RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16721
(234 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 98.5 bits (246), Expect = 8e-24
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K + + +Y LHR P+++ NP +FDP+RFL R ++PF GPR C+G + A
Sbjct: 358 KGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLAR 417
Query: 186 LQMKTTISTILRRYKILP 203
++MK ++T+L+ +++
Sbjct: 418 MEMKLFLATLLQNFEVEL 435
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 77.9 bits (192), Expect = 1e-16
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 128 ATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQ 187
+ + I +R P+++ +P++FDP+RF + ++PF GP C+G+ A L+
Sbjct: 318 TVVLLSIGAANRDPEVFPDPDEFDPERF---------NNAHLPFGGGPHRCLGAALARLE 368
Query: 188 MKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+K ++ +LRR+ +L + T+ G + + R
Sbjct: 369 LKVALAELLRRFPLLLLA-----EPPPLVRRPTLVPRGGERLPVRRR 410
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 69.8 bits (171), Expect = 7e-14
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K A I I Y L R+ + + NP QFDP RFL S N + ++PFS+GPR C+G ++A
Sbjct: 381 KDAQILINYYSLGRNEKYFENPEQFDPSRFLNPDS---NDA-FMPFSIGPRNCVGQQFAQ 436
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMR 222
++ S I+ +K+ D K + E+G+T++
Sbjct: 437 DELYLAFSNIILNFKLKSIDGKKIDETE--EYGLTLK 471
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 66.7 bits (163), Expect = 7e-13
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 19/106 (17%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRF-----LPSQSS--HRNPSGYVPFSLGPRGCIGSK 182
I I +Y +HR P++W +F P+RF +P++++ R Y+PFS GPR C+G +
Sbjct: 378 IMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFR----YIPFSGGPRKCVGDQ 433
Query: 183 YAMLQMKTTISTILRRYKI--LPGDKCKSLQDIRFEFGMTMRSLPG 226
+A+L+ ++ +L+R + +P QDI G T+ + G
Sbjct: 434 FALLEAIVALAVLLQRLDLELVPD------QDIVMTTGATIHTTNG 473
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 55.6 bits (134), Expect = 4e-09
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 126 KRATIGIFIYGLHRHPQLWN-NPNQFDPDRFLPSQSSHRNPSG--YVPFSLGPRGCIGSK 182
K +I I + +H +LW + N+F+PDRF + G ++PF+ GPR CIG
Sbjct: 411 KGLSIWIPVLAIHHSEELWGKDANEFNPDRF----AGRPFAPGRHFIPFAAGPRNCIGQA 466
Query: 183 YAMLQMKTTISTILRRYKI 201
+AM++ K ++ ++ ++
Sbjct: 467 FAMMEAKIILAMLISKFSF 485
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 55.7 bits (134), Expect = 5e-09
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG----YVPFSLGPRGCIGSKYAM 185
I I ++ LHR P+ W++ +F+P+R+ P + N + Y+PF GPR C+G +A
Sbjct: 490 IFISVWNLHRSPKHWDDAEKFNPERW-PLDGPNPNETNQNFSYLPFGGGPRKCVGDMFAS 548
Query: 186 LQMKTTISTILRR--YKILPG 204
+ + ++RR +++ PG
Sbjct: 549 FENVVATAMLVRRFDFQLAPG 569
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 50.8 bits (121), Expect = 2e-07
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 128 ATIGIFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRN-PS-GYVPFSLGPRGCIGSKYA 184
+ I I IY L R +W + F P+R++ R+ PS ++ F+ GPR C+G A
Sbjct: 394 SKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLA 453
Query: 185 MLQMKTTISTILRRY--KILPGDKCKSLQDI--RFEFGM 219
+LQMK I++ Y K++ G K +++ I R + G+
Sbjct: 454 LLQMKIVALEIIKNYDFKVIEGHKIEAIPSILLRMKHGL 492
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 50.1 bits (120), Expect = 3e-07
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 137 LHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG---YVPFSLGPRGCIGSKYAMLQMKTTIS 193
L +P+LW NP +F P+RFL ++ ++PF +G R C G A+ + +
Sbjct: 401 LANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLG 460
Query: 194 TILRRYKILP 203
+++ +++LP
Sbjct: 461 RLVQNFELLP 470
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 48.3 bits (115), Expect = 1e-06
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG----YVPFSLGPRGCIGS 181
K + + I+ + R P +W NP +F P+RFL +++ +P G +PF G R C G+
Sbjct: 386 KNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGT 445
Query: 182 KYAMLQMKTTISTILRRY 199
+ ++ ++ + T++ +
Sbjct: 446 RMGIVLVEYILGTLVHSF 463
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 46.3 bits (110), Expect = 6e-06
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 130 IGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMK 189
I I IYG + + W NP ++DP+RFL + + + F G R C GS AML
Sbjct: 362 IAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIAC 421
Query: 190 TTISTILRR--YKILPGD 205
I+ +++ +++ GD
Sbjct: 422 MAIARLVQEFEWRLREGD 439
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 46.0 bits (109), Expect = 7e-06
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSS-----HRNPSGYVPFSLGPRGCIG 180
K AT+ + ++ + R P+ W +P +F PDRFLP + +PF G R C G
Sbjct: 394 KGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAG 453
Query: 181 SKYAMLQMKTTISTILRRYKI-LPGDKCKSLQDIRFEFGMTM-RSLP 225
+ + + +T++ + L + ++ +G+T+ R++P
Sbjct: 454 LSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVP 500
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 44.4 bits (105), Expect = 2e-05
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQS-----SHRNPSGYVPFSLGPRGCIG 180
+ + I +GL R+ ++W++ +F P+R P++ SH +PFS G R C G
Sbjct: 393 AKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPG 452
Query: 181 SKYAMLQMKTTISTILRRYKILPGDKCKSLQ-DIRFEFGMTM 221
+ + + ++ + + P D + D + +GMTM
Sbjct: 453 APLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTM 494
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 44.3 bits (105), Expect = 3e-05
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 135 YGLHRHPQLWNNPN--QFDPDR------FLPSQSSHRNPSGYVPFSLGPRGCIGSKYAML 186
Y + R ++W P+ +F P+R F+P NP Y F G R C+G + A++
Sbjct: 400 YAMGRMERIWG-PDCLEFKPERWLKNGVFVPE-----NPFKYPVFQAGLRVCLGKEMALM 453
Query: 187 QMKTTISTILRRYKILPGDKCKSLQDIRFEFGMT 220
+MK+ ++RR+ I + RF G+T
Sbjct: 454 EMKSVAVAVVRRFDIEVVGRSNRAP--RFAPGLT 485
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 43.3 bits (102), Expect = 5e-05
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 134 IYGLHRHPQLWNNPNQFDPDRFL-------PSQSSHRNPSGYVPFSLGPRGCIGSKYAML 186
I +H L++ P F+P R+ S SS + ++PF GPR C GS+ A L
Sbjct: 388 IAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKL 447
Query: 187 QMKTTI 192
+M I
Sbjct: 448 EMAVFI 453
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 43.1 bits (101), Expect = 6e-05
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 24/101 (23%)
Query: 135 YGLHRHPQLWNNPNQFDPDRFLPSQSS---HRNPSGYVPFSLGPRGCIGSKYAMLQMKTT 191
YGL R+P++W++P F P+R L S N ++ FS G RGC A + T
Sbjct: 433 YGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGC-----AAPALGTA 487
Query: 192 ISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIE 232
I+T++ ++L G K K L G++ R+E
Sbjct: 488 ITTMMLA-RLLQGFKWK---------------LAGSETRVE 512
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 42.7 bits (100), Expect = 1e-04
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 136 GLHRHPQLWNNPNQFDPDRFLPSQSSHRNPS------GYVPFSLGPRGCIGSKYAMLQMK 189
GL R+P++W +P ++P+R L + + +V FS G RGC+G K + M
Sbjct: 421 GLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMV 480
Query: 190 TTISTILRRY 199
++ L+ +
Sbjct: 481 MMLARFLQGF 490
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 40.9 bits (96), Expect = 3e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 135 YGLHRHPQLWN-NPNQFDPDRFLPSQS-SHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTI 192
Y + R W + F P+R++ + +P + F GPR C+G A LQMK +
Sbjct: 418 YSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMAL 477
Query: 193 STILRRYK--ILPG 204
+ + R +K ++PG
Sbjct: 478 ALLCRFFKFQLVPG 491
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 40.7 bits (95), Expect = 4e-04
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 137 LHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTIL 196
+H ++++P +FDP RF + P+ ++PF G C G++ A L++ I +
Sbjct: 374 IHHSADIFSDPGKFDPSRFEVAP----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLT 429
Query: 197 RRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRI 231
+Y+ S+ +LP N + I
Sbjct: 430 TKYRW-------SIVGTSNGIQYGPFALPQNGLPI 457
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 40.5 bits (95), Expect = 5e-04
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 137 LHRHPQLWNNPNQFDPDR---FLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTIS 193
+H P+++ NP +FDP R + P ++PF LG R C G+ A L++ +
Sbjct: 398 VHMDPEVYPNPKEFDPSRWDNYTPK------AGTFLPFGLGSRLCPGNDLAKLEISIFLH 451
Query: 194 TILRRYKILP 203
L Y++
Sbjct: 452 HFLLGYRLER 461
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 39.2 bits (91), Expect = 0.001
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHR-NPSG-----YVPFSLGPRGCI 179
K AT+ + + R + W P +F P+RFL + +G +PF +G R C
Sbjct: 404 KGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICA 463
Query: 180 GSKYAMLQMKTTISTILRRY--KILPGD 205
G AML ++ ++ ++R + K +PGD
Sbjct: 464 GLGIAMLHLEYFVANMVREFEWKEVPGD 491
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 37.5 bits (87), Expect = 0.004
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG--YVPFSLGPRGCIGSKY 183
KR+ + I + + R W +P+ F P RFL S ++PF G R C G +
Sbjct: 400 KRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQL 459
Query: 184 AMLQMKTTISTILRRYKI-LPGDKCKSLQDIRFEFGMT 220
+ + ++ +L + LP S D+ FG+T
Sbjct: 460 GLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLT 497
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 34.7 bits (79), Expect = 0.035
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 129 TIGIFIYGLHRHPQLWN-NPNQFDPDRFLPSQSSHRNPS-GYVPFSLGPRGCIGSKYAML 186
T+ + + + R + W NP++F P+RFL + + ++PF G R C G +
Sbjct: 391 TVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAA 450
Query: 187 QMKTTISTILRRY 199
++ + +L +
Sbjct: 451 MLEVPYANLLLNF 463
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 31.5 bits (71), Expect = 0.42
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 136 GLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG-YVPFSLGPRGCIGSKYAMLQMKTTIST 194
+H + + + F+P R+ S S PS + PF GPR C G + A + + +
Sbjct: 376 AVHLDHEYFKDARTFNPWRW-QSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHR 434
Query: 195 ILRRYKILPGDKCK 208
++ R+ +P ++ K
Sbjct: 435 LVTRFSWVPAEQDK 448
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 29.3 bits (66), Expect = 1.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 137 LHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQ 187
+H + ++NP QF+P R+ Q N S + PF G R C G A L+
Sbjct: 362 VHLDEENYDNPYQFNPWRW---QEKDMNNSSFTPFGGGQRLCPGLDLARLE 409
>gnl|CDD|182589 PRK10614, PRK10614, multidrug efflux system subunit MdtC;
Provisional.
Length = 1025
Score = 29.3 bits (66), Expect = 2.0
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 43 GFAVLSMSVQCVGLLLNKSLNAPTNGPVFRGSSDDFILTLSSQMGEN------LTCLYCY 96
GF VLSMS+ V + L L G +FR +F +TLS +G + LT + C
Sbjct: 432 GFTVLSMSLSLVAVFLPLLLMGGLPGRLFR----EFAVTLSVAIGISLLVSLTLTPMMCA 487
Query: 97 HL 98
L
Sbjct: 488 WL 489
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related
proteins; solute-binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. NIS is expressed in the thyroid,
colon, ovary, and in human breast cancers. It mediates
the active transport and the concentration of iodide
from the blood into thyroid follicular cells, a
fundamental step in thyroid hormone biosynthesis, and
is the basis of radioiodine therapy for thyroid cancer.
Mutation in the SLC5A5 gene can result in a form of
thyroid hormone dysgenesis. Human NIS exists mainly as
a dimer stabilized by a disulfide bridge. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 535
Score = 29.0 bits (65), Expect = 2.2
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 35 GLPTEAY-HGFAVLSMSVQCVGLLLNKSLNAPTNGPVF 71
G+P EAY +G L M C+G LLN L A PVF
Sbjct: 61 GVPAEAYRYGLKFLWM---CLGQLLNSLLTAYLFMPVF 95
>gnl|CDD|222682 pfam14326, DUF4384, Domain of unknown function (DUF4384). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and archaea, and is
approximately 80 amino acids in length.
Length = 83
Score = 26.4 bits (59), Expect = 5.0
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 147 PNQFDPDRFLPSQSSHRNPSGYVPFSL---GPRG 177
PN++ D F+ + ++ P F L P G
Sbjct: 37 PNRYSKDNFVKAGKTYTFPDPGDGFRLTVAPPPG 70
>gnl|CDD|238417 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (GTP) for the
phosphoryl transfer, and has a strict requirement for
divalent metal ions for activity. PEPCK's separate into
two phylogenetic groups based on their nucleotide
substrate specificity, this model describes the
GTP-dependent group.
Length = 579
Score = 28.0 bits (63), Expect = 5.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 169 VPFSLGPRGCIGSKYA 184
+PFS+GP G SK
Sbjct: 108 IPFSMGPLGSPISKIG 123
>gnl|CDD|213827 TIGR03554, F420_G6P_DH, glucose-6-phosphate dehydrogenase
(coenzyme-F420). This family consists of the
F420-dependent glucose-6-phosphate dehydrogenase of
Mycobacterium and Nocardia. It shows homology to several
other F420-dependent enzymes rather than to the NAD or
NADP-dependent glucose-6-phosphate dehydrogenases
[Energy metabolism, Pentose phosphate pathway].
Length = 331
Score = 27.6 bits (61), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 153 DRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
D F P R+ G+ PFSL +G + L + T++ T RY
Sbjct: 37 DHFQP----WRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRY 79
>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase. The four
sequences which make up the seed for this model are not
closely related, although they are all members of the
pfam00155 family of aminotransferases and are more
closely related to each other than to anything else.
Additionally, all of them are found in the vicinity of
genes involved in the biosynthesis of lysine via the
diaminopimelate pathway (GenProp0125), although this
amount to a separation of 12 genes in the case of
Sulfurihydrogenibium azorense Az-Fu1. None of these
genomes contain another strong candidate for this role
in the pathway. Note: the detailed information included
in the EC:2.6.1.17 record includes the assertions that
the enzyme uses the pyridoxal pyrophosphate cofactor,
which is consistent with the pfam00155 family, and the
assertion that the amino group donor is L-glutamate,
which is undetermined for the sequences in this clade.
Length = 350
Score = 27.2 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 99 PIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIF 133
P FI +A D P+ +Q A GT L+ A G F
Sbjct: 15 PPFIRKALIDAVPEVSQYPSALGTKALREAISGWF 49
>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase. catalyzes the
formation of phosphoenolpyruvate by decarboxylation of
oxaloacetate.
Length = 586
Score = 27.1 bits (61), Expect = 8.7
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 169 VPFSLGPRGC----IG-----SKYAMLQMKT 190
+PFS+GP G IG S Y + M+
Sbjct: 108 IPFSMGPVGSPFSKIGVQLTDSPYVVHSMRI 138
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 27.0 bits (59), Expect = 9.6
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 127 RATIGIFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPS------GYVPFSLGPRGCI 179
+ I + + + R W +NPN+F P+RF+ H+ +PF G R C
Sbjct: 386 KTIIQVNAWAVSRDTAAWGDNPNEFIPERFM---KEHKGVDFKGQDFELLPFGSGRRMCP 442
Query: 180 GSKYAMLQMKTTISTILRRY 199
+ ++ + +L ++
Sbjct: 443 AMHLGIAMVEIPFANLLYKF 462
>gnl|CDD|185766 cd09243, BRO1_Brox_like, Protein-interacting Bro1-like domain of
human Brox1 and related proteins. This family contains
the Bro1-like domain of a single-domain protein, human
Brox, and related domains. It belongs to the
BRO1_Alix_like superfamily which also includes the
Bro1-like domains of mammalian Alix (apoptosis-linked
gene-2 interacting protein X), His-Domain type N23
protein tyrosine phosphatase (HD-PTP, also known as
PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1
and Rim20 (also known as PalA) from Saccharomyces
cerevisiae, Ustilago maydis Rim23 (also known as PalC),
and related domains. Alix, HD-PTP, Brox, Bro1, Rim20,
and Rim23, interact with the ESCRT (Endosomal Sorting
Complexes Required for Transport) system. Bro1-like
domains are boomerang-shaped, and part of the domain is
a tetratricopeptide repeat (TPR)-like structure.
Bro1-like domains bind components of the ESCRT-III
complex: CHMP4 in the case of Brox. Human Brox can bind
to human immunodeficiency virus type 1 (HIV-1)
nucleocapsid. In addition to a Bro1-like domain, Brox
also has a C-terminal thioester-linkage site for
isoprenoid lipids (CaaX motif). This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 353
Score = 26.9 bits (60), Expect = 9.8
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 18/73 (24%)
Query: 1 METYYLEYL-------------VFKSKYLRYLPTYKWTSQELLNSKFGLPTEAYHGFAVL 47
++T + YL +SK LRYL +KWT L N + F +
Sbjct: 54 VKTAFNAYLSLLQGFILALDGKTQESK-LRYLINFKWTDSLLGNE---PSVQQDAIFELA 109
Query: 48 SMSVQCVGLLLNK 60
SM V L K
Sbjct: 110 SML-FNVALWYTK 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.445
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,776,431
Number of extensions: 1040386
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 36
Length of query: 234
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 140
Effective length of database: 6,768,326
Effective search space: 947565640
Effective search space used: 947565640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)