RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16721
(234 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 130 bits (329), Expect = 9e-36
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
+ Y + R + +P F+PDRF P + Y PFSLG R CIG ++A
Sbjct: 339 GNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGAP--KPRFTYFPFSLGHRSCIGQQFAQ 396
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+++K ++ +L+R + Q + T++ L + PR
Sbjct: 397 MEVKVVMAKLLQRLEFRLVPG----QRFGLQEQATLKPLDPVLCTLRPR 441
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 125 bits (317), Expect = 6e-34
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
A I Y + R P+ +++ +FDPDR+LP ++++ PFS G R C ++M
Sbjct: 358 AGADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSDHFSM 417
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
Q+ + + +Y+ + G+T+R +R R
Sbjct: 418 AQLTLITAALATKYRFEQVAG----SNDAVRVGITLRPHDLL-VRPVAR 461
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 123 bits (311), Expect = 5e-33
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K I + I +HR + + PN+F + F + + PF GPRGC G AM
Sbjct: 390 KGTNIILNIGRMHR-LEFFPKPNEFTLENFAKN----VPYRYFQPFGFGPRGCAGKYIAM 444
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMR---SLPGNDIRIEPR 234
+ MK + T+LRR+ + ++ I+ +++ + ++ PR
Sbjct: 445 VMMKAILVTLLRRFHVKTLQGQC-VESIQKIHDLSLHPDETKNMLEMIFTPR 495
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 118 bits (297), Expect = 4e-31
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
+ + R W F+PDR+L + YVPF G CIG +A
Sbjct: 349 PGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAY 408
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+Q+KT ST+LR Y+ D + + + IR + R
Sbjct: 409 VQIKTIWSTMLRLYEFDLIDG----YFPTVNYTTMIHTPENPVIRYKRR 453
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 113 bits (284), Expect = 2e-29
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSH-RNPSGYVPFSLGPRGCIGSKYA 184
+ + +R P+ + +P+ F P R+ + N ++PF G C+G+ +A
Sbjct: 341 EGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFA 400
Query: 185 MLQMKTTISTILRRYKI-LPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
++Q+K S +LR Y+ + D M ++ +R R
Sbjct: 401 IMQIKAIFSVLLREYEFEMAQPPESYRNDHS---KMVVQLAQPAAVRYRRR 448
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 110 bits (277), Expect = 9e-29
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
T+ + Y R + + F P+RFL + + Y PF LG R C+G +A+
Sbjct: 288 PGTTLVLSPYVTQRLH--FPDGEAFRPERFLEERGTPSG--RYFPFGLGQRLCLGRDFAL 343
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
L+ + RR+++ P R +T+R P + PR
Sbjct: 344 LEGPIVLRAFFRRFRLDPLP------FPRVLAQVTLR--PEGGLPARPR 384
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 110 bits (278), Expect = 2e-28
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K I H + + P ++DP+R + ++ F G CIG K+ +
Sbjct: 349 KGDIIACSPLLSHHDEEAFPEPRRWDPERDE------KVEGAFIGFGAGVHKCIGQKFGL 402
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
LQ+KT ++T R Y + D + + + ++ R
Sbjct: 403 LQVKTILATAFRSYDFQLLR--DEVPDPDYHTMVVGPTASQCRVKYIRR 449
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 110 bits (276), Expect = 4e-28
Identities = 20/110 (18%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 126 KRATIGIFIYGLHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYA 184
K + + I LHR +W ++ +F P+RF + + PF G R CIG ++A
Sbjct: 349 KGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSA--IPQHAFKPFGNGQRACIGQQFA 406
Query: 185 MLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+ + + +L+ + ++ + +T++ ++ + +
Sbjct: 407 LHEATLVLGMMLKHFDFEDHTN----YELDIKETLTLKPEGFV-VKAKSK 451
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 108 bits (272), Expect = 2e-27
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 129 TIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQM 188
+ I Y LHR P+ W P +F P+RF + +P Y PF GPR CIG ++A++ M
Sbjct: 371 VVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNM 430
Query: 189 KTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
K + +L+ + P + + ++ G ++ +++E R
Sbjct: 431 KLALIRVLQNFSFKPCKETQ--IPLKLSLGGLLQPEKPVVLKVESR 474
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 105 bits (262), Expect = 3e-26
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPF-------SLGPRGC 178
+ + R P++++ ++F P+RF+ + ++G + C
Sbjct: 385 AGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQC 444
Query: 179 IGSKYAMLQMKTTISTILRRYKILPGDK 206
G + +L + + I RRY +
Sbjct: 445 AGKDFVVLVARLFVIEIFRRYDSFDIEV 472
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 103 bits (260), Expect = 5e-26
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K + + L + + ++F P+R+L + NP ++PF +G R CIG + A
Sbjct: 379 KGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEKK-INPFAHLPFGIGKRMCIGRRLAE 437
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
LQ+ + I+++Y I+ D + + + I PR
Sbjct: 438 LQLHLALCWIIQKYDIVATDN----EPVEMLHLGILVPSRELPIAFRPR 482
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 101 bits (255), Expect = 2e-25
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSG-YVPFSLGPRGCIGSKYA 184
K + I H P L+ +P +FDP+RF P S+ NP +VPF G R C+G ++A
Sbjct: 338 KGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEFA 397
Query: 185 MLQMKTTISTILRRYK--ILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEP 233
L+MK + +++++ +LPG Q++ + R +++
Sbjct: 398 RLEMKLFATRLIQQFDWTLLPG------QNLELVVTPSPRPKDNLRVKLHS 442
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 101 bits (252), Expect = 5e-25
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 16/113 (14%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGP---------R 176
K + + + P++++ P ++ PDRF+ YV +S GP +
Sbjct: 368 KGEMLFGYQPFATKDPKVFDRPEEYVPDRFVGDG---EALLKYVWWSNGPETESPTVENK 424
Query: 177 GCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDI 229
C G + +L + + + RRY + + +T+ L I
Sbjct: 425 QCAGKDFVVLITRLFVIELFRRYDSFEIEL----GESPLGAAVTLTFLKRASI 473
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 100 bits (252), Expect = 8e-25
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
+ + + IY L R P + +P FDP R+L + + F G R C+G + A
Sbjct: 371 AKTLVQVAIYALGREPTFFFDPENFDPTRWLSKDKN-ITYFRNLGFGWGVRQCLGRRIAE 429
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
L+M + +L +++ + + L D+ F + + P I
Sbjct: 430 LEMTIFLINMLENFRV----EIQHLSDVGTTFNLILM--PEKPISFTFW 472
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 95.9 bits (239), Expect = 4e-23
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 13/120 (10%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHR---------NPSGYVPFSLGPR 176
K I ++ +H P+++ +P F DR+L + Y+PF G
Sbjct: 366 KDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGAT 425
Query: 177 GCIGSKYAMLQMKTTISTILRRY--KILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
C G +A+ ++K + +L + +++ G D + P NDI + +
Sbjct: 426 ICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILP--PLNDIEFKYK 483
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 95.2 bits (237), Expect = 8e-23
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 134 IYGLHRHPQLWNNPNQFDPDRFLPSQSSH---------RNPSGYVPFSLGPRGCIGSKYA 184
R P+++ +P F +RFL S R + +P+ G C+G YA
Sbjct: 378 FLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRSYA 437
Query: 185 MLQMKTTISTILRRY--KILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+ +K + +L +++ D D+ M+ +R R
Sbjct: 438 VNSIKQFVFLVLVHLDLELINADVEIPEFDLSRYGFGLMQPEHDVPVRYRIR 489
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 87.4 bits (217), Expect = 3e-20
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGP----RGCIGS 181
+ + + +YG + W +P +F P+RF + ++P G C G
Sbjct: 308 EGRQVVLDLYGSNHDAATWADPQEFRPERFRAWD---EDSFNFIPQGGGDHYLGHRCPGE 364
Query: 182 KYAMLQMKTTISTILRRYKI-LPGDKCKSLQDIRFEFGMTMRSLPGNDIRI 231
+ MK ++ + +P QD+ +F + +LP + +
Sbjct: 365 WIVLAIMKVAAHLLVNAMRYDVPD------QDLSIDFAR-LPALPKSGFVM 408
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 86.7 bits (215), Expect = 6e-20
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGP----RGCIGS 181
K ++ + +YG + P+LW++P++F P+RF + N +P G C G
Sbjct: 310 KGTSVLLDLYGTNHDPRLWDHPDEFRPERFAERE---ENLFDMIPQGGGHAEKGHRCPGE 366
Query: 182 KYAMLQMKTTISTILRRYKI-LPGDKCKSLQDIRFEFG-MTMRSLPGNDIRIEPR 234
+ MK ++ ++ + + +P Q + + M G + R
Sbjct: 367 GITIEVMKASLDFLVHQIEYDVPE------QSLHYSLARMPSLPESGFVMSGIRR 415
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 78.1 bits (193), Expect = 6e-17
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 137 LHRHPQLWNNPNQFDPDRFLPS---------QSSHRNPSGYVPFSLGPRGCIGSKYAMLQ 187
PQ+ P F DRFL + ++ R VP+ C G +A+
Sbjct: 362 PQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCPGRHFAVHA 421
Query: 188 MKTTISTILRRYKI-LPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+K + TIL R+ + L +G + P D+ I R
Sbjct: 422 IKELVFTILTRFDVELCDKNATVPLVDPSRYGFGI-LQPAGDLEIRYR 468
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 73.0 bits (180), Expect = 4e-15
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K T+ + + + +W P +F P+ FL +Q P ++PFS G R C+G A
Sbjct: 369 KGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLAR 428
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+++ +++L+ + F + P + PR
Sbjct: 429 MELFLFFTSLLQHFSFSVPTGQPRP-SHHGVFAFLVSPSPYE-LCAVPR 475
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 72.2 bits (178), Expect = 6e-15
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K T+ +Y +H + W +P F P+RFL S VPFSLG R C+G A
Sbjct: 370 KGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLAR 429
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
++M + +L+R+ + + D++ GMT++ P I E R
Sbjct: 430 MEMFLFFTALLQRFHLHFPHELVP--DLKPRLGMTLQPQPYL-ICAERR 475
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 70.3 bits (173), Expect = 3e-14
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
+ + + G H +W P++F PDRFL ++ + F G R C+G A
Sbjct: 379 EGMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPGANPS----ALAFGCGARVCLGESLAR 434
Query: 186 LQMKTTISTILRRY--KILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
L++ ++ +L+ + P SL G+ ++ P +R++PR
Sbjct: 435 LELFVVLARLLQAFTLLPPPVGALPSL-QPDPYCGVNLKVQPFQ-VRLQPR 483
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 68.8 bits (169), Expect = 9e-14
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHR--NPSGYVPFSLGPRGCIGSKY 183
K + + + ++ P W NP FDP RFL S + FS+G R CIG +
Sbjct: 376 KDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEEL 435
Query: 184 AMLQMKTTISTILRRY--KILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+ +Q+ IS + + + P + + F +G+T++ + + R
Sbjct: 436 SKMQLFLFISILAHQCDFRANPNEP----AKMNFSYGLTIKPKSFK-VNVTLR 483
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 68.3 bits (168), Expect = 1e-13
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K + + + Q + +P +F P+ FL + + PFS G R C G A
Sbjct: 364 KGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGLAR 423
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+++ + IL+ + + P K + G + + PR
Sbjct: 424 MELFLLLCAILQHFNLKPLVDPKDIDLSPIHIGFGCIPPRYK-LCVIPR 471
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 67.6 bits (166), Expect = 2e-13
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K + + P+ + PN F+P FL + + + G++PFSLG R C+G A
Sbjct: 365 KNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIAR 424
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
++ +TIL+ + I + + E G+ IR R
Sbjct: 425 TELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQ-IRFLAR 472
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 66.8 bits (164), Expect = 4e-13
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K TI I + + + + NP FDP FL + + ++PFS G R C+G A
Sbjct: 366 KGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAG 425
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+++ +++IL+ + + K+L G + P
Sbjct: 426 MELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQ-LCFIPI 473
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 66.4 bits (163), Expect = 6e-13
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRN---PSGYVPFSLGPRGCIGSK 182
K+ + + + ++ P+LW +P++F P+RFL + + N + F +G R CIG
Sbjct: 379 KKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEV 438
Query: 183 YAMLQMKTTISTILRRY--KILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
A ++ ++ +L++ + PG K D+ +G+TM+ R
Sbjct: 439 LAKWEIFLFLAILLQQLEFSVPPGVK----VDLTPIYGLTMKHARCE-HVQARR 487
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 66.0 bits (162), Expect = 7e-13
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPS--QSSHRNPSGYVPFSLGPRGCIGSKY 183
K + I ++ LH + + W+ P+QF P+RFL Y+PF GPR CIG
Sbjct: 370 KGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEIL 429
Query: 184 AMLQMKTTISTILRRY--KILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
A ++ ++ +L+R+ ++ + L + + ++I+ R
Sbjct: 430 ARQELFLIMAWLLQRFDLEVPDDGQ---LPSLEGIPKVVFLIDSFK-VKIKVR 478
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 65.7 bits (161), Expect = 1e-12
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 134 IYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTIS 193
+ + R P ++NP F+P FL + + +VPFS+G R C G A +++ +
Sbjct: 373 LGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFT 432
Query: 194 TILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
T+++ +++ K + G + PR
Sbjct: 433 TVMQNFRLKSSQSPKDIDVSPKHVGFATIPRNYT-MSFLPR 472
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 43.8 bits (104), Expect = 2e-05
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
+ DPD HR+ ++ F G C+G A L+++ ++ ++ R +P
Sbjct: 327 GTVYEDPDALDI----HRSARHHLAFGFGVHQCLGQNLARLELEVILNALMDR---VPTL 379
Query: 206 K-CKSLQDIRFEFGMTMR---SLP 225
+ ++ + G T++ LP
Sbjct: 380 RLAVPVEQLVLRPGTTIQGVNELP 403
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 43.4 bits (103), Expect = 3e-05
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
QF D DR R P+ ++ F G C+G+ A ++++ + +L+R LPG
Sbjct: 338 QAQFPDADRIDV----DRTPNQHLGFGHGVHHCLGAPLARVELQVALEVLLQR---LPGI 390
Query: 206 K-CKSLQDIRFEFGMTMRSL 224
+ +R+ GM +R
Sbjct: 391 RLGIPETQLRWSEGMLLRGP 410
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 43.4 bits (103), Expect = 3e-05
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
+ +PD F RN +V F G C+G A +++ + + R +PG
Sbjct: 325 AKAYENPDIFDA----RRNARHHVGFGHGIHQCLGQNLARAELEIALGGLFAR---IPGL 377
Query: 206 K-CKSLQDIRFEFGMTMR---SLP 225
+ L ++ + G + LP
Sbjct: 378 RLAVPLDEVPIKAGHDAQGPIELP 401
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 43.0 bits (102), Expect = 4e-05
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 22/95 (23%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P PDRF P R ++ F G C+G+ A L+ + + R P
Sbjct: 338 PTIVGAPDRFDP----DRAQIRHLGFGKGAHFCLGAPLARLEATVALPALAAR---FPE- 389
Query: 206 KCKSLQ---DIRFEFGMTMR---SLPGNDIRIEPR 234
+ + ++ +T+R +L I +
Sbjct: 390 ----ARLSGEPEYKRNLTLRGMSTLS---IAVHHH 417
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 43.0 bits (102), Expect = 4e-05
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P+ F DPDR R+P+ ++ + G C G+ A +Q + + T+L R LPG
Sbjct: 328 PDVFPDPDRIDL----DRDPNPHLAYGNGHHFCTGAVLARMQTELLVDTLLER---LPG- 379
Query: 206 KCKSL------QDIRFEFGMTMRSL 224
L + + + +R
Sbjct: 380 ----LRLAVPAEQVAWRRKTMIRGP 400
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 42.6 bits (101), Expect = 5e-05
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 19/85 (22%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P F DP R ++ F GP C+G A ++++ T+ RR +P
Sbjct: 328 PAVFKDPAVLDV----ERGARHHLAFGFGPHQCLGQNLARMELQIVFDTLFRR---IPS- 379
Query: 206 KCKSL------QDIRFEFGMTMRSL 224
L +D+ F+ + +
Sbjct: 380 ----LRLAVPMEDVPFKGDSVIYGV 400
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 42.6 bits (101), Expect = 5e-05
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P +P+RF R P+ ++ F G CIG + A ++++ T+ RR LPG
Sbjct: 320 PAFVEEPERFDI----TRRPAPHLAFGFGAHQCIGQQLARIELQIVFETLFRR---LPGL 372
Query: 206 K-CKSLQDIRFEFGMTMRSL 224
+ K ++++RF M +
Sbjct: 373 RLAKPVEELRFRHDMVFYGV 392
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 42.6 bits (101), Expect = 5e-05
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
P+ F +PD F R+P+ ++ F G C+GS A L+ + I+T+L+R
Sbjct: 316 PSIFTNPDVFDI----TRSPNPHLSFGHGHHVCLGSSLARLEAQIAINTLLQRM 365
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 42.6 bits (101), Expect = 5e-05
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P F DPDR R+P+ +V F GP C G A L+ + + +L R +PG
Sbjct: 325 PEVFPDPDRIDF----ERSPNPHVSFGFGPHYCPGGMLARLESELLVDAVLDR---VPG- 376
Query: 206 KCKSL------QDIRFEFGMTMRSL 224
L +D+ F+ G +R
Sbjct: 377 ----LKLAVAPEDVPFKKGALIRGP 397
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 42.2 bits (100), Expect = 7e-05
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P QF DP+R HR + +V F G C+G A L+++ + T+LRR +P
Sbjct: 332 PEQFDDPERVDF----HRTDNHHVAFGYGVHQCVGQHLARLELEVALETLLRR---VPTL 384
Query: 206 K-CKSLQDIRFEFGMTMR---SLP 225
+ + + L
Sbjct: 385 RLAGERDQVVVKHDSATFGLEELM 408
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 42.2 bits (100), Expect = 7e-05
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 18/87 (20%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKIL--- 202
+ +PDR R+ SG V F G C+G++ A L+ + I + L
Sbjct: 319 ADWMPEPDRLDI----TRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALA 374
Query: 203 -PGDKCKSLQDIRFEFGMTMR---SLP 225
D ++ + +R +P
Sbjct: 375 VGLD------ELVYRESTLVRGLSRMP 395
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 42.3 bits (100), Expect = 7e-05
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 22/89 (24%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P D DR R P +V F G C+G+ A L+++T + + RR P
Sbjct: 319 PALAPDVDRLDV----TREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRR---FPA- 370
Query: 206 KCKSL------QDIRFEFGMTMR---SLP 225
L QD F L
Sbjct: 371 ----LRLADPAQDTEFRLTTPAYGLTELM 395
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 42.2 bits (100), Expect = 7e-05
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
P ++ DPDR+ R SG+V F G C+G A L+ + ++ + R+
Sbjct: 333 PRRWDDPDRYDI----TRKTSGHVGFGSGVHMCVGQLVARLEGEVVLAALARKV 382
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 41.9 bits (99), Expect = 8e-05
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 19/85 (22%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
F P+ F R P+ ++ F G CIG+ A L+++T + + R LP
Sbjct: 325 ERAFTGPEEFDA----ARTPNPHLTFGHGIWHCIGAPLARLELRTMFTKLFTR---LPE- 376
Query: 206 KCKSL------QDIRFEFGMTMRSL 224
L + +R + G
Sbjct: 377 ----LRPELPVEQLRLKEGQLSGGF 397
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 41.8 bits (99), Expect = 9e-05
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 22/89 (24%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P QF DP RF R+ G++ F G C+G A L+ + + + R P
Sbjct: 323 PKQFPDPHRFDV----TRDTRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGR---FPA- 374
Query: 206 KCKSLQ------DIRFEFGMTMR---SLP 225
L D+ + + +R LP
Sbjct: 375 ----LSLGIDADDVVWRRSLLLRGIDHLP 399
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 41.6 bits (98), Expect = 9e-05
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 8/59 (13%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPG 204
P F +PDR R + + + + + LPG
Sbjct: 304 PEVFAEPDRLDV----DRPDADRALSAHRGHPGRLEELVTALATAALRAAAKA---LPG 355
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 41.9 bits (99), Expect = 1e-04
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 22/94 (23%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
F PD F R+ S + + GP C G A L+ + + TI RR P
Sbjct: 337 GTVFSRPDVFDV----RRDTSASLAYGRGPHVCPGVSLARLEAEIAVGTIFRR---FPE- 388
Query: 206 KCKSLQ---DIRFEFGMTMR---SLPGNDIRIEP 233
++ F + R SL + ++P
Sbjct: 389 ----MKLKETPVFGYHPAFRNIESLN---VILKP 415
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 41.9 bits (99), Expect = 1e-04
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 22/96 (22%)
Query: 147 PNQF--DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR---YKI 201
Q+ D R P + FS G C+G+ A +Q + ++ +L R +++
Sbjct: 332 ERQYGPDAAELDV----TRCPRNILTFSHGAHHCLGAAAARMQCRVALTELLARCPDFEV 387
Query: 202 LPGDKCKSLQDIRFEFGMTMR---SLPGNDIRIEPR 234
I + G +R S+P R+
Sbjct: 388 AES-------RIVWSGGSYVRRPLSVP---FRVTSS 413
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 41.5 bits (98), Expect = 1e-04
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
+ F PD + R P+ ++ G C+G+ ++ + I+ L+R
Sbjct: 313 RSAFDSPDNIVI----ERTPNRHLSLGHGIHRCLGAHLIRVEARVAITEFLKRI 362
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 41.5 bits (98), Expect = 1e-04
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 22/89 (24%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P +F DP RF R+ +G++ F G CIG+ A L+ + + +L R P
Sbjct: 346 PERFPDPHRFDI----RRDTAGHLAFGHGIHFCIGAPLARLEARIAVRALLER---CPD- 397
Query: 206 KCKSLQ------DIRFEFGMTMR---SLP 225
L ++ + +R +LP
Sbjct: 398 ----LALDVSPGELVWYPNPMIRGLKALP 422
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 41.1 bits (97), Expect = 2e-04
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 20/87 (22%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P +F DPD HR V F LG C+G+ A + + + +L +P
Sbjct: 336 PARFPDPDVLDV----HRAAERQVGFGLGIHYCLGATLARAEAEIGLRALLDG---IPA- 387
Query: 206 KCKSLQ----DIRFEFGMTMR---SLP 225
L ++ + M L
Sbjct: 388 ----LGRGAHEVEYADDMVFHGPTRLL 410
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
F D ++F+P RNP+ ++ F G C+G+ A L+ + I +R+
Sbjct: 289 EEVFHDGEKFIP----DRNPNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRF 338
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
+ P R + F G C+G A ++ T+ L R +P
Sbjct: 330 ERENACPMHVDF----SRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTR---IPDF 382
Query: 206 KCKSLQDIRFEFGMT--MRSLPGNDIRIEP 233
I+ + G+ +++LP + +P
Sbjct: 383 SIAPGAQIQHKSGIVSGVQALP---LVWDP 409
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 40.4 bits (95), Expect = 3e-04
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
P +F DPD FLP R P+ ++ F G C+GS A +++ + + R
Sbjct: 336 PAEFDDPDTFLP----GRKPNRHITFGHGMHHCLGSALARIELSVVLRVLAERV 385
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 40.3 bits (95), Expect = 3e-04
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
F DPD F+P R P+ ++ F G C+G+ A L+ + + +++
Sbjct: 289 EEVFKDPDSFIP----DRTPNPHLSFGSGIHLCLGAPLARLEARIALEEFAKKF 338
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPG 204
DPD +R V F G C+G+ A ++ T+ RR PG
Sbjct: 328 EALTPDPDVLDA----NRAAVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRR---FPG 379
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 22/89 (24%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P+ D D F R ++ F G C+G+ A +++ + ++ R P
Sbjct: 326 PDWHEDADTFDA----TRTVKEHLAFGHGVHFCLGAPLARMEVTLALESLFGR---FPD- 377
Query: 206 KCKSLQ------DIRFEFGMTMR---SLP 225
L+ ++ + LP
Sbjct: 378 ----LRLADPAEELPPVPSLISNGHQRLP 402
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 40.4 bits (95), Expect = 3e-04
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 21/95 (22%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR---YKIL 202
DP R + F+ GP C G A L++ + L R +++
Sbjct: 337 DRHHDDPMTVDL----SRRDVTHSTFAQGPHRCAGMHLARLEVTVMLQEWLARIPEFRLK 392
Query: 203 PGDKCKSLQDIRFEFGMTMR---SLPGNDIRIEPR 234
+ + ++P + EP+
Sbjct: 393 DR-------AVPIYHSGIVAAVENIP---LEWEPQ 417
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 40.3 bits (95), Expect = 3e-04
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
R +++ NP++F+ +R P + F G CI A ++ T ST+ ++
Sbjct: 321 RDEEVFENPDEFNMNR-------KWPPQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQK 373
Query: 199 YKILPGDK-CKSLQDIRFEFGMTMR---SLP 225
P K L I + LP
Sbjct: 374 ---FPDLKVAVPLGKINYTPLNRDVGIVDLP 401
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 40.3 bits (95), Expect = 3e-04
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P F D DRF + + + + F GP C+G+ A L++ ++ + R L
Sbjct: 336 PRVFADADRFDITV---KREAPSIAFGGGPHFCLGTALARLELTEAVAALATR---LDP- 388
Query: 206 KCKSLQ---DIRFEFGMTMR---SLP 225
Q +I + + + +LP
Sbjct: 389 ----PQIAGEITWRHELGVAGPDALP 410
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 40.0 bits (94), Expect = 4e-04
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
+P + R + F GP C G A +++ T+ L+R
Sbjct: 336 DAANPEPWKLDF----SRRSISHSTFGGGPHRCAGMHLARMEVIVTLEEWLKRI 385
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 39.9 bits (94), Expect = 4e-04
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
F +P++F RNP+ ++ F G C+G++ A L++ +LRR
Sbjct: 312 EAVFCEPEKFDV----QRNPNSHLAFGFGTHFCLGNQLARLELSLMTERVLRRL 361
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 39.9 bits (94), Expect = 4e-04
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 22/92 (23%)
Query: 139 RHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRR 198
P+ + NP + DR NP+ ++ F G C GS + I +L++
Sbjct: 314 FDPEHFPNPGSIELDR--------PNPTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKK 365
Query: 199 YKILPGDKCKSL------QDIRFEFGMTMRSL 224
+PG + + + R
Sbjct: 366 ---MPG-----VDLAVPIDQLVWRTRFQRRIP 389
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 39.5 bits (93), Expect = 5e-04
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
P ++ PD F R+P + F G R C+GS A Q++ ++ + R LPG
Sbjct: 315 PRRYDRPDDFDI----ERDPVPSMSFGAGMRYCLGSYLARTQLRAAVAALAR----LPGL 366
Query: 206 K-CKSLQDIRFEFGMTMR---SLP 225
+ + + ++ R SLP
Sbjct: 367 RLGCASDALAYQPRTMFRGLASLP 390
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 39.6 bits (93), Expect = 5e-04
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 138 HRHPQLWNNPNQFDPDR-FLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTIL 196
+R P+ + P+ F+ R L +S+ + ++ F G C+G+ +A +++ + +L
Sbjct: 348 NRDPEAFEQPDVFNIHREDLGIKSAFSGAARHLAFGSGIHNCVGTAFAKNEIEIVANIVL 407
Query: 197 RRY 199
+
Sbjct: 408 DKM 410
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 38.0 bits (89), Expect = 0.001
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
+ P + P + DR P + +G C+G+ A +++ + L
Sbjct: 312 NLDPASFEAPEEVRFDR-------GLAPIRHTTMGVGAHRCVGAGLARMEVIVFLREWLG 364
Query: 198 RY 199
Sbjct: 365 GM 366
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
P QF +P +F P R + ++ F G C+G A L+M+ + +L R
Sbjct: 371 PAQFPEPRKFDP----TRPANRHLAFGAGSHQCLGLHLARLEMRVLLDVLLDRV 420
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 38.1 bits (89), Expect = 0.002
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
F +PD F R P+ ++ F G C+G A L+MK +L +
Sbjct: 349 EEVFSNPDEFDI----TRFPNRHLGFGWGAHMCLGQHLAKLEMKIFFEELLPKL 398
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 37.2 bits (87), Expect = 0.003
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
+R P+++++P+ FD R P+ S + + F LGP C G + + T + +
Sbjct: 312 NRDPEVFDDPDVFDHTRP-PAASRN------LSFGLGPHSCAGQIISRAEATTVFAVLAE 364
Query: 198 RY 199
RY
Sbjct: 365 RY 366
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 36.9 bits (86), Expect = 0.004
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGY--VPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
+ DPDRF P R G + F G C+G+ A L+ + + I+ R+
Sbjct: 323 SDAHDDPDRFDP----SRKSGGAAQLSFGHGVHFCLGAPLARLENRVALEEIIARF 374
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 36.8 bits (86), Expect = 0.004
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 151 DPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPG 204
DRF R + ++ F G CIG+ A LQ++ + ++ R P
Sbjct: 309 PGDRFDI----TREKATHMAFGHGIHHCIGAPLARLQLRVALPAVVGR---FPS 355
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 35.3 bits (82), Expect = 0.012
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 146 NPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRY 199
P +F DR P ++ F G C+G++ A +Q++ IL R+
Sbjct: 352 RPEEFIIDR--------PRPRQHLSFGFGIHRCVGNRLAEMQLRILWEEILTRF 397
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 35.3 bits (82), Expect = 0.012
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 24/91 (26%)
Query: 147 PNQF--DPDRFLPSQSSHRNPSGY-VPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILP 203
DRF R + F GP C G+ + ++ + + R P
Sbjct: 325 ERAHGPTADRFDL----TRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYAR---FP 377
Query: 204 GDKCKSLQ------DIRFEFGMTMR---SLP 225
L ++R + +T LP
Sbjct: 378 H-----LDLAVPAAELRNKPVVTQNDLFELP 403
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 35.0 bits (81), Expect = 0.017
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFS-LGPRGCIGSKYAMLQMKTTISTILRRY 199
++F DP F RNP+ ++ F G C+G+ A +++ + R+
Sbjct: 357 ESKFADPWTFDL----ARNPNPHLGFGGGGAHFCLGANLARREIRVAFDELRRQM 407
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 34.6 bits (80), Expect = 0.024
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 147 PNQF-DPDRFLPSQSSHRNPSGYVPFS-LGPRGCIGSKYAMLQMKTTISTILRRY 199
F DP F RNP+ +V F G CIG+ A + + + +
Sbjct: 348 EEVFQDPFTFNI----LRNPNPHVGFGGTGAHYCIGANLARMTINLIFNAVADHM 398
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 33.7 bits (78), Expect = 0.041
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
+R ++ P+ F R + H + F +G C+G+ A L+ ++ IL
Sbjct: 265 NRDETFFDEPDLFKIGR----REMH------LAFGIGIHMCLGAPLARLEASIALNDILN 314
Query: 198 RY 199
+
Sbjct: 315 HF 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.45
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 40/133 (30%)
Query: 116 LWFAWGTSDLKRATI-GIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRN---------P 165
L T + + + ++I R L+N+ F + + P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAK-YNVSRLQPYLKLRQALLELRP 149
Query: 166 SGYVPFSL-GPRGCIGSKYAMLQMKTT-ISTILRRYKILPGDKCKSLQDIRFEFG---MT 220
+ V + G G G KT + YK+ + +F +
Sbjct: 150 AKNV--LIDGVLGS-G--------KTWVALDVCLSYKVQC----------KMDFKIFWLN 188
Query: 221 MRSLPGNDIRIEP 233
+++ + +E
Sbjct: 189 LKNCNSPETVLEM 201
Score = 29.4 bits (65), Expect = 1.1
Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 45/203 (22%)
Query: 48 SMSVQCVGLLL--NKSL-NAPTNGPVFRGSSDDFILTLSSQMGENL--TCLYC--YHLPI 100
+ ++ C LL K + + + S D +TL+ ++L L C LP
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP- 319
Query: 101 FICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQS 160
R +P + + I + W+N + D+
Sbjct: 320 ---REVLTTNP-------------RRLSIIAES---IRDGLATWDNWKHVNCDKLTTIIE 360
Query: 161 S---HRNPSG----YVPFSLGPRGC-IGSK-YAML--QMKTT----ISTILRRYKILPGD 205
S P+ + S+ P I + +++ + + + L +Y ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 206 KCK---SLQDIRFEFGMTMRSLP 225
+ S+ I E + + +
Sbjct: 421 PKESTISIPSIYLELKVKLENEY 443
>2cb4_A Mosquitocidal toxin; ADP-ribosyltransferase; 2.50A {Bacillus
sphaericus} PDB: 2cb6_A
Length = 291
Score = 29.9 bits (66), Expect = 0.68
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 132 IFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTT 191
IF+ G P++ N D L + +PS +V + +G + +
Sbjct: 89 IFLNGFI--PRVTNQNLSPVEDTHLLNYLRTNSPSIFVSTTRARYNNLGLEITPWTPHSA 146
Query: 192 ISTILRRYKI 201
+ I+ RY+I
Sbjct: 147 NNNIIYRYEI 156
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like
structure, beta sheet, isomerase; 1.30A {Streptococcus
suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*
Length = 197
Score = 27.2 bits (61), Expect = 3.5
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 16 LRYLPTY-KWTSQELLNSK-FGLPTEAYHGFAVLS 48
LR T+ + SK +P +GF VLS
Sbjct: 99 LREGETFGNTYQTVIDASKSIFVPRGVANGFQVLS 133
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center
for structural genomics, JCSG; HET: MSE EPE; 1.60A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 443
Score = 27.9 bits (62), Expect = 3.5
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 19/61 (31%)
Query: 111 PKCTQLWFAWGTSDLKRATIGIFI-YGL-----------HRHPQLWNNPNQFDPDRFLPS 158
PK QL + A +G Y L + + N F+P
Sbjct: 10 PKPHQLKW-------HEAEMGAVFHYDLHVFDGIRYGQGNNRINPIEDYNIFNPTELNTD 62
Query: 159 Q 159
Q
Sbjct: 63 Q 63
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics,
D-alanyl-lipoteichoic acid biosynthesis structure
initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Length = 407
Score = 26.5 bits (58), Expect = 9.8
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 152 PDRFLPSQSSHRNPSGYVPFSLGPRGC 178
D P+ + + Y P+ LG G
Sbjct: 55 FDGAHPAVLAEKYNRSYRPYLLGQGGA 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.445
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,558,080
Number of extensions: 191391
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 81
Length of query: 234
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 143
Effective length of database: 4,160,982
Effective search space: 595020426
Effective search space used: 595020426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)