BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16721
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K + I Y LHR P+ W P +F P+RF + +P Y PF GPR CIG ++A+
Sbjct: 369 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFAL 428
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQ 211
+ MK + +L+ + P CK Q
Sbjct: 429 MNMKLALIRVLQNFSFKP---CKETQ 451
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K + I Y LHR P+ W P +F P+RF + +P Y PF GPR CIG ++A+
Sbjct: 370 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFAL 429
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQ 211
+ MK + +L+ + P CK Q
Sbjct: 430 MNMKLALIRVLQNFSFKP---CKETQ 452
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K + I Y LHR P+ W P +F P+RF + +P Y PF GPR CIG ++A+
Sbjct: 368 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFAL 427
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQ 211
+ MK + +L+ + P CK Q
Sbjct: 428 MNMKLALIRVLQNFSFKP---CKETQ 450
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 94 YCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPD 153
+C +P+ I AT + + G S K T+ +Y +H + W +P F P+
Sbjct: 345 FCNIVPLGIFHATSEDA-------VVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPE 397
Query: 154 RFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKI-LPGDKCKSLQD 212
RFL S VPFSLG R C+G A ++M + +L+R+ + P + + D
Sbjct: 398 RFLDSSGYFAKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHE---LVPD 454
Query: 213 IRFEFGMTMRSLP 225
++ GMT++ P
Sbjct: 455 LKPRLGMTLQPQP 467
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 94 YCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPD 153
+C +P+ I AT + + G S K T+ +Y +H + W +P F P+
Sbjct: 345 FCNIVPLGIFHATSEDA-------VVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPE 397
Query: 154 RFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKI-LPGDKCKSLQD 212
RFL S VPFSLG R C+G A ++M + +L+R+ + P + + D
Sbjct: 398 RFLDSSGYFAKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHE---LVPD 454
Query: 213 IRFEFGMTMRSLP 225
++ GMT++ P
Sbjct: 455 LKPRLGMTLQPQP 467
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPS-GYVPFSLGPRGCIGSKYAMLQMKTTISTIL 196
H P L+ +P +FDP+RF P S+ NP +VPF G R C+G ++A L+MK + ++
Sbjct: 350 HADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEFARLEMKLFATRLI 409
Query: 197 RRYK--ILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIE 232
+++ +LPG E +T P +++R++
Sbjct: 410 QQFDWTLLPGQN--------LELVVTPSPRPKDNLRVK 439
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFL-PSQSSHRNPS-GYVPFSLGPRGCIGSKY 183
K + I ++ LH + + W+ P+QF P+RFL P+ + +PS Y+PF GPR CIG
Sbjct: 370 KGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEIL 429
Query: 184 AMLQMKTTISTILRRYKI-LPGD 205
A ++ ++ +L+R+ + +P D
Sbjct: 430 ARQELFLIMAWLLQRFDLEVPDD 452
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 135 YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTIST 194
Y + R + +P F+PDRF P R Y PFSLG R CIG ++A +++K ++
Sbjct: 348 YVMGRMDTYFEDPLTFNPDRFGPGAPKPRFT--YFPFSLGHRSCIGQQFAQMEVKVVMAK 405
Query: 195 ILRR--YKILPGDK 206
+L+R ++++PG +
Sbjct: 406 LLQRLEFRLVPGQR 419
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R P ++NP F+P FL + + +VPFS+G R C G A +++ +T+++
Sbjct: 378 RDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQN 437
Query: 199 YKI 201
+++
Sbjct: 438 FRL 440
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R P ++NP F+P FL + + +VPFS+G R C G A +++ +T+++
Sbjct: 378 RDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQN 437
Query: 199 YKI 201
+++
Sbjct: 438 FRL 440
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R P ++NP F+P FL + + +VPFS+G R C G A +++ +T+++
Sbjct: 378 RDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQN 437
Query: 199 YKI 201
+++
Sbjct: 438 FRL 440
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R P ++NP F+P FL + + +VPFS+G R C G A +++ +T+++
Sbjct: 378 RDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQN 437
Query: 199 YKI 201
+++
Sbjct: 438 FRL 440
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R P ++NP F+P FL + + +VPFS+G R C G A +++ +T+++
Sbjct: 378 RDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQN 437
Query: 199 YKI 201
+++
Sbjct: 438 FRL 440
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R P+ ++NP F+P FL + + +VPFS+G R C G A +++ +TI++
Sbjct: 378 RDPRFFSNPRDFNPQHFLDKKGQFKKSDAFVPFSIGKRYCFGEGLARMELFLFFTTIMQN 437
Query: 199 YKI 201
++
Sbjct: 438 FRF 440
>pdb|3EQM|A Chain A, Crystal Structure Of Human Placental Aromatase Cytochrome
P450 In Complex With Androstenedione
pdb|3S79|A Chain A, Human Placental Aromatase Cytochrome P450 (Cyp19a1)
Refined At 2.75 Angstrom
pdb|3S7S|A Chain A, Crystal Structure Of Human Placental Aromatase Complexed
With Breast Cancer Drug Exemestane
pdb|4GL5|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg029 (Compound 4)
pdb|4GL7|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg046 (Compound 5)
Length = 503
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 125 LKRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYV-PFSLGPRGCIGSKY 183
+K+ T I G + + PN+F + F + P Y PF GPRGC G
Sbjct: 388 VKKGTNIILNIGRMHRLEFFPKPNEFTLENF-----AKNVPYRYFQPFGFGPRGCAGKYI 442
Query: 184 AMLQMKTTISTILRRY--KILPGDKCKSLQDI 213
AM+ MK + T+LRR+ K L G +S+Q I
Sbjct: 443 AMVMMKAILVTLLRRFHVKTLQGQCVESIQKI 474
>pdb|3LD6|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3LD6|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3JUS|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUS|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUV|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C
Length = 461
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 144 WNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 200
W F+PDR+L + YVPF G CIG +A +Q+KT ST+LR Y+
Sbjct: 367 WVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYE 423
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 141 PQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 200
P + P+ F+PD FL + + + ++PFSLG R C+G A ++ +TIL+ +
Sbjct: 380 PHYFEKPDAFNPDHFLDANGALKKTEAFIPFSLGKRICLGEGIARAELFLFFTTILQNFS 439
Query: 201 I 201
+
Sbjct: 440 M 440
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 141 PQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 200
P+ + PN F+P FL + + + G++PFSLG R C+G A ++ +TIL+ +
Sbjct: 380 PRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFS 439
Query: 201 I 201
I
Sbjct: 440 I 440
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 141 PQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 200
P+ + PN F+P FL + + + G++PFSLG R C+G A ++ +TIL+ +
Sbjct: 380 PRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFS 439
Query: 201 I 201
I
Sbjct: 440 I 440
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 141 PQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 200
P+ + PN F+P FL + + + G++PFSLG R C+G A ++ +TIL+ +
Sbjct: 380 PRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFS 439
Query: 201 I 201
I
Sbjct: 440 I 440
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 141 PQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 200
P+ + PN F+P FL + + + G++PFSLG R C+G A ++ +TIL+ +
Sbjct: 380 PRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFS 439
Query: 201 I 201
I
Sbjct: 440 I 440
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K TI + + + + NPN FDP FL + + ++PFS G R C G A
Sbjct: 365 KGTTIMALLTSVLHDDKEFPNPNIFDPGHFLDKNGNFKKSDYFMPFSAGKRICAGEGLAR 424
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLP 225
+++ ++TIL+ + + D K+L G+ SLP
Sbjct: 425 MELFLFLTTILQNFNLKSVDDLKNLNTTAVTKGIV--SLP 462
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 141 PQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 200
P+ + PN F+P FL + + + G++PFSLG R C G A ++ +TIL+ +
Sbjct: 380 PRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICAGEGIARTELFLFFTTILQNFS 439
Query: 201 I 201
I
Sbjct: 440 I 440
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 135 YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTIST 194
Y + R P+ +++ +FDPDR+LP ++++ PFS G R C ++M Q+ +
Sbjct: 367 YAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSDHFSMAQLTLITAA 426
Query: 195 ILRRYK 200
+ +Y+
Sbjct: 427 LATKYR 432
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 134 IYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTIS 193
+ G H +W P++F PDRFL + NPS + F G R C+G A L++ ++
Sbjct: 387 LQGAHLDETVWEQPHEFRPDRFLEPGA---NPSA-LAFGCGARVCLGESLARLELFVVLA 442
Query: 194 TILRRYKILP 203
+L+ + +LP
Sbjct: 443 RLLQAFTLLP 452
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 143 LWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
+W P +F P+ FL +Q P ++PFS G R C+G A +++ +++L+ +
Sbjct: 386 VWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHF 442
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 143 LWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
+W P +F P+ FL +Q P ++PFS G R C+G A +++ +++L+ +
Sbjct: 386 VWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHF 442
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 144 WNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILP 203
+ + ++F P+R+L + NP ++PF +G R CIG + A LQ+ + I+++Y I+
Sbjct: 397 FEDSHKFRPERWL-QKEKKINPFAHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYDIVA 455
Query: 204 GD 205
D
Sbjct: 456 TD 457
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 139 RHPQLWNNPNQFDPDRF-LPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
R P+ + +P+ F P R+ P Q N ++PF G C+G+ +A++Q+K S +LR
Sbjct: 354 RIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLR 413
Query: 198 RYK 200
Y+
Sbjct: 414 EYE 416
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 148 NQFDPDRFLPSQSSHRNPSG-YVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKI--LPG 204
F P+RFL + + PSG Y PF LG R C+G +A+L+ + RR+++ LP
Sbjct: 308 EAFRPERFLEERGT---PSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPF 364
Query: 205 DKCKSLQDIRFEFGMTMRSLPGNDIR 230
+ + +R E G+ R P ++R
Sbjct: 365 PRVLAQVTLRPEGGLPAR--PREEVR 388
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 139 RHPQLWNNPNQFDPDRF-LPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
R P+ + +P+ F P R+ P Q N ++PF G C+G+ +A++Q+K S +LR
Sbjct: 354 RIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLR 413
Query: 198 RYK 200
Y+
Sbjct: 414 EYE 416
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 139 RHPQLWNNPNQFDPDRF-LPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
R P+ + +P+ F P R+ P Q N ++PF G C+G+ +A++Q+K S +LR
Sbjct: 354 RIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLR 413
Query: 198 RYK 200
Y+
Sbjct: 414 EYE 416
>pdb|1U13|A Chain A, Crystal Structure Analysis Of The C37lC151TC442A-Triple
Mutant Of Cyp51 From Mycobacterium Tuberculosis
Length = 455
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 139 RHPQLWNNPNQFDPDRF-LPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
R P+ + +P+ F P R+ P Q N ++PF G C+G+ +A++Q+K S +LR
Sbjct: 354 RIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLR 413
Query: 198 RYK 200
Y+
Sbjct: 414 EYE 416
>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
Length = 389
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 148 NQFDPDRFLPSQSSHRNPSG-YVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKI--LPG 204
F P+RFL + + PSG Y PF LG R C+G +A+L+ + RR+++ LP
Sbjct: 308 EAFQPERFLAERGT---PSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPF 364
Query: 205 DKCKSLQDIRFEFGMTMRSLPG 226
+ + +R E G+ R G
Sbjct: 365 PRVLAQVTLRPEGGLPARPREG 386
>pdb|3KHM|A Chain A, Crystal Structure Of Sterol 14alpha-Demethylase (Cyp51)
From Trypanosoma Cruzi In Complex With Inhibitor
Fluconazole
Length = 464
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + NP +DP+R + ++ F G CIG K+A+LQ+KT ++T R
Sbjct: 365 HHDEEAFPNPRLWDPER------DEKVDGAFIGFGAGVHKCIGQKFALLQVKTILATAFR 418
Query: 198 RY 199
Y
Sbjct: 419 EY 420
>pdb|3K1O|A Chain A, Crystal Structure Of Sterol 14-alpha Demethylase (cyp51)
From Trypanosoma Cruzi In Complex With A Potential
Antichagasic Drug, Posaconazole
pdb|3KSW|A Chain A, Crystal Structure Of Sterol 14alpha-demethylase (cyp51)
From Trypanosoma Cruzi In Complex With An Inhibitor Vnf
((4-(4-
Chlorophenyl)-n-[2-(1h-imidazol-1-yl)-1-
phenylethyl]benzamide)
Length = 458
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + NP +DP+R + ++ F G CIG K+A+LQ+KT ++T R
Sbjct: 359 HHDEEAFPNPRLWDPER------DEKVDGAFIGFGAGVHKCIGQKFALLQVKTILATAFR 412
Query: 198 RY 199
Y
Sbjct: 413 EY 414
>pdb|2WUZ|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WUZ|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WX2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
pdb|2WX2|B Chain B, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
Length = 473
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + NP +DP+R + ++ F G CIG K+A+LQ+KT ++T R
Sbjct: 374 HHDEEAFPNPRLWDPER------DEKVDGAFIGFGAGVHKCIGQKFALLQVKTILATAFR 427
Query: 198 RY 199
Y
Sbjct: 428 EY 429
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 146 NPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKI 201
NP FDP FL + + ++PFS G R C+G A +++ +++IL+ +K+
Sbjct: 382 NPKVFDPGHFLDESGNFKKSDYFMPFSAGKRMCVGEGLARMELFLFLTSILQNFKL 437
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNP---SGYVPFSLGPRGCIGSK 182
K+ + + + ++ P+LW +P++F P+RFL + + N + F +G R CIG
Sbjct: 379 KKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEV 438
Query: 183 YAMLQMKTTISTILRR--YKILPGDKCKSLQDIRFEFGMTMR 222
A ++ ++ +L++ + + PG K D+ +G+TM+
Sbjct: 439 LAKWEIFLFLAILLQQLEFSVPPGVKV----DLTPIYGLTMK 476
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 127 RATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSS---HRNPSGYVPFSLGPRGCIGSKY 183
+ + + IY + R P +++P++FDP R+L RN + F G R C+G +
Sbjct: 373 KTLVQVAIYAMGRDPAFFSSPDKFDPTRWLSKDKDLIHFRN----LGFGWGVRQCVGRRI 428
Query: 184 AMLQMKTTISTILRRYKI 201
A L+M + IL +K+
Sbjct: 429 AELEMTLFLIHILENFKV 446
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 127 RATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGY--VPFSLGPRGCIGSKYA 184
+ + + IY L R P + +P FDP R+L S +N + + + F G R C+G + A
Sbjct: 369 KTLVQVAIYALGREPTFFFDPENFDPTRWL---SKDKNITYFRNLGFGWGVRQCLGRRIA 425
Query: 185 MLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTM 221
L+M + +L +++ + + L D+ F + +
Sbjct: 426 ELEMTIFLINMLENFRV----EIQHLSDVGTTFNLIL 458
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 127 RATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGY--VPFSLGPRGCIGSKYA 184
+ + + IY L R P + +P FDP R+L S +N + + + F G R C+G + A
Sbjct: 372 KTLVQVAIYALGREPTFFFDPENFDPTRWL---SKDKNITYFRNLGFGWGVRQCLGRRIA 428
Query: 185 MLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTM 221
L+M + +L +++ + + L D+ F + +
Sbjct: 429 ELEMTIFLINMLENFRV----EIQHLSDVGTTFNLIL 461
>pdb|3L4D|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
Length = 453
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H+ + + NP +++P+R + + F G CIG K+ +LQ+KT ++T+LR
Sbjct: 360 HQDEEAFPNPREWNPERNMKLVDG-----AFCGFGAGVHKCIGEKFGLLQVKTVLATVLR 414
Query: 198 RY 199
Y
Sbjct: 415 DY 416
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K TI I + + + + NP FDP FL + + ++PFS G R C+G A
Sbjct: 364 KGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAG 423
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQD 212
+++ +++IL+ + + KSL D
Sbjct: 424 MELFLFLTSILQNFNL------KSLVD 444
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K TI I + + + + NP FDP FL + + ++PFS G R C+G A
Sbjct: 366 KGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAG 425
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQD 212
+++ +++IL+ + + KSL D
Sbjct: 426 MELFLFLTSILQNFNL------KSLVD 446
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQS--SHRNPSGYVPFSLGPRGCIGSKY 183
K + + + ++ P W NP FDP RFL + S + FS+G R CIG +
Sbjct: 376 KDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEEL 435
Query: 184 AMLQMKTTISTILRR--YKILPGDKCKSLQDIRFEFGMTMR 222
+ +Q+ IS + + ++ P + K + F +G+T++
Sbjct: 436 SKMQLFLFISILAHQCDFRANPNEPAK----MNFSYGLTIK 472
>pdb|2FR7|A Chain A, Crystal Structure Of Cytochrome P450 Cyp199a2
pdb|4DNJ|A Chain A, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a2
Length = 412
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 104 RATKDQSPKCTQLWFAWGTSD--LKRATIG------IFIYGLHRHPQLWNNPNQFDPDRF 155
A + +SP Q +F T D L ATIG +F+ +R P+ W++P+++D
Sbjct: 290 EAVRFESP--VQTFFRTTTRDVELAGATIGEGEKVLMFLGSANRDPRRWDDPDRYD---- 343
Query: 156 LPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRF 215
R SG+V F G C+G A L+ + ++ + R+ + + ++
Sbjct: 344 -----ITRKTSGHVGFGSGVHMCVGQLVARLEGEVVLAALARKVAAI-----EIAGPLKR 393
Query: 216 EFGMTMRSLPGNDIRIEP 233
F T+R L I++ P
Sbjct: 394 RFNNTLRGLESLPIQLTP 411
>pdb|3TIK|A Chain A, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|B Chain B, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|C Chain C, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|D Chain D, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
Length = 454
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + P ++DP+R + ++ F G CIG K+ +LQ+KT ++T R
Sbjct: 361 HHDEEAFPEPRRWDPER------DEKVEGAFIGFGAGVHKCIGQKFGLLQVKTILATAFR 414
Query: 198 RY 199
Y
Sbjct: 415 SY 416
>pdb|3P99|A Chain A, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|B Chain B, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|C Chain C, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|D Chain D, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
Length = 453
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + P ++DP+R + ++ F G CIG K+ +LQ+KT ++T R
Sbjct: 360 HHDEEAFPEPRRWDPER------DEKVEGAFIGFGAGVHKCIGQKFGLLQVKTILATAFR 413
Query: 198 RY 199
Y
Sbjct: 414 SY 415
>pdb|4DVQ|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4FDH|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
Length = 483
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
+ +F+Y L R+ L+ P +++P R+L + S RN +VPF G R C+G +
Sbjct: 377 VQVFLYSLGRNAALFPRPERYNPQRWLDIRGSGRN-FHHVPFGFGMRQCLGRR 428
>pdb|3G1Q|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
Length = 450
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + P ++DP+R + ++ F G CIG K+ +LQ+KT ++T R
Sbjct: 362 HHDEEAFPEPRRWDPER------DEKVEGAFIGFGAGVHKCIGQKFGLLQVKTILATAFR 415
Query: 198 RY 199
Y
Sbjct: 416 SY 417
>pdb|3GW9|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
Length = 450
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + P ++DP+R + ++ F G CIG K+ +LQ+KT ++T R
Sbjct: 361 HHDEEAFPEPRRWDPER------DEKVEGAFIGFGAGVHKCIGQKFGLLQVKTILATAFR 414
Query: 198 RY 199
Y
Sbjct: 415 SY 416
>pdb|2WV2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Brucei In Complex With Fluconazole
Length = 475
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + P ++DP+R + ++ F G CIG K+ +LQ+KT ++T R
Sbjct: 374 HHDEEAFPEPRRWDPER------DEKVEGAFIGFGAGVHKCIGQKFGLLQVKTILATAFR 427
Query: 198 RY 199
Y
Sbjct: 428 SY 429
>pdb|2X2N|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|C Chain C, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|D Chain D, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
Length = 475
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
H + + P ++DP+R + ++ F G CIG K+ +LQ+KT ++T R
Sbjct: 374 HHDEEAFPEPRRWDPER------DEKVEGAFIGFGAGVHKCIGQKFGLLQVKTILATAFR 427
Query: 198 RY 199
Y
Sbjct: 428 SY 429
>pdb|3PSX|A Chain A, Crystal Structure Of The Kt2 Mutant Of Cytochrome P450 Bm3
pdb|3PSX|B Chain B, Crystal Structure Of The Kt2 Mutant Of Cytochrome P450 Bm3
Length = 487
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 126 KRATIGIFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCI 179
K I + I LHR +W ++ +F P+RF NPS + PF G R CI
Sbjct: 355 KGDEIMVLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACI 407
Query: 180 GSKYAMLQMKTTISTILRRY 199
G ++A+ + + +L+ +
Sbjct: 408 GQQFALHEATLVLGMMLKHF 427
>pdb|3CBD|A Chain A, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
pdb|3CBD|B Chain B, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
Length = 455
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 126 KRATIGIFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCI 179
K + + I LHR +W ++ +F P+RF NPS + PF G R CI
Sbjct: 349 KGDEVMVLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACI 401
Query: 180 GSKYAMLQMKTTISTILRRY 199
G ++A+ + + +L+ +
Sbjct: 402 GQQFALHEATLVLGMMLKHF 421
>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
Length = 417
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 118 FAWGTSDLKRAT-IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRN--PSGYVPFSLG 174
F W + K+ T + + +YG + P+LW++P++F P+RF + + + P G G
Sbjct: 301 FVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAEREENLFDMIPQGGGHAEKG 360
Query: 175 PRGCIGSKYAMLQMKTTISTILRRYK 200
R C G + MK ++ ++ + +
Sbjct: 361 HR-CPGEGITIEVMKASLDFLVHQIE 385
>pdb|3DGI|A Chain A, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
pdb|3DGI|B Chain B, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
Length = 461
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|2IJ2|A Chain A, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
pdb|2IJ2|B Chain B, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|1FAH|A Chain A, Structure Of Cytochrome P450
pdb|1FAH|B Chain B, Structure Of Cytochrome P450
Length = 471
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|2HPD|A Chain A, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|2HPD|B Chain B, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|1FAG|A Chain A, Structure Of Cytochrome P450
pdb|1FAG|B Chain B, Structure Of Cytochrome P450
pdb|1FAG|C Chain C, Structure Of Cytochrome P450
pdb|1FAG|D Chain D, Structure Of Cytochrome P450
Length = 471
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|2X7Y|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X7Y|B Chain B, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|B Chain B, P450 Bm3 F87a In Complex With Dmso
Length = 455
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|3EKF|A Chain A, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKF|B Chain B, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|3EKD|A Chain A, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKD|B Chain B, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|2BMH|A Chain A, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|2BMH|B Chain B, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|1BU7|B Chain B, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|2J1M|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J1M|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
Length = 455
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|3KX5|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX5|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
pdb|1BVY|B Chain B, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 458
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|1YQO|A Chain A, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1YQO|B Chain B, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|1SMI|A Chain A, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMI|B Chain B, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMJ|A Chain A, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|B Chain B, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|C Chain C, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|D Chain D, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
Length = 471
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|3BEN|A Chain A, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
pdb|3BEN|B Chain B, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 356 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 408
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 409 HEATLVLGMMLKHF 422
>pdb|2IJ4|A Chain A, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
pdb|2IJ4|B Chain B, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|4DUF|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|C Chain C, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|D Chain D, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
Length = 471
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|4DUD|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUD|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUE|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
pdb|4DUE|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
Length = 471
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|4DUC|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
pdb|4DUC|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
Length = 472
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 356 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 408
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 409 HEATLVLGMMLKHF 422
>pdb|2NNB|A Chain A, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
pdb|2NNB|B Chain B, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
Length = 471
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGKQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|1ZO4|A Chain A, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
pdb|1ZO4|B Chain B, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
Length = 473
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 358 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 410
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 411 HEATLVLGMMLKHF 424
>pdb|1JPZ|A Chain A, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1ZO9|A Chain A, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
pdb|1ZO9|B Chain B, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
Length = 473
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 358 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 410
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 411 HEATLVLGMMLKHF 424
>pdb|3EKB|A Chain A, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
pdb|3EKB|B Chain B, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|1YQP|A Chain A, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
pdb|1YQP|B Chain B, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|3KX3|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX3|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|2UWH|A Chain A, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|B Chain B, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|C Chain C, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|D Chain D, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|E Chain E, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|F Chain F, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
Length = 458
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|2IJ3|A Chain A, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
pdb|2IJ3|B Chain B, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|1ZOA|A Chain A, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
pdb|1ZOA|B Chain B, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
Length = 473
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 358 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 410
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 411 HEATLVLGMMLKHF 424
>pdb|4DUB|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
pdb|4DUB|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
Length = 472
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 356 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 408
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 409 HEATLVLGMMLKHF 422
>pdb|4DUA|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
pdb|4DUA|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
Length = 471
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|3M4V|A Chain A, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
pdb|3M4V|B Chain B, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 356 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 408
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 409 HEATLVLGMMLKHF 422
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 146 NPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKI 201
NP FDP FL + + + ++PFS G R C+G A +++ ++ IL+ + +
Sbjct: 386 NPEMFDPRHFLDEGGNFKKSNYFMPFSAGKRICVGEGLARMELFLFLTFILQNFNL 441
>pdb|3NPL|A Chain A, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
pdb|3NPL|B Chain B, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
Length = 470
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 356 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 408
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 409 HEATLVLGMMLKHF 422
>pdb|4DTW|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Serotonin
pdb|4DTW|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Serotonin
pdb|4DTY|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor, No Ligand
pdb|4DTY|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor, No Ligand
pdb|4DTZ|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Dopamine
pdb|4DTZ|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Dopamine
Length = 469
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|4DU2|B Chain B, Cytochrome P450 Bm3h-B7 Mri Sensor Bound To Dopamine
pdb|4DU2|A Chain A, Cytochrome P450 Bm3h-B7 Mri Sensor Bound To Dopamine
Length = 470
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 356 VLIPQLHRDKTVWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 408
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 409 HEATLVLGMMLKHF 422
>pdb|3QI8|B Chain B, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
pdb|3QI8|A Chain A, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
Length = 472
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R CIG ++A+
Sbjct: 356 VLIPQLHRDKTVWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACIGQQFAL 408
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 409 HEATLVLGMMLKHF 422
>pdb|3ABA|A Chain A, Crystal Structure Of Cyp105p1 In Complex With Filipin I
Length = 403
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 151 DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDK-CKS 209
+P+RF R P+ ++ F G CIG + A ++++ T+ RR LPG + K
Sbjct: 325 EPERF----DITRRPAPHLAFGFGAHQCIGQQLARIELQIVFETLFRR---LPGLRLAKP 377
Query: 210 LQDIRFEFGMT 220
++++RF M
Sbjct: 378 VEELRFRHDMV 388
>pdb|3E5L|A Chain A, Crystal Structure Of Cyp105p1 H72a Mutant
Length = 403
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 151 DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDK-CKS 209
+P+RF R P+ ++ F G CIG + A ++++ T+ RR LPG + K
Sbjct: 325 EPERF----DITRRPAPHLAFGFGAHQCIGQQLARIELQIVFETLFRR---LPGLRLAKP 377
Query: 210 LQDIRFEFGMT 220
++++RF M
Sbjct: 378 VEELRFRHDMV 388
>pdb|4DNZ|A Chain A, The Crystal Structures Of Cyp199a4
pdb|4DNZ|B Chain B, The Crystal Structures Of Cyp199a4
pdb|4DNZ|C Chain C, The Crystal Structures Of Cyp199a4
pdb|4DNZ|D Chain D, The Crystal Structures Of Cyp199a4
pdb|4DO1|A Chain A, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|B Chain B, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|C Chain C, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4DO1|D Chain D, The Crystal Structures Of 4-Methoxybenzoate Bound Cyp199a4
pdb|4EGM|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGM|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
4-ethylbenzoic Acid
pdb|4EGN|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGN|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Veratric Acid
pdb|4EGO|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|C Chain C, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGO|D Chain D, The X-ray Crystal Structure Of Cyp199a4 In Complex With
Indole-6- Carboxylic Acid
pdb|4EGP|A Chain A, The X-ray Crystal Structure Of Cyp199a4 In Complex With
2-naphthoic Acid
pdb|4EGP|B Chain B, The X-ray Crystal Structure Of Cyp199a4 In Complex With
2-naphthoic Acid
Length = 410
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 104 RATKDQSPKCTQLWFAWGTSDLKRATIG------IFIYGLHRHPQLWNNPNQFDPDRFLP 157
A + +SP T +L A IG +F+ +R P+ W++P+ +D
Sbjct: 288 EAVRFESPVQTFFRTTTREVELGGAVIGEGEKVLMFLGSANRDPRRWSDPDLYD------ 341
Query: 158 SQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEF 217
R SG+V F G C+G A L+ + +S + R+ + D ++ F
Sbjct: 342 ---ITRKTSGHVGFGSGVHMCVGQLVARLEGEVMLSALARKVAAIDIDG-----PVKRRF 393
Query: 218 GMTMRSLPGNDIRIEP 233
T+R L +++ P
Sbjct: 394 NNTLRGLESLPVKLTP 409
>pdb|3TYW|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|C Chain C, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|D Chain D, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|4FXB|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces
Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
Siderophore Biosynthetic Pathway
pdb|4FXB|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces
Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
Siderophore Biosynthetic Pathway
Length = 417
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 145 NNPNQFD-PDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKIL 202
++P QFD P+R HR + +V F G C+G A L+++ + T+LRR L
Sbjct: 330 HDPEQFDDPERV----DFHRTDNHHVAFGYGVHQCVGQHLARLELEVALETLLRRVPTL 384
>pdb|3EJB|B Chain B, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|D Chain D, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|F Chain F, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|H Chain H, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|B Chain B, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|D Chain D, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|F Chain F, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|H Chain H, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|B Chain B, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|D Chain D, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|F Chain F, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|H Chain H, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 404
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 132 IFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTT 191
+ + +R P ++ NP+ FD R +P+ ++ F G C+GS A L+ +
Sbjct: 307 LLLGAANRDPSIFTNPDVFDITR---------SPNPHLSFGHGHHVCLGSSLARLEAQIA 357
Query: 192 ISTILRR 198
I+T+L+R
Sbjct: 358 INTLLQR 364
>pdb|2BVJ|A Chain A, Ligand-Free Structure Of Cytochrome P450 Pikc (Cyp107l1)
pdb|2BVJ|B Chain B, Ligand-Free Structure Of Cytochrome P450 Pikc (Cyp107l1)
pdb|2C6H|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2C6H|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2C7X|A Chain A, Crystal Structure Of Narbomycin-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CA0|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CA0|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CD8|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CD8|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
Length = 436
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 129 TIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQM 188
T+ + + HR P+ + +P++FD R+ +G++ F G CIG+ A L+
Sbjct: 334 TVLVVLADAHRTPERFPDPHRFD---------IRRDTAGHLAFGHGIHFCIGAPLARLEA 384
Query: 189 KTTISTILRR 198
+ + +L R
Sbjct: 385 RIAVRALLER 394
>pdb|2WHW|A Chain A, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WHW|B Chain B, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WI9|A Chain A, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WI9|B Chain B, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
Length = 436
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 129 TIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQM 188
T+ + + HR P+ + +P++FD R+ +G++ F G CIG+ A L+
Sbjct: 334 TVLVVLADAHRTPERFPDPHRFD---------IRRDTAGHLAFGHGIHFCIGAPLARLEA 384
Query: 189 KTTISTILRR 198
+ + +L R
Sbjct: 385 RIAVRALLER 394
>pdb|2VZ7|A Chain A, Crystal Structure Of The Yc-17-Bound Pikc D50n Mutant
pdb|2VZ7|B Chain B, Crystal Structure Of The Yc-17-Bound Pikc D50n Mutant
pdb|2VZM|A Chain A, Crystal Structure Of The Narbomycin-Bound Pikc D50n Mutant
pdb|2VZM|B Chain B, Crystal Structure Of The Narbomycin-Bound Pikc D50n Mutant
Length = 436
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 129 TIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQM 188
T+ + + HR P+ + +P++FD R+ +G++ F G CIG+ A L+
Sbjct: 334 TVLVVLADAHRTPERFPDPHRFD---------IRRDTAGHLAFGHGIHFCIGAPLARLEA 384
Query: 189 KTTISTILRR 198
+ + +L R
Sbjct: 385 RIAVRALLER 394
>pdb|3E5J|A Chain A, Crystal Structure Of Cyp105p1 Wild-type Ligand-free Form
pdb|3E5K|A Chain A, Crystal Structure Of Cyp105p1 Wild-Type 4-Phenylimidazole
Complex
Length = 403
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 151 DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDK-CKS 209
+P+RF R P+ ++ F G CIG + A ++++ T+ RR LPG + K
Sbjct: 325 EPERF----DITRRPAPHLAFGFGAHQCIGQQLARIELQIVFETLFRR---LPGLRLAKP 377
Query: 210 LQDIRF 215
++++RF
Sbjct: 378 VEELRF 383
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 142 QLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKI 201
Q + +P +F P+ FL + + PFS G R C G A +++ + IL+ + +
Sbjct: 380 QEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGLARMELFLLLCAILQHFNL 439
Query: 202 LP--GDKCKSLQDIRFEFG 218
P K L I FG
Sbjct: 440 KPLVDPKDIDLSPIHIGFG 458
>pdb|3KX4|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX4|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R C G ++A+
Sbjct: 355 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACEGQQFAL 407
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 408 HEATLVLGMMLKHF 421
>pdb|1S1F|A Chain A, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
Length = 406
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 127 RATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYA 184
RA +++ +R P+++ +P++ D R+P+ +V F GP C G A
Sbjct: 309 RAGDAVYVSYLAANRDPEVFPDPDRID---------FERSPNPHVSFGFGPHYCPGGMLA 359
Query: 185 MLQMKTTISTILRRYKILPGDKCK-SLQDIRFEFGMTMR 222
L+ + + +L R +PG K + +D+ F+ G +R
Sbjct: 360 RLESELLVDAVLDR---VPGLKLAVAPEDVPFKKGALIR 395
>pdb|3TZO|A Chain A, The Role Of I87 Of Cyp158a2 In Oxidative Coupling Reaction
pdb|3TZO|B Chain B, The Role Of I87 Of Cyp158a2 In Oxidative Coupling Reaction
Length = 410
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 127 RATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYA 184
RA +++ +R P+++ +P++ D R+P+ +V F GP C G A
Sbjct: 309 RAGDAVYVSYLAANRDPEVFPDPDRID---------FERSPNPHVSFGFGPHYCPGGMLA 359
Query: 185 MLQMKTTISTILRRYKILPGDKCK-SLQDIRFEFGMTMR 222
L+ + + +L R +PG K + +D+ F+ G +R
Sbjct: 360 RLESELLVDAVLDR---VPGLKLAVAPEDVPFKKGALIR 395
>pdb|2D0E|A Chain A, Substrate Assited In Oxygen Activation In Cytochrome P450
158a2
Length = 407
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 127 RATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYA 184
RA +++ +R P+++ +P++ D R+P+ +V F GP C G A
Sbjct: 309 RAGDAVYVSYLAANRDPEVFPDPDRID---------FERSPNPHVSFGFGPHYCPGGMLA 359
Query: 185 MLQMKTTISTILRRYKILPGDKCK-SLQDIRFEFGMTMR 222
L+ + + +L R +PG K + +D+ F+ G +R
Sbjct: 360 RLESELLVDAVLDR---VPGLKLAVAPEDVPFKKGALIR 395
>pdb|1T93|A Chain A, Evidence For Multiple Substrate Recognition And Molecular
Mechanism Of C-C Reaction By Cytochrome P450 Cyp158a2
From Streptomyces Coelicolor A3(2)
Length = 406
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 127 RATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYA 184
RA +++ +R P+++ +P++ D R+P+ +V F GP C G A
Sbjct: 309 RAGDAVYVSYLAANRDPEVFPDPDRID---------FERSPNPHVSFGFGPHYCPGGMLA 359
Query: 185 MLQMKTTISTILRRYKILPGDKCK-SLQDIRFEFGMTMR 222
L+ + + +L R +PG K + +D+ F+ G +R
Sbjct: 360 RLESELLVDAVLDR---VPGLKLAVAPEDVPFKKGALIR 395
>pdb|2D09|A Chain A, A Role For Active Site Water Molecules And Hydroxyl Groups
Of Substrate For Oxygen Activation In Cytochrome P450
158a2
Length = 407
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 127 RATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYA 184
RA +++ +R P+++ +P++ D R+P+ +V F GP C G A
Sbjct: 309 RAGDAVYVSYLAANRDPEVFPDPDRID---------FERSPNPHVSFGFGPHYCPGGMLA 359
Query: 185 MLQMKTTISTILRRYKILPGDKCK-SLQDIRFEFGMTMR 222
L+ + + +L R +PG K + +D+ F+ G +R
Sbjct: 360 RLESELLVDAVLDR---VPGLKLAVAPEDVPFKKGALIR 395
>pdb|1SE6|A Chain A, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
pdb|1SE6|B Chain B, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
Length = 406
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 127 RATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYA 184
RA +++ +R P+++ +P++ D R+P+ +V F GP C G A
Sbjct: 309 RAGDAVYVSYLAANRDPEVFPDPDRID---------FERSPNPHVSFGFGPHYCPGGMLA 359
Query: 185 MLQMKTTISTILRRYKILPGDKCK-SLQDIRFEFGMTMR 222
L+ + + +L R +PG K + +D+ F+ G +R
Sbjct: 360 RLESELLVDAVLDR---VPGLKLAVAPEDVPFKKGALIR 395
>pdb|3TNK|A Chain A, Crystal Structure Of Mutant I87r In Cyp158a2
pdb|3TNK|B Chain B, Crystal Structure Of Mutant I87r In Cyp158a2
Length = 407
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 127 RATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYA 184
RA +++ +R P+++ +P++ D R+P+ +V F GP C G A
Sbjct: 309 RAGDAVYVSYLAANRDPEVFPDPDRID---------FERSPNPHVSFGFGPHYCPGGMLA 359
Query: 185 MLQMKTTISTILRRYKILPGDKCK-SLQDIRFEFGMTMR 222
L+ + + +L R +PG K + +D+ F+ G +R
Sbjct: 360 RLESELLVDAVLDR---VPGLKLAVAPEDVPFKKGALIR 395
>pdb|3HF2|A Chain A, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
pdb|3HF2|B Chain B, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 132 IFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSG-----YVPFSLGPRGCIGSKYAM 185
+ I LHR +W ++ +F P+RF NPS + PF G R C G ++A+
Sbjct: 356 VLIPQLHRDKTIWGDDVEEFRPERF-------ENPSAIPQHAFKPFGNGQRACPGQQFAL 408
Query: 186 LQMKTTISTILRRY 199
+ + +L+ +
Sbjct: 409 HEATLVLGMMLKHF 422
>pdb|2YOO|A Chain A, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|B Chain B, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|C Chain C, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|D Chain D, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|3ZBY|A Chain A, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|B Chain B, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|C Chain C, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|D Chain D, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|E Chain E, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|F Chain F, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
Length = 407
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 151 DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
DPD F RNP+ +V F G C+G++ A L+++ +LRR
Sbjct: 320 DPDNF----RIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRR 363
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 135 YGLHRHPQLWNNPNQFDPDRFL-PSQSSHRNPSGYV-PFSLGPRGCIGSKYAMLQMKTTI 192
+ ++ +LW NP++F P+RFL P + + S V F +G R CIG A ++ +
Sbjct: 385 WQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFL 444
Query: 193 STILRR--YKILPGDKCKSLQDIRFEFGMTMR 222
+ +L+R + + G K D+ +G+TM+
Sbjct: 445 AILLQRVEFSVPLGVKV----DMTPIYGLTMK 472
>pdb|3R9C|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 With
Econazole Bound
pdb|3R9B|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|C Chain C, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
Length = 418
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K T+ + + HR P + P++FDPDR +Q H + F G C+G+ A
Sbjct: 323 KGDTMLLLLAAAHRDPTIVGAPDRFDPDR---AQIRH------LGFGKGAHFCLGAPLAR 373
Query: 186 LQMKTTISTILRRY 199
L+ + + R+
Sbjct: 374 LEATVALPALAARF 387
>pdb|2WIV|A Chain A, Cytochrome-P450 Xpla Heme Domain P21
pdb|2WIV|B Chain B, Cytochrome-P450 Xpla Heme Domain P21
pdb|2WIY|A Chain A, Cytochrome P450 Xpla Heme Domain P21212
Length = 394
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMK 189
I I +R P+++++P+ FD R P +S RN S F LGP C G + +
Sbjct: 304 IRFMIGAANRDPEVFDDPDVFDHTR--PPAAS-RNLS----FGLGPHSCAGQIISRAEAT 356
Query: 190 TTISTILRRYK 200
T + + RY+
Sbjct: 357 TVFAVLAERYE 367
>pdb|4EP6|A Chain A, Crystal Structure Of The Xpla Heme Domain In Complex With
Imidazole And Peg
Length = 392
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMK 189
I I +R P+++++P+ FD R P +S RN S F LGP C G + +
Sbjct: 302 IRFMIGAANRDPEVFDDPDVFDHTR--PPAAS-RNLS----FGLGPHSCAGQIISRAEAT 354
Query: 190 TTISTILRRYK 200
T + + RY+
Sbjct: 355 TVFAVLAERYE 365
>pdb|3MGX|A Chain A, Crystal Structure Of P450 Oxyd That Is Involved In The
Biosynthesis Of Vancomycin-Type Antibiotics
pdb|3MGX|B Chain B, Crystal Structure Of P450 Oxyd That Is Involved In The
Biosynthesis Of Vancomycin-Type Antibiotics
Length = 415
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 141 PQLWNNPNQFD-PDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
P +P +FD PD FLP R P+ ++ F G C+GS A +++ + + R
Sbjct: 330 PAANRDPAEFDDPDTFLPG----RKPNRHITFGHGMHHCLGSALARIELSVVLRVLAERV 385
>pdb|1CMN|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Their Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 81 TLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFI--YGLH 138
+L+ Q E L C Y + + I R K+ L RA GI +
Sbjct: 269 SLAPQFVEEL-CRYHTAVALAIKRTAKED---------VMIGDKLVRANEGIIASNQSAN 318
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R +++ NP++F+ +R P Q +P G F G CI A ++ T ST+ ++
Sbjct: 319 RDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEHLAKAELTTVFSTLYQK 371
Query: 199 Y 199
+
Sbjct: 372 F 372
>pdb|1EHG|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
Length = 403
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 81 TLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFI--YGLH 138
+L+ Q E L C Y + + I R K+ L RA GI +
Sbjct: 270 SLAPQFVEEL-CRYHTAVALAIKRTAKED---------VMIGDKLVRANEGIIASNQSAN 319
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R +++ NP++F+ +R P Q +P G F G CI A ++ T ST+ ++
Sbjct: 320 RDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEHLAKAELTTVFSTLYQK 372
Query: 199 Y 199
+
Sbjct: 373 F 373
>pdb|3B98|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B98|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B99|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
pdb|3B99|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
Length = 475
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 141 PQLWNNPNQFDPDRFLPSQSSHRN-----------PSGYVPFSLGPRGCIGSKYAMLQMK 189
PQ+ P F DRFL + + + PS VP+ C G +A+ +K
Sbjct: 366 PQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPS--VPWGTEDNLCPGRHFAVHAIK 423
Query: 190 TTISTILRRYKILPGDKCKSLQDI---RFEFGMTMRSLPGNDIRIEPR 234
+ TIL R+ + DK ++ + R+ FG+ P D+ I R
Sbjct: 424 ELVFTILTRFDVELCDKNATVPLVDPSRYGFGILQ---PAGDLEIRYR 468
>pdb|1CPT|A Chain A, Crystal Structure And Refinement Of Cytochrome P450-Terp
At 2.3 Angstroms Resolution
Length = 428
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
+R ++++NP++FD RF P+ ++ F G C+G A L+MK +L
Sbjct: 346 NRDEEVFSNPDEFDITRF---------PNRHLGFGWGAHMCLGQHLAKLEMKIFFEELLP 396
Query: 198 RYK 200
+ K
Sbjct: 397 KLK 399
>pdb|1UE8|A Chain A, Crystal Structure Of Thermophilic Cytochrome P450 From
Sulfolobus Tokodaii
pdb|3B4X|A Chain A, Crystal Structure Analysis Of Sulfolobus Tokodaii Strain7
Cytochrom P450
Length = 367
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMK 189
+ ++I +R +++ +P+ F PDR P+ ++ F G C+G+ A L+ +
Sbjct: 278 VRVWIASANRDEEVFKDPDSFIPDR---------TPNPHLSFGSGIHLCLGAPLARLEAR 328
Query: 190 TTISTILRRYKI 201
+ +++++
Sbjct: 329 IALEEFAKKFRV 340
>pdb|1EHF|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
Length = 403
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 81 TLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFI--YGLH 138
+L+ Q E L C Y + I R K+ L RA GI +
Sbjct: 270 SLAPQFVEEL-CRYHTATALAIKRTAKED---------VMIGDKLVRANEGIIASNQSAN 319
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R +++ NP++F+ +R P Q +P G F G CI A ++ T ST+ ++
Sbjct: 320 RDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEHLAKAELTTVFSTLYQK 372
Query: 199 Y 199
+
Sbjct: 373 F 373
>pdb|1F24|A Chain A, Crystal Structure Of No Complex Of Thr243ala Mutants Of
Cytochrome P450nor
Length = 402
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 125 LKRATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA GI +R +++ NP++F+ +R P Q +P G F G CI
Sbjct: 303 LVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEH 355
Query: 183 YAMLQMKTTISTILRRY 199
A ++ T ST+ +++
Sbjct: 356 LAKAELTTVFSTLYQKF 372
>pdb|1CMJ|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Their Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 81 TLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFI--YGLH 138
+L+ Q E L C Y + I R K+ L RA GI +
Sbjct: 269 SLAPQFVEEL-CRYHTATALAIKRTAKED---------VMIGDKLVRANEGIIASNQSAN 318
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R +++ NP++F+ +R P Q +P G F G CI A ++ T ST+ ++
Sbjct: 319 RDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEHLAKAELTTVFSTLYQK 371
Query: 199 Y 199
+
Sbjct: 372 F 372
>pdb|1JFB|A Chain A, X-Ray Structure Of Nitric Oxide Reductase (Cytochrome
P450nor) In The Ferric Resting State At Atomic
Resolution
pdb|1JFC|A Chain A, X-ray Structure Of Nitric Oxide Reductase (cytochrome
P450nor) In The Ferrous Co State At Atomic Resolution
Length = 404
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 125 LKRATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA GI +R +++ NP++F+ +R P Q +P G F G CI
Sbjct: 305 LVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEH 357
Query: 183 YAMLQMKTTISTILRRY 199
A ++ T ST+ +++
Sbjct: 358 LAKAELTTVFSTLYQKF 374
>pdb|1F26|A Chain A, Crystal Structure Of No Complex Of Thr243val Mutants Of
Cytochrome P450nor
Length = 402
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 125 LKRATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA GI +R +++ NP++F+ +R P Q +P G F G CI
Sbjct: 303 LVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEH 355
Query: 183 YAMLQMKTTISTILRRY 199
A ++ T ST+ +++
Sbjct: 356 LAKAELTTVFSTLYQKF 372
>pdb|1CL6|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Its Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 125 LKRATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA GI +R +++ NP++F+ +R P Q +P G F G CI
Sbjct: 303 LVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEH 355
Query: 183 YAMLQMKTTISTILRRY 199
A ++ T ST+ +++
Sbjct: 356 LAKAELTTVFSTLYQKF 372
>pdb|1EHE|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
pdb|1GEI|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1GED|A Chain A, A Positive Charge Route For The Access Of Nadh To Heme
Formed In The Distal Heme Pocket Of Cytochrome P450nor
pdb|1GEJ|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1ROM|A Chain A, Crystal Structure Of Nitric Reductase From Denitrifying
Fungus Fusarium Oxysporum
pdb|2ROM|A Chain A, Crystal Structure Of Nitric Reductase From Denitrifying
Fungus Fusarium Oxysporum Complex With Carbon Monoxide
Length = 403
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 125 LKRATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA GI +R +++ NP++F+ +R P Q +P G F G CI
Sbjct: 304 LVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEH 356
Query: 183 YAMLQMKTTISTILRRY 199
A ++ T ST+ +++
Sbjct: 357 LAKAELTTVFSTLYQKF 373
>pdb|1F25|A Chain A, Crystal Structure Of No Complex Of Thr243asn Mutants Of
Cytochrome P450nor
Length = 402
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 125 LKRATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA GI +R +++ NP++F+ +R P Q +P G F G CI
Sbjct: 303 LVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEH 355
Query: 183 YAMLQMKTTISTILRRY 199
A ++ T ST+ +++
Sbjct: 356 LAKAELTTVFSTLYQKF 372
>pdb|1XQD|A Chain A, Crystal Structure Of P450nor Complexed With 3-
Pyridinealdehyde Adenine Dinucleotide
Length = 403
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 125 LKRATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA GI +R +++ NP++F+ +R P Q +P G F G CI
Sbjct: 304 LVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEH 356
Query: 183 YAMLQMKTTISTILRRY 199
A ++ T ST+ +++
Sbjct: 357 LAKAELTTVFSTLYQKF 373
>pdb|1ULW|A Chain A, Crystal Structure Of P450nor Ser73gly/ser75gly Mutant
Length = 402
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 125 LKRATIGIFI--YGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA GI +R +++ NP++F+ +R P Q +P G F G CI
Sbjct: 303 LVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DPLG---FGFGDHRCIAEH 355
Query: 183 YAMLQMKTTISTILRRY 199
A ++ T ST+ +++
Sbjct: 356 LAKAELTTVFSTLYQKF 372
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
Length = 495
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 127 RATIGIFIYGLH----RHPQLWNNPNQFDPDRFLPSQSSH--------RNPSGYVPFSLG 174
+ G +YG R P++++ ++F P+RF+ + P P ++G
Sbjct: 382 KVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETP-TVG 440
Query: 175 PRGCIGSKYAMLQMKTTISTILRRY 199
+ C G + +L + + I RRY
Sbjct: 441 NKQCAGKDFVVLVARLFVIEIFRRY 465
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 127 RATIGIFIYGLH----RHPQLWNNPNQFDPDRFLPSQSSH--------RNPSGYVPFSLG 174
+ G +YG R P++++ ++F P+RF+ + P P ++G
Sbjct: 382 KVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETP-TVG 440
Query: 175 PRGCIGSKYAMLQMKTTISTILRRY 199
+ C G + +L + + I RRY
Sbjct: 441 NKQCAGKDFVVLVARLFVIEIFRRY 465
>pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO8|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMK 189
+ ++I +R +++++ +F PDR NP+ ++ F G C+G+ A L+ +
Sbjct: 278 VRVWIASANRDEEVFHDGEKFIPDR---------NPNPHLSFGSGIHLCLGAPLARLEAR 328
Query: 190 TTISTILRRYK 200
I +R++
Sbjct: 329 IAIEEFSKRFR 339
>pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4- Phenylimidazole Bound
pdb|1F4T|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4- Phenylimidazole Bound
pdb|1F4U|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1F4U|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1IO9|A Chain A, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO9|B Chain B, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO7|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO7|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMK 189
+ ++I +R +++++ +F PDR NP+ ++ F G C+G+ A L+ +
Sbjct: 278 VRVWIASANRDEEVFHDGEKFIPDR---------NPNPHLSFGSGIHLCLGAPLARLEAR 328
Query: 190 TTISTILRRYK 200
I +R++
Sbjct: 329 IAIEEFSKRFR 339
>pdb|2XKR|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cyp142: A
Novel Cholesterol Oxidase
Length = 398
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 151 DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR---YKILPGDKC 207
+P++F RNP+ ++ F G C+G++ A L++ +LRR +++ D
Sbjct: 317 EPEKF----DVQRNPNSHLAFGFGTHFCLGNQLARLELSLMTERVLRRLPDLRLVADDSV 372
Query: 208 KSLQDIRFEFGM 219
L+ F G+
Sbjct: 373 LPLRPANFVSGL 384
>pdb|2JJN|A Chain A, Structure Of Closed Cytochrome P450 Eryk
pdb|2JJO|A Chain A, Structure Of Cytochrome P450 Eryk In Complex With Its
Natural Substrate Erd
pdb|2JJP|A Chain A, Structure Of Cytochrome P450 Eryk In Complex With
Inhibitor Ketoconazole (Kc)
pdb|2XFH|A Chain A, Structure Of Cytochrome P450 Eryk Cocrystallized With
Inhibitor Clotrimazole
Length = 411
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 151 DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDK 206
DPDRF PS+ S + + F G C+G+ A L+ + + I+ R+ L D+
Sbjct: 328 DPDRFDPSRKS--GGAAQLSFGHGVHFCLGAPLARLENRVALEEIIARFGRLTVDR 381
>pdb|2VRV|A Chain A, Structure Of Histidine Tagged Cytochrome P450 Eryk In
Complex With Inhibitor Clotrimazole (Clt)
pdb|2WIO|A Chain A, Structure Of The Histidine Tagged, Open Cytochrome P450
Eryk From S. Erythraea
Length = 431
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 151 DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDK 206
DPDRF PS+ S + + F G C+G+ A L+ + + I+ R+ L D+
Sbjct: 348 DPDRFDPSRKS--GGAAQLSFGHGVHFCLGAPLARLENRVALEEIIARFGRLTVDR 401
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 121 GTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIG 180
G S K + + I R +++ P+ FD R+ S + + GP C G
Sbjct: 317 GASIKKGEMVFLLIPSALRDGTVFSRPDVFD---------VRRDTSASLAYGRGPHVCPG 367
Query: 181 SKYAMLQMKTTISTILRRY 199
A L+ + + TI RR+
Sbjct: 368 VSLARLEAEIAVGTIFRRF 386
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 121 GTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIG 180
G S K + + I R +++ P+ FD R+ S + + GP C G
Sbjct: 317 GASIKKGEMVFLLIPSALRDGTVFSRPDVFD---------VRRDTSASLAYGRGPHVCPG 367
Query: 181 SKYAMLQMKTTISTILRRY 199
A L+ + + TI RR+
Sbjct: 368 VSLARLEAEIAVGTIFRRF 386
>pdb|3TKT|A Chain A, Crystal Structure Of Cyp108d1 From Novosphingobium
Aromaticivorans Dsm12444
Length = 450
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 145 NNPNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKIL 202
++P QF +P +F P++ ++R ++ F G C+G A L+M+ + +L R L
Sbjct: 369 HDPAQFPEPRKFDPTRPANR----HLAFGAGSHQCLGLHLARLEMRVLLDVLLDRVDSL 423
>pdb|1T4K|A Chain A, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
pdb|1T4K|C Chain C, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
Length = 217
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y LP F
Sbjct: 72 GSGTDFTLTISSVQAEDLAIYYCKQSYDLPTF 103
>pdb|1V4R|A Chain A, Solution Structure Of Streptmycal Repressor Trar
Length = 102
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 180 GSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSL 224
G YA + T T+++ ++ PGD S+ DIR +FG+ +++
Sbjct: 10 GKGYA--DVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTV 52
>pdb|1LFK|A Chain A, Crystal Structure Of Oxyb, A Cytochrome P450 Implicated In
An Oxidative Phenol Coupling Reaction During Vancomycin
Biosynthesis
pdb|1LG9|A Chain A, Crystal Structure Of Oxyb, A Cytochrome P450 Implicated In
An Oxidative Phenol Coupling Reaction During Vancomycin
Biosynthesis
pdb|1LGF|A Chain A, Crystal Structure Of Oxyb, A Cytochrome P450 Implicated In
An Oxidative Phenol Coupling Reaction During Vancomycin
Biosynthesis
Length = 398
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 163 RNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKIL 202
R P +V F G C+G+ A L+++T + + RR+ L
Sbjct: 332 REPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPAL 371
>pdb|3VNO|A Chain A, Cytochrome P450sp Alpha (cyp152b1) Mutant R241e
Length = 407
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 98 LPIFICRATKDQSPKCTQLWFAW-GTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFL 156
P + RA++D F W G + + + + +YG + W +P +F P+RF
Sbjct: 280 FPAVVARASQD---------FEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFR 330
Query: 157 PSQSSHRN--PSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR--RYKI 201
N P G LG R C G + MK ++ RY +
Sbjct: 331 AWDEDSFNFIPQGGGDHYLGHR-CPGEWIVLAIMKVAAHLLVNAMRYDV 378
>pdb|2GKI|A Chain A, Heavy And Light Chain Variable Single Domains Of An
Anti-dna Binding Antibody Hydrolyze Both Double- And
Single-stranded Dnas Without Sequence Specificity
pdb|2GKI|B Chain B, Heavy And Light Chain Variable Single Domains Of An
Anti-dna Binding Antibody Hydrolyze Both Double- And
Single-stranded Dnas Without Sequence Specificity
Length = 291
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC----YHLPIF 101
GS DF LT+SS E+L YC YH+ F
Sbjct: 230 GSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTF 262
>pdb|3VOO|A Chain A, Cytochrome P450sp Alpha (cyp152b1) Mutant A245e
Length = 407
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 98 LPIFICRATKDQSPKCTQLWFAW-GTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFL 156
P + RA++D F W G + + + + +YG + W +P +F P+RF
Sbjct: 280 FPAVVARASQD---------FEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFR 330
Query: 157 PSQSSHRN--PSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR--RYKI 201
N P G LG R C G + MK ++ RY +
Sbjct: 331 AWDEDSFNFIPQGGGDHYLGHR-CPGEWIVLAIMKVAAHLLVNAMRYDV 378
>pdb|3VM4|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) In Complex With
(R)-Ibuprophen
Length = 407
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 98 LPIFICRATKDQSPKCTQLWFAW-GTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFL 156
P + RA++D F W G + + + + +YG + W +P +F P+RF
Sbjct: 280 FPAVVARASQD---------FEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFR 330
Query: 157 PSQSSHRN--PSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR--RYKI 201
N P G LG R C G + MK ++ RY +
Sbjct: 331 AWDEDSFNFIPQGGGDHYLGHR-CPGEWIVLAIMKVAAHLLVNAMRYDV 378
>pdb|3BD3|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD3|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD4|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD4|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD5|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD5|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
Length = 112
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC----YHLPIF 101
GS DF LT+SS E+L YC YH+ F
Sbjct: 71 GSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTF 103
>pdb|3CV8|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84f Mutant)
Length = 412
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 125 LKRATIGIFIYG--LHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA G+ + +R ++ +P+ D HR+ ++ F G C+G
Sbjct: 309 LIRAGEGVIVVNSIANRDGTVYEDPDALD---------IHRSARHHLAFGFGVHQCLGQN 359
Query: 183 YAMLQMKTTISTILRRYKIL 202
A L+++ ++ ++ R L
Sbjct: 360 LARLELEVILNALMDRVPTL 379
>pdb|3AWQ|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Mutant L78f
Length = 415
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 98 LPIFICRATKDQSPKCTQLWFAW-GTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFL 156
P + RA++D F W G + + + + +YG + W +P +F P+RF
Sbjct: 288 FPAVVARASQD---------FEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFR 338
Query: 157 PSQSSHRN--PSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR--RYKI 201
N P G LG R C G + MK ++ RY +
Sbjct: 339 AWDEDSFNFIPQGGGDHYLGHR-CPGEWIVLAIMKVAAHLLVNAMRYDV 386
>pdb|2ZBX|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (Wild Type) With Imidazole Bound
Length = 412
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 125 LKRATIGIFIYG--LHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA G+ + +R ++ +P+ D HR+ ++ F G C+G
Sbjct: 309 LIRAGEGVIVVNSIANRDGTVYEDPDALD---------IHRSARHHLAFGFGVHQCLGQN 359
Query: 183 YAMLQMKTTISTILRRYKIL 202
A L+++ ++ ++ R L
Sbjct: 360 LARLELEVILNALMDRVPTL 379
>pdb|3AWM|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Wild-Type With Palmitic
Acid
Length = 415
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 98 LPIFICRATKDQSPKCTQLWFAW-GTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFL 156
P + RA++D F W G + + + + +YG + W +P +F P+RF
Sbjct: 288 FPAVVARASQD---------FEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFR 338
Query: 157 PSQSSHRN--PSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR--RYKI 201
N P G LG R C G + MK ++ RY +
Sbjct: 339 AWDEDSFNFIPQGGGDHYLGHR-CPGEWIVLAIMKVAAHLLVNAMRYDV 386
>pdb|2ZBY|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant)
pdb|2ZBZ|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant) In Complex With
1,25-Dihydroxyvitamin D3
Length = 412
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 125 LKRATIGIFIYG--LHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA G+ + +R ++ +P+ D HR+ ++ F G C+G
Sbjct: 309 LIRAGEGVIVVNSIANRDGTVYEDPDALD---------IHRSARHHLAFGFGVHQCLGQN 359
Query: 183 YAMLQMKTTISTILRRYKIL 202
A L+++ ++ ++ R L
Sbjct: 360 LARLELEVILNALMDRVPTL 379
>pdb|3CV9|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R73aR84A MUTANT) IN COMPLEX WITH 1ALPHA,25-
Dihydroxyvitamin D3
Length = 412
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 125 LKRATIGIFIYG--LHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSK 182
L RA G+ + +R ++ +P+ D HR+ ++ F G C+G
Sbjct: 309 LIRAGEGVIVVNSIANRDGTVYEDPDALD---------IHRSARHHLAFGFGVHQCLGQN 359
Query: 183 YAMLQMKTTISTILRRYKIL 202
A L+++ ++ ++ R L
Sbjct: 360 LARLELEVILNALMDRVPTL 379
>pdb|3AWP|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Mutant F288g
Length = 415
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 99 PIFICRATKDQSPKCTQLWFAW-GTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFLP 157
P + RA++D F W G + + + + +YG + W +P +F P+RF
Sbjct: 289 PAVVARASQD---------FEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRA 339
Query: 158 SQSSHRN--PSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR--RYKI 201
N P G LG R C G + MK ++ RY +
Sbjct: 340 WDEDSFNFIPQGGGDHYLGHR-CPGEWIVLAIMKVAAHLLVNAMRYDV 386
>pdb|2AP2|A Chain A, Single Chain Fv Of C219 In Complex With Synthetic Epitope
Peptide
pdb|2AP2|C Chain C, Single Chain Fv Of C219 In Complex With Synthetic Epitope
Peptide
Length = 115
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E+L YC Y P+ TK
Sbjct: 75 GSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTK 112
>pdb|1MVU|A Chain A, Single Chain Fv Of C219 Heavy Chain V101l Mutant In
Complex With Synthetic Epitope Peptide
Length = 114
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E+L YC Y P+ TK
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTK 109
>pdb|1AP2|A Chain A, Single Chain Fv Of C219
pdb|1AP2|C Chain C, Single Chain Fv Of C219
Length = 113
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E+L YC Y P+ TK
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTK 109
>pdb|2NZ5|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZ5|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
Length = 413
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
+R P ++ +P++ D DR +P+ ++ + G C G+ A +Q + + T+L
Sbjct: 325 NRDPDVFPDPDRIDLDR---------DPNPHLAYGNGHHFCTGAVLARMQTELLVDTLLE 375
Query: 198 RYKILPG 204
R LPG
Sbjct: 376 R---LPG 379
>pdb|3SN5|A Chain A, Crystal Structure Of Human Cyp7a1 In Complex With
Cholest-4-En-3-One
pdb|3SN5|B Chain B, Crystal Structure Of Human Cyp7a1 In Complex With
Cholest-4-En-3-One
pdb|3V8D|A Chain A, Crystal Structure Of Human Cyp7a1 In Complex With
7-Ketocholesterol
pdb|3V8D|B Chain B, Crystal Structure Of Human Cyp7a1 In Complex With
7-Ketocholesterol
Length = 491
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNP---SG------YVPFSLGPR 176
K I ++ +H P+++ +P F DR+L + +G Y+PF G
Sbjct: 366 KDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGAT 425
Query: 177 GCIGSKYAMLQMKTTISTILRRY--KILPGD-KCKSLQDIRFEFGMTMRSLPGNDIRIE 232
C G +A+ ++K + +L + +++ G KC L R G+ P NDI +
Sbjct: 426 ICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILP---PLNDIEFK 481
>pdb|2DKK|A Chain A, Structure/function Studies Of Cytochrome P450 158a1 From
Streptomyces Coelicolor A3(2)
Length = 411
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
+R P ++ +P++ D DR +P+ ++ + G C G+ A +Q + + T+L
Sbjct: 325 NRDPDVFPDPDRIDLDR---------DPNPHLAYGNGHHFCTGAVLARMQTELLVDTLLE 375
Query: 198 RYKILPG 204
R LPG
Sbjct: 376 R---LPG 379
>pdb|3DAX|A Chain A, Crystal Structure Of Human Cyp7a1
pdb|3DAX|B Chain B, Crystal Structure Of Human Cyp7a1
Length = 491
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNP---SG------YVPFSLGPR 176
K I ++ +H P+++ +P F DR+L + +G Y+PF G
Sbjct: 366 KDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGAT 425
Query: 177 GCIGSKYAMLQMKTTISTILRRY--KILPGD-KCKSLQDIRFEFGMTMRSLPGNDIRIE 232
C G +A+ ++K + +L + +++ G KC L R G+ P NDI +
Sbjct: 426 ICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILP---PLNDIEFK 481
>pdb|2Z36|A Chain A, Crystal Structure Of Cytochrome P450 Moxa From Nonomuraea
Recticatena (Cyp105)
pdb|2Z36|B Chain B, Crystal Structure Of Cytochrome P450 Moxa From Nonomuraea
Recticatena (Cyp105)
Length = 413
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 141 PQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
P ++ +P D +R ++ F GP C+G A ++++ T+ RR
Sbjct: 328 PAVFKDPAVLDVER---------GARHHLAFGFGPHQCLGQNLARMELQIVFDTLFRR 376
>pdb|1T2Q|L Chain L, The Crystal Structure Of An Nna7 Fab That Recognizes An
N-Type Blood Group Antigen
Length = 217
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCY---HLPIFICRATK 107
GS DF LT+S E+L YC+ H+P+ TK
Sbjct: 71 GSGTDFTLTISRVEAEDLGVYYCFQGSHVPLTFGAGTK 108
>pdb|2D03|L Chain L, Crystal Structure Of The G91s Mutant Of The Nna7 Fab
Length = 217
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCY---HLPIFICRATK 107
GS DF LT+S E+L YC+ H+P+ TK
Sbjct: 71 GSGTDFTLTISRVEAEDLGVYYCFQSSHVPLTFGAGTK 108
>pdb|3R1G|L Chain L, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 214
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYHLPIFI 102
GS DF LT+SS E+ YC P ++
Sbjct: 66 GSGTDFTLTISSLQPEDFATYYCQQFPTYL 95
>pdb|3QOS|L Chain L, Crystal Structure Of Human Germline Antibody 3-23B3
pdb|3QOS|A Chain A, Crystal Structure Of Human Germline Antibody 3-23B3
Length = 220
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P+ + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSTPLTFGQGTK 109
>pdb|3QOT|L Chain L, Crystal Structure Of Human Germline Antibody 1-69B3
Length = 221
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P+ + TK
Sbjct: 73 GSGTDFTLTISSLQAEDVAVYYCQQYYSTPLTFGQGTK 110
>pdb|3I02|A Chain A, Crystal Structure Of S54-10 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
pdb|3I02|C Chain C, Crystal Structure Of S54-10 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
Length = 219
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E+L YC Y+L F R TK
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCKQSYNLRTF-GRGTK 108
>pdb|3Q3G|C Chain C, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|A Chain A, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|F Chain F, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|J Chain J, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|C Chain C, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|A Chain A, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|F Chain F, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|J Chain J, Crystal Structure Of A-Domain In Complex With Antibody
Length = 220
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E+L YC Y P+ TK
Sbjct: 72 GSGTDFTLTISSVKAEDLAVYYCQQYYSYPLTFGAGTK 109
>pdb|1S3K|L Chain L, Crystal Structure Of A Humanized Fab (Hu3s193) In Complex
With The Lewis Y Tetrasaccharide
pdb|3EYV|L Chain L, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
pdb|3EYV|A Chain A, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
Length = 219
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCY---HLPIFICRATKDQ 109
GS DF T+SS E++ YC+ H+P + TK Q
Sbjct: 71 GSGTDFTFTISSLQPEDIATYYCFQGSHVPFTFGQGTKLQ 110
>pdb|1IL1|B Chain B, Crystal Structure Of G3-519, An Anti-Hiv Monoclonal
Antibody
Length = 219
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC YH F
Sbjct: 72 GSGTDFTLTISSVKAEDLAVYYCQQYYHYRTF 103
>pdb|1IFH|L Chain L, A Detailed Analysis Of The Free And Bound Conformation Of
An Antibody: X-Ray Structures Of Anti-Peptide Fab
17(Slash)9 And Three Different Fab-Peptide Complexes
Length = 218
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 18/66 (27%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTS-DLKRA--- 128
GS DF LT+SS E+L YC Q+ L F GT +LKRA
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYC-------------QNDYSNPLTFGGGTKLELKRADAA 118
Query: 129 -TIGIF 133
T+ IF
Sbjct: 119 PTVSIF 124
>pdb|3HZK|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo
pdb|3HZM|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo
pdb|3HZV|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.8) Kdo(2.4)kdo
Length = 219
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCKQSYNLRTF 103
>pdb|1Q9O|A Chain A, S45-18 Fab Unliganded
pdb|1Q9O|C Chain C, S45-18 Fab Unliganded
pdb|1Q9W|A Chain A, S45-18 Fab Pentasaccharide Bisphosphate Complex
pdb|1Q9W|C Chain C, S45-18 Fab Pentasaccharide Bisphosphate Complex
Length = 219
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCKQSYNLRTF 103
>pdb|1HIL|A Chain A, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIL|C Chain C, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIM|H Chain H, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIM|J Chain J, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIN|L Chain L, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
Length = 217
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 18/66 (27%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTS-DLKRA--- 128
GS DF LT+SS E+L YC Q+ L F GT +LKRA
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYC-------------QNDYSNPLTFGGGTKLELKRADAA 118
Query: 129 -TIGIF 133
T+ IF
Sbjct: 119 PTVSIF 124
>pdb|3HZY|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
Length = 219
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCKQSYNLRTF 103
>pdb|3OKK|A Chain A, Crystal Structure Of S25-39 In Complex With Kdo(2.4)kdo
Length = 220
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 72 GSGTDFALTISSVQAEDLAVYYCKQSYNLRTF 103
>pdb|3OKD|A Chain A, Crystal Structure Of S25-39 In Complex With Kdo
pdb|3OKE|A Chain A, Crystal Structure Of S25-39 In Complex With Ko
pdb|3OKL|A Chain A, Crystal Structure Of S25-39 In Complex With Kdo(2.8)kdo
pdb|3OKM|A Chain A, Crystal Structure Of Unliganded S25-39
pdb|3OKN|A Chain A, Crystal Structure Of S25-39 In Complex With
Kdo(2.4)kdo(2.4)kdo
pdb|3OKO|A Chain A, Crystal Structure Of S25-39 In Complex With
Kdo(2.8)kdo(2.4)kdo
Length = 219
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 72 GSGTDFALTISSVQAEDLAVYYCKQSYNLRTF 103
>pdb|1ZA6|A Chain A, The Structure Of An Antitumor Ch2-Domain-Deleted Humanized
Antibody
pdb|1ZA6|C Chain C, The Structure Of An Antitumor Ch2-Domain-Deleted Humanized
Antibody
pdb|1ZA6|E Chain E, The Structure Of An Antitumor Ch2-Domain-Deleted Humanized
Antibody
pdb|1ZA6|G Chain G, The Structure Of An Antitumor Ch2-Domain-Deleted Humanized
Antibody
Length = 220
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P+ TK
Sbjct: 72 GSGTDFTLTISSVQAEDVAVYYCQQYYSYPLTFGAGTK 109
>pdb|2Y46|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y46|B Chain B, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y46|C Chain C, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In C 2 2 21 Space Group
pdb|2Y5N|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin V In P21 Space Group
pdb|2Y5N|B Chain B, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin V In P21 Space Group
pdb|2Y5Z|A Chain A, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y5Z|B Chain B, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y5Z|C Chain C, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In C2221 Space Group
pdb|2Y98|A Chain A, Structure Of The Mixed-Function P450 Mycg In Complex With
Mycinamicin Iv In P21212 Space Group
pdb|2YGX|A Chain A, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|B Chain B, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|C Chain C, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YGX|D Chain D, Structure Of The Mixed-Function P450 Mycg In P21 Space
Group
pdb|2YCA|A Chain A, Mixed-Function P450 Mycg In Complex With Mycinamicin Iii
In P21212 Space Group
Length = 417
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 145 NNPNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILP 203
+ QF D DR R P+ ++ F G C+G+ A ++++ + +L+R LP
Sbjct: 336 RDQAQFPDADRI----DVDRTPNQHLGFGHGVHHCLGAPLARVELQVALEVLLQR---LP 388
Query: 204 GDKCKSLQ-DIRFEFGMTMR 222
G + + +R+ GM +R
Sbjct: 389 GIRLGIPETQLRWSEGMLLR 408
>pdb|4AW3|A Chain A, Structure Of The Mixed-Function P450 Mycg F286v Mutant In
Complex With Mycinamicin V In P1 Space Group
pdb|4AW3|B Chain B, Structure Of The Mixed-Function P450 Mycg F286v Mutant In
Complex With Mycinamicin V In P1 Space Group
Length = 417
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 145 NNPNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILP 203
+ QF D DR R P+ ++ F G C+G+ A ++++ + +L+R LP
Sbjct: 336 RDQAQFPDADRI----DVDRTPNQHLGFGHGVHHCLGAPLARVELQVALEVLLQR---LP 388
Query: 204 GDKCKSLQ-DIRFEFGMTMR 222
G + + +R+ GM +R
Sbjct: 389 GIRLGIPETQLRWSEGMLLR 408
>pdb|3MBX|L Chain L, Crystal Structure Of Chimeric Antibody X836
Length = 220
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E+L YC Y P TK
Sbjct: 72 GSGTDFTLTISSVKAEDLAVYYCQQYYSYPFTFGSGTK 109
>pdb|3ZSN|A Chain A, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
pdb|3ZSN|B Chain B, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
pdb|3ZSN|C Chain C, Structure Of The Mixed-Function P450 Mycg F286a Mutant In
Complex With Mycinamicin Iv
Length = 417
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 145 NNPNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILP 203
+ QF D DR R P+ ++ F G C+G+ A ++++ + +L+R LP
Sbjct: 336 RDQAQFPDADRI----DVDRTPNQHLGFGHGVHHCLGAPLARVELQVALEVLLQR---LP 388
Query: 204 GDKCKSLQ-DIRFEFGMTMR 222
G + + +R+ GM +R
Sbjct: 389 GIRLGIPETQLRWSEGMLLR 408
>pdb|1LVE|A Chain A, Structure Of The Variable Domain Of Human Immunoglobulin
K- 4 Light Chain Len
Length = 122
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTK 109
>pdb|3CSY|B Chain B, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|D Chain D, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|F Chain F, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|H Chain H, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
Length = 217
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P+ TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSAPLTFGGGTK 109
>pdb|3INU|L Chain L, Crystal Structure Of An Unbound Kz52 Neutralizing
Anti-Ebolavirus Antibody.
pdb|3INU|N Chain N, Crystal Structure Of An Unbound Kz52 Neutralizing
Anti-Ebolavirus Antibody
Length = 217
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P+ TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSAPLTFGGGTK 109
>pdb|3LVE|A Chain A, Len Q38e Mutant: A Domain Flip From A Single Amino Acid
Substitution
Length = 114
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTK 109
>pdb|2LVE|A Chain A, Recombinant Len
Length = 114
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTK 109
>pdb|5LVE|A Chain A, Structure Of The Variable Domain Of Human Immunoglobulin
K-4 Light Chain Len
Length = 114
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCAQYYSTPYSFGQGTK 109
>pdb|4LVE|A Chain A, Len K30t Mutant: A Domain Flip As A Result Of A Single
Amino Acid Substitution
pdb|4LVE|B Chain B, Len K30t Mutant: A Domain Flip As A Result Of A Single
Amino Acid Substitution
Length = 114
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTK 109
>pdb|4HG4|K Chain K, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|M Chain M, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|O Chain O, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Q Chain Q, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|S Chain S, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|U Chain U, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|W Chain W, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Y Chain Y, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|ZZ Chain z, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 214
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 56 LLLNKSLNAPTNGPV-FRGSSD--DFILTLSSQMGENLTCLYCY---HLPIFICRATK 107
LL+ + N T P FRGS DF T+SS E++ YC +LPI + T+
Sbjct: 46 LLIYDASNVKTGVPSRFRGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGTR 103
>pdb|1EFQ|A Chain A, Q38d Mutant Of Len
Length = 114
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTK 109
>pdb|1QAC|A Chain A, Change In Dimerization Mode By Removal Of A Single
Unsatisfied Polar Residue
pdb|1QAC|B Chain B, Change In Dimerization Mode By Removal Of A Single
Unsatisfied Polar Residue
Length = 114
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCLQYYSTPYSFGQGTK 109
>pdb|3CXY|A Chain A, Crystal Structure Of The Cytochrome P450 Cyp121 P346l
Mutant From M. Tuberculosis
Length = 396
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 132 IFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTT 191
+ + G + P+ + NP + DR NP+ ++ F G C+GS +
Sbjct: 307 VLLEGANFDPEHFPNPGSIELDR--------PNPTSHLAFGRGQHFCLGSALGRRHAQIG 358
Query: 192 ISTILRRYKILPG 204
I +L++ +PG
Sbjct: 359 IEALLKK---MPG 368
>pdb|3M6Y|A Chain A, Structure Of 4-Hydroxy-2-Oxoglutarate Aldolase From
Bacillus Cereus At 1.45 A Resolution.
pdb|3M6Y|B Chain B, Structure Of 4-Hydroxy-2-Oxoglutarate Aldolase From
Bacillus Cereus At 1.45 A Resolution.
pdb|3M6Y|C Chain C, Structure Of 4-Hydroxy-2-Oxoglutarate Aldolase From
Bacillus Cereus At 1.45 A Resolution.
pdb|3M6Y|D Chain D, Structure Of 4-Hydroxy-2-Oxoglutarate Aldolase From
Bacillus Cereus At 1.45 A Resolution
Length = 275
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 148 NQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTI 195
N + D ++ S S GYV S GP G + A++ +KT I+ +
Sbjct: 130 NLGEKDSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVPIKTAIALV 177
>pdb|1CK0|L Chain L, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Unliganded Form
pdb|2CK0|L Chain L, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Complex With A Synthetic Cyclic Peptide
pdb|3CK0|L Chain L, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Complex With Human Angiotensin Ii
Length = 216
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCKQSYNLYTF 103
>pdb|1MHH|A Chain A, Antibody-Antigen Complex
pdb|1MHH|C Chain C, Antibody-Antigen Complex
Length = 220
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 72 RGSSDDFILTLSSQMGENLTCLYC 95
RGS DF LT+SS E+ YC
Sbjct: 71 RGSGTDFTLTISSVQAEDQAVYYC 94
>pdb|1ZTX|L Chain L, West Nile Virus Envelope Protein Diii In Complex With
Neutralizing E16 Antibody Fab
Length = 212
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 18/66 (27%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTS-DLKRA--- 128
GS D+ LT+SS E+L YC Q T L F GT +LKRA
Sbjct: 66 GSGTDYTLTISSVQAEDLALYYC-------------QQHYTTPLTFGAGTKLELKRADAA 112
Query: 129 -TIGIF 133
T+ IF
Sbjct: 113 PTVSIF 118
>pdb|2I9L|A Chain A, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|C Chain C, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|E Chain E, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|G Chain G, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
Length = 219
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCKQSYNLWTF 103
>pdb|2XRA|L Chain L, Crystal Structure Of The Hk20 Fab In Complex With A Gp41
Mimetic 5-Helix
Length = 215
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTS-DLKR--AT 129
GS DF T+SS E+L YC H D P+ T F GT ++KR A
Sbjct: 66 GSGTDFTFTISSLQPEDLATYYCQHY---------DDLPRIT---FGQGTRLEIKRTVAA 113
Query: 130 IGIFIY 135
+FI+
Sbjct: 114 PSVFIF 119
>pdb|1MCP|L Chain L, Phosphocholine Binding Immunoglobulin Fab McPC603. AN
X-Ray Diffraction Study At 2.7 Angstroms
pdb|2MCP|L Chain L, Refined Crystal Structure Of The Mc/pc603
Fab-phosphocholine Complex At 3.1 Angstroms Resolution
Length = 220
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 18/66 (27%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTS-DLKRA--- 128
GS DF LT+SS E+L YC Q+ L F GT ++KRA
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYC-------------QNDHSYPLTFGAGTKLEIKRADAA 118
Query: 129 -TIGIF 133
T+ IF
Sbjct: 119 PTVSIF 124
>pdb|4H20|L Chain L, Crystal Structure And Computational Modeling Of The Fab
Fragment From The Protective Anti-ricin Monoclonal
Antibody Rac18
Length = 214
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 18/66 (27%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTS-DLKRA--- 128
GS DF T+SS E+L YC Q T L F GT +LKRA
Sbjct: 66 GSGTDFTFTISSVQAEDLAVYYC-------------QQHYGTPLTFGAGTKLELKRADAA 112
Query: 129 -TIGIF 133
T+ IF
Sbjct: 113 PTVSIF 118
>pdb|3V6F|B Chain B, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|D Chain D, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|F Chain F, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|L Chain L, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6Z|B Chain B, Crystal Structure Of Hepatitis B Virus E-antigen
pdb|3V6Z|D Chain D, Crystal Structure Of Hepatitis B Virus E-antigen
Length = 219
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYH 97
GS DF LT+SS E+L YC+
Sbjct: 72 GSGTDFTLTISSVQTEDLAVYYCHQ 96
>pdb|1PKQ|A Chain A, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|F Chain F, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 241
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYH 97
GS DF LT+SS E+L YC +
Sbjct: 93 GSGTDFTLTISSVQAEDLAVYYCQN 117
>pdb|1N64|L Chain L, Crystal Structure Analysis Of The Immunodominant
Antigenic Site On Hepatitis C Virus Protein Bound To
Mab 19d9d6
pdb|1NLB|L Chain L, Crystal Structure Of Anti-Hcv Monoclonal Antibody 19d9d6
pdb|1XCQ|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|E Chain E, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|G Chain G, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCT|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (D55a,
L57h, Y64w) In Space Group P21212
pdb|1XCT|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (D55a,
L57h, Y64w) In Space Group P21212
pdb|1XF5|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c,
Y64w)in Space Group P21212
pdb|1XF5|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c,
Y64w)in Space Group P21212
pdb|1YMH|A Chain A, Anti-hcv Fab 19d9d6 Complexed With Protein L (ppl)
Mutant A66w
pdb|1YMH|C Chain C, Anti-hcv Fab 19d9d6 Complexed With Protein L (ppl)
Mutant A66w
Length = 220
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 72 RGSSDDFILTLSSQMGENLTCLYC 95
RGS DF LT+SS E+ YC
Sbjct: 71 RGSGTDFTLTISSVQAEDQAVYYC 94
>pdb|2IMM|A Chain A, Refined Crystal Structure Of A Recombinant Immunoglobulin
Domain And A Complementarity-Determining Region
1-Grafted Mutant
Length = 114
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E+L YC + P+ TK
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCQNDHSYPLTFGAGTK 109
>pdb|2IMN|A Chain A, Refined Crystal Structure Of A Recombinant Immunoglobulin
Domain And A Complementarity-Determining Region
1-Grafted Mutant
Length = 113
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E+L YC + P+ TK
Sbjct: 71 GSGTDFTLTISSVQAEDLAVYYCQNDHSYPLTFGAGTK 108
>pdb|1SBS|L Chain L, Crystal Structure Of An Anti-Hcg Fab
Length = 220
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC--YH 97
GS DF LT+SS E+L YC YH
Sbjct: 72 GSGTDFTLTISSVEAEDLAVYYCQQYH 98
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain
Length = 154
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPN------------QFDPDRFLPSQSSHRNPSGYVPFSL 173
+RA + FI L R+P+L+N+P+ Q DP +S+ + S +L
Sbjct: 84 RRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQSDPSEDEDERSTSKPHSTSRNINL 143
Query: 174 GPRGCIGSK 182
GP G +K
Sbjct: 144 GPTGNPHAK 152
>pdb|2ZUQ|B Chain B, Crystal Structure Of Dsbb-Fab Complex
pdb|2ZUQ|E Chain E, Crystal Structure Of Dsbb-Fab Complex
pdb|2LTQ|B Chain B, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
pdb|2LTQ|E Chain E, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
Length = 239
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 92 GSGTDFTLTISSVQAEDLAVYYCKQSYNLYTF 123
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC 95
GS DF LT+SS E+L YC
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYC 94
>pdb|3GKW|L Chain L, Crystal Structure Of The Fab Fragment Of Nimotuzumab. An
Anti- Epidermal Growth Factor Receptor Antibody
Length = 219
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCY---HLPIFICRATKDQ 109
GS DF T+SS E++ YC+ H+P + TK Q
Sbjct: 71 GSGTDFTFTISSLQPEDIATYYCFQYSHVPWTFGQGTKLQ 110
>pdb|3KJ4|L Chain L, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|B Chain B, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 219
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT+SS E+L YC Y+L F
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYCMQSYNLFTF 103
>pdb|3W11|D Chain D, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With Human Insulin, Alpha-ct
Peptide(704-719) And Fab 83-7
pdb|3W12|D Chain D, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With High-affinity Insulin Analogue
[d-pro-b26]-dti-nh2, Alpha-ct Peptide(704-719) And Fab
83-7
pdb|3W13|D Chain D, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With High-affinity Insulin Analogue
[d-pro-b26]-dti-nh2, Alphact Peptide(693-719) And Fab
83-7
Length = 114
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC 95
GS DF LT+SS E+L YC
Sbjct: 72 GSGTDFTLTISSVKAEDLAVYYC 94
>pdb|1FRG|L Chain L, Crystal Structure, Sequence, And Epitope Mapping Of A
Peptide Complex Of An Anti-Influenza Ha Peptide Antibody
Fab 26(Slash)9: Fine-Tuning Antibody Specificity
Length = 217
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT++S E+L YC Y P+ TK
Sbjct: 72 GSGTDFTLTITSVQAEDLAIYYCQNDYSHPLTFGAGTK 109
>pdb|3ZTJ|H Chain H, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|J Chain J, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|L Chain L, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTN|L Chain L, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H1 Influenza Haemagglutinin
Length = 218
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 70 GSGTDFTLTISSLQAEDVAVYYCQQHYRTPPTFGQGTK 107
>pdb|3B6H|A Chain A, Crystal Structure Of Human Prostacyclin Synthase In
Complex With Inhibitor Minoxidil
pdb|3B6H|B Chain B, Crystal Structure Of Human Prostacyclin Synthase In
Complex With Inhibitor Minoxidil
Length = 498
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSH---------RNPSGYVPFSLGPRGCIGSKYAMLQM 188
R P+++ +P F +RFL S R + +P+ G C+G YA+ +
Sbjct: 382 QRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRSYAVNSI 441
Query: 189 KTTISTIL 196
K + +L
Sbjct: 442 KQFVFLVL 449
>pdb|1H3P|L Chain L, Structural Characterisation Of A Monoclonal Antibody
Specific For The Pres1 Region Of The Hepatitis B Virus
Length = 240
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC 95
GS DF LT+SS E+L YC
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYC 94
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC 95
GS DF LT+SS E+L YC
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYC 94
>pdb|1Q9K|A Chain A, S25-2 Fab Unliganded 1
pdb|1Q9L|A Chain A, S25-2 Fab Unliganded 2
pdb|1Q9L|C Chain C, S25-2 Fab Unliganded 2
pdb|2R1W|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R1X|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R1Y|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R23|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2B|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2E|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2H|A Chain A, Structure Of S25-2 In Complex With Ko
pdb|3BPC|A Chain A, Co-Crystal Structure Of S25-2 Fab In Complex With
5-Deoxy-4- Epi-2,3-Dehydro Kdo (4.8) Kdo
pdb|3SY0|A Chain A, S25-2- A(2-8)-A(2-4)kdo Trisaccharide Complex
pdb|3T4Y|A Chain A, S25-2- Kdo Monosaccharide Complex
pdb|3T65|A Chain A, S25-2- A(2-8)kdo Disaccharide Complex
pdb|3T77|A Chain A, S25-2- A(2-4)kdo Disaccharide Complex
pdb|4HGW|A Chain A, Crystal Structure Of S25-2 In Complex With A
5,6-dehydro-kdo Disaccharide
Length = 219
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS DF LT++S E+L YC Y+L F
Sbjct: 72 GSGTDFTLTITSVQAEDLAVYYCKQSYNLRTF 103
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC 95
GS DF LT+SS E+L YC
Sbjct: 72 GSGTDFTLTISSVQAEDLAVYYC 94
>pdb|2IAG|A Chain A, Crystal Structure Of Human Prostacyclin Synthase
pdb|2IAG|B Chain B, Crystal Structure Of Human Prostacyclin Synthase
Length = 482
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSH---------RNPSGYVPFSLGPRGCIGSKYAMLQMK 189
R P+++ +P F +RFL S R + +P+ G C+G YA+ +K
Sbjct: 371 RDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRSYAVNSIK 430
Query: 190 TTISTIL 196
+ +L
Sbjct: 431 QFVFLVL 437
>pdb|1EEQ|A Chain A, M4lY(27D)DT94H MUTANT OF LEN
pdb|1EEQ|B Chain B, M4lY(27D)DT94H MUTANT OF LEN
Length = 114
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSHPYSFGQGTK 109
>pdb|1EEU|A Chain A, M4lY(27D)DQ89DT94H MUTANT OF LEN
pdb|1EEU|B Chain B, M4lY(27D)DQ89DT94H MUTANT OF LEN
Length = 114
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P + TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCDQYYSHPYSFGQGTK 109
>pdb|3QRG|L Chain L, Crystal Structure Of Antirsvf Fab B21m
Length = 218
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYHL 98
GS DF LT+SS E++ YC +
Sbjct: 70 GSGTDFTLTISSLQAEDVAVYYCQQI 95
>pdb|3IY6|A Chain A, Variable Domains Of The Computer Generated Model (Wam)
Of Fab E Fitted Into The Cryoem Reconstruction Of The
Virus- Fab E Complex
Length = 107
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 52 QCVGLLLNKSLNAPTNGP---VFRGSSDDFILTLSSQMGENLTCLYCYH 97
Q LL+ K+ N T P GS DF T+S+ E+L YC
Sbjct: 40 QSPNLLIYKASNRNTGVPDRFTGSGSGTDFTFTISNMQAEDLAVYYCMQ 88
>pdb|1I9R|L Chain L, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|M Chain M, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|Y Chain Y, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
Length = 218
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCYH 97
GS DF LT+SS E+ YC H
Sbjct: 70 GSGTDFTLTISSVEPEDFATYYCQH 94
>pdb|2DTG|B Chain B, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
pdb|3LOH|B Chain B, Structure Of The Insulin Receptor Ectodomain, Including
Ct P
Length = 219
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC 95
GS DF LT+SS E+L YC
Sbjct: 72 GSGTDFTLTISSVKAEDLAVYYC 94
>pdb|3N73|A Chain A, Crystal Structure Of A Putative 4-Hydroxy-2-Oxoglutarate
Ald Bacillus Cereus
pdb|3N73|B Chain B, Crystal Structure Of A Putative 4-Hydroxy-2-Oxoglutarate
Ald Bacillus Cereus
Length = 251
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 153 DRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTI 195
D ++ S S GYV S GP G + A++ +KT I+ +
Sbjct: 111 DSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVPIKTAIALV 153
>pdb|3MUX|A Chain A, The Crystal Structure Of A Putative
4-Hydroxy-2-Oxoglutarate From Bacillus Anthracis To
1.45a
pdb|3MUX|B Chain B, The Crystal Structure Of A Putative
4-Hydroxy-2-Oxoglutarate From Bacillus Anthracis To
1.45a
Length = 251
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 153 DRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTI 195
D ++ S S GYV S GP G + A++ +KT I+ +
Sbjct: 111 DSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVPIKTAIALV 153
>pdb|1B4J|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 214
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS+ DF LT+SS E+L +C Y+ P TK
Sbjct: 66 GSATDFTLTISSVQAEDLADYHCGQSYNYPFTFGSGTK 103
>pdb|2OJZ|L Chain L, Anti-Dna Antibody Ed10
pdb|2OJZ|M Chain M, Anti-Dna Antibody Ed10
pdb|2OK0|L Chain L, Fab Ed10-Dna Complex
Length = 219
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYCY---HLPIFICRATK 107
GS DF L +S E+L YC+ H+P+ TK
Sbjct: 71 GSGTDFTLKISRVEAEDLGVYYCFQGSHIPLTFGAGTK 108
>pdb|2G5B|A Chain A, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|C Chain C, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|E Chain E, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|G Chain G, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide
Length = 217
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIF 101
GS +F LT+SS E+L YC Y+L F
Sbjct: 72 GSGTEFTLTISSVQAEDLAVYYCKQSYNLRTF 103
>pdb|2X9P|A Chain A, X-Ray Structure Of The Substrate-Free Cytochrome P450 Pimd
- A Polyene Macrolide Antibiotic Pimaricin Epoxidase
pdb|2XBK|A Chain A, X-Ray Structure Of The Substrate-Bound Cytochrome P450
Pimd - A Polyene Macrolide Antibiotic Pimaricin
Epoxidase
Length = 404
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 111 PKCTQLWFAWGTSDLKRATIGIFIYGLHR-HPQLWNNPNQFDPDRFLPSQSSHRNPSGYV 169
P+ +G ++ + +F GL + + P +FD + R P+ ++
Sbjct: 294 PRYASEDMEFGGVTIRAGDLVLFDLGLPNFDERAFTGPEEFD---------AARTPNPHL 344
Query: 170 PFSLGPRGCIGSKYAMLQMKTTISTILRR 198
F G CIG+ A L+++T + + R
Sbjct: 345 TFGHGIWHCIGAPLARLELRTMFTKLFTR 373
>pdb|1A5F|L Chain L, Fab Fragment Of A Monoclonal Anti-E-Selectin Antibody
Length = 220
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF L++S E+L YC Y+ P+ TK
Sbjct: 72 GSGTDFTLSISGVQAEDLAVYYCQNNYNYPLTFGAGTK 109
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 75 SDDFILTLSSQMGENLTCLYCYHLPIFICRATKDQS----PKCTQLWFAWGTSDLKRATI 130
S +F+ ++ S+M ENL L L RA DQS P +L A T+ LK
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL--ALDTNQLKSVPD 388
Query: 131 GIFIYGLHRHPQLWNNPNQFD 151
GIF L ++W + N +D
Sbjct: 389 GIFDR-LTSLQKIWLHTNPWD 408
>pdb|1BBD|L Chain L, Three Dimensional Structure Of The Fab Fragment Of A
Neutralizing Antibody To Human Rhinovirus Serotype 2
pdb|1A3R|L Chain L, Fab Fragment (Antibody 8f5) Complexed With Peptide From
Human Rhinovirus (Serotype 2) Viral Capsid Protein Vp2
(Residues 156-170)
Length = 220
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF L++S E+L YC Y+ P+ TK
Sbjct: 72 GSGTDFTLSISGVQAEDLAVYYCQNNYNYPLTFGAGTK 109
>pdb|3O2D|L Chain L, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In
Complex With A Potent Antiviral Antibody
Length = 219
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC 95
GS DF LT+SS E++ YC
Sbjct: 72 GSGTDFTLTISSVQAEDVAVYYC 94
>pdb|1KCU|L Chain L, Crystal Structure Of Antibody Pc287
pdb|1KC5|L Chain L, Crystal Structure Of Antibody Pc287 In Complex With Ps1
Peptide
Length = 214
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS+ DF LT+SS E+L +C Y P+ TK
Sbjct: 66 GSATDFTLTISSVQAEDLADYHCGQSYSYPLTFGGGTK 103
>pdb|3VU1|A Chain A, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From
Pyrococcus Horikoshii
pdb|3VU1|B Chain B, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From
Pyrococcus Horikoshii
Length = 506
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 8 YLVFKSKYLRYLPTYKWTSQELLNSKFGLPTEAYHGFA 45
Y+V+ + L L YK + + FG+PT +Y FA
Sbjct: 192 YVVYLTPSLGVLAYYKVATSNFVKLAFGIPTSSYSEFA 229
>pdb|4EGY|A Chain A, Crystal Structure Of Arar(dbd) In Complex With Operator
Ora1
pdb|4EGY|B Chain B, Crystal Structure Of Arar(dbd) In Complex With Operator
Ora1
pdb|4EGZ|A Chain A, Crystal Structure Of Arar(dbd) In Complex With Operator
Orr3
pdb|4EGZ|B Chain B, Crystal Structure Of Arar(dbd) In Complex With Operator
Orr3
pdb|4H0E|A Chain A, Crystal Structure Of Mutant Orr3 In Complex With Ntd Of
Arar
pdb|4H0E|B Chain B, Crystal Structure Of Mutant Orr3 In Complex With Ntd Of
Arar
Length = 88
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 176 RGCIGSKYAM---LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSL 224
+G +GS++ + Q+K IS+ + + KILP K + ++ +FG++ ++
Sbjct: 13 QGPLGSEFMLPKYAQVKEEISSWINQGKILPDQKIPTENELMQQFGVSRHTI 64
>pdb|1EK3|A Chain A, Kappa-4 Immunoglobulin Vl, Rec
pdb|1EK3|B Chain B, Kappa-4 Immunoglobulin Vl, Rec
Length = 114
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 73 GSSDDFILTLSSQMGENLTCLYC---YHLPIFICRATK 107
GS DF LT+SS E++ YC Y P TK
Sbjct: 72 GSGTDFTLTISSLQAEDVAVYYCQQYYSTPPTFGGGTK 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,514,762
Number of Sequences: 62578
Number of extensions: 307821
Number of successful extensions: 1237
Number of sequences better than 100.0: 258
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 262
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)