5e-10
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 265 EAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
E N + C+V +I I WY + R + + + G +L++
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD-------FKDGIC----TLLI 280
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
T + D+G + + ++ G + L
Sbjct: 281 TEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 59.2 bits (143), Expect = 1e-09
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + V+ + C P + SW + ++ R+ V +G
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDS------PRLEVESKG 55
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
K+ + + D G + C + GIA + + +
Sbjct: 56 ---NKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK 95
Score = 57.3 bits (138), Expect = 4e-09
Identities = 8/113 (7%), Positives = 30/113 (26%), Gaps = 7/113 (6%)
Query: 241 KVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA 300
K L + ++ + + + A +++ +N + +
Sbjct: 95 KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE--- 151
Query: 301 FSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ + + + Q+ D G + ++ + L
Sbjct: 152 -GPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 200
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 55.8 bits (135), Expect = 5e-10
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ + + V S A + W NG L +F + R + G ++ L+
Sbjct: 18 QQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKA--RYRFKKDG---KRHILIF 71
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ + D GR+ + A L V
Sbjct: 72 SDVVQEDRGRYQVITNGGQCEA----ELIV 97
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 59.3 bits (143), Expect = 6e-10
Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 22/102 (21%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ + R + T +C+ P + +G L
Sbjct: 185 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----------------- 227
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
G + C A + G T+ V
Sbjct: 228 -----PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 45.4 bits (107), Expect = 2e-05
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 16/105 (15%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRIFVIE 311
P++ R +E TVVC +D + P + + + L V
Sbjct: 7 PQLVS-PRVLEV--DTQGTVVCSLDGLFPVSEAQVHLALGDQRL----------NPTVTY 53
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ + V A++ + R C + T+ +
Sbjct: 54 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 98
Score = 36.6 bits (84), Expect = 0.016
Identities = 17/106 (16%), Positives = 27/106 (25%), Gaps = 27/106 (25%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P + E TV C P A ++ +
Sbjct: 99 PAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTLNGV--------------------PAQ 136
Query: 315 YERKSSLVLTNAQESDSGRFY-CVAENRAG----IADANFTLQVTY 355
+ +L A D+GR + C A + L+V Y
Sbjct: 137 PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 182
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 55.9 bits (135), Expect = 6e-10
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ E+ D + ++E A C V S WY NG + + +RI + G
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPS------KRITISHVG 60
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQ 352
R LV+ + + D G + V + A A
Sbjct: 61 ---RFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 54.2 bits (131), Expect = 2e-09
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
E+ VE E A + S P W G+ L + +IE
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAAS------PDCEIIE 55
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
G +K L+L N Q +G A N A L+V
Sbjct: 56 DG---KKHILILHNCQLGMTGEVSFQAANTKSAA----NLKVK 91
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 54.4 bits (131), Expect = 2e-09
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
YV AV E + C + P A + W +G ++ + + + ++
Sbjct: 19 GKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVES------PALLLQKEDT---VR 68
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
LVL Q DSG + C ++ + A+FT+ VT
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDDES----ASFTVTVT 99
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 57.6 bits (139), Expect = 2e-09
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 18/88 (20%)
Query: 270 ENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
E + C + +Y NG+ + S+L +
Sbjct: 98 EPLALRCHAWKDKLVYNVLYYRNGKAF-----------------KFFHWNSNLTILKTNI 140
Query: 329 SDSGRFYCVAENRAGIADANFTLQVTYR 356
S +G ++C + A ++ V
Sbjct: 141 SHNGTYHCSGMGKHRYTSAGISVTVKEL 168
Score = 50.7 bits (121), Expect = 4e-07
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 20/91 (21%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
K I + +V E T+ C V +P ++ W+ NG +T
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST------------- 47
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
S +T+A +DSG + C
Sbjct: 48 ------PSYRITSASVNDSGEYRCQRGLSGR 72
Score = 43.0 bits (101), Expect = 1e-04
Identities = 17/104 (16%), Positives = 27/104 (25%), Gaps = 16/104 (15%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
P + + T+ C + + FS Y +
Sbjct: 171 APVLNASVT-SPLLEGNLVTLSCETKLLLQRPGLQLY----------FSFYMGSKTL--R 217
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIAD---ANFTLQVT 354
S + A+ DSG ++C A G LQV
Sbjct: 218 GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 57.6 bits (138), Expect = 2e-09
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 14/114 (12%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDS---IPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
P + + S + E+ + C V + W ++ + Y +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 312 QGEYE-----------RKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
G ++ SL+L + Q++D G + C + +++
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
Score = 53.3 bits (127), Expect = 5e-08
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 18/114 (15%)
Query: 259 MDSRYVEAVSSENATVVCRVDSIPP---AAISWYWNGRLLLNNTAFSSYQ---------- 305
+ R + + + C + S ++W ++ SY
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182
Query: 306 ----RIFVIEQGEYERKS-SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
R V G+ R S+ L +ESD G + C + L V
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 53.5 bits (129), Expect = 3e-09
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
R VE + A + + W G + + + + +G
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISAS------NKYGLATEG 60
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ +L + +D G + + AG + F L+V
Sbjct: 61 ---TRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 57.8 bits (139), Expect = 3e-09
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 262 RYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
R + + C + PP+ +SW + + G S
Sbjct: 143 RAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN-------PNGTVTVISR 195
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
L ++E+ C+ + TL V Y
Sbjct: 196 YRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY 230
Score = 57.8 bits (139), Expect = 3e-09
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 15/91 (16%)
Query: 266 AVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
+ + + C+ D+ PPA W L + ++
Sbjct: 244 YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQN--------------RTLFFKG 289
Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTY 355
S +G + C A N G + +T
Sbjct: 290 PINYSLAGTYICEATNPIGTRSGQVEVNITE 320
Score = 46.7 bits (110), Expect = 1e-05
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 14/104 (13%)
Query: 264 VEAVSSENATVVCRV----DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER-- 317
+ + + C S+ ++W + N A + + ER
Sbjct: 24 MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVE 83
Query: 318 -------KSSLVLTNAQESDSGRFYCVAEN-RAGIADANFTLQV 353
++ L+ + D G + C G ++ L V
Sbjct: 84 FLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 57.5 bits (140), Expect = 3e-09
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 17/161 (10%)
Query: 52 QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSDN 109
L ++ N+ +P + + L L + + G + ++ L NL+ I N
Sbjct: 104 HYLYITHTNVSGAIPDFL---SQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGN 159
Query: 110 LLT-SIPSLTFQSVRFLRDLNLARNPIS-KI--EKGAFQFVPGLVKLDMSESRLE-HISP 164
++ +IP + + ++RN ++ KI L +D+S + LE
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----LAFVDLSRNMLEGDA-S 214
Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
F K+ + I L N L+ F + V L ++L +N
Sbjct: 215 VLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNN 254
Score = 53.3 bits (129), Expect = 7e-08
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 39/167 (23%)
Query: 48 SELTQVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEID 105
S+L + +S N L +P LNL + L+R + G S N +I
Sbjct: 173 SKLFTSMTISRNRLTGKIPPT----FANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIH 227
Query: 106 LSDNLLT-SIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLDMSESRLEHIS 163
L+ N L + + + L L+L N I +
Sbjct: 228 LAKNSLAFDLGKVGL--SKNLNGLDLRNNRIYGTL------------------------- 260
Query: 164 PEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDNPWVC 209
P+ T K L S+ ++ N L P L + + +N +C
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNKCLC 305
Score = 41.4 bits (98), Expect = 5e-04
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 52 QVLDMSGNNLQ---ILPKEAFRRAGLLNLQKLFLA-RCHI-GQIDSGALDGLTNLIEIDL 106
LD+SG NL +P L L L++ ++ G I A+ LT L + +
Sbjct: 53 NNLDLSGLNLPKPYPIPSSLAN---LPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYI 108
Query: 107 SDNLLT-SIPSLTFQSVRFLRDLNLARNPISKIEKG----AFQFVPGLVKLDMSESRLE- 160
+ ++ +IP ++ L L+ + N +S G + +P LV + +R+
Sbjct: 109 THTNVSGAIPD-FLSQIKTLVTLDFSYNALS----GTLPPSISSLPNLVGITFDGNRISG 163
Query: 161 HISPEAFTGAKSLESIKLNGNRLS 184
I + +K S+ ++ NRL+
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLT 187
Score = 33.7 bits (78), Expect = 0.17
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 97 GLTNLIEIDLSDNLLT---SIPSLTFQSVRFLRDLNLARNP---------ISKIEKGAFQ 144
+ +DLS L IPS + ++ +L L + I+K+ +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ---- 102
Query: 145 FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELH 203
L L ++ + + P+ + K+L ++ + N LS P S+ L L+ I
Sbjct: 103 ----LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFD 157
Query: 204 DN 205
N
Sbjct: 158 GN 159
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 56.1 bits (135), Expect = 3e-09
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 265 EAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
E N + C+V +I I WY + R + + + G +L++
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-------EKHDFKDGI----CTLLI 175
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
T + D+G + + ++ G + L
Sbjct: 176 TEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 51.9 bits (124), Expect = 9e-08
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 264 VEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
VE + + + + A +++ +N + + Y+ G +
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGII----EMF 64
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ Q+ D G + ++ + L
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 95
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 58.0 bits (139), Expect = 4e-09
Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 22/102 (21%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ + R + T +C+ P + +G L
Sbjct: 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----------------- 412
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
G + C A + G T+ V
Sbjct: 413 -----PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 47.9 bits (113), Expect = 7e-06
Identities = 12/104 (11%), Positives = 27/104 (25%), Gaps = 17/104 (16%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRIFVI 310
+ E+ + +N T+ C+V+ P A + + L A
Sbjct: 88 RVELAPLPSWQPV--GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE------- 138
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + + ++ F C E +
Sbjct: 139 -----PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177
Score = 40.2 bits (93), Expect = 0.001
Identities = 17/105 (16%), Positives = 26/105 (24%), Gaps = 25/105 (23%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
P + E TV C P A ++ L
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTLNGVPAQPLG----------------- 324
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAG----IADANFTLQVTY 355
++ L+L E + F C A + L+V Y
Sbjct: 325 --PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 367
Score = 39.1 bits (90), Expect = 0.004
Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 20/102 (19%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISW--YWNGRLLLNNTAFSSYQRIFVIEQG 313
+ + V + V C P + + LL
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN------------- 47
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
+ V + + + C + G + A L V +
Sbjct: 48 -----NRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYW 84
Score = 36.0 bits (82), Expect = 0.034
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 13/90 (14%)
Query: 270 ENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
TVVC +D + P + + + L V + + V A
Sbjct: 204 TQGTVVCSLDGLFPVSEAQVHLALGDQRL----------NPTVTYGNDSFSAKASVSVTA 253
Query: 327 QESDSGRFYCVAENRAGIADANFTLQVTYR 356
++ + R C + T+ +
Sbjct: 254 EDEGTQRLTCAVILGNQSQETLQTVTIYSF 283
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 57.5 bits (138), Expect = 4e-09
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 9/105 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP----PAAISWYWNGRLLLNNTAFSSYQRIFV 309
+ + E A + C S I W ++ + +
Sbjct: 228 HRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIG----LDFGVYSI 283
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
+ +++L N E G Y C N T+ +
Sbjct: 284 LTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 53.7 bits (128), Expect = 7e-08
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 13/102 (12%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P ++ + + C + I+WY N + L+ + S
Sbjct: 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYS--------- 178
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ +L++ N + DSGR+ C + +
Sbjct: 179 ---QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRC 217
Score = 38.3 bits (88), Expect = 0.006
Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 25/110 (22%)
Query: 264 VEAVSSENATVVCRVDS---------IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
A E + C ++W G+ +R+
Sbjct: 39 DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR-----PLNRRV------- 86
Query: 315 YERKSSLVLTNAQESDSGRFY-CVAENRAGIAD-ANFTLQVTYRGVGLPF 362
+ L + N +DS R Y C + G + +P
Sbjct: 87 --KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE 134
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 53.1 bits (128), Expect = 5e-09
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
A E + C V S A + W+ NG ++ R + +G +K L++
Sbjct: 17 TTAYCGERVELECEV-SEDDANVKWFKNGEEIIP----GPKSRYRIRVEG---KKHILII 68
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
A ++D+ + + A L V +
Sbjct: 69 EGATKADAAEYSVMTTGGQSSA----KLSVDLK 97
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 53.2 bits (128), Expect = 6e-09
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ I D V+ +AT CR+ + W+ + L + I G
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA----NELNEIDAQPGG 68
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ L L DSG Y AG A+ L+VT
Sbjct: 69 YH----VLTLRQLALKDSGTIYFE----AGDQRASAALRVT 101
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 52.8 bits (127), Expect = 6e-09
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
+ I + +E + E+ + C + W G+ + ++ R
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS------SRFQAT 59
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
QG RK LV+ A SD+G A
Sbjct: 60 RQG---RKYILVVREAAPSDAGEVVFSVRGLTSKA 91
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 52.8 bits (127), Expect = 7e-09
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 13/85 (15%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
+ + A + W NG+ + S + G K +L ++ +
Sbjct: 32 HKIRLTVELAD-HDAEVKWLKNGQEIQM-----SGSKYIFESIG---AKRTLTISQCSLA 82
Query: 330 DSGRFYCVAENRAGIADANFTLQVT 354
D + CV L V
Sbjct: 83 DDAAYQCVVGGEKCST----ELFVK 103
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 53.7 bits (129), Expect = 1e-08
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 22/104 (21%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
K ++++ ++ + ++ T+ C+ P + I W+ NG L+ +T
Sbjct: 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT------------- 50
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
A +DSG + C L V +
Sbjct: 51 ------QPSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFE 86
Score = 50.6 bits (121), Expect = 2e-07
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 19/91 (20%)
Query: 265 EAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
E E + C P ++++ NG+ + +
Sbjct: 96 EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ-----------------KFSHLDPTFSI 138
Query: 324 TNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
A S SG ++C + + T+ V
Sbjct: 139 PQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 54.1 bits (130), Expect = 1e-08
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 20/88 (22%)
Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
+ N T+ C V + ++ Y +G+ L + ++
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDGKHLKLS--------------------QRVITHKW 152
Query: 327 QESDSGRFYCVAENRAGIADANFTLQVT 354
S S +F C A N+ + +
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSCP 180
Score = 42.9 bits (101), Expect = 8e-05
Identities = 11/107 (10%), Positives = 28/107 (26%), Gaps = 16/107 (14%)
Query: 260 DSRYVEAVSSENAT--VVCRVDSIPPAAISWYWNGRLLL------NNTAFSSYQRIFVIE 311
++ ++ + S I W F + +
Sbjct: 5 NALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK 64
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQVTYR 356
G +L + + + D + + G + + F L++ R
Sbjct: 65 NG------TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER 105
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 51.9 bits (125), Expect = 1e-08
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
I E+ + C + + W + + + + Q+ V+ +G
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKS------QKYDVVCEG- 60
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ LV+ A D+G + C E A + + +
Sbjct: 61 --TMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKAS 98
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 53.4 bits (128), Expect = 2e-08
Identities = 7/90 (7%), Positives = 21/90 (23%), Gaps = 19/90 (21%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ ++ T+ ++ + +L +
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG-------------------GKTLSV 147
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ + DSG + C + + V
Sbjct: 148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 51.1 bits (122), Expect = 1e-07
Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS---- 319
V + + C W + ++ + S + + +
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 320 ----SLVLTNAQESDSGRFYCVAENRAG 343
L++ N + DS + C E++
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKE 92
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 55.2 bits (132), Expect = 3e-08
Identities = 7/93 (7%), Positives = 21/93 (22%), Gaps = 19/93 (20%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ ++ T+ ++ + +L +
Sbjct: 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG-------------------GKTLSV 146
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ + DSG + C + + V
Sbjct: 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF 179
Score = 50.6 bits (120), Expect = 9e-07
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 8/88 (9%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQ--------RIFVIEQGEY 315
V + + C W + ++ + S R
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAG 343
+ L++ N + DS + C E++
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKE 91
Score = 40.2 bits (93), Expect = 0.001
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 19/90 (21%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
V + + C V + L N A S
Sbjct: 291 VMRATQLQKNLTCEVWGPTSPKLMLSLK---LENKEAKVS---------------KREKA 332
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
++G + C+ + +G ++V
Sbjct: 333 VWVLNPEAGMWQCLLSD-SGQVLLESNIKV 361
Score = 39.8 bits (92), Expect = 0.002
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
S + I++ + + Q + + +L Q + SG
Sbjct: 217 AERASSSKSWITFDLKNKEVSVK---RVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273
Query: 336 CVAENRAGIADANFTLQVT 354
E + G L V
Sbjct: 274 LALEAKTGKLHQEVNLVVM 292
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 50.8 bits (122), Expect = 3e-08
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
D + EA AT+ C + A + W L + R + + G
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDG------GRYSLKQDG- 59
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ L + + +D+G + C+ + TL V
Sbjct: 60 --TRCELQIHDLSVADAGEYSCMCGQ----ERTSATLTVR 93
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 50.8 bits (122), Expect = 3e-08
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+I + + C + P W NG + + R+ V+++G
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQES------DRLKVVQKG- 58
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
R LV+ NA D G + + A +
Sbjct: 59 --RIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVIS 95
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 50.5 bits (121), Expect = 4e-08
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 14/91 (15%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ V + + P + WY NG+ + + + +G + L +
Sbjct: 18 YQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPS------TKYIFEHKG---CQRILFI 67
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
N Q +D +Y A + + L V
Sbjct: 68 NNCQMTDDSEYYVTAGD----EKCSTELFVR 94
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 53.1 bits (127), Expect = 4e-08
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 13/102 (12%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ + ++ T+ C + A I W +N + L R+ + +
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTE------RMTLSQNN- 162
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTY 355
S L + + D+G + C N + +N L + +
Sbjct: 163 ----SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 45.0 bits (106), Expect = 2e-05
Identities = 9/86 (10%), Positives = 21/86 (24%), Gaps = 7/86 (8%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER------- 317
+ N ++ + A +WY ++ + G+
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 318 KSSLVLTNAQESDSGRFYCVAENRAG 343
SL+ D G + +
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENY 95
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 55.0 bits (131), Expect = 4e-08
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQ--------R 306
P + D++ T+ C + + L S R
Sbjct: 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR 172
Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
I + QG + S+V+ + SD+G++ C A + + N LQV
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 222
Score = 51.9 bits (123), Expect = 4e-07
Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 7/103 (6%)
Query: 264 VEAVSSENATVVCRVDS----IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
V AV E V C W G L + + ++ R
Sbjct: 452 VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENS--RLV 509
Query: 320 SLVLTNAQESDSGRFYCVAENRAGI-ADANFTLQVTYRGVGLP 361
SL L +D G ++C + A + V R
Sbjct: 510 SLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGS 552
Score = 50.8 bits (120), Expect = 9e-07
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ + A +CR S + G+ +++ ++ + + S+V+
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAP------AFEGRILLNPQDKDGSFSVVI 294
Query: 324 TNAQESDSGRFYCVAENRAG 343
T ++ D+GR+ C A +
Sbjct: 295 TGLRKEDAGRYLCGAHSDGQ 314
Score = 45.4 bits (106), Expect = 4e-05
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWY--WNGRLLL--------NNTAFSSYQRIFVIEQG 313
V+ V+ + V+C + +I ++ W G + Y+ + +
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGI 344
+++L D+G ++C+
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Score = 41.5 bits (96), Expect = 7e-04
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 10/97 (10%)
Query: 264 VEAVSSENATVVCRVDS---IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY----- 315
V +V + ++ C W G T SS + G
Sbjct: 10 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF 69
Query: 316 --ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT 350
+ + + DSGR+ C + + +
Sbjct: 70 PENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS 106
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 54.8 bits (132), Expect = 5e-08
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 236 ERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLL 295
R D D +P + E ++A CRV + P ++W+ + R L
Sbjct: 464 HRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL 523
Query: 296 LNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + +Y L + + D G + A+N G + L VT
Sbjct: 524 KQSVKYMKRY-----NGNDY----GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 50.8 bits (121), Expect = 6e-08
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR--LLLNNTAFSSYQRIFVIEQ 312
+ + + + T+ C +++ W + LN + ++
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+ S+ + N D G + C+ ++ + V
Sbjct: 62 SANQ--LSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIV 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 51.7 bits (124), Expect = 6e-08
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 48 SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
+ + + L + E A +NL+ L L + + + L L L +++LS
Sbjct: 24 AAVRE-LVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79
Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
+N + + + + L LNL+ N + I
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111
Score = 42.4 bits (100), Expect = 9e-05
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP 164
D+ + + + T +VR L L+ ++ KIE +F L L + L +
Sbjct: 9 DMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLISV-- 64
Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
L+ ++L+ NR+ E L L + L N
Sbjct: 65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 49.6 bits (119), Expect = 8e-08
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 14/99 (14%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ ++ A C+ P A ++W L + + ++G
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRAS------GKHQPSQEG- 60
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
L ++ +++DS + C G A + L V
Sbjct: 61 --LTLRLTISALEKADSDTYTCD----IGQAQSRAQLLV 93
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 49.8 bits (118), Expect = 1e-07
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPA---AISWYWNGRLLLNNTAFSSYQRI 307
F KP+ V + ++A VV +V+ I W+ L L + + + +
Sbjct: 15 FLKKPDS------VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFK 68
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
L + D G + + + F + V
Sbjct: 69 ESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 48.7 bits (116), Expect = 2e-07
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 258 RMDSRYVEAVSSENATVV--------CRVDSIPPAAISWYWNGRLLL--NNTAFSSYQRI 307
++ + ++N TVV CRVD ++ W + L ++ RI
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ +E S+ +++ SD G++ C + + L V
Sbjct: 62 ELVRASWHE--LSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 52.7 bits (127), Expect = 2e-07
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 29/168 (17%)
Query: 52 QVLDMSGNNLQILPKEAFRRA--GLLNLQKLFLARCHIGQID----SGALDGLTNLIEID 105
Q LD+ L + L Q + L C + + S AL L E++
Sbjct: 6 QSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 106 LSDNLLTSI------PSLTFQSVRFLRDLNLARNPISKIEKGA------FQFVPGLVKLD 153
L N L + L S + ++ L+L ++ G + +P L +L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCK-IQKLSLQNCCLT--GAGCGVLSSTLRTLPTLQELH 119
Query: 154 MSESRLEHISPEAFTGA-----KSLESIKLNGNRLSHFPVRSVEPLLK 196
+S++ L + LE ++L LS + +L+
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167
Score = 46.5 bits (111), Expect = 2e-05
Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 29/158 (18%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLL-----NLQKLFLARCHIGQID----SGALDGLTNLI 102
Q L +S N L L L+KL L C + + L +
Sbjct: 116 QELHLSDNLLG--DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 103 EIDLSDNLL-----TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV------PGLVK 151
E+ +S+N + + S L L L ++ L +
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNCRDLCGIVASKASLRE 231
Query: 152 LDMSESRL-----EHISPEAFTGAKSLESIKLNGNRLS 184
L + ++L + P + L ++ + ++
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269
Score = 45.3 bits (108), Expect = 4e-05
Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 29/159 (18%)
Query: 52 QVLDMSGNNL-----QILPKEAFRRAGLLNLQKLFLARCHIGQID----SGALDGLTNLI 102
L++ N L + + + +QKL L C + S L L L
Sbjct: 59 AELNLRSNELGDVGVHCV-LQGLQTPSC-KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 103 EIDLSDNLLT-----SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV------PGLVK 151
E+ LSDNLL + L L L +S P +
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS--AASCEPLASVLRAKPDFKE 174
Query: 152 LDMSESRLEHISPEAFTGA-----KSLESIKLNGNRLSH 185
L +S + + LE++KL ++
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213
Score = 42.3 bits (100), Expect = 3e-04
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 31/155 (20%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLL-----NLQKLFLARCHIGQID----SGALDGLTNLI 102
+ L ++GN L + A L L+ L++ C S L L+
Sbjct: 287 KELSLAGNELG--DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344
Query: 103 EIDLSDNLLT-----SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV------PGLVK 151
E+ +S+N L + Q LR L LA +S + L +
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS--DSSCSSLAATLLANHSLRE 402
Query: 152 LDMSESRLEHISPEAFTGAKSL-ESIKLNGNRLSH 185
LD+S + + G L ES++ G L
Sbjct: 403 LDLSNN---CLGDA---GILQLVESVRQPGCLLEQ 431
Score = 39.2 bits (92), Expect = 0.004
Identities = 29/187 (15%), Positives = 51/187 (27%), Gaps = 57/187 (30%)
Query: 52 QVLDMSGNNLQ----ILPKEAFRRAGLLNLQKLFLARCHIGQID----SGALDGLTNLIE 103
+ L + N L L+ L++ C I L +L E
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLH-PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288
Query: 104 IDLSDN-------------LLTSIPSLT--------------------FQSVRFLRDLNL 130
+ L+ N LL L RFL +L +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348
Query: 131 ARNPISKIEKGAFQFVPG-------LVKLDMSESRL-----EHISPEAFTGAKSLESIKL 178
+ N + + G + G L L +++ + ++ SL + L
Sbjct: 349 SNNRLE--DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDL 405
Query: 179 NGNRLSH 185
+ N L
Sbjct: 406 SNNCLGD 412
Score = 34.6 bits (80), Expect = 0.10
Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 20/124 (16%)
Query: 99 TNLIEIDLSDNLLT--SIPSLTFQSVRFLRDLNLARNPISKIEKGA------FQFVPGLV 150
++ +D+ L+ L ++ + + L ++ E + P L
Sbjct: 3 LDIQSLDIQCEELSDARWAEL-LPLLQQCQVVRLDDCGLT--EARCKDISSALRVNPALA 59
Query: 151 KLDMSESRLEHISPEAFTGA-----KSLESIKLNGNRLSHFPVRSVEPLLK----LMMIE 201
+L++ + L + ++ + L L+ + L+ L +
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 202 LHDN 205
L DN
Sbjct: 120 LSDN 123
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 50.3 bits (120), Expect = 2e-07
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 20/119 (16%)
Query: 239 SGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLN 297
+ SD + + R+V + + C +++ NG+
Sbjct: 74 NLSTLSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDR-- 130
Query: 298 NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTY 355
+ + F I A DSG ++C + + + +T
Sbjct: 131 --KYFHHNSDFHI-------------PKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174
Score = 46.0 bits (109), Expect = 7e-06
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
K + ++ ++ + ++ T+ C+ P + W+ N L+ +
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA------------- 53
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
SS + A +DSG + C L+V
Sbjct: 54 ------SSYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHI 88
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 48.5 bits (116), Expect = 3e-07
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ R EA A + C + + P + W+ L + R + + G
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDG------DRHSLRQDG- 70
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ L + D+G + C+ G + L V
Sbjct: 71 --ARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVR 104
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 50.3 bits (119), Expect = 4e-07
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 13/111 (11%)
Query: 241 KVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA 300
K + D + + Y ++S + C P + I W N + + +
Sbjct: 100 KDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDED 157
Query: 301 FSSYQRIFVIEQGEYERKSSLVLTN-AQESDSGRFYCVAENRAGIADANFT 350
+ + L L ++ SG + C +
Sbjct: 158 DKNIG----------SDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 198
Score = 38.0 bits (87), Expect = 0.004
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 26/92 (28%)
Query: 267 VSSENATVV--CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
E+ +V+ C I+W+ +G+++ T E K L
Sbjct: 14 DYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT----------------EDKKKWNLG 54
Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ + G + C LQV YR
Sbjct: 55 SNAKDPRGMYQCKGSQNKS-----KPLQVYYR 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 4e-07
Identities = 60/342 (17%), Positives = 97/342 (28%), Gaps = 114/342 (33%)
Query: 26 KG-GKQWM---ECRDK----------FLITIPEAPESELTQVLDMSGNNLQILPKEAFRR 71
G GK W+ C F + + E VL+M
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--VLEM--------------- 201
Query: 72 AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRF------L 125
LQKL + QID + I L + + + +S + L
Sbjct: 202 -----LQKL----LY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 126 RDLNLAR-----NPISKI-----EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE- 174
++ A+ N KI K F+ + L+H S T +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHS-MTLTPDEVKSL 306
Query: 175 SIKLNGNRLSHFP--VRSVEPLLKLMMI--ELHDNP--WVCDCNMRSIKMWLADKKNVPV 228
+K R P V + P L +I + D W W
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATW---------DNWK-------- 348
Query: 229 QPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVE-AVSSENATVVCRVDSIPPAAIS 287
C ++L+ + S L+ + A E R + +V +A IP +S
Sbjct: 349 HVNC---DKLTTIIESSLNVLEPA---EYR--KMFDRLSVFPPSA-------HIPTILLS 393
Query: 288 WYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
W + V+ + + SLV +ES
Sbjct: 394 LIWFD---------VIKSDVMVVVN-KLHKY-SLVEKQPKES 424
Score = 47.2 bits (111), Expect = 1e-05
Identities = 56/341 (16%), Positives = 102/341 (29%), Gaps = 83/341 (24%)
Query: 44 EAPESE--LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLAR-----CHIGQIDSGALD 96
E + L + LD Q LP+E + D
Sbjct: 299 TPDEVKSLLLKYLDCR---PQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCD 353
Query: 97 GLTNLIEIDLSDNLLTSIPSLTFQS-VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
LT +IE L + L + F F ++ P + L+ D+
Sbjct: 354 KLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHI---PTILLS---------LIWFDVI 400
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVEPLLKLM-MIELHDNPWVCDCNM 213
+S + + + SL ++ + P +E +KL LH +
Sbjct: 401 KSDVMVVVNKLHK--YSL--VEKQPKESTISIPSIYLELKVKLENEYALHRS-------- 448
Query: 214 RSIKMWLADKKNVP--VQPACTGPERLSGKVFSDL--H------ADDFACKPEIRMDSRY 263
+ D N+P P L +S + H + + +D R+
Sbjct: 449 ------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA--FSSYQRIFVIEQGEYERKSSL 321
+E + R DS WN + NT Y+ +YER +
Sbjct: 503 LE------QKI--RHDSTA-------WNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 322 VLTNAQESDS----GRFYCV------AENRAGIADANFTLQ 352
+L + + ++ + AE+ A +A+ +Q
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 30.6 bits (68), Expect = 1.9
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 23/87 (26%)
Query: 527 IGGELDDNYP------------PDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLP 574
+ L NY P + + Q + L N+ AK V L
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAK------YNVSRLQ 135
Query: 575 PVNALKRVLSRGSPDEGY----QEGSG 597
P L++ L P + GSG
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSG 162
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 49.1 bits (117), Expect = 5e-07
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 19/88 (21%)
Query: 270 ENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
+ + C + +Y +G L + ++ +TNA
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEAL-----------------KYWYENHNISITNATV 143
Query: 329 SDSGRFYCVAENRAGIADAN-FTLQVTY 355
DSG +YC + ++ + V
Sbjct: 144 EDSGTYYCTGKVWQLDYESEPLNITVIK 171
Score = 48.0 bits (114), Expect = 1e-06
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
KP++ ++ + EN T+ C ++ + W+ NG L
Sbjct: 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN------------- 50
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAEN 340
SSL + NA+ DSG + C +
Sbjct: 51 ------SSLNIVNAKFEDSGEYKCQHQQ 72
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 47.3 bits (113), Expect = 6e-07
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
+ + +E + AT+ C + S A + W + +L + + ++G
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSS-VAAPVKWCYGNNVLRPG------DKYSLRQEG- 60
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
LV+ N + DSGR+ C ++ A TL VT
Sbjct: 61 --AMLELVVRNLRPQDSGRYSCSFGDQTTSA----TLTVT 94
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 49.4 bits (117), Expect = 6e-07
Identities = 9/87 (10%), Positives = 23/87 (26%), Gaps = 12/87 (13%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
++ ++ C SW LN + S+L +
Sbjct: 17 DSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNE------------GTTSTLTMNPVSFG 64
Query: 330 DSGRFYCVAENRAGIADANFTLQVTYR 356
+ + C A + + +++
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEIYSF 91
Score = 48.6 bits (115), Expect = 1e-06
Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 18/120 (15%)
Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFS 302
+ F PEI + + + TV C V + P I L+ +
Sbjct: 86 VEIYSFPKDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE 142
Query: 303 SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG-------IADANFTLQVTY 355
R + + + T E C A+ + A LQV
Sbjct: 143 DADR-----KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 49.8 bits (118), Expect = 7e-07
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 12/114 (10%)
Query: 254 KPEIRMDSRYVEAVSSEN-ATVVCRV-DSIPPAAISWYWNGRLLLN----NTAFSSYQRI 307
E+ + + + C + P I+WY NG+ L N R
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD------ANFTLQVTY 355
G S+L L ++ F+C A F L + Y
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY 231
Score = 44.8 bits (105), Expect = 3e-05
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 264 VEAVSSENATVVCRVDSIPPAA-ISWYWNGR------LLLNNTAFSSYQRIFVIEQGEYE 316
VE + ++ + C + W+ R L S Q +G
Sbjct: 10 VEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSP 69
Query: 317 R-----KSSLVLTNAQESDSGRFYC-VAENRAGIADANFTLQV 353
+ LVL AQ D + C V AG A+A L V
Sbjct: 70 PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 48.8 bits (116), Expect = 8e-07
Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 20/88 (22%)
Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
NAT+ C V + Y L + ++
Sbjct: 108 WECSNATLTCEVLEGTDVELKLYQGKEHLRSL--------------------RQKTMSYQ 147
Query: 327 QESDSGRFYCVAENRAGIADANFTLQVT 354
+ F C A NR +
Sbjct: 148 WTNLRAPFKCKAVNRVSQESEMEVVNCP 175
Score = 43.0 bits (101), Expect = 7e-05
Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 12/102 (11%)
Query: 260 DSRYVEAVSSENATVVCRVDSIPPA--AISWYWNGRLLL----NNTAFSSYQRIFVIEQG 313
DS V + + + W L+ F ++ G
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
L + N DSG + + G N L +
Sbjct: 62 ------DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 97
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 48.5 bits (116), Expect = 9e-07
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
+ LD+ G + ++ E L + + I ++D L L + +++N +
Sbjct: 22 RELDLRGYKIPVI--ENLGAT-LDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI 76
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIE 139
I Q++ L +L L N + ++
Sbjct: 77 CRIGEGLDQALPDLTELILTNNSLVELG 104
Score = 47.0 bits (112), Expect = 3e-06
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP 164
L+ L+ + R+L+L I IE + +D S++ + +
Sbjct: 3 KLTAELIEQAAQY--TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL-- 57
Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
+ F + L+++ +N NR+ + L L + L +N
Sbjct: 58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 47.6 bits (113), Expect = 1e-06
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 264 VEAVSSENATVVCRVDSIPPA---AISWYW-----------NGRLLLNNTAFSSYQRIFV 309
+ A+ + A + CR+ A + WY NG+ A R +
Sbjct: 16 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 75
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+++ E K +L + N + SD G + C + + +A L+V
Sbjct: 76 LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 48.5 bits (115), Expect = 1e-06
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
V + + C+ + P A + W + +L+ ++ + E+ + S+L +
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKR---EEKLFNVTSTLRI 182
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + FYC + L +
Sbjct: 183 NT---TTNEIFYCTFRRLDPEENHTAELVIP 210
Score = 43.8 bits (103), Expect = 6e-05
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 264 VEAVSSENATVVCRVDSIPPAA---ISWYW-----------NGRLLLNNTAFSSYQRIFV 309
N T+ C+ + YW +G L S QR +
Sbjct: 11 YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARL 70
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
++ ++L +T+ + D+G + C+ + G T++V
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKV 113
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 49.4 bits (117), Expect = 2e-06
Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 23/114 (20%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA----ISWYWNGRLLLNNTAFSSYQRIFVI 310
+ + S ++ + T+ V P +W + + NNT
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------- 51
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLG 364
++L + +A ++G + ++ + + + + +
Sbjct: 52 --------ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNIT 97
Score = 40.6 bits (94), Expect = 9e-04
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 271 NATVVCRVDSIPPAAISWYW----NGRL---LLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
+ +V +P I + W G+L L+ + + + + G L
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG------HLFK 262
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+A D+ +F+CVA+ I D + +
Sbjct: 263 ESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293
Score = 39.0 bits (90), Expect = 0.003
Identities = 6/94 (6%), Positives = 23/94 (24%), Gaps = 14/94 (14%)
Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
YV + + + A ++ + + Q
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ--------------D 146
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + +G + + + A+ + ++
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIM 180
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 48.0 bits (114), Expect = 2e-06
Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 20/104 (19%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
+ R+V + + C +++ NG+ + + F I
Sbjct: 89 GWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKGR----KYFHHNSDFYI-- 141
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
A DSG ++C + + +T
Sbjct: 142 -----------PKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174
Score = 45.6 bits (108), Expect = 1e-05
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
K + ++ ++ + ++ T+ C+ P + W+ N L+ +
Sbjct: 7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA------------- 53
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
SS + A DSG + C + L+V
Sbjct: 54 ------SSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHI 88
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 49.0 bits (117), Expect = 2e-06
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 4/128 (3%)
Query: 59 NNLQILPKEAFRRAGLLNLQKLFLARCHIGQID-SGALDGLTNLIEIDLSDNLLTSIPSL 117
+ L E + + D D + NL+ +D+S T+IP
Sbjct: 185 GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF 244
Query: 118 TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVK-LDMSESRLEHISPEAFTGAKSLESI 176
TF ++L + L N + I + F L L++ S + I AF G +L +
Sbjct: 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYV 302
Query: 177 KLNGNRLS 184
G++++
Sbjct: 303 LATGDKIT 310
Score = 48.2 bits (115), Expect = 4e-06
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 89 QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV-- 146
+ + A L + + ++ RD+N K++ F+ +
Sbjct: 166 RWEHFAFIEGEPLETTIQVGAM-GKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRD 223
Query: 147 --PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGN 181
P LV LD+S++ I F K L IKL N
Sbjct: 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260
Score = 46.7 bits (111), Expect = 1e-05
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 59 NNLQILPKEAFR--RAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPS 116
L F+ R + NL L +++ + I L++I L NL +I
Sbjct: 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL-KTIGQ 266
Query: 117 LTFQSVRFLRD-LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLES 175
F + L L L + ++ IE GAF L + + ++ + E F +
Sbjct: 267 RVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325
Query: 176 I 176
I
Sbjct: 326 I 326
Score = 38.2 bits (89), Expect = 0.005
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 96 DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLAR----NPISKIEKGAFQFVPGLVK 151
D +L +D+S+ + + +A S + G + L K
Sbjct: 46 DEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEK 105
Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGN 181
+ +SE +++I AF G +L+ ++
Sbjct: 106 VILSEK-IKNIEDAAFKGCDNLKICQIRKK 134
Score = 31.7 bits (72), Expect = 0.66
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ----- 144
+ +G G L ++ LS+ + +I F+ L+ + + + A
Sbjct: 92 VVNGVTKGKQTLEKVILSEKI-KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTA 150
Query: 145 -FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGN 181
F+P + AF + LE+ G
Sbjct: 151 IFIPLGSSD--AYRFKNRWEHFAFIEGEPLETTIQVGA 186
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 48.9 bits (117), Expect = 2e-06
Identities = 32/206 (15%), Positives = 69/206 (33%), Gaps = 35/206 (16%)
Query: 52 QVLDMSGNNL-----QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL---DGL----T 99
L++ GN+L L + N+ L L ++ L
Sbjct: 141 TSLNLRGNDLGIKSSDEL-IQILAAIPA-NVNSLNLRGNNLA--SKNCAELAKFLASIPA 196
Query: 100 NLIEIDLSDNLLT-----SIPSLTFQSVRFLRDLNLARNPIS----KIEKGAFQFVPGLV 150
++ +DLS NLL + + + LNL N + + K + L
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256
Query: 151 KLDMSESRLEHISPE-------AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
+ + ++++S E AF + + + NG + + L++ + +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA- 315
Query: 204 DNPWVCDCNMRSIKMW--LADKKNVP 227
D P + + + + + N+P
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIP 341
Score = 42.4 bits (100), Expect = 3e-04
Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 33/161 (20%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLL-----NLQKLFLARCHIGQIDSGAL-DGL----TNL 101
LD+S NNL ++ L L+ +G +S L L N+
Sbjct: 25 TSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 102 IEIDLSDNLLTSI------PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG------- 148
++LS N L+ +L + L+L N S K + +F
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFT-ITVLDLGWNDFS--SKSSSEFKQAFSNLPAS 139
Query: 149 LVKLDMSESRLEHISPEAFTGA-----KSLESIKLNGNRLS 184
+ L++ + L S + ++ S+ L GN L+
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180
Score = 38.5 bits (90), Expect = 0.005
Identities = 16/150 (10%), Positives = 42/150 (28%), Gaps = 21/150 (14%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLLN---LQKLFLARCHIGQIDSGA------LDGLTNLI 102
LD+S N L + + L L + D L +L
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH--GPSLENLKLLKDSLKHLQ 256
Query: 103 EIDLSDNLLTSIP-------SLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
+ L +++ ++ F +++ + ++ I + + +L
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH--PSHSIPISNLIRELSGK 314
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
+ + A+ ++ + N
Sbjct: 315 ADVP-SLLNQCLIFAQKHQTNIEDLNIPDE 343
Score = 32.0 bits (73), Expect = 0.60
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 19/111 (17%)
Query: 92 SGALDGLTNLIEIDLSDNLLT-----SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV 146
+ +DLS N L + + + LNL+ N + K + + V
Sbjct: 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELV 72
Query: 147 PGL-------VKLDMSESRLEHISPEAFTGA-----KSLESIKLNGNRLSH 185
L L++S + L + S + ++ + L N S
Sbjct: 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 48.9 bits (117), Expect = 3e-06
Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 40/150 (26%)
Query: 52 QVLDMSGNNL-----QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA------LDGLTN 100
+ M N + + L E L+ L L G+ L N
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQ--ELKVLDLQDNTFT--HLGSSALAIALKSWPN 245
Query: 101 LIEIDLSDNLLTSI------PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
L E+ L+D LL++ + + L+ L L N I +
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE--LDAVRTLKTVID---- 299
Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLS 184
L ++LNGNR S
Sbjct: 300 -------------EKMPDLLFLELNGNRFS 316
Score = 46.2 bits (110), Expect = 2e-05
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 39/170 (22%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLL----NLQKLFLARCHIGQIDSGALDGL--------- 98
+ + +SGN I + A + + +L+ + G++ + L
Sbjct: 35 KEIVLSGN--TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92
Query: 99 -TNLIEIDLSDNLLTS--IPSLT--FQSVRFLRDLNLARNPIS-------------KIEK 140
L + LSDN L L L L N +
Sbjct: 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152
Query: 141 GAFQFVPGLVKLDMSESRLE-----HISPEAFTGAKSLESIKLNGNRLSH 185
+ P L + +RLE + + F + L ++K+ N +
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWA-KTFQSHRLLHTVKMVQNGIRP 201
Score = 38.2 bits (89), Expect = 0.006
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 28/144 (19%)
Query: 75 LNLQKLFLARCHIGQID----SGALDGLTNLIEIDLSDNLLT-----SIPSLTFQSVRFL 125
+++ L I D L ++ EI LS N + + S S + L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL-SENIASKKDL 62
Query: 126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
+ +++ D L + +A L +++L+ N
Sbjct: 63 EIAEFSDIFTGRVK-------------DEIPEALRLLL-QALLKCPKLHTVRLSDNAFGP 108
Query: 186 FPVRSVEPLLK----LMMIELHDN 205
+ L L + LH+N
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNN 132
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 46.0 bits (109), Expect = 3e-06
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
Query: 250 DFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA----ISW---------------YW 290
DFA I +E E A + C+ P I W +
Sbjct: 1 DFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILY 60
Query: 291 NGRLLLNNTAFSSYQ-RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF 349
+G + ++ + + R+ +S+ +TN Q SD G + C + G+A+
Sbjct: 61 SGDKIYDDY-YPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKI 119
Query: 350 TLQV 353
L V
Sbjct: 120 HLVV 123
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 49.0 bits (116), Expect = 3e-06
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
+ + + VE + + AT C A + G + + + I V
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG----IDVRDAPLKEIKVTSS 218
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
+ +S + N + D+G++ C+ G+ +N+ V
Sbjct: 219 RRFI--ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Score = 28.6 bits (63), Expect = 6.8
Identities = 13/116 (11%), Positives = 31/116 (26%), Gaps = 21/116 (18%)
Query: 242 VFSDLHADDFACKPEIR-MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA 300
+ L +D C + S+ V +V++ P W +G
Sbjct: 65 LLPQLKENDTHCIDFHYFVSSKSNSPPGL--LNVYVKVNNGPLGNPIWNISG-------- 114
Query: 301 FSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ ++ L ++ + + V + A ++V
Sbjct: 115 ----------DPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH 160
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 46.6 bits (110), Expect = 6e-06
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 9/105 (8%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
KP+ + + V+ C PPA I+W+ + + + +
Sbjct: 116 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLS------ 169
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD--ANFTLQVTY 355
G S +L + + D + C E+ + +L V Y
Sbjct: 170 GTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYY 214
Score = 38.1 bits (88), Expect = 0.004
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 15/105 (14%)
Query: 264 VEAVSSENATVVCRVDSIPPAA-----ISWYWNGR----LLLNNTAFSSYQ-----RIFV 309
V ++ T+ C + ++W +G + + T SY
Sbjct: 9 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 68
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYC-VAENRAGIADANFTLQV 353
G R +SL + + D G + C G + L+V
Sbjct: 69 ARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 46.0 bits (108), Expect = 9e-06
Identities = 20/115 (17%), Positives = 30/115 (26%), Gaps = 24/115 (20%)
Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRV----DSIPPAAISWYWNGRLLLNNTAF 301
L KP+I + C + ++ PP SW N L+
Sbjct: 118 LEVTALIEKPDIHFLEPLES---GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETT 174
Query: 302 SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI--ADANFTLQVT 354
S S L LT E C + + + L V+
Sbjct: 175 RS---------------SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214
Score = 33.7 bits (76), Expect = 0.10
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 264 VEAVSSENATVVCRV-------DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYE 316
V V C S PP + W+ +G + ++ ++
Sbjct: 10 VTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQG 69
Query: 317 RKS----------SLVLTNAQESDSGRFYCVAEN 340
R SL + +A+ D+G ++ E
Sbjct: 70 RFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVER 103
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 46.2 bits (110), Expect = 2e-05
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 34/159 (21%)
Query: 52 QVLDMSGNNLQILPKEAFRR--AGLLNLQKLFLARCHIGQIDSGAL---DGL----TNLI 102
++++ L R L +KL L +G D L +
Sbjct: 104 DEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLG--PEACKDLRDLLLHDQCQIT 158
Query: 103 EIDLSDNLLTSI------PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG------LV 150
+ LS+N LT+ L + L+L + ++G L
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGL--AGNTSVTHLSLLHTGLG--DEGLELLAAQLDRNRQLQ 214
Query: 151 KLDMSESRLEHISPEAFTGA----KSLESIKLNGNRLSH 185
+L+++ + + A A SLE + L N LS
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 45.0 bits (106), Expect = 3e-05
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 74 LLNLQKLFLARCHIGQID--SGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA 131
+ L L L+ + ++D S + NL ++LS N L S L L +L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228
Query: 132 RNPISKIEKG-------AFQFVPGLVKLDMSESR 158
N + + + P L++LD E
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP 262
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 45.1 bits (107), Expect = 4e-05
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
+ NL + DLS +T +P+ TF + ++ L + +I AF L
Sbjct: 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG-IEEVLLPVT-LKEIGSQAFLKTSQL 228
Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKL 178
+++ E+ + I EAF + ++KL
Sbjct: 229 KTIEIPEN-VSTIGQEAFRE-SGITTVKL 255
Score = 43.6 bits (103), Expect = 1e-04
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 59 NNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLT 118
+ L+ L ++ F NL+K L++ I ++ + + E+ L L I S
Sbjct: 166 STLEQLKEDIF--YYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLPVTL-KEIGSQA 221
Query: 119 FQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL 178
F L+ + + N +S I + AF+ G+ + + + +I+ AF L +
Sbjct: 222 FLKTSQLKTIEIPEN-VSTIGQEAFRES-GITTVKLPNG-VTNIASRAFYYCPELAEVTT 278
Query: 179 NGN 181
G+
Sbjct: 279 YGS 281
Score = 43.2 bits (102), Expect = 2e-04
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 90 IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL-----ARNPISKIEKGAFQ 144
I A + + + L + + T+I S F L ++ +P + I +
Sbjct: 240 IGQEAFRE-SGITTVKLPNGV-TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297
Query: 145 FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL 178
P L + ++ ES + + G + + + +
Sbjct: 298 GCPKLARFEIPES-IRILGQGLLGGNRKVTQLTI 330
Score = 37.4 bits (87), Expect = 0.012
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 90 IDSGAL-DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
+++G L + L EI L +++ SIP F++ + + + L + I AF
Sbjct: 103 VENGVLTEILKGYNEIILPNSV-KSIPKDAFRNSQ-IAKVVLNEG-LKSIGDMAFFNS-T 158
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS 184
+ ++ + LE + + F +L+ L+ +++
Sbjct: 159 VQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKIT 193
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 43.9 bits (103), Expect = 5e-05
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 264 VEAVSSENATVVCRVDSIPPA--------------AISWYWNGRLLLNNTAFSSYQRIFV 309
+ A+ E+A + C + A ++ Y +G+ + + + R +
Sbjct: 14 ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI 73
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
+ G K++L + N SDSG++ C ++ A L+V G
Sbjct: 74 LRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALG 121
Score = 36.2 bits (83), Expect = 0.020
Identities = 13/117 (11%), Positives = 28/117 (23%), Gaps = 13/117 (11%)
Query: 239 SGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLN 297
K +L + + + + CR P I W N +
Sbjct: 108 YEKALVELKVAALGSDLHVDV-----KGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP 162
Query: 298 NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
G Y +S+++ S C + + ++ +
Sbjct: 163 TVEAPVVAD----GVGLYAVAASVIMRG---SSGEGVSCTIRSSLLGLEKTASISIA 212
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 45.1 bits (105), Expect = 6e-05
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 14/148 (9%)
Query: 196 KLMMIELHDNPWVCDCN--MRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
++ L C + + + A A E S + ++ D C
Sbjct: 473 GVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVC 532
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+ + R A + C S A + W + +L S + + +
Sbjct: 533 PDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE----SPKYGLMGRKN 587
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENR 341
L++ N E DSG + C++E R
Sbjct: 588 -------LLIFNLSEGDSGVYQCLSEER 608
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 43.1 bits (101), Expect = 7e-05
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 264 VEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS--- 319
V + E+ T+ + I+W +N L + + + ++
Sbjct: 8 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT 67
Query: 320 ---SLVLTNAQESDSGRFYCVAENRAGIADANFTLQ 352
SL L+N + D+G + + +++TL+
Sbjct: 68 QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR 103
Score = 35.3 bits (81), Expect = 0.027
Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 23/102 (22%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
++ S+ + ++ + C V+ W G L +
Sbjct: 110 NIQVTNHSQLFQNMTC-ELHLTCSVEDADDNVSFRWEALGNTLSSQ-------------- 154
Query: 313 GEYERKSSLVLTNA-QESDSGRFYCVAENRAGIADANFTLQV 353
+L ++ + S + C+AEN + + Q
Sbjct: 155 ------PNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQK 190
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 43.0 bits (101), Expect = 7e-05
Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 20/77 (25%)
Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
NAT+ C V + Y L + ++
Sbjct: 113 WECSNATLTCEVLEGTDVELKLYQGKEHLRSL--------------------RQKTMSYQ 152
Query: 327 QESDSGRFYCVAENRAG 343
+ F C A NR
Sbjct: 153 WTNLRAPFKCKAVNRVS 169
Score = 34.1 bits (78), Expect = 0.064
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 264 VEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK---- 318
V A++ N T+ + ++W + + ++ +
Sbjct: 9 VNAITGSNVTLTILKHPLASYQRLTWLHTTN---QKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 319 ---SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+L + N + D G +Y + T++V
Sbjct: 66 KTNGALRIYNVSKEDRGDYYMRMLHETED-QWKITMEV 102
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.4 bits (97), Expect = 8e-05
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 264 VEAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER---- 317
+ A + + C + S ++W + A + + I +R
Sbjct: 13 ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQ----LLAICNADLGWHISPSFKDRVAPG 68
Query: 318 -KSSLVLTNAQESDSGRFYC-VAENRAGIADANFTLQV 353
L L + +D+G ++C G L+V
Sbjct: 69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 41.3 bits (96), Expect = 1e-04
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 5/112 (4%)
Query: 244 SDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL--NNTAF 301
AD + + + + V+ + C+V +++ W + L
Sbjct: 28 DKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRA 87
Query: 302 SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
RI ++ +E S+ ++N +D G + C + A + V
Sbjct: 88 LRDNRIQLVTSTPHE--LSISISNVALADEGEYTCSI-FTMPVRTAKSLVTV 136
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 42.2 bits (98), Expect = 3e-04
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCR-VDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P + + ++ ++ T+ C V+ A + W S R +
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAG-----SHPSRWAGMG- 59
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENR 341
L+L + Q DSG + C R
Sbjct: 60 ------RRLLLRSVQLHDSGNYSCYRAGR 82
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 39.6 bits (92), Expect = 4e-04
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 22/108 (20%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYW-----------------NGRLLLNNTAFSSYQR 306
V+ ++ T+ C + + W NG + + S YQ
Sbjct: 7 VQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRN-SRYQL 65
Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
I +G SL + N D G + CV E ++ L+V
Sbjct: 66 KGNISEGNV----SLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 40.3 bits (94), Expect = 6e-04
Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 20/88 (22%)
Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
NAT+ C V + Y L + ++
Sbjct: 103 WECSNATLTCEVLEGTDVELKLYQGKEHLRSL--------------------RQKTMSYQ 142
Query: 327 QESDSGRFYCVAENRAGIADANFTLQVT 354
+ F C A NR +
Sbjct: 143 WTNLRAPFKCKAVNRVSQESEMEVVNCP 170
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 40.8 bits (95), Expect = 7e-04
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 14/99 (14%)
Query: 270 ENATVVCRVDSIPPA-----AISWYW----NGRLLL-----NNTAFSSYQRIFVIEQGEY 315
+N T+ C + P I+W+W + + + + V
Sbjct: 19 DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLK 78
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+SL L Q ++G + C A L+V
Sbjct: 79 SGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV 117
Score = 33.5 bits (76), Expect = 0.13
Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 6/113 (5%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAI--SWYWNGRLLLNNTAFSSYQRIFVIE 311
P R+ V +E +C P AI +W + + S
Sbjct: 119 SPASRLLLDQVGMKENE-DKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTI 177
Query: 312 Q---GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLP 361
+ G + S L L ++QE + CV + + +T L
Sbjct: 178 KNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLS 230
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 14/108 (12%)
Query: 247 HADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQR 306
+ + + V + + C ++S A SW + S +
Sbjct: 493 PHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVE------QSCEP 545
Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVA-ENRAGIADANFTLQV 353
L + N G ++C A E ++ L
Sbjct: 546 GHQSPNC------ILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLP 587
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 39.2 bits (91), Expect = 0.001
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 14/109 (12%)
Query: 264 VEAVSSENATVVCR----VDSIPPAAISWYWNGRLLL-----NNTAFSSYQ-RIFVIEQG 313
V E AT+ C V+ + I W +++L + + Y+ R
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPF 362
S+V+ + SD G + CV A L V F
Sbjct: 64 NL----SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF 108
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 37.7 bits (87), Expect = 0.002
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLL----LNNTAFSSYQRIFVIEQGEYERKS 319
V+ E+A + +I W+ NG L R + ++G +
Sbjct: 18 VQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRIEQKG---LQH 72
Query: 320 SLVLTNAQESDSGRFYCV 337
L+L + DSG
Sbjct: 73 RLILHAVKHQDSGALVGF 90
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 37.6 bits (87), Expect = 0.002
Identities = 9/85 (10%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 264 VEAVSSENATVVCRVDS----IPPAAISWYW---NGRLLLNNTAFSSYQRI--FVIEQGE 314
+ + +A + C ++ + +++W+ + N R+ +
Sbjct: 17 IRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 315 YERKSSLVLTNAQESDSGRFYCVAE 339
++ ++ L + + + D+ + C E
Sbjct: 77 HDHQAELHIRDVRGHDASIYVCRVE 101
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 37.2 bits (86), Expect = 0.002
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 15/109 (13%)
Query: 259 MDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQ---RIFVIEQ 312
MD + +NA + C + W T + +
Sbjct: 1 MDG--YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKS 58
Query: 313 GEY-------ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
Y + SL++ N D G + C + + D L++
Sbjct: 59 SRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLD 107
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 38.3 bits (90), Expect = 0.003
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 265 EAVSSENATVVCRV-DSIPPAAISWYWNGRLLLN---NTAFSSYQRIFVIEQGEYERKSS 320
+ V++ T+VC P ++W +G N+ Y S+
Sbjct: 125 DLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSA-----DCTYNLSST 179
Query: 321 LVLTNAQESDSGRFYCVA 338
L LT+ + + + C
Sbjct: 180 LTLTSTEYNSHKEYTCKV 197
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 36.9 bits (85), Expect = 0.003
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYW----------NGRLLLNNTAFSSYQRI--FVIE 311
+ + T+ C S + S W N LL + ++ + +
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ SL ++N DSG + C E D +++
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLE 108
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 37.7 bits (88), Expect = 0.005
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E +S+ AT+VC + P + W +G + + + +Y S L
Sbjct: 126 EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSK---QSNNKYMASSYLT 182
Query: 323 LTNAQESDSGRFYCVA 338
LT + C
Sbjct: 183 LTARAWERHSSYSCQV 198
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 36.5 bits (84), Expect = 0.005
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 19/110 (17%)
Query: 264 VEAVSSENATVVCRVDSIPP----AAISWYWNGRLLLNNTAFSSYQ--RIFVIEQGEYE- 316
V T+ C S + +W + + + Y + ++ E G ++
Sbjct: 9 VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKE 68
Query: 317 ----------RKSSLVLTNAQESDSGRFYCVAENRAGIAD--ANFTLQVT 354
+ S+V+ N SD+G F C +N I + TL V
Sbjct: 69 RIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 38.8 bits (90), Expect = 0.005
Identities = 18/155 (11%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 76 NLQKLFLARCHIGQIDSGAL----DGLTNLIEIDLSDNLLTSIPSLTFQSV-------RF 124
++ L + + D L T+L ++ +T ++ + + R
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY---MTEFAKISPKDLETIARNCRS 221
Query: 125 LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESI-KLNGNRL 183
L + + I ++ G F+ L + + PE + + +L + +
Sbjct: 222 LVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280
Query: 184 SHFPVRSVEPLL-KLMMIELHDNPWVCDCNMRSIK 217
+ + P ++ ++L + + I+
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315
Score = 29.9 bits (67), Expect = 2.7
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 76 NLQKLFLARCHIGQIDSGA---LDGLTNLIEIDLSDNLLT--SIPSLTFQSVRFLRDLNL 130
N++ + L D G G NL ++++ + +I + + LR L +
Sbjct: 464 NVRWMLLGYVGES--DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA-VTKLPSLRYLWV 520
Query: 131 ARNPIS 136
S
Sbjct: 521 QGYRAS 526
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 37.4 bits (86), Expect = 0.005
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 14/91 (15%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRIFVI 310
+ E+ + EN T+ CRV P A ++ + L+ + F
Sbjct: 91 RVELMPLPPWQPV--GENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS--------FAG 140
Query: 311 EQGEYERKSSLVLTNAQESDSGRFY-CVAEN 340
E A+ D G + C AE
Sbjct: 141 EPPRARGAVLTATVLARREDHGANFSCRAEL 171
Score = 31.6 bits (71), Expect = 0.46
Identities = 9/103 (8%), Positives = 20/103 (19%), Gaps = 20/103 (19%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISW--YWNGRLLLNNTAFSSYQRIFVIEQG 313
+ R + + C + P + + Q
Sbjct: 4 WADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQ-------- 55
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
L + +E + C A ++ R
Sbjct: 56 ---------LVDIRE-PETQPVCFFRCARRTLQARGLIRTFQR 88
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 36.0 bits (83), Expect = 0.006
Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 19/106 (17%)
Query: 264 VEAVSSENATVVCRVD-SIPPAAISWY--------------WNGRLLLNNTAFSSYQRIF 308
V+ V T+ C W W + S Y
Sbjct: 7 VKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKG 66
Query: 309 VIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
I +G+ SL + N+ ESDSG + C E D T +
Sbjct: 67 HISEGDV----SLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQ 108
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 36.5 bits (84), Expect = 0.006
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 22/112 (19%)
Query: 264 VEAVSSENATVVCRVDSIP--------PAAISWYWNGR-------LLLNNTA---FSSYQ 305
V V C S P P W+ G + NN A +
Sbjct: 16 VTVQEGMCVHVRCSF-SYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETR 74
Query: 306 RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN---RAGIADANFTLQVT 354
F + + +L + +A+ SD+GR++ E + ++ VT
Sbjct: 75 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT 126
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 36.1 bits (83), Expect = 0.007
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 14/86 (16%)
Query: 264 VEAVSSENATVVCRVD---SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYE-RKS 319
V + + C D + W + T F I+Q +Y R
Sbjct: 11 VTGTWKGDVKIQCIYDPLRGYRQVLVKWLV-RHGSDSVTIFLRDSTGDHIQQAKYRGRLK 69
Query: 320 ---------SLVLTNAQESDSGRFYC 336
SL + Q D + C
Sbjct: 70 VSHKVPGDVSLQINTLQMDDRNHYTC 95
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 38.0 bits (88), Expect = 0.007
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 265 EAVSSENATVVCRVDSIPPAAI--SWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
A + C P I W+ NG L + V E Y S+
Sbjct: 128 RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP----VGESVSYSIHSTAK 183
Query: 323 LTNAQESDSGRFYCVAENRAG 343
+ +E + C +
Sbjct: 184 VVLTREDVHSQVICEVAHVTL 204
Score = 35.7 bits (82), Expect = 0.037
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 265 EAVSSENATVVCRVDSIPPAAI--SWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+ V C+V P + +W NG + TA + + + G Y S L+
Sbjct: 231 PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTEN----KDGTYNWMSWLL 286
Query: 323 LTNAQESDSGRFYCVAENRA 342
+ + D + C E+
Sbjct: 287 VNVSAHRDDVKLTCQVEHDG 306
Score = 33.4 bits (76), Expect = 0.19
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYWN---GRLLLNNTAFSSYQRIFVIE--QGEYER 317
V + E+A + C V IP I W+ R L+ N + R+ +
Sbjct: 13 VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENM 72
Query: 318 KSSLVLTNAQESDSGRFYCV 337
S+ ++N +D+G +YCV
Sbjct: 73 DFSISISNITPADAGTYYCV 92
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 37.5 bits (86), Expect = 0.008
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 17/93 (18%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRIFVI 310
+ E+ + +N T+ C+V+ P A + + L A
Sbjct: 88 RVELAPLPSWQPV--GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE------- 138
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
+ + + ++ F C E
Sbjct: 139 -----PAEVTTTVLVRRDHHGANFSCRTELDLR 166
Score = 33.3 bits (75), Expect = 0.19
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
TVVC +D + P + + L L + V + + V A++
Sbjct: 204 TQGTVVCSLDGLFPVSEAQVH---LALGDQR----LNPTVTYGNDSFSAKASVSVTAEDE 256
Query: 330 DSGRFYCVAENRAGIADANFTLQVT 354
+ R C + T+ +
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVTIY 281
Score = 30.2 bits (67), Expect = 2.0
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 16/101 (15%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
+ + V + V C P + + ++ G
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIET------------PLPKKELLLPGN- 47
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ V + + + C + G + A L V +
Sbjct: 48 ---NRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT 85
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 35.2 bits (81), Expect = 0.011
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 264 VEAVSSENATVVCRV------DSIPPAAISWYWNGR-----LLLNNTA---FSSYQRIFV 309
V+ +S + C WY++ ++ + ++
Sbjct: 10 VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAE 69
Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAEN 340
+ + +L+L + + DSG + E
Sbjct: 70 LMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI 100
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 36.0 bits (82), Expect = 0.018
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 23/97 (23%)
Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
+ Y ++S + + C +DS + W NG+ L + + V++
Sbjct: 5 NIEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK-----HDKHLVLQDF------ 51
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
++ DSG + C ++ N L + R
Sbjct: 52 ------SEVEDSGYYVCYTPA----SNKNTYLYLKAR 78
Score = 32.9 bits (74), Expect = 0.19
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
K++ L N + G + C LQV YR
Sbjct: 150 ATKNTWNLGNNAKDPRGTYQCQGAKETS-----NPLQVYYR 185
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 34.9 bits (80), Expect = 0.019
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 260 DSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLL-------NNTAFSSYQ-RIFVI 310
++ VS N T+ ++W++ + + S ++ R+ +
Sbjct: 10 HLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD 69
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA-DANFTLQVTYRGVGLPFL 363
Q +L ++ Q+ D+ + + G + LQV V P +
Sbjct: 70 PQS-----GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV-LDPVPKPVI 117
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 36.7 bits (85), Expect = 0.019
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 265 EAVSSENATVVCRV-DSIP-PAAISWYWNGRLLLNN--TAFSSYQRIFVIEQGEYERKSS 320
E + + AT+VC + D P ++W +G + T S Q +Y S
Sbjct: 125 EELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQS-----NNKYAASSY 179
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
L LT Q + C + +
Sbjct: 180 LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE 212
Score = 30.6 bits (69), Expect = 1.6
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 269 SENATVVCRVDSIPPAA----ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
S V C V + +WY +G + N Q+ Y S L +
Sbjct: 334 SRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQ----YNSTYRVVSVLTVL 389
Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ D + C N+A A T+
Sbjct: 390 HQNWLDGKEYKCKVSNKALPAPIEKTISKA 419
Score = 29.8 bits (67), Expect = 2.6
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 269 SENATVVCRVDSIPPAAISWYW--NGRLL-----LNNTAFSSYQRIFVIEQGEYERKSSL 321
+ T+ C S ++WY G + S F + +SL
Sbjct: 15 GQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGT--SASL 72
Query: 322 VLTNAQESDSGRFYCVAENRAGIAD 346
++ + D +YC + N + +
Sbjct: 73 AISGLEAEDESDYYCASWNSSDNSY 97
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 34.4 bits (79), Expect = 0.020
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 264 VEAVSSENATVVCRVDSIPPAA-----ISWYWNGR-------LLLNNTAFSSYQRIFVI- 310
V ++ T+ C + ++W +G ++S +R+ +
Sbjct: 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69
Query: 311 -EQGEYERKSSLVLTNAQESDSGRFYC-VAENRAGIADANFTLQV 353
G R +SL + + D G + C G + L+V
Sbjct: 70 ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 34.4 bits (78), Expect = 0.020
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 13/95 (13%)
Query: 250 DFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFV 309
D + + Y ++S + C I W N + + + +
Sbjct: 2 DGNEEMGGITQTPYKVSISGTTVILTCPQYPGSE--ILWQHNDKNIGGDEDDKNIG---- 55
Query: 310 IEQGEYERKSSLVLTNAQE-SDSGRFYCVAENRAG 343
+ L L E SG + C
Sbjct: 56 ------SDEDHLSLKEFSELEQSGYYVCYPRGSKP 84
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 36.0 bits (83), Expect = 0.023
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLN--NTAFSSYQRIFVIEQGEYERKSS 320
E ++ AT+VC P +SW+ NG+ + + T + + Y S
Sbjct: 135 EISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSR 194
Query: 321 LVLTNAQ-ESDSGRFYCVAENRAGIADANFT 350
L ++ ++ F C + + +T
Sbjct: 195 LRVSATFWQNPRNHFRCQVQFYGLSENDEWT 225
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 34.1 bits (78), Expect = 0.024
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 261 SRYVEAVSSENATVVCRVD-SIPPAAISWY----WNGRLLLNNTAFSSYQRI--FVIEQG 313
+R V + +V C + W + T S+ +R I
Sbjct: 3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDS 62
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAE--NRAGIADANFTLQVT 354
++ L N E D+G ++C + D ++V+
Sbjct: 63 PANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVS 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 36.4 bits (84), Expect = 0.024
Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 72 AGLLNLQKLFLARCHIGQIDSGAL----DGLTNLIEIDLSD--NLLT--SIPSLTFQSVR 123
A NL++L L + + L D T+L+ +++S + ++ ++ L
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV-TRCP 211
Query: 124 FLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRL 183
L+ L L R + Q P L +L + P+ ++G S L
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTG-GYTAEVRPDVYSGLSVALSGCKELRCL 270
Query: 184 SHFPVRSVEPLLKL 197
S F L +
Sbjct: 271 SGFWDAVPAYLPAV 284
Score = 28.7 bits (64), Expect = 6.1
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 28/113 (24%)
Query: 73 GLLNLQKLFLARCHIGQIDSG---ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN 129
G +L+KL + C D L + + +S S++F + + L
Sbjct: 479 GCDSLRKLEIRDCPF--GDKALLANASKLETMRSLWMSSC------SVSFGACKLLG--- 527
Query: 130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR 182
Q +P L + E PE+ + + G R
Sbjct: 528 --------------QKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPR 566
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 36.1 bits (82), Expect = 0.029
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 52 QVLDMSGNNLQILPKEAFRRAGLL-NLQKLFLARCHIGQIDSGA------LDGLTNLIEI 104
+ L + Q + E F + +L L+ + ++ + D GA +D + +L I
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT--DEGARLLLDHVDKIKHLKFI 312
Query: 105 DLSDNLLT 112
++ N L+
Sbjct: 313 NMKYNYLS 320
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 34.4 bits (78), Expect = 0.029
Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 27/124 (21%)
Query: 264 VEAVSSENATVVCRVDSIPPAA---ISW----------------YWNGRLLLNNTAFSSY 304
VE + + C ISW Y L SY
Sbjct: 14 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSY 73
Query: 305 QRIFVIEQG----EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGL 360
+ F G +L LT+ D GR++C + + + + V L
Sbjct: 74 KESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE----FGLDAKSVVL 129
Query: 361 PFLG 364
G
Sbjct: 130 KVTG 133
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 34.1 bits (78), Expect = 0.029
Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 264 VEAVSSENATVVCRVDS-IPPAAISWYWNGRLLL-------NNTAFSSYQRIFVIEQGEY 315
V + + TV C S W + + + I+ +
Sbjct: 12 VNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQK 71
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
R ++ + + ++D+ ++C E + +
Sbjct: 72 NRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTID 110
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen,
allergen, antimic bacteriolytic enzyme, glycosidase,
hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A
1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A
1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A
1rih_L 1p2c_A ...
Length = 213
Score = 35.3 bits (82), Expect = 0.031
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 265 EAVSSENATVVCRV-DSIPPAA-ISWYWNGRLLLNN--TAFSSYQRIFVIEQGEYERKSS 320
E ++S A+VVC + + P + W +G N +++ + Y S+
Sbjct: 123 EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS----KDSTYSMSST 178
Query: 321 LVLTNAQESDSGRFYCVA 338
L LT + + C A
Sbjct: 179 LTLTKDEYERHNSYTCEA 196
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 35.3 bits (82), Expect = 0.031
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNN--TAFSSYQRIFVIEQGEYERKSS 320
E + + AT+VC V+ P A ++W NG + + T S Q Y S
Sbjct: 124 EELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQG------QNYMTSSY 177
Query: 321 LVLTNAQESDSGRFYCVA 338
L LT Q R C
Sbjct: 178 LSLTADQWKSHNRVSCQV 195
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 33.8 bits (78), Expect = 0.038
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGR---LLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
++ + C + + + W+ G L + R+ E R S+L +
Sbjct: 17 TDSALRCNFTTTMRS-VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHI 75
Query: 324 TNAQESDSGRFYCVAENRAG 343
+AQ DSG ++C AE +G
Sbjct: 76 RDAQLEDSGTYFCAAEASSG 95
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 35.4 bits (81), Expect = 0.038
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLN--NTAFSSYQRIFVIEQGEYERKSS 320
E ++ AT+VC P +SW+ NG+ + + T + + Y S
Sbjct: 160 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSR 219
Query: 321 LVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQVT 354
L ++ ++ F C + + +T
Sbjct: 220 LRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRA 254
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 34.1 bits (78), Expect = 0.038
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 22/103 (21%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--------NGRLLLNNTAFSSYQR 306
PE+R+ + ++A + +VC V SW + ++ +S
Sbjct: 5 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVV---YMASSHN 61
Query: 307 IFVIEQGEYERKS-----------SLVLTNAQESDSGRFYCVA 338
++ K L L + + G ++C
Sbjct: 62 KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSV 104
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.8 bits (77), Expect = 0.039
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC-VAENRAGIADANFTLQV 353
+F S ++ + + ++L L D G + C A G L+V
Sbjct: 73 LSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 35.1 bits (81), Expect = 0.042
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E + + AT+VC + P ++W + + ++ + +Y S L
Sbjct: 122 EELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ---SNNKYAASSYLS 178
Query: 323 LTNAQESDSGRFYCVA 338
LT Q + C
Sbjct: 179 LTPEQWKSHRSYSCQV 194
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens}
PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A
3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L
3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Length = 216
Score = 34.9 bits (81), Expect = 0.044
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNN--TAFSSYQRIFVIEQGEYERKSS 320
E + S A+VVC +++ P W + L N + + + Y S+
Sbjct: 125 EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDS----KDSTYSLSST 180
Query: 321 LVLTNAQESDSGRFYCVA 338
L L+ A + C
Sbjct: 181 LTLSKADYEKHKVYACEV 198
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 34.8 bits (80), Expect = 0.046
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 14/97 (14%)
Query: 245 DLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSY 304
+L KP + D V + EN ++ C IP S G L L +
Sbjct: 97 ELVVTGLYGKPFLSADRGLV-LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEH 155
Query: 305 QRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR 341
F + + SG + C
Sbjct: 156 PANFSL-------------GPVDLNVSGIYRCYGWYN 179
Score = 31.0 bits (70), Expect = 0.81
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 12/91 (13%)
Query: 254 KPEIRMDSRYVEAVSS-ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
P I S V + + + C+ S+Y+ I +
Sbjct: 9 MPFISAKSSPV--IPLDGSVKIQCQA-IREAYLTQLMIIKN--------STYREIGRRLK 57
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
E V+ + + +GR+ C
Sbjct: 58 FWNETDPEFVIDHMDANKAGRYQCQYRIGHY 88
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 34.9 bits (80), Expect = 0.049
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLV 322
E +S ++ ++ C V P IS W N +Y+ + G Y S L
Sbjct: 128 EQLSRKDVSLTCLVVGFNPGDISVEW----TSNGHTEENYKDTAPVLDSDGSYFIYSKLN 183
Query: 323 LTNAQESDSGRFYCVAENRA 342
+ ++ + F C +
Sbjct: 184 MKTSKWEKTDSFSCNVRHEG 203
Score = 28.7 bits (64), Expect = 4.3
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 8/79 (10%)
Query: 268 SSENATVVCRVDSIPP----AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
S V C V + ISW+ N + + + S+L +
Sbjct: 25 ISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHRED----YNSTIRVVSTLPI 80
Query: 324 TNAQESDSGRFYCVAENRA 342
+ F C N+
Sbjct: 81 QHQDWMSGKEFKCKVNNKD 99
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 34.5 bits (80), Expect = 0.051
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E +++ A+VVC +++ P IS W +G + S + Y S+L
Sbjct: 122 EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSK--DSTYSMSSTLS 179
Query: 323 LTNAQESDSGRFYCVA 338
LT A + C
Sbjct: 180 LTKADYESHNLYTCEV 195
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 34.7 bits (80), Expect = 0.055
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIE 311
P + + E + + AT+VC + P ++W +G + + +
Sbjct: 135 APSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSK---QS 191
Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVA 338
+Y S L LT Q + C
Sbjct: 192 NNKYAASSYLSLTPEQWKSHRSYSCQV 218
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 33.0 bits (75), Expect = 0.059
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 286 ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK-------SSLVLTNAQESDSGRFYCV- 337
I+W + S + + Y + +LV+++ + D+G +
Sbjct: 32 IAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADI 91
Query: 338 -AENRAGIADANFTLQVTYR 356
+ + LQ+ YR
Sbjct: 92 NTQADPYTTTKRYNLQI-YR 110
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 34.9 bits (80), Expect = 0.061
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 265 EAVSSENATVVCRVDSI--PPAAISWYWNGRLLLN--NTAFSSYQRIFVIEQGEYERKSS 320
E ++ AT+VC +SW+ NG+ + + +T + + Y S
Sbjct: 161 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSR 220
Query: 321 LVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQ 352
L ++ ++ F C + + +T
Sbjct: 221 LRVSATFWQNPRNHFRCQVQFYGLSENDEWTQD 253
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 34.7 bits (80), Expect = 0.061
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE----YERKSS 320
E ++S A+VVC +++ P I+ W ++ + + +Q Y S+
Sbjct: 165 EQLTSGGASVVCFLNNFYPKDINVKWK----IDGSERQNGVLNSWTDQDSKDSTYSMSST 220
Query: 321 LVLTNAQESDSGRFYC 336
L LT + + C
Sbjct: 221 LTLTKDEYERHNSYTC 236
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 34.6 bits (79), Expect = 0.064
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLN--NTAFSSYQRIFVIEQGEYERKSS 320
E ++ AT+VC P +SW+ NG+ + + T + + Y S
Sbjct: 157 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSR 216
Query: 321 LVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQ 352
L ++ ++ F C + + +T
Sbjct: 217 LRVSATFWQNPRNHFRCQVQFYGLSENDEWTQD 249
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 34.3 bits (79), Expect = 0.074
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E + + AT+VC ++ P A++W +G + + + +Y S L
Sbjct: 125 EELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK----SDSKYMATSYLT 180
Query: 323 LTNAQESDSGRFYCVA 338
+T F C
Sbjct: 181 MTADAWKSRNTFICKV 196
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 34.1 bits (78), Expect = 0.081
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLV 322
+ ++ ++ C V P+ I+ W N ++Y+ + G + S L
Sbjct: 120 DELTKNQVSLTCLVKGFYPSDIAVEW----ESNGQPENNYKTTPPVLDSDGSFFLYSKLT 175
Query: 323 LTNAQESDSGRFYCVAENRA 342
+ ++ F C + A
Sbjct: 176 VDKSRWQQGNVFSCSVMHEA 195
Score = 32.6 bits (74), Expect = 0.24
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 264 VEAVSSENATVVCRVDSIPP----AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
+ S V C V + +WY +G + N + + Y S
Sbjct: 13 DTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN----AKTKPREEQYNSTYRVVS 68
Query: 320 SLVLTNAQESDSGRFYCVAEN 340
L + + + + C N
Sbjct: 69 VLTVLHQDWLNGKEYKCKVSN 89
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 34.2 bits (79), Expect = 0.082
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ----GEYERKSS 320
E ++S A+VVC +++ P I+ W ++ + + +Q Y S+
Sbjct: 145 EQLTSGGASVVCFLNNFYPKDINVKWK----IDGSERQNGVLNSWTDQDSKDSTYSMSST 200
Query: 321 LVLTNAQESDSGRFYCVA 338
L LT + + C A
Sbjct: 201 LTLTKDEYERHNSYTCEA 218
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 34.1 bits (78), Expect = 0.083
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 8/78 (10%)
Query: 269 SENATVVCRVDSIPP----AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
V C V I SW+ + + A + S L +
Sbjct: 32 GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHT--AQTHAPEKQ--SNSTLRSVSELPIV 87
Query: 325 NAQESDSGRFYCVAENRA 342
+ F C + A
Sbjct: 88 ERDWLNGKTFKCKVNSGA 105
Score = 32.2 bits (73), Expect = 0.36
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLV 322
E ++ ++ C V P I W +N +Y+ G Y S L
Sbjct: 134 EEMTQSQVSITCMVKGFYPPDIYTEW----KMNGQPQENYKNTPPTMDTDGSYFLYSKLN 189
Query: 323 LTNAQESDSGRFYCVAE 339
+ F C
Sbjct: 190 VKKETWQQGNTFTCSVL 206
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 33.7 bits (77), Expect = 0.094
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLV 322
E ++ + ++ C + P I+ W N +Y+ I G Y S L
Sbjct: 120 EQMAKDKVSLTCMITDFFPEDITVEW----ESNGQPAENYKNTQPIMDTDGSYFVYSKLN 175
Query: 323 LTNAQESDSGRFYCVAENRA 342
+ + F C +
Sbjct: 176 VQKSNWEAGNTFTCSVLHEG 195
Score = 32.1 bits (73), Expect = 0.29
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 269 SENATVVCRVDSIPP----AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
+ V C V I SW+ + + + + + S L +
Sbjct: 18 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHT----AQTKPREEQFNSTFRSVSELPIM 73
Query: 325 NAQESDSGRFYCVAENRA 342
+ + F C + A
Sbjct: 74 HQDWLNGKEFKCRVNSAA 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 34.5 bits (79), Expect = 0.095
Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 24/197 (12%)
Query: 38 FLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLL-NLQKLFLARCHIGQIDSGALD 96
+ P A +V M +N I LQ L L + L
Sbjct: 80 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139
Query: 97 GLTNLIEIDLS------DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV---- 146
+NL+ ++LS + L ++ S L +LNL+ + Q
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTL----LSSCSRLDELNLSWCF--DFTEKHVQVAVAHV 193
Query: 147 -PGLVKLDMSESRLEHISPEAF----TGAKSLESIKLNG-NRLSHFPVRSVEPLLKLMMI 200
+ +L++S R +++ +L + L+ L + + L L +
Sbjct: 194 SETITQLNLSGYR-KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252
Query: 201 ELHDNPWVCDCNMRSIK 217
L + + +
Sbjct: 253 SLSRCYDIIPETLLELG 269
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon,
T-cell receptor, signalling, IMMU; 2.50A {Cricetulus
migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Length = 213
Score = 33.7 bits (78), Expect = 0.096
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNN---TAFSSYQRIFVIEQGEYERKS 319
E + + +AT+VC V++ P + W +G + + + Y S
Sbjct: 123 EQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSK-----DSTYSLSS 177
Query: 320 SLVLTNAQESDSGRFYCVA 338
+L LT A + C
Sbjct: 178 TLSLTKADYERHNLYTCEV 196
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 32.6 bits (74), Expect = 0.100
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYW------NGRLLL---NNTAFSSYQRIFVIEQGE 314
+++V+ + TV C+ W + L + ++ F I
Sbjct: 20 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP 79
Query: 315 YERKSSLVLTNAQESDSGRFYCVAE---NRAGIADANFTLQVT 354
++ +T+ +E DSG ++C + + F L V+
Sbjct: 80 DAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVVS 122
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 33.1 bits (75), Expect = 0.11
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 22/101 (21%)
Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWY--------WNGRLLLNNTAFSSYQR 306
PE+R+ + ++A + +VC V SW ++ +S
Sbjct: 10 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVV---YMASSHN 66
Query: 307 IFVIEQGEYERKS-----------SLVLTNAQESDSGRFYC 336
++ K L L + + G ++C
Sbjct: 67 KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFC 107
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 32.1 bits (73), Expect = 0.12
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 17/107 (15%)
Query: 264 VEAVSSENATVVCRVDSIPPAA-----ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK 318
++A +E A + C+ + + + W L+LN + ++ + R
Sbjct: 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLN-EVYLGKEKFDSVHSKYMGRT 62
Query: 319 S------SLVLTNAQESDSGRFYCVAENR-----AGIADANFTLQVT 354
S +L L N Q D G + C+ ++ I N L V
Sbjct: 63 SFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 33.7 bits (77), Expect = 0.13
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNN--TAFSSYQRIFVIEQGEYERKSS 320
E ++ AT+VC P +SW+ NG+ + + T + + Y S
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSR 194
Query: 321 LVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQVT 354
L ++ ++ F C + + +T
Sbjct: 195 LRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRA 229
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 34.2 bits (78), Expect = 0.14
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 22/99 (22%)
Query: 270 ENATVVCRV-------DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
N T VC + + I W N + Y I SS+
Sbjct: 19 SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK----EQYTII-------NRTASSVT 67
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLP 361
T+ + + C + + + + GLP
Sbjct: 68 FTDIAS-LNIQLTCNILTFGQLEQNVYGITII---SGLP 102
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 32.9 bits (75), Expect = 0.20
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 9/83 (10%)
Query: 264 VEAVSSENATVVCRVDSIPP---AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
+ + A + C + + +W + +A + G Y S
Sbjct: 14 EDLLLGSEANLTCTLTGLRDASGVTFTWTPSS----GKSAVQGPPERDL--CGCYSVSSV 67
Query: 321 LVLTNAQESDSGRFYCVAENRAG 343
L + F C A
Sbjct: 68 LPGCAEPWNHGKTFTCTAAYPES 90
Score = 28.3 bits (63), Expect = 5.3
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 265 EAVSSENATVVCRVDSIPPAAI--SWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSL 321
E +E T+ C P + W + L + R + + S L
Sbjct: 118 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSIL 177
Query: 322 VLTNAQESDSGRFYCVA 338
+ F C+
Sbjct: 178 RVAAEDWKKGDTFSCMV 194
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 31.8 bits (72), Expect = 0.20
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 10/101 (9%)
Query: 264 VEAVSSENATVVCRVDSIPPA---AISWY----WNGRLLL---NNTAFSSYQRIFVIEQG 313
V +V + ++ C W G + L S Y +
Sbjct: 10 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF 69
Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ + + DSGR+ C + + +L+V
Sbjct: 70 PENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 32.7 bits (74), Expect = 0.20
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLL-----NNTAFSSYQRIFVIEQGEYERKSSL 321
EN + C + W+ L ++ + R + +S+L
Sbjct: 16 ENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGR-LNASLDKSSGRSTL 74
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
+ +Q DS + C +G + + T V
Sbjct: 75 YIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIV 111
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 32.7 bits (74), Expect = 0.22
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANF 349
ER S+L + +AQ DSG ++C AE+ F
Sbjct: 67 ERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIF 100
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 32.9 bits (75), Expect = 0.22
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLN--NTAFSSYQRIFVIEQGEYERKSS 320
E ++ AT+VC P +SW+ NG+ + + T + + Y S
Sbjct: 136 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSR 195
Query: 321 LVLTNAQ-ESDSGRFYCVAENRAGIADANFT 350
L ++ ++ F C + + +T
Sbjct: 196 LRVSATFWQNPRNHFRCQVQFYGLSENDEWT 226
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 32.5 bits (74), Expect = 0.24
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 13/121 (10%)
Query: 69 FRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS------DNLLTSIPSLTFQSV 122
+Q + I I ++GL + +I L D L + L
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 123 RFLRDLNLARNP-ISKIEKG--AFQFVPGLVKLDMSE-SRLEHISPEAFTGAKSLESIKL 178
+ ++ + ++ +KG A L L +S+ ++ SL S++L
Sbjct: 115 S-MLEMEIISCGNVT--DKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171
Query: 179 N 179
Sbjct: 172 K 172
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 32.2 bits (73), Expect = 0.28
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRL--LLNNTAFSSYQRIFVIEQGEYERK-SSLVL 323
++ + C + + + W+ G L L + + ER+ S+L +
Sbjct: 17 TDSALRCNFTTTMRS-VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHI 75
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVG 359
+AQ DSG ++C A+ G G
Sbjct: 76 RDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQG 111
Score = 27.6 bits (61), Expect = 8.6
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 9/83 (10%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
+P+ + ++ + V C V P ++ + I + G
Sbjct: 117 EPKSQPPAKPSVFIMKNGTNVACLVKDFYPKEVTISLR----SSKKIVEFDPAIVISPSG 172
Query: 314 EYERKSSLVLTNAQESDSGRFYC 336
+Y + Q DS C
Sbjct: 173 KY-----SAVKLGQYGDSNSVTC 190
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 32.4 bits (73), Expect = 0.30
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLL-----NNTAFSSYQRIFVIEQGEYERKSSL 321
EN + C P + WY L+L + +S R + + + S+L
Sbjct: 17 ENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGR-YSATLDKDAKHSTL 75
Query: 322 VLTNAQESDSGRFYCVAENR 341
+T D+ ++CV +R
Sbjct: 76 HITATLLDDTATYFCVVGDR 95
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 32.7 bits (74), Expect = 0.32
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 268 SSENATVVCRVD--SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
++C V + I+W +G+++ + + +S + E +S L L+
Sbjct: 23 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ----EGELASTQSELTLSQ 78
Query: 326 AQESDSGRFYCVAENRAGIADANFT 350
+ C + + +
Sbjct: 79 KHWLSDRTYTCQVTYQGHTFEDSTK 103
Score = 30.4 bits (68), Expect = 1.6
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 265 EAVSSENATVVCRVDSIPPAAI--SWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSS 320
S + T+ C + + P I W N L + + + + + S
Sbjct: 230 WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPD----ARHSTTQPRKTKGSGFFVFSR 285
Query: 321 LVLTNAQESDSGRFYCVAE 339
L +T A+ F C A
Sbjct: 286 LEVTRAEWEQKDEFICRAV 304
Score = 30.0 bits (67), Expect = 2.0
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 263 YVEAVSSENATVVCRVDSIPPA--AISWYW---NGRLLLNNTAFSSYQRIFVIEQGEYER 317
+ ++ T+ C V + P+ + W +G+ + ++T Q G
Sbjct: 122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQ-----RNGTLTV 176
Query: 318 KSSLVLTNAQESDSGRFYCVAEN 340
S+L + + + C +
Sbjct: 177 TSTLPVGTRDWIEGETYQCRVTH 199
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 32.8 bits (73), Expect = 0.33
Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 20/83 (24%)
Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
+ + E + C D+ I+W + +
Sbjct: 12 ELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVL------------------GSGK 51
Query: 320 SLVLTNAQESDSGRFYCVAENRA 342
+L + + D+G++ C
Sbjct: 52 TLTIQVKEFGDAGQYTCHKGGEV 74
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 32.3 bits (73), Expect = 0.33
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLLNNTAFSSYQRI----FVIEQGEYERKSSLV 322
+N T+ C P + + WY + S + ++SSL
Sbjct: 19 KNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLH 78
Query: 323 LTNAQESDSGRFYCVAENRAGIAD 346
+T +Q SDS + CV +R
Sbjct: 79 ITASQLSDSASYICVVSDRGSTLG 102
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 32.4 bits (74), Expect = 0.34
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE----YERKSS 320
E ++S A+VVC +++ P I+ W ++ + + +Q Y S+
Sbjct: 161 EQLTSGGASVVCFLNNFYPKDINVKW----KIDGSERQNGVLNSWTDQDSKDSTYSMSST 216
Query: 321 LVLTNAQESDSGRFYC 336
L LT + + C
Sbjct: 217 LTLTKDEYERHNSYTC 232
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 30.8 bits (70), Expect = 0.38
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 270 ENATVVCRVD--SIPPAAISWYW----NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
E+ T+ C + S + WY G S R +V + SL +
Sbjct: 16 ESLTINCVLRDASYALGSTCWYRKKSGEGNEESI----SKGGR-YVETVNSGSKSFSLRI 70
Query: 324 TNAQESDSGRFYCVAENRAGIADANF 349
+ D G + C G D
Sbjct: 71 NDLTVEDGGTYRCGLGVAGGYCDYAL 96
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 32.2 bits (72), Expect = 0.38
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 10/87 (11%)
Query: 265 EAVSSENATVVCRVDSIPPA---AISWYW--NGRLLLNNTAFSSYQRIFVIEQGEYE--- 316
A+ + V C + P A+S+ G+ L A + E E
Sbjct: 105 AALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL 164
Query: 317 -RKSSLVLTNAQESDSGR-FYCVAENR 341
R + + YC A R
Sbjct: 165 FRVTERWRLPPLGTPVPPALYCQATMR 191
Score = 30.6 bits (68), Expect = 1.1
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 15/99 (15%)
Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
++ V + + CR+ A + W +T+ + Q
Sbjct: 9 QVEPPEPVVAVALGASRQLTCRLACADRGASVQWR------GLDTSLGAVQSD------- 55
Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+S L + NA S +G CV L V
Sbjct: 56 -TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 31.9 bits (72), Expect = 0.47
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLN--NTAFSSYQRIFVIEQGEYERKSS 320
E ++ AT+VC P +SW+ NG+ + + T + + Y S
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSR 194
Query: 321 LVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQVT 354
L ++ ++ F C + + +T
Sbjct: 195 LRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRA 229
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.50
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 13/39 (33%)
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIK 177
EK A + KL ++ L+ + ++ A +L +IK
Sbjct: 18 EKQALK------KL---QASLKLYADDS---APAL-AIK 43
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 31.3 bits (71), Expect = 0.54
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 14/74 (18%)
Query: 268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
S E T CR+D+ + GR + Q F +
Sbjct: 112 SGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPL-------------GPVT 157
Query: 328 ESDSGRFYCVAENR 341
+ G + C
Sbjct: 158 TAHRGTYRCFGSYN 171
Score = 29.4 bits (66), Expect = 2.7
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 270 ENATVVCRVDSIPPAAI-SWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
+ T+ C+ + A ++ G L + + E K + +
Sbjct: 19 KQVTICCQGN--YGAVEYQLHFEGSLFAVDRP----------KPPERINKVKFYIPDMNS 66
Query: 329 SDSGRFYCVAENRAG 343
+G++ C+
Sbjct: 67 RMAGQYSCIYRVGEL 81
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 31.8 bits (72), Expect = 0.55
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 14/74 (18%)
Query: 268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
S E T CR+D+ + GR + Q F +
Sbjct: 115 SGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPL-------------GPVT 160
Query: 328 ESDSGRFYCVAENR 341
+ G + C
Sbjct: 161 TAHRGTYRCFGSYN 174
Score = 30.3 bits (68), Expect = 1.6
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
+ T+ C+ + A Y L + F+ + + E K + +
Sbjct: 22 KQVTICCQGN--YGAV--EYQ---LHFEGSLFAVDRP----KPPERINKVKFYIPDMNSR 70
Query: 330 DSGRFYCVAENRAGIADANFTLQVT 354
+G++ C+ ++ + L +
Sbjct: 71 MAGQYSCIYRVGELWSEPSNLLDLV 95
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 31.9 bits (72), Expect = 0.59
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 265 EAVSSENATVVCRV--DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+ + AT C V + A ++W G++ +R G + S L
Sbjct: 308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHS---NGSQSQHSRLT 364
Query: 323 LTNAQESDSGR-FYCVAENRA 342
L ++G C + +
Sbjct: 365 LP-RSLWNAGTSVTCTLNHPS 384
Score = 28.4 bits (63), Expect = 7.3
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIF--VIEQGEYERKSSLVLTN 325
+ + C + P +++ W S QR F + + Y SS + T
Sbjct: 149 DNSPVVLACLITGYHPTSVTVTWYMG------TQSQPQRTFPEIQRRDSYYMTSSQLSTP 202
Query: 326 AQESDSGRFYCVAENRAG 343
Q+ G + CV ++ A
Sbjct: 203 LQQWRQGEYKCVVQHTAS 220
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 31.5 bits (72), Expect = 0.60
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 265 EAVSSENATVVCRV-DSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E + AT+VC + + P ++W NG + S+ + E ++ S L
Sbjct: 132 EELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTK----EGNKFMASSFLH 187
Query: 323 LTNAQESDSGRFYC 336
LT+ Q F C
Sbjct: 188 LTSDQWRSHNSFTC 201
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 31.1 bits (70), Expect = 0.66
Identities = 14/79 (17%), Positives = 20/79 (25%), Gaps = 9/79 (11%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLL-----NNTAFSSYQRIFVIEQGEYERKSSL 321
++ C S A+ WY N R E S L
Sbjct: 16 DSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGR-ISATLNTKEGYSYL 74
Query: 322 VLTNAQESDSGRFYCVAEN 340
+ +Q DS + C
Sbjct: 75 YIKGSQPEDSATYLCARNT 93
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 31.4 bits (71), Expect = 0.77
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 9/72 (12%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
E + C D I + G S V + + K++ + +
Sbjct: 134 ERVILQCWSD-IMFEHFFLHKEGI--------SKDPSRLVGQIHDGVSKANFSIGPMMLA 184
Query: 330 DSGRFYCVAENR 341
+G + C
Sbjct: 185 LAGTYRCYGSVT 196
Score = 29.8 bits (67), Expect = 2.7
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 14/72 (19%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
+ T+ C Y R+ + +Q F + + +
Sbjct: 39 GHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQESFNM-------------SPVTTA 84
Query: 330 DSGRFYCVAENR 341
+G + C +
Sbjct: 85 HAGNYTCRGSHP 96
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 31.0 bits (70), Expect = 0.78
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 11/98 (11%)
Query: 245 DLHADDFACKPEIR-MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSS 303
+L KP + S V S N T+ C G
Sbjct: 92 ELVVTGAYIKPTLSAQPSPVVN--SGGNVTLQCDSQV-AFDGFILCKEGE-------DEH 141
Query: 304 YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR 341
Q + ++ + S + C A +
Sbjct: 142 PQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS 179
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 31.4 bits (71), Expect = 0.83
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIF--VIEQGEYERKSSLVL 323
+ S A + C V P ++ WN + A +S F V++ SS+V
Sbjct: 132 STSGGTAALGCLVKDYFPEPVTVSWN------SGALTSGVHTFPAVLQSSGLYSLSSVVT 185
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
+ + + C ++ + ++
Sbjct: 186 VPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC 218
Score = 30.6 bits (69), Expect = 1.5
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 265 EAVSSENATVVCRV-DSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+ ++ ++ C V P A+ W NG+ N G + S +
Sbjct: 253 DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD----SDGSF-FLYSKL 307
Query: 323 LTNAQESDSGRFY-CVAENRA 342
+ G + C + A
Sbjct: 308 TVDKSRWQQGNVFSCSVMHEA 328
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 31.1 bits (70), Expect = 0.84
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLV 322
+ ++ ++ C V P+ I+ W N ++Y+ + G + S L
Sbjct: 141 DELTKNQVSLTCLVKGFYPSDIAVEW----ESNGQPENNYKATPPVLDSDGSFFLYSKLT 196
Query: 323 LTNAQESDSGRFYCVAE 339
+ ++ F C
Sbjct: 197 VDKSRWQQGNVFSCSVM 213
Score = 30.7 bits (69), Expect = 1.2
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 269 SENATVVCRV--DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLVLT 324
S V C V S + + W ++ + + EQ Y S L +
Sbjct: 39 SRTPEVTCVVVDVSHEDPEVKFNWY----VDGVEVHNAKTKPREEQYNSTYRVVSVLTVL 94
Query: 325 NAQESDSGRFYCVAEN 340
+ + + C N
Sbjct: 95 HQDWLNGKEYKCKVSN 110
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 30.6 bits (69), Expect = 0.86
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLLNNTAFSSYQRI----FVIEQGEYERKSSLV 322
E A + C + WY L + F I + E+K SL
Sbjct: 16 ETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLH 75
Query: 323 LTNAQESDSGRFYCVAEN 340
+ ++Q DS ++C A +
Sbjct: 76 IADSQPGDSATYFCAASD 93
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 30.3 bits (68), Expect = 1.3
Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 8/87 (9%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLL----NNTAFSSYQRIFVIEQGEYERKSSLV 322
+ C + + WY R + S L+
Sbjct: 15 AIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRS-KGYSYLL 73
Query: 323 LTNAQESDSGRFYCVAENRAGIADANF 349
L Q DS + C + G F
Sbjct: 74 LKELQMKDSASYLCAVQASGGSYIPTF 100
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 30.7 bits (68), Expect = 1.4
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 14/91 (15%)
Query: 270 ENATVVCRVDSI-----PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
+ T C + P I W L QR+ Q S + L
Sbjct: 16 DPITASCIIKQNCSHLDPEPQILWRLGAELQPG----GRQQRLSDGTQE-----SIITLP 66
Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTY 355
+ + + + + L+ Y
Sbjct: 67 HLNHTQAFLSCSLNWGNSLQILDQVELRAGY 97
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 30.0 bits (67), Expect = 1.5
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANF 349
++ SSL++T ++ +D+ ++C + +G F
Sbjct: 69 KKSSSLLITASRAADTASYFCATDTTSGTYKYIF 102
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 30.6 bits (69), Expect = 1.5
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 14/80 (17%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLL----------NNTAFSSYQRIFVIEQGEYE 316
+A + C + I WY +
Sbjct: 18 SSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGST-R 76
Query: 317 RKSSLVLTNAQESDSGRFYC 336
+ ++L N E+DSG +YC
Sbjct: 77 KNLRMILRNLIENDSGVYYC 96
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 30.4 bits (68), Expect = 1.5
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLN--NTAFSSYQRIFVIEQGEYERKSS 320
E ++ AT+VC P +SW+ NG+ + + +T + + Y S
Sbjct: 134 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSR 193
Query: 321 LVLTNAQ-ESDSGRFYCVA 338
L ++ ++ F C
Sbjct: 194 LRVSATFWQNPRNHFRCQV 212
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 28.9 bits (65), Expect = 1.6
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 265 EAVSS---ENATVVCRVDS-IPPAAISWY----WNGRLLLNNTAFSSYQ----RIFVIEQ 312
E VS + TV CR S W L T S R+ + +
Sbjct: 9 EEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDN 68
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
+ ++ + + + SD+G ++C T+ +
Sbjct: 69 QR-DFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIG 109
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 29.8 bits (67), Expect = 1.7
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 245 DLHADDFACKPEIRMD-SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSS 303
+L KP + S V S ++ T++C+ S P +
Sbjct: 91 ELVMTGAYSKPTLSALPSPLVT--SGKSVTLLCQSRS-PMDTFLLCKERA--------AH 139
Query: 304 YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR 341
E G + ++ ++ G + C + +
Sbjct: 140 PLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHG 177
Score = 29.0 bits (65), Expect = 3.2
Identities = 9/74 (12%), Positives = 20/74 (27%), Gaps = 11/74 (14%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
+ T+ C+ + E + K+ + + E
Sbjct: 20 NSVTIWCQGTL-EAREYRLDKEESPAPWDRQ----------NPLEPKNKARFSIPSMTED 68
Query: 330 DSGRFYCVAENRAG 343
+GR+ C + G
Sbjct: 69 YAGRYRCYYRSPVG 82
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 29.6 bits (66), Expect = 2.1
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLLNNTAFSSYQRI---FVIEQGEYERKSSLVL 323
A++ C WY + FS + F + SL +
Sbjct: 18 GMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHI 77
Query: 324 TNAQESDSGRFYC 336
++Q SDS ++C
Sbjct: 78 RDSQPSDSALYFC 90
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 28.8 bits (65), Expect = 2.1
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 270 ENATVVCR-VDSIPPAAISWYW---NGR--LLLNNTAFSS----YQRIFVIEQGEYERKS 319
T+ C + WY +G L+ ++ + Q +
Sbjct: 16 TTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKP-KSSI 74
Query: 320 SLVLTNAQESDSGRFYCVAENRAG 343
L++T Q DS ++C G
Sbjct: 75 GLIITATQIEDSAVYFCAMRGDYG 98
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 29.7 bits (67), Expect = 2.1
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 20/122 (16%)
Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWY---------WNGRLLLNNTAFSSYQRIFVIE 311
V + + C+ + WY + +
Sbjct: 10 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGF---- 65
Query: 312 QGEYERKSS---LVLTNAQESDSGRFYCVAENRAGIADANF----TLQVTYRGVGLPFLG 364
+ E+ + S L + SDS ++C + + +F L V+ G G G
Sbjct: 66 EAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGG 125
Query: 365 GG 366
G
Sbjct: 126 SG 127
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 29.6 bits (66), Expect = 2.2
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 265 EAVSSENATVVCRVDSIPPAAI--SWYWNGRLL----LNNTAFSSYQRIFVIEQGE---Y 315
E +S T+ C V P I W + R + TA +R G+ +
Sbjct: 129 EELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTF 188
Query: 316 ERKSSLVLTNAQESDSGRFYCVA 338
S + + A+ + F C+A
Sbjct: 189 FVYSKMSVETAKWNGGTVFACMA 211
Score = 29.6 bits (66), Expect = 2.2
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 265 EAVSSENATVVCRV---DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
E S +A + C V S +++W L + G Y S++
Sbjct: 24 ELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHF----NGTYSASSAV 79
Query: 322 VLTNAQESDSGRFYCVAENRA 342
++ RF C ++
Sbjct: 80 PVSTQDWLSGERFTCTVQHEE 100
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 30.2 bits (68), Expect = 2.4
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 268 SSENATVVCRVD--SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLVL 323
S V C V S + + W ++ + + EQ Y S L +
Sbjct: 263 ISRTPEVTCVVVDVSHEDPEVKFNW----YVDGVEVHNAKTKPREEQYNSTYRVVSVLTV 318
Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLP 361
+ + + C N+A A T+ P
Sbjct: 319 LHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREP 356
Score = 29.5 bits (66), Expect = 3.2
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
+ ++ ++ C V P A+ W NG+ N G + S L
Sbjct: 366 DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD----SDGSFFLYSKLT 421
Query: 323 LTNAQESDSG-RFYCVAENRA 342
+ G F C + A
Sbjct: 422 VD-KSRWQQGNVFSCSVMHEA 441
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 28.6 bits (64), Expect = 2.4
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 320 SLVLTNAQESDSGRFYCVAE---NRAGIADANFTLQVT 354
+ + N Q DSG + CV + L VT
Sbjct: 82 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVT 119
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Length = 31
Score = 26.5 bits (58), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 368 INGISLALFFLIILILIIIIYLLIR 392
IN L L F I+LI +I+++LL+R
Sbjct: 3 INTRELFLNFTIVLITVILMWLLVR 27
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 29.2 bits (65), Expect = 2.6
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLLNNTAFSSYQRI----FVIEQGEYERKSSLV 322
+ C S + WY N L +F+ +R F + L
Sbjct: 17 LPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQ 76
Query: 323 LTNAQESDSGRFYCVAENRAG 343
++AQ SDS +YC +
Sbjct: 77 KSSAQLSDSALYYCALFLASS 97
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 29.9 bits (67), Expect = 2.6
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 268 SSENATVVCRV----DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
S + V C V + P ISW+ N + + + S+L +
Sbjct: 254 ISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHRE----DYNSTLRVVSALPI 309
Query: 324 TNAQESDSGRFYCVAENRA 342
+ F C N+
Sbjct: 310 QHQDWMSGKEFKCKVNNKD 328
Score = 29.5 bits (66), Expect = 3.5
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
+ + T+ C V P ++ WN + + S + Q + SS V
Sbjct: 134 GDTTGSSVTLGCLVKGYFPEPVTLTWN-----SGSLSSGVHTFPAVLQSDLYTLSSSVTV 188
Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQV 353
+ S C + A + ++
Sbjct: 189 TSSTWPSQSITCNVAHPASSTKVDKKIEP 217
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 29.9 bits (67), Expect = 2.6
Identities = 12/77 (15%), Positives = 19/77 (24%), Gaps = 3/77 (3%)
Query: 268 SSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
N + C V P +S W+ ++ Y S L L
Sbjct: 140 PDGNVVIACLVQGFFPQEPLSVTWSESGQ--GVTARNFPPSQDASGDLYTTSSQLTLPAT 197
Query: 327 QESDSGRFYCVAENRAG 343
Q C ++
Sbjct: 198 QCLAGKSVTCHVKHYTN 214
Score = 29.1 bits (65), Expect = 4.3
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E +E T+ C P + W + L + R + +S++
Sbjct: 361 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSIL 420
Query: 323 LTNAQESDSG-RFYCVAENRA 342
A++ G F C+ + A
Sbjct: 421 RVAAEDWKKGDTFSCMVGHEA 441
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 28.5 bits (64), Expect = 2.7
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 270 ENATVVCRV-DSIPPAAISWYW---NGRLLLNNTAFSSYQRIFVIEQGEYERKS----SL 321
E+AT+ C + IP I W+ GR L+ N + R+ + E +++ S+
Sbjct: 19 ESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTV--SELTKRNNLDFSI 76
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFT 350
++N +D+G +YCV + D F
Sbjct: 77 SISNITPADAGTYYCVKFRKGSPDDVEFK 105
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT;
1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A*
3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A*
3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A*
3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ...
Length = 903
Score = 29.9 bits (66), Expect = 2.8
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 11/111 (9%)
Query: 486 EPHNDDVLFQNNYWNQNIRQPTNSELGFDSND-KTPIIDGVSIGGELDDNYPPDYGLPIV 544
E + L +++ + N E+ +D + D I E+ G P
Sbjct: 76 EDIGLEALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFD---I--EVT----SPDGFPEP 126
Query: 545 GQGQNELLPNNIHPNA-KTLRVWQRGVPVLPPVNALKRVLSRGSPDEGYQE 594
Q ++ + + + V+ V ++ ++G E
Sbjct: 127 SQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDE 177
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.8 bits (65), Expect = 2.8
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 270 ENATVVCR-VDSIPPAAISWYW---NGRL--LLNNTAFSS----YQRIFVIEQGEYERKS 319
T+ C + WY +G + L+ ++ + + + +
Sbjct: 16 TTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGH-YSLNFQKPKSSI 74
Query: 320 SLVLTNAQESDSGRFYCVAENRAG 343
L++T Q DS ++C G
Sbjct: 75 GLIITATQIEDSAVYFCAMRGDYG 98
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 29.6 bits (66), Expect = 2.8
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
E + C D + + G+ + E + K++ + +
Sbjct: 22 ETVILQCWSD-VRFQHFLLHREGKF--------KDTLHLIGEHHDGVSKANFSIGPMMQD 72
Query: 330 DSGRFYC 336
+G + C
Sbjct: 73 LAGTYRC 79
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 29.2 bits (65), Expect = 2.9
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NGRLLLNNTAFSSYQRI----FVIEQGEYERKSSLV 322
EN TV C S+ + + WY +L T + + + G+ + SSL
Sbjct: 17 ENLTVYCNSSSVFSS-LQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLH 75
Query: 323 LTNAQESDSGRFYCV 337
+T AQ D+G + C
Sbjct: 76 ITAAQPGDTGLYLCA 90
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.9 bits (62), Expect = 3.2
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 264 VEAVSSENATVVCRVDSIPPAAISW----YWNGRLLLNNTAFSS--YQRIFVIEQGEYER 317
++A + V C A G L ++A
Sbjct: 7 LQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGG 66
Query: 318 KSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVT 354
+ + QE D+G + C+ + G +L +
Sbjct: 67 LLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL 104
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 28.3 bits (63), Expect = 3.6
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 320 SLVLTNAQESDSGRFYCVAE---NRAGIADANFTLQVT 354
+ + N Q DSG + CV + L VT
Sbjct: 77 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVT 114
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 29.5 bits (66), Expect = 3.9
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
++ T+ C V P ++ WN L ++ ++ V++ Y SS V +
Sbjct: 133 TNSMVTLGCLVKGYFPEPVTVTWNSGSL--SSGVHTFPA--VLQSDLY-TLSSSVTVPSS 187
Query: 328 ESDSGRFYCVAENRAGIADANFTLQ 352
S C + A + +
Sbjct: 188 PRPSETVTCNVAHPASSTKVDKKIV 212
Score = 28.7 bits (64), Expect = 6.3
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 265 EAVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E ++ + ++ C + P + W +G+ N +++ S +
Sbjct: 347 EQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQP-----IMDTDGSYFVYSKL 401
Query: 323 LTNAQESDSG-RFYCVAENRA 342
++G F C +
Sbjct: 402 NVQKSNWEAGNTFTCSVLHEG 422
Score = 28.3 bits (63), Expect = 7.9
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 268 SSENATVVCRVD--SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE--YERKSSLVL 323
+ V C V S + + W +N + Q EQ + S+L +
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFV----DNVEVHTAQTQPREEQFNSTFRVVSALPI 299
Query: 324 TNAQESDSGRFYCVAENRA 342
+ + F C + A
Sbjct: 300 MHQDWLNGKEFKCRVNSAA 318
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 29.5 bits (66), Expect = 3.9
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ- 312
KPEI + + A S P +SW+ +G+ L+ N + + V EQ
Sbjct: 473 KPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNE-----KGVSVKEQT 527
Query: 313 ------GEYERKSSLVLTNAQESDS-GRFYC 336
G + +S L++T A+ D F C
Sbjct: 528 RRHPETGLFTLQSELMVTPARGGDPRPTFSC 558
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 28.8 bits (64), Expect = 4.1
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 10/77 (12%)
Query: 270 ENATVVCRVDSIPPAAISWYW---NG--RLLL----NNTAFSSYQRIFVIEQGEYERKSS 320
+ + C+ + WY ++LL + +
Sbjct: 25 ASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKS-DSSFH 83
Query: 321 LVLTNAQESDSGRFYCV 337
L + SDS ++C
Sbjct: 84 LRKASVHWSDSAVYFCA 100
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 27.7 bits (62), Expect = 4.6
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 270 ENATVVCRV-DSIPPAAISWYWN------GRLLL---NNTAFSSYQRIFVIEQGEYERKS 319
NAT C + + ++W + + R F I Q
Sbjct: 15 ANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDAR-FQIIQLPNRHDF 73
Query: 320 SLVLTNAQESDSGRFYC 336
+ + + + +DSG + C
Sbjct: 74 HMNILDTRRNDSGIYLC 90
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 28.7 bits (65), Expect = 5.0
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E + S A+VVC +++ P A + W + L N+ S ++ + Y S+L
Sbjct: 146 EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ--DSKDSTYSLSSTLT 203
Query: 323 LTNAQESDSGRFYC 336
L+ A + C
Sbjct: 204 LSKADYEKHKVYAC 217
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 29.0 bits (64), Expect = 5.0
Identities = 13/108 (12%), Positives = 25/108 (23%), Gaps = 9/108 (8%)
Query: 263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK---- 318
+ + C + SW L +SY + K
Sbjct: 277 FAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEA 336
Query: 319 -----SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLP 361
L+ + F A N G + + + +T +
Sbjct: 337 PTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHT 384
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.5 bits (61), Expect = 5.0
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
+L ++N ++ D G Y + R + TL+V
Sbjct: 74 ALHISNVRKEDKGT-YYMRVLRETENELKITLEV 106
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 28.2 bits (63), Expect = 5.1
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 17/98 (17%)
Query: 245 DLHADDFACKPEIRMD-SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSS 303
+L A KP + V S + T+ C+ + Y G
Sbjct: 85 ELVATGVFAKPSLSAQPGPAVS--SGGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPERW 141
Query: 304 YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR 341
Y+ F I + SG + C + +
Sbjct: 142 YRASFPI-------------ITVTAAHSGTYRCYSFSS 166
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 28.7 bits (63), Expect = 5.3
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANF 349
S + N + D+G++ C+ G+ +N+
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNY 253
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 27.8 bits (62), Expect = 5.3
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 270 ENATVVCRV-DSIPPAAISWY----WNGRLLL----NNTAFSSYQRIFVIEQGEYERKSS 320
NAT C + + ++W N N + F I Q
Sbjct: 25 ANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFH 84
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFT----LQVTYRGVGLP 361
+ + + + +DSG + C A + A + L VT R +
Sbjct: 85 MNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILETS 129
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 28.5 bits (63), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAG 343
ER S+L + +AQ DSG ++C AE
Sbjct: 69 ERYSTLHIRDAQLEDSGTYFCAAEASNT 96
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 28.0 bits (62), Expect = 6.9
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 270 ENATVVCRVDSIPPA-AISWYW---NGRLLL-----NNTAFSSYQRIFVIEQGEYERKSS 320
E + C +I I WY + + + + + E + S+
Sbjct: 15 EPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDR---KSST 71
Query: 321 LVLTNAQESDSGRFYC 336
L+L A D+ +YC
Sbjct: 72 LILHRATLRDAAVYYC 87
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 28.2 bits (63), Expect = 7.2
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYW----NG-RLLL--NNTAFSSYQRIFVIEQGE 314
+ + E A + C ++ WY G LL+ + + F I +
Sbjct: 135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK 194
Query: 315 YERKSSLVLTNAQESDSGRFYC 336
E+K SL + ++Q DS ++C
Sbjct: 195 REKKLSLHIADSQPGDSATYFC 216
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.0 bits (62), Expect = 8.4
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
E + C D + + G + + E + K++ ++ +
Sbjct: 23 ETVILQCWSD-VMFEHFLLHREGM--------FNDTLRLIGEHHDGVSKANFSISRMTQD 73
Query: 330 DSGRFYC 336
+G + C
Sbjct: 74 LAGTYRC 80
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 27.5 bits (61), Expect = 8.7
Identities = 10/72 (13%), Positives = 17/72 (23%), Gaps = 8/72 (11%)
Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
EN T+ C G S + G+++ + + S
Sbjct: 115 ENVTLQCGSRL-RFDRFILTEEGDH-----KLSWTLDSQLTPSGQFQ--ALFPVGPVTPS 166
Query: 330 DSGRFYCVAENR 341
C R
Sbjct: 167 HRWMLRCYGSRR 178
Score = 27.5 bits (61), Expect = 9.4
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 14/91 (15%)
Query: 254 KPEIRMDSRYVEAVSS-ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
K + + V +S + T+ C+ + G +T
Sbjct: 5 KATLWAEPGSV--ISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDT----------QNP 51
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
E + K+ + + E +GR+ C + AG
Sbjct: 52 LEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 28.0 bits (62), Expect = 9.1
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 265 EAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
E + + AT+VC P +SW+ NG+ + ++ S+ + + Y S L
Sbjct: 132 EIANKQKATLVCLARGFFPDHVELSWWVNGKEV--HSGVSTDPQAYKESNYSYCLSSRLR 189
Query: 323 LTNAQ-ESDSGRFYCVAENRAGIADANFT 350
++ + F C + + +
Sbjct: 190 VSATFWHNPRNHFRCQVQFHGLSEEDKWP 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,253,881
Number of extensions: 559799
Number of successful extensions: 4096
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1770
Number of HSP's successfully gapped: 787
Length of query: 600
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 501
Effective length of database: 3,937,614
Effective search space: 1972744614
Effective search space used: 1972744614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)