RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16721
(234 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 101 bits (252), Expect = 1e-25
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 126 KRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAM 185
K + I Y LHR P+ W P +F P+RF + +P Y PF GPR CIG ++A+
Sbjct: 363 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFAL 422
Query: 186 LQMKTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+ MK + +L+ + P + + ++ G ++ +++E R
Sbjct: 423 MNMKLALIRVLQNFSFKPCKETQ--IPLKLSLGGLLQPEKPVVLKVESR 469
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 100 bits (250), Expect = 2e-25
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 76 DDFILTLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIY 135
+ + + T + + F ++ G S K T+ +Y
Sbjct: 307 PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLY 366
Query: 136 GLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTI 195
+H + W +P F P+RFL S VPFSLG R C+G A ++M + +
Sbjct: 367 SVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLARMEMFLFFTAL 426
Query: 196 LRRYKI-LPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
L+R+ + P + + D++ GMT++ P I E R
Sbjct: 427 LQRFHLHFPHEL---VPDLKPRLGMTLQPQPYL-ICAERR 462
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 99.4 bits (246), Expect = 1e-24
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 6/151 (3%)
Query: 89 NLTCLYCYHLPIFICRATKDQSPKCTQLWFAW-----GTSDLKRATIGIFIYGLHRHPQL 143
+ + I + D P G K + + P+
Sbjct: 315 DRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRY 374
Query: 144 WNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILP 203
+ PN F+P FL + + + G++PFSLG R C+G A ++ +TIL+ + I
Sbjct: 375 FETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIAS 434
Query: 204 GDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
+ + E G+ P IR R
Sbjct: 435 PVPPEDIDLTPRESGVGNVP-PSYQIRFLAR 464
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 92.5 bits (228), Expect = 2e-22
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 133 FIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTI 192
+ + + + NP FDP FL + + ++PFS G R C+G A +++ +
Sbjct: 365 SLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELFLFL 424
Query: 193 STILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
++IL+ + + K+L G + P
Sbjct: 425 TSILQNFNLKSLVDPKNLDTTPVVNGFASVPPF-YQLCFIPI 465
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 87.6 bits (215), Expect = 1e-20
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 3/142 (2%)
Query: 94 YCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPD 153
+ + + G + + +R P+ + +P+ F P
Sbjct: 305 NVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPA 364
Query: 154 RFL-PSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQD 212
R+ P Q N ++PF G C+G+ +A++Q+K S +LR Y+ +
Sbjct: 365 RYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPE--SY 422
Query: 213 IRFEFGMTMRSLPGNDIRIEPR 234
M ++ +R R
Sbjct: 423 RNDHSKMVVQLAQPAAVRYRRR 444
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 83.2 bits (204), Expect = 4e-19
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 8/159 (5%)
Query: 77 DFILTLSSQMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYG 136
D + + + A K + + I
Sbjct: 298 DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQ 357
Query: 137 LHRHPQLW-NNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTI 195
LHR +W ++ +F P+RF S + PF G R CIG ++A+ + + +
Sbjct: 358 LHRDKTIWGDDVEEFRPERFENP--SAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMM 415
Query: 196 LRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
L+ + ++ + +T++ ++ + +
Sbjct: 416 LKHFDFEDHTN----YELDIKETLTLKPEGFV-VKAKSK 449
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 78.3 bits (191), Expect = 2e-17
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 92 CLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFD 151
+ P+ T + G I + +R ++++NP++FD
Sbjct: 306 EAVRWTAPVKSFMRTALADTEVRGQNIKRGD------RIMLSYPSANRDEEVFSNPDEFD 359
Query: 152 PDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKIL 202
RF P+ ++ F G C+G A L+MK +L + K +
Sbjct: 360 ITRF---------PNRHLGFGWGAHMCLGQHLAKLEMKIFFEELLPKLKSV 401
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 77.2 bits (188), Expect = 5e-17
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 11/141 (7%)
Query: 92 CLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFD 151
+ L T + G + + I +RHP + + FD
Sbjct: 271 DVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFD 330
Query: 152 PDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQ 211
R + ++ F G C+G+ A +++ + ++ R+ L +
Sbjct: 331 ATRTVKE---------HLAFGHGVHFCLGAPLARMEVTLALESLFGRFPDL--RLADPAE 379
Query: 212 DIRFEFGMTMRSLPGNDIRIE 232
++ + + +
Sbjct: 380 ELPPVPSLISNGHQRLPVLLH 400
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 76.0 bits (185), Expect = 1e-16
Identities = 20/147 (13%), Positives = 52/147 (35%), Gaps = 11/147 (7%)
Query: 86 MGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWN 145
+ + + + + G + + +T+ + +R P+ +
Sbjct: 266 RRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFP 325
Query: 146 NPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGD 205
+P++FD R G++ F G C+G A L+ + + + R+ L
Sbjct: 326 DPHRFDVTRD---------TRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLG 376
Query: 206 KCKSLQDIRFEFGMTMRSLPGNDIRIE 232
D+ + + +R + +R++
Sbjct: 377 --IDADDVVWRRSLLLRGIDHLPVRLD 401
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 75.6 bits (184), Expect = 1e-16
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 9/140 (6%)
Query: 85 QMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLW 144
+ +L + L + + + I +R +++
Sbjct: 262 KANPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEVF 321
Query: 145 NNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPG 204
NP++F+ +R P P + F G CI A ++ T ST+ +++ L
Sbjct: 322 ENPDEFNMNRKWP-------PQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKFPDL-- 372
Query: 205 DKCKSLQDIRFEFGMTMRSL 224
L I + +
Sbjct: 373 KVAVPLGKINYTPLNRDVGI 392
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 75.2 bits (183), Expect = 2e-16
Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 10/143 (6%)
Query: 92 CLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFD 151
+ D + + + + F
Sbjct: 252 EAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFR 311
Query: 152 PDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQ 211
P+RFL + + Y PF LG R C+G +A+L+ + RR+++ P L
Sbjct: 312 PERFLEERGTPSGR--YFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDP------LP 363
Query: 212 DIRFEFGMTMRSLPGNDIRIEPR 234
R +T+R P + PR
Sbjct: 364 FPRVLAQVTLR--PEGGLPARPR 384
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 73.5 bits (179), Expect = 7e-16
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 133 FIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLG----PRGCIGSKYAMLQM 188
+YG + P+LW++P++F P+RF N +P G C G + M
Sbjct: 312 DLYGTNHDPRLWDHPDEFRPERFAER---EENLFDMIPQGGGHAEKGHRCPGEGITIEVM 368
Query: 189 KTTISTILRRYKILPGDKCKSLQDIRFEFGMTMRSLPGNDIRIEPR 234
K ++ ++ + + ++ M G + R
Sbjct: 369 KASLDFLVHQIEYDVPEQSLHYS----LARMPSLPESGFVMSGIRR 410
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 72.6 bits (176), Expect = 2e-15
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 14/142 (9%)
Query: 92 CLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFD 151
+ F Q G S K + + I R +++ P+ FD
Sbjct: 273 RNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFD 332
Query: 152 PDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQ 211
R S + + GP C G A L+ + + TI RR+ + +
Sbjct: 333 VRRD---------TSASLAYGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLK-----E 378
Query: 212 DIRFEFGMTMRSLPGNDIRIEP 233
F + R++ ++ ++P
Sbjct: 379 TPVFGYHPAFRNIESLNVILKP 400
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 72.5 bits (176), Expect = 2e-15
Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 10/140 (7%)
Query: 85 QMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLW 144
L L T K + + + G + P+ +
Sbjct: 259 HEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHF 318
Query: 145 NNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPG 204
NP + DR NP+ ++ F G C GS + I +L++ +
Sbjct: 319 PNPGSIELDRP--------NPTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMPGV-- 368
Query: 205 DKCKSLQDIRFEFGMTMRSL 224
D + + + R
Sbjct: 369 DLAVPIDQLVWRTRFQRRIP 388
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 72.1 bits (175), Expect = 2e-15
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 21/145 (14%)
Query: 92 CLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRH-PQLWN-NPNQ 149
+ I A +D G + I YG + ++
Sbjct: 277 RFSTPTSHVLIRFAAED---------VPVGDRVIPAGDALIVSYGALGRDERAHGPTADR 327
Query: 150 FDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKS 209
FD R + + ++ F GP C G+ + ++ + + R+ L D
Sbjct: 328 FDLTRT--------SGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHL--DLAVP 377
Query: 210 LQDIRFEFGMTMRSLPGNDIRIEPR 234
++R + +T L +R+
Sbjct: 378 AAELRNKPVVTQNDLFELPVRLAHH 402
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 70.2 bits (170), Expect = 1e-14
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 112 KCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPF 171
+ G + I +R L +P+ D +R V F
Sbjct: 296 LAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDANRA---------AVSDVGF 346
Query: 172 SLGPRGCIGSKYAMLQMKTTISTILRRYK 200
G C+G+ A ++ T+ RR+
Sbjct: 347 GHGIHYCVGAALARSMLRMAYQTLWRRFP 375
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 68.3 bits (165), Expect = 5e-14
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 138 HRHPQLWNNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILR 197
+R P L + ++ D R P +V F G C+G+ A L+++T + + R
Sbjct: 312 NRDPALAPDVDRLDVTR---------EPIPHVAFGHGVHHCLGAALARLELRTVFTELWR 362
Query: 198 RYKILPGDKCKSLQDIRFEFGMTMRSL 224
R+ L QD F L
Sbjct: 363 RFPAL--RLADPAQDTEFRLTTPAYGL 387
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 67.1 bits (162), Expect = 1e-13
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 9/116 (7%)
Query: 85 QMGENLTCLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLW 144
++ E + + + T + G K I + +
Sbjct: 263 ELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDEREN 322
Query: 145 NNPNQFDPDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYK 200
P D R + F G C+G A ++ T+ L R
Sbjct: 323 ACPMHVDFSR---------QKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIP 369
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 67.2 bits (162), Expect = 1e-13
Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 17/133 (12%)
Query: 92 CLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFD 151
+ H + + + G + + +R P+++ +P++ D
Sbjct: 275 LRWIPHRNAVGLSRIALEDVEIKGVRIRAGD------AVYVSYLAANRDPEVFPDPDRID 328
Query: 152 PDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQ 211
+R +P+ +V F GP C G A L+ + + +L R L + +
Sbjct: 329 FER---------SPNPHVSFGFGPHYCPGGMLARLESELLVDAVLDRVPGL--KLAVAPE 377
Query: 212 DIRFEFGMTMRSL 224
D+ F+ G +R
Sbjct: 378 DVPFKKGALIRGP 390
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 64.5 bits (155), Expect = 9e-13
Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 21/138 (15%)
Query: 95 CYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFDPDR 154
+ P+ + K G + ++I +R +++ +P+ F PDR
Sbjct: 249 RFSPPVMRTIRVTKEKVKIRDQVIDEGE------LVRVWIASANRDEEVFKDPDSFIPDR 302
Query: 155 FLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILPGDKCKSLQDIR 214
P+ ++ F G C+G+ A L+ + + +++++ K + I
Sbjct: 303 ---------TPNPHLSFGSGIHLCLGAPLARLEARIALEEFAKKFRVKEIVKK---EKID 350
Query: 215 FEFGMTMRSLPGNDIRIE 232
E R L +R+E
Sbjct: 351 NEVLNGYRKLV---VRVE 365
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 60.2 bits (144), Expect = 2e-11
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 92 CLYCYHLPIFICRATKDQSPKCTQLWFAWGTSDLKRATIGIFIYGLHRHPQLWNNPNQFD 151
Y I + + + G ++ + D
Sbjct: 236 EENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASAN-RDEEVFHD 294
Query: 152 PDRFLPSQSSHRNPSGYVPFSLGPRGCIGSKYAMLQMKTTISTILRRYKILP 203
++F+P RNP+ ++ F G C+G+ A L+ + I +R++ +
Sbjct: 295 GEKFIP----DRNPNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFRHIE 342
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 25.1 bits (55), Expect = 2.3
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 195 ILRRYKILPGDKCKSLQDIRFEFGMTM 221
+LR + + +L+++ +F +T
Sbjct: 13 VLRMRFGIDMNTDYTLEEVGKQFDVTR 39
>d1tuva_ d.58.4.11 (A:) Hypothetical protein YgiN {Escherichia coli
[TaxId: 562]}
Length = 103
Score = 25.8 bits (56), Expect = 2.5
Identities = 4/30 (13%), Positives = 6/30 (20%)
Query: 127 RATIGIFIYGLHRHPQLWNNPNQFDPDRFL 156
G Y + PD +
Sbjct: 32 LKEEGCHGYAPMVDCAAGVSFQSMAPDSIV 61
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 26.0 bits (56), Expect = 5.1
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 6 LEYLVFKSKYLRYLP 20
L ++ +K Y R+LP
Sbjct: 23 LGWVTYKRTYARWLP 37
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima
[TaxId: 2336]}
Length = 87
Score = 24.3 bits (53), Expect = 6.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 195 ILRRYKILPGDKCKSLQDIRFEFGMT 220
+LR L K K+L+++ F +T
Sbjct: 26 VLRMRYGLLDGKPKTLEEVGQYFNVT 51
>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 1.1 [TaxId: 10090]}
Length = 112
Score = 24.6 bits (53), Expect = 6.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 71 FRGSSDDFILTLSSQMGENLTCLYCYH 97
GS DF L +S E+L YC+
Sbjct: 69 GSGSGTDFTLKISRVEAEDLGVYYCWQ 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.445
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 902,757
Number of extensions: 40225
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 27
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)