BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16725
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SYA|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) In Complex With Sodium And
Pip2
pdb|3SYO|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) In Complex With Sodium
Length = 340
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 168/332 (50%), Gaps = 61/332 (18%)
Query: 147 LRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAV 206
++R V K G C V N + T D FT+L++ +WR+ IF + + +TWL F +
Sbjct: 6 IQRYVRKDGKCNVHHGNVRETYRYLT---DIFTTLVDLKWRFNLLIFVMVYTVTWLFFGM 62
Query: 207 GWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCP 266
WW+IAY GD+ + DP PCVT ++ F+++FLFS+ET+ + GYG R+ CP
Sbjct: 63 IWWLIAYIRGDM--DHIEDP--SWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCP 118
Query: 267 EAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIG 326
E I L+ IQS+ G ++NA G +F K+++PKKR++ L+FS AVI RDG+ L++R+G
Sbjct: 119 EGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVG 178
Query: 327 DLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNI---TVDD---------------- 367
DLR SH++ A +RA + + T EGE IP + +N+ T DD
Sbjct: 179 DLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQ 238
Query: 368 -----------------------------------GGSSYLPSEIQWGHRFMPMFIKRDC 392
SSY+ SEI WG+RF P+ D
Sbjct: 239 QSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDG 298
Query: 393 KYYVDYARFQNTVLVNMPLCSAYQYEKLTRDA 424
Y VDY F T + P SA + +L A
Sbjct: 299 FYEVDYNSFHETYETSTPSLSAKELAELANRA 330
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 71 LRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAV 130
++R V K G C V N + T D FT+L++ +WR+ IF + + +TWL F +
Sbjct: 6 IQRYVRKDGKCNVHHGNVRETYRYLT---DIFTTLVDLKWRFNLLIFVMVYTVTWLFFGM 62
Query: 131 GWWIIA 136
WW+IA
Sbjct: 63 IWWLIA 68
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In
Complex With Pip2
pdb|3SPJ|A Chain A, Apo Inward Rectifier Potassium Channel Kir2.2 I223l Mutant
Length = 343
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 140/220 (63%), Gaps = 5/220 (2%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R V K G C V N + A D FT+ ++ RWR++ +F+L+F+++WLLF + +
Sbjct: 9 RFVKKNGQCNVEFTNMDDKPQRYIA--DMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIF 66
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
W+IA HGDL+ D F PCV V+ F+ +FLFS+ETQ + GYG R CP A
Sbjct: 67 WLIALIHGDLENPGGDDTFK---PCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLA 123
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
+F+V +QSI G +I++ G I AK+A+PKKR+Q LLFS AV+ RDG+ L+WR+G+L
Sbjct: 124 VFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNL 183
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG 368
RKSHL+ A +RA + R+T EGE IP + +++ D G
Sbjct: 184 RKSHLVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKG 223
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 73 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 132
R V K G C V N + A D FT+ ++ RWR++ +F+L+F+++WLLF + +
Sbjct: 9 RFVKKNGQCNVEFTNMDDKPQRYIA--DMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIF 66
Query: 133 WIIA 136
W+IA
Sbjct: 67 WLIA 70
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 370 SSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLV-NMPLCSAYQYEKLTRDALDLV 428
SSYL SEI WGHRF P+ + +Y VDY+ F T V + P CSA DLV
Sbjct: 279 SSYLASEILWGHRFEPVLFEEKNQYKVDYSHFHKTYEVPSTPRCSAK----------DLV 328
Query: 429 EKK 431
E K
Sbjct: 329 ENK 331
>pdb|3SYC|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) D228n Mutant
Length = 340
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 61/332 (18%)
Query: 147 LRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAV 206
++R V K G C V N + T D FT+L++ +WR+ IF + + +TWL F +
Sbjct: 6 IQRYVRKDGKCNVHHGNVRETYRYLT---DIFTTLVDLKWRFNLLIFVMVYTVTWLFFGM 62
Query: 207 GWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCP 266
WW+IAY GD+ + DP PCVT ++ F+++FLFS+ET+ + GYG R+ CP
Sbjct: 63 IWWLIAYIRGDM--DHIEDP--SWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCP 118
Query: 267 EAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIG 326
E I L+ IQS+ G ++NA G +F K+++PKKR++ L+FS AVI RDG+ L++R+G
Sbjct: 119 EGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVG 178
Query: 327 DLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNI---TVDD---------------- 367
+LR SH++ A +RA + + T EGE IP + +N+ T DD
Sbjct: 179 NLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQ 238
Query: 368 -----------------------------------GGSSYLPSEIQWGHRFMPMFIKRDC 392
SSY+ SEI WG+RF P+ D
Sbjct: 239 QSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDG 298
Query: 393 KYYVDYARFQNTVLVNMPLCSAYQYEKLTRDA 424
Y VDY F T + P SA + +L A
Sbjct: 299 FYEVDYNSFHETYETSTPSLSAKELAELANRA 330
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 71 LRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAV 130
++R V K G C V N + T D FT+L++ +WR+ IF + + +TWL F +
Sbjct: 6 IQRYVRKDGKCNVHHGNVRETYRYLT---DIFTTLVDLKWRFNLLIFVMVYTVTWLFFGM 62
Query: 131 GWWIIA 136
WW+IA
Sbjct: 63 IWWLIA 68
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong
Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom
Resolution
pdb|3SPC|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Dioctanoylglycerol Pyrophosphate (Dgpp)
pdb|3SPI|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Pip2
Length = 343
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 140/220 (63%), Gaps = 5/220 (2%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R V K G C V N + A D FT+ ++ RWR++ +F+L+F+++WLLF + +
Sbjct: 9 RFVKKNGQCNVEFTNMDDKPQRYIA--DMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIF 66
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
W+IA HGDL+ D F PCV V+ F+ +FLFS+ETQ + GYG R CP A
Sbjct: 67 WLIALIHGDLENPGGDDTFK---PCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLA 123
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
+F+V +QSI G +I++ G I AK+A+PKKR+Q LLFS AV+ RDG+ L+WR+G+L
Sbjct: 124 VFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNL 183
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG 368
RKSH++ A +RA + R+T EGE IP + +++ D G
Sbjct: 184 RKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKG 223
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 73 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 132
R V K G C V N + A D FT+ ++ RWR++ +F+L+F+++WLLF + +
Sbjct: 9 RFVKKNGQCNVEFTNMDDKPQRYIA--DMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIF 66
Query: 133 WIIA 136
W+IA
Sbjct: 67 WLIA 70
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 370 SSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLV-NMPLCSAYQYEKLTRDALDLV 428
SSYL SEI WGHRF P+ + +Y VDY+ F T V + P CSA DLV
Sbjct: 279 SSYLASEILWGHRFEPVLFEEKNQYKVDYSHFHKTYEVPSTPRCSAK----------DLV 328
Query: 429 EKK 431
E K
Sbjct: 329 ENK 331
>pdb|3SYP|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant
pdb|3SYQ|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant In Complex With
Pip2
pdb|3SYQ|B Chain B, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant In Complex With
Pip2
Length = 340
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 167/332 (50%), Gaps = 61/332 (18%)
Query: 147 LRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAV 206
++R V K G C V N + T D FT+L++ +WR+ IF + + +TWL F +
Sbjct: 6 IQRYVRKDGKCNVHHGNVRETYRYLT---DIFTTLVDLKWRFNLLIFVMVYTVTWLFFGM 62
Query: 207 GWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCP 266
WW+IAY GD+ + DP PCVT ++ F+++FLFS+ET+ + GYG R+ CP
Sbjct: 63 IWWLIAYIRGDM--DHIEDP--SWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCP 118
Query: 267 EAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIG 326
E I L+ IQS+ G ++NA G +F K+++PKK ++ L+FS AVI RDG+ L++R+G
Sbjct: 119 EGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKAAETLVFSTHAVISMRDGKLCLMFRVG 178
Query: 327 DLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNI---TVDD---------------- 367
DLR SH++ A +RA + + T EGE IP + +N+ T DD
Sbjct: 179 DLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQ 238
Query: 368 -----------------------------------GGSSYLPSEIQWGHRFMPMFIKRDC 392
SSY+ SEI WG+RF P+ D
Sbjct: 239 QSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDG 298
Query: 393 KYYVDYARFQNTVLVNMPLCSAYQYEKLTRDA 424
Y VDY F T + P SA + +L A
Sbjct: 299 FYEVDYNSFHETYETSTPSLSAKELAELANRA 330
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 71 LRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAV 130
++R V K G C V N + T D FT+L++ +WR+ IF + + +TWL F +
Sbjct: 6 IQRYVRKDGKCNVHHGNVRETYRYLT---DIFTTLVDLKWRFNLLIFVMVYTVTWLFFGM 62
Query: 131 GWWIIA 136
WW+IA
Sbjct: 63 IWWLIA 68
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In
Complex With Pip2
Length = 343
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 139/220 (63%), Gaps = 5/220 (2%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R V K G C V N + A D FT+ ++ RWR++ +F+L+F+++WLLF + +
Sbjct: 9 RFVKKNGQCNVEFTNMDDKPQRYIA--DMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIF 66
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
W+IA HGDL+ D F PCV V+ F+ +FLFS+ETQ + GYG R CP A
Sbjct: 67 WLIALIHGDLENPGGDDTFK---PCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLA 123
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
+F+V +QSI G +I++ G I AK+A PKKR+Q LLFS AV+ RDG+ L+WR+G+L
Sbjct: 124 VFMVVVQSIVGCIIDSFMIGAIMAKMAAPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNL 183
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG 368
RKSH++ A +RA + R+T EGE IP + +++ D G
Sbjct: 184 RKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKG 223
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 73 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 132
R V K G C V N + A D FT+ ++ RWR++ +F+L+F+++WLLF + +
Sbjct: 9 RFVKKNGQCNVEFTNMDDKPQRYIA--DMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIF 66
Query: 133 WIIA 136
W+IA
Sbjct: 67 WLIA 70
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 370 SSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLV-NMPLCSAYQYEKLTRDALDLV 428
SSYL SEI WGHRF P+ + +Y VDY+ F T V + P CSA DLV
Sbjct: 279 SSYLASEILWGHRFEPVLFEEKNQYKVDYSHFHKTYEVPSTPRCSAK----------DLV 328
Query: 429 EKK 431
E K
Sbjct: 329 ENK 331
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 21/222 (9%)
Query: 148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
+R V K G C V N + SD FT+L++ +WRW + + F+L FA
Sbjct: 6 QRFVDKNGRCNVQHGNLGSETSRYL--SDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATL 63
Query: 208 WWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPE 267
+ L ++P+ + F P F +F FS+ET + GYG P T
Sbjct: 64 YM--------LGSAPIANQF----PA-----GFGGAFFFSVETLATVGYGDMHPQT--VY 104
Query: 268 AIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGD 327
A ++ +++ G+ AL G F K+++PKKR++ L+FS+ AVI RDG+ L++R+G+
Sbjct: 105 AHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGN 164
Query: 328 LRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGG 369
LR SH++ A++R L R T EGE +P + +L++ G
Sbjct: 165 LRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGA 206
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 72 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 131
+R V K G C V N + SD FT+L++ +WRW + + F+L FA
Sbjct: 6 QRFVDKNGRCNVQHGNLGSETSRYL--SDLFTTLVDLKWRWFFVSLAVLFLLLNTAFAT- 62
Query: 132 WWIIASKPTSSN 143
+++ S P ++
Sbjct: 63 LYMLGSAPIANQ 74
>pdb|3AUW|B Chain B, Cytoplasmic Domain Of Inward Rectifier Potassium Channel
Kir3.2 In Complex With Cadmium
pdb|3AUW|D Chain D, Cytoplasmic Domain Of Inward Rectifier Potassium Channel
Kir3.2 In Complex With Cadmium
Length = 182
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 76/180 (42%), Gaps = 54/180 (30%)
Query: 299 KRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYK 358
KR++ L+FS AVI RDG+ L++R+GDLR SH++ A +RA + + T EGE IP +
Sbjct: 1 KRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQ 60
Query: 359 YKLNI---TVDD------------------------------------------------ 367
+N+ T DD
Sbjct: 61 TDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGM 120
Query: 368 ---GGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDA 424
SSY+ SEI WG+RF P+ D Y VDY F T + P SA + +L A
Sbjct: 121 TCQARSSYITSEILWGYRFTPVLTLEDGFYEVDYNSFHETYETSTPSLSAKELAELANRA 180
>pdb|2E4F|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of
G-Protein-Gated Inward Rectifier Potassium Channel
Kir3.2
Length = 208
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 77/181 (42%), Gaps = 54/181 (29%)
Query: 298 KKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRY 357
+KR++ L+FS AVI RDG+ L++R+GDLR SH++ A +RA + + T EGE IP
Sbjct: 26 EKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLN 85
Query: 358 KYKLNI---TVDD----------------------------------------------- 367
+ +N+ T DD
Sbjct: 86 QTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATG 145
Query: 368 ----GGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRD 423
SSY+ SEI WG+RF P+ D Y VDY F T + P SA + +L
Sbjct: 146 MTCQARSSYITSEILWGYRFTPVLTLEDGFYEVDYNSFHETYETSTPSLSAKELAELANR 205
Query: 424 A 424
A
Sbjct: 206 A 206
>pdb|3AGW|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of
G-Protein-Gated Inward Rectifier Potassium Channel
Kir3.2 In The Absence Of Na+
pdb|3AT8|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Barium Chloride)
pdb|3AT9|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Barium Chloride And 10
Mm Magnesium Chloride)
pdb|3ATA|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Barium Chloride And 10
Mm Spermine)
pdb|3ATB|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Gadolinium Chloride)
pdb|3ATD|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Gadolinium Chloride
And 10 Mm Magnesium Chloride)
pdb|3ATE|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Praseodymium (Iii)
Acetate)
pdb|3ATF|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 200 Mm Cesium Chloride)
Length = 208
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 77/181 (42%), Gaps = 54/181 (29%)
Query: 298 KKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRY 357
+KR++ L+FS AVI RDG+ L++R+GDLR SH++ A +RA + + T EGE IP
Sbjct: 26 EKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLN 85
Query: 358 KYKLNI---TVDD----------------------------------------------- 367
+ +N+ T DD
Sbjct: 86 QTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATG 145
Query: 368 ----GGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRD 423
SSY+ SEI WG+RF P+ D Y VDY F T + P SA + +L
Sbjct: 146 MTCQARSSYITSEILWGYRFTPVLTLEDGFYEVDYNSFHETYETSTPSLSAKELAELANR 205
Query: 424 A 424
A
Sbjct: 206 A 206
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|B Chain B, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|C Chain C, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|D Chain D, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
Length = 270
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 298 KKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRY 357
+KR++ L+FS AVI RDG+ L+WR+G+LRKSHL+ A +RA L R+T EGE IP
Sbjct: 29 EKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLD 88
Query: 358 KYKLNITVDDG 368
+ +N+ D G
Sbjct: 89 QIDINVGFDSG 99
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 370 SSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLV-NMPLCSAYQYEKLTRDALDLV 428
SSYL +EI WGHR+ P+ + Y VDY+RF T V N PLCSA DL
Sbjct: 155 SSYLANEILWGHRYEPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSAR----------DLA 204
Query: 429 EKK 431
EKK
Sbjct: 205 EKK 207
>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|B Chain B, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|C Chain C, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|D Chain D, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
Length = 208
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 81/189 (42%), Gaps = 65/189 (34%)
Query: 298 KKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRY 357
+KR++ L+FS AVI RDG+ L+WR+G+L+KSHL+ A +RA L R+T EGE IP
Sbjct: 24 EKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITSEGEYIPLD 83
Query: 358 KYKLNITVDDG-GSSYLPSEIQWGHRF---MPMF-------------------------- 387
+ +N+ D G +L S I H P++
Sbjct: 84 QIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATA 143
Query: 388 IKRDCK------------------------YYVDYARFQNTVLV-NMPLCSAYQYEKLTR 422
+ + C+ Y VDY+RF T V N PLCSA
Sbjct: 144 MTKQCRSSYLANEILWGHRYEPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSAR------- 196
Query: 423 DALDLVEKK 431
DL EKK
Sbjct: 197 ---DLAEKK 202
>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|J Chain J, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|K Chain K, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|L Chain L, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
Length = 309
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 300 RSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKY 359
R++ L+FS AVI RDG+ L+WR+G+LRKSHL+ A +RA L R+T EGE IP +
Sbjct: 70 RNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQI 129
Query: 360 KLNITVDDG 368
+N+ D G
Sbjct: 130 DINVGFDSG 138
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 370 SSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLV-NMPLCSAYQYEKLTRDALDLV 428
SSYL +EI WGHR+ P+ + Y VDY+RF T V N PLCSA DL
Sbjct: 194 SSYLANEILWGHRYEPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSAR----------DLA 243
Query: 429 EKK 431
EKK
Sbjct: 244 EKK 246
>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel
Length = 212
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 298 KKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRY 357
+KR++ L+FS+ AVI RDG+ L++R+G+LR SH++ A++R L R T EGE +P
Sbjct: 29 EKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLD 88
Query: 358 KYKLNITVDDGG 369
+ +L++ G
Sbjct: 89 QLELDVGFSTGA 100
>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic
Pore Domain
Length = 207
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 299 KRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYK 358
+R++ L+FS+ AVI RDG+ L++R+G+LR SH++ A++R L R T EGE +P +
Sbjct: 25 ERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVEAQIRCKLLKSRQTPEGEFLPLDQ 84
Query: 359 YKLNITVDDGGSS 371
+L++ G
Sbjct: 85 LELDVGFSTGADQ 97
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 27/216 (12%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R+++ GS +++L + L D + L+ W T+ T +++T LFA+ +
Sbjct: 13 RILNSDGSSNITRLGLEKRGWL----DDHYHDLLTVSWPVFITLITGLYLVTNALFALAY 68
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
GD+ + F D +F FS++T + GYG IP P A
Sbjct: 69 LAC----GDVIENARPGSFTD-------------AFFFSVQTMATIGYGKLIPI--GPLA 109
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
LV+++++ G+L A+ +I+A+ +P + +LFS + VI +G+ L+ R+ +L
Sbjct: 110 NTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANL 166
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNIT 364
R +I A + + +++EG M+ R + L +T
Sbjct: 167 RIEQIIEADVHLVLVRSEISQEG-MVFRRFHDLTLT 201
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 27/216 (12%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R+++ GS +++L + L D + L+ W T+ T +++T LFA+ +
Sbjct: 13 RILNSDGSSNITRLGLEKRGWL----DDHYHDLLTVSWPVFITLITGLYLVTNALFALAY 68
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
GD+ + F D +F FS++T + GYG IP P A
Sbjct: 69 LAC----GDVIENARPGSFTD-------------AFFFSVQTMATIGYGKLIPI--GPLA 109
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
LV+++++ G+L A+ +I+A+ +P + +LFS + VI +G+ L+ R+ +L
Sbjct: 110 NTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANL 166
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNIT 364
R +I A + + +++EG M+ R + L +T
Sbjct: 167 RIEQIIEADVHLVLVRSEISQEG-MVFRRFHDLTLT 201
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 26/210 (12%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R+++ GS +++L + L D + L+ W T+ T +++T LFA+ +
Sbjct: 13 RILNSDGSSNITRLGLEKRGWL----DDHYHDLLTVSWPVFITLITGLYLVTNALFALAY 68
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
GD+ + F D +F FS++T + GYG IP P A
Sbjct: 69 LAC----GDVIENARPGSFTD-------------AFFFSVQTMATIGYGKLIPI--GPLA 109
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
LV+++++ G+L A+ +I+A+ +P + +LFS + VI +G+ L+ R+ +L
Sbjct: 110 NTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANL 166
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYK 358
R +I A + + +++EG + R+
Sbjct: 167 RIEQIIEADVHLVLVRSEISQEGMVFRRFH 196
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 27/216 (12%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R+++ GS +++L + L D + L+ W T+ T +++T LFA+ +
Sbjct: 13 RILNSDGSSNITRLGLEKRGWL----DDHYHDLLTVSWPVFITLITGLYLVTNALFALAY 68
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
GD+ + F D +F FS++T + GYG IP P A
Sbjct: 69 LAC----GDVIENARPGSFTD-------------AFFFSVQTMATIGYGKLIPI--GPLA 109
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
LV+++++ G+L A+ +I+A+ +P + +LFS + VI +G+ L+ R+ +L
Sbjct: 110 NTLVTLEALCGMLGLAVAARLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANL 166
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNIT 364
R +I A + + +++EG M+ R + L +T
Sbjct: 167 RIEQIIEADVHLVLVRSEISQEG-MVFRRFHDLTLT 201
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 27/216 (12%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R+++ GS +++L + L D + L+ W T+ T +++T LFA+ +
Sbjct: 13 RILNSDGSSNITRLGLEKRGWL----DDHYHDLLTVSWPVFITLITGLYLVTNALFALAY 68
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
GD+ + F D +F FS++T + GYG IP P A
Sbjct: 69 LAC----GDVIENARPGSFTD-------------AFFFSVQTMATIGYGKLIPI--GPLA 109
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
LV+++++ G+L A+ +I+A+ +P + +LFS + VI +G+ L+ R+ +L
Sbjct: 110 NTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANL 166
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNIT 364
R +I A + + +++EG M+ R + L +T
Sbjct: 167 RIEAIIEADVHLVLVRSEISQEG-MVFRRFHDLTLT 201
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 27/216 (12%)
Query: 149 RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGW 208
R+++ GS +++L + L D + L+ W T+ T +++T LFA+ +
Sbjct: 13 RILNSDGSSNITRLGLEKRGWL----DDHYHDLLTVSWPVFITLITGLYLVTNALFALAY 68
Query: 209 WIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268
GD+ + F D +F FS++T + GYG IP P A
Sbjct: 69 LAC----GDVIENARPGSFTD-------------AFFFSVQTMATIGYGKLIPI--GPLA 109
Query: 269 IFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDL 328
LV+++++ G+L A+ +I+A+ +P + +LFS + VI +G+ L+ R+ +L
Sbjct: 110 NTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANL 166
Query: 329 RKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNIT 364
R +I A + + +++EG M+ R + L +T
Sbjct: 167 RIEAIIEADVHLVLVRSEVSQEG-MVFRRFHDLTLT 201
>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein
Activated Inward Rectifier Potassium Channel 1
Length = 207
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 299 KRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYK 358
+R++ L FS+ AVI RDG+ L +R+G+LR SH + A++R L R T EGE +P +
Sbjct: 25 ERAETLXFSEHAVISXRDGKLTLXFRVGNLRNSHXVSAQIRCKLLKSRQTPEGEFLPLDQ 84
Query: 359 YKLNITVDDGG 369
+L++ G
Sbjct: 85 LELDVGFSTGA 95
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 26/166 (15%)
Query: 190 WTIFTLS----FVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFL 245
W +F S FV+ LFA + Y GD + N + P F+ +F
Sbjct: 60 WPVFFASLAALFVVNNTLFA-----LLYQLGDAPIA------NQSPPG------FVGAFF 102
Query: 246 FSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLL 305
FS+ET + GYG P T AI +++ G+ AL+ G++FA+ A+P+ + ++
Sbjct: 103 FSVETLATVGYGDMHPQTVYAHAI--ATLEIFVGMSGIALSTGLVFARFARPRAK---IM 157
Query: 306 FSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREG 351
F+ A++ +G L+ R + R++ + A+ + + RR + EG
Sbjct: 158 FARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRRRESSEG 203
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 190 WTIFTLS----FVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFL 245
W +F S FV+ LFA + Y GD + N + P F+ +F
Sbjct: 60 WPVFFASLAALFVVNNTLFA-----LLYQLGDAPIA------NQSPPG------FVGAFF 102
Query: 246 FSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLL 305
FS+ET + GYG P T AI +++ G+ AL+ G++FA+ A+P+ + ++
Sbjct: 103 FSVETLATVGYGDMHPQTVYAHAI--ATLEIFVGMSGIALSTGLVFARFARPRAK---IM 157
Query: 306 FSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREG 351
F+ A++ +G L+ R + R++ + A+ + + R + EG
Sbjct: 158 FARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEG 203
>pdb|2QA0|A Chain A, Structure Of Adeno-Associated Virus Serotype 8
pdb|3RA2|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA4|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA8|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA9|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RAA|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
Length = 519
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 25/113 (22%)
Query: 316 DGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSS---- 371
D EY+L + +G + L + MIP+Y Y +T+++G +
Sbjct: 129 DSEYQLPYVLGSAHQGCLPPFPADVF-----------MIPQYGY---LTLNNGSQAVGRS 174
Query: 372 ------YLPSE-IQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQY 417
Y PS+ ++ G+ F + D ++ YA Q+ + PL Y Y
Sbjct: 175 SFYCLEYFPSQMLRTGNNFQFTYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLY 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,626,915
Number of Sequences: 62578
Number of extensions: 507819
Number of successful extensions: 1193
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 53
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)