Query psy16725
Match_columns 434
No_of_seqs 312 out of 943
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:25:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sya_A G protein-activated inw 100.0 3.2E-79 1.1E-83 616.3 25.0 274 144-424 3-330 (340)
2 3spc_A Inward-rectifier K+ cha 100.0 2.6E-78 8.8E-83 610.3 25.0 276 143-424 3-334 (343)
3 2qks_A KIR3.1-prokaryotic KIR 100.0 9.3E-63 3.2E-67 493.9 22.4 254 144-421 2-312 (321)
4 1xl4_A Inward rectifier potass 100.0 8.2E-55 2.8E-59 432.9 18.9 242 141-409 5-298 (301)
5 1p7b_A Integral membrane chann 100.0 2E-53 7E-58 428.1 10.5 241 144-412 23-314 (333)
6 2gix_A Inward rectifier potass 100.0 4.8E-42 1.7E-46 324.9 11.4 134 289-422 15-203 (208)
7 2xky_I Inward rectifier potass 100.0 5.7E-41 2E-45 332.3 16.4 125 298-422 68-247 (309)
8 1u4f_A Inward rectifier potass 100.0 9.6E-41 3.3E-45 325.8 11.3 135 289-423 20-209 (270)
9 3agw_A KIR3.2, G protein-activ 100.0 2E-39 6.9E-44 306.9 12.4 130 294-423 22-205 (208)
10 1n9p_A GIRK1, G protein-activa 100.0 3.5E-39 1.2E-43 305.1 10.9 134 287-422 15-202 (207)
11 3sya_A G protein-activated inw 99.8 9.4E-20 3.2E-24 183.7 5.2 73 68-143 3-75 (340)
12 3spc_A Inward-rectifier K+ cha 99.8 1.3E-19 4.4E-24 182.8 5.2 73 67-141 3-75 (343)
13 2k1e_A Water soluble analogue 99.4 1.3E-13 4.3E-18 116.1 5.8 95 187-300 5-99 (103)
14 2a9h_A Voltage-gated potassium 99.4 8.3E-13 2.8E-17 119.4 7.8 86 196-300 58-143 (155)
15 2ih3_C Voltage-gated potassium 99.3 1.1E-12 3.8E-17 113.6 6.5 87 195-300 34-120 (122)
16 3eff_K Voltage-gated potassium 99.3 1.4E-12 4.9E-17 114.8 4.0 88 193-299 11-98 (139)
17 1xl4_A Inward rectifier potass 99.2 4.5E-12 1.5E-16 125.9 5.4 65 68-136 8-72 (301)
18 4h33_A LMO2059 protein; bilaye 99.2 9.9E-12 3.4E-16 109.8 5.3 61 238-300 42-102 (137)
19 2qks_A KIR3.1-prokaryotic KIR 99.2 1.1E-11 3.9E-16 124.0 5.0 60 68-129 2-61 (321)
20 3ouf_A Potassium channel prote 99.1 3.9E-11 1.3E-15 100.1 5.9 61 238-300 31-91 (97)
21 2q67_A Potassium channel prote 99.0 4.4E-10 1.5E-14 96.3 8.4 59 239-299 49-107 (114)
22 1orq_C Potassium channel; volt 99.0 1.8E-10 6.1E-15 107.8 6.0 83 196-297 139-221 (223)
23 3ldc_A Calcium-gated potassium 99.0 3.3E-10 1.1E-14 91.6 6.7 54 239-294 28-81 (82)
24 3pjs_K KCSA, voltage-gated pot 99.0 8.4E-13 2.9E-17 120.0 -11.6 62 237-300 65-126 (166)
25 3vou_A ION transport 2 domain 99.0 9.9E-10 3.4E-14 97.7 7.4 53 238-292 51-103 (148)
26 3beh_A MLL3241 protein; transm 98.9 4.8E-10 1.6E-14 111.6 4.6 106 174-300 115-220 (355)
27 2r9r_B Paddle chimera voltage 98.8 4.4E-09 1.5E-13 111.1 7.0 101 198-317 351-454 (514)
28 4gx0_A TRKA domain protein; me 98.8 4.4E-09 1.5E-13 111.0 6.8 104 190-314 20-134 (565)
29 1p7b_A Integral membrane chann 98.7 3.2E-09 1.1E-13 106.8 2.1 62 69-135 24-85 (333)
30 1lnq_A MTHK channels, potassiu 98.4 1.6E-09 5.5E-14 107.0 -8.8 58 239-298 45-102 (336)
31 3um7_A Potassium channel subfa 98.4 8.8E-08 3E-12 95.4 1.6 58 238-297 114-171 (309)
32 3um7_A Potassium channel subfa 98.3 3.9E-07 1.3E-11 90.8 4.8 62 239-300 224-289 (309)
33 3ukm_A Potassium channel subfa 98.3 6.9E-07 2.4E-11 87.9 6.1 54 238-291 200-258 (280)
34 3ukm_A Potassium channel subfa 98.2 2.5E-07 8.5E-12 91.0 2.1 59 238-298 92-150 (280)
35 3rvy_A ION transport protein; 97.8 2.2E-05 7.6E-10 75.8 5.8 109 173-300 133-245 (285)
36 4dxw_A Navrh, ION transport pr 91.6 0.35 1.2E-05 44.6 7.0 65 235-299 161-228 (229)
37 1n9p_A GIRK1, G protein-activa 90.6 0.079 2.7E-06 49.7 1.5 25 68-92 2-26 (207)
38 3agw_A KIR3.2, G protein-activ 88.8 0.12 4.1E-06 48.6 1.1 27 66-92 2-28 (208)
39 2xky_I Inward rectifier potass 83.2 0.46 1.6E-05 47.1 2.2 24 143-166 40-63 (309)
40 2gix_A Inward rectifier potass 36.3 15 0.00051 34.2 2.0 22 69-90 3-24 (208)
41 1u4f_A Inward rectifier potass 29.9 21 0.00072 34.6 2.0 23 68-90 7-29 (270)
42 3kg2_A Glutamate receptor 2; I 24.9 26 0.0009 37.4 1.8 58 239-299 563-620 (823)
43 2zxe_B Na+,K+-ATPase beta subu 21.0 76 0.0026 31.2 4.1 27 185-211 32-58 (305)
No 1
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=100.00 E-value=3.2e-79 Score=616.31 Aligned_cols=274 Identities=40% Similarity=0.756 Sum_probs=254.7
Q ss_pred ccccceEEeeCCCcceeecCCCCCcchhccHHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy16725 144 NYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPV 223 (434)
Q Consensus 144 ~~~~~Rlv~K~G~~nV~~~~v~~~~~~~~yl~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~~~ 223 (434)
|++++|+|+|||+|||++.|++.+.+ |++|+||++++++|++++++++++|+++|++||++||++++.+||+...+
T Consensus 3 ~~~~~R~v~k~G~~nv~~~~~~~~~~---~~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~- 78 (340)
T 3sya_A 3 KRKIQRYVRKDGKCNVHHGNVRETYR---YLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIE- 78 (340)
T ss_dssp ---CCCSBCTTSCBCCCCCCCCCTHH---HHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSS-
T ss_pred CcccceEEecCCcEEEEEcCcccchH---HHHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-
Confidence 56677999999999999998876666 99999999999999999999999999999999999999999899986321
Q ss_pred CCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccc
Q psy16725 224 RDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQN 303 (434)
Q Consensus 224 ~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~Ra~t 303 (434)
..+++||+.++.+|.+|||||++|+|||||||++|+++||.|++++++|+++|++++|+++|++|+|++||++|++|
T Consensus 79 ---~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra~t 155 (340)
T 3sya_A 79 ---DPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAET 155 (340)
T ss_dssp ---CSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGG
T ss_pred ---cccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCce
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC---------------
Q psy16725 304 LLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG--------------- 368 (434)
Q Consensus 304 I~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~--------------- 368 (434)
|+||++|||+++||++|||||+||+|+++|+||+||+++++.++|+|||.+|++|.+++++.|.+
T Consensus 156 i~FS~~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~~~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~ 235 (340)
T 3sya_A 156 LVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHE 235 (340)
T ss_dssp EEECSCEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEECCEECTTSCEETTCEEEECSSTTTTTTSCCCSSCEEEEEE
T ss_pred EEecceEEEeccCCeEEEEEEEecCCCCeEEEEEEEEEEEEEEecCCCceEeeEEeeeceeccCCCCcceeeccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988876532211
Q ss_pred ---------------------------------------ceeecCCCcccCCeecccEEecCCeEEEeccCCCceeeecC
Q psy16725 369 ---------------------------------------GSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNM 409 (434)
Q Consensus 369 ---------------------------------------RtSY~~~EI~WghrF~~~i~~~~g~~~VD~s~F~~t~~v~~ 409 (434)
||||+++||+|||||+||++.++|+|.|||++||+++|++|
T Consensus 236 Ide~SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~~~~g~~~vD~s~F~~~~~v~~ 315 (340)
T 3sya_A 236 INQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDGFYEVDYNSFHETYETST 315 (340)
T ss_dssp CCTTSTTTTCCTTTGGGCCCEEEEEEEEEESSSCCEEEEEEEEEGGGEEETEEECCCEEEETTEEEECGGGSSCEEECCC
T ss_pred CCCCCCccccChhHHhhCCeEEEEEEEEEeccccceEEEEEEEcHHHEecCCEeceeEEcCCCeEEEEhHHcCcceEcCC
Confidence 99999999999999999999888999999999999999999
Q ss_pred CCCChHhHHHHhhhH
Q psy16725 410 PLCSAYQYEKLTRDA 424 (434)
Q Consensus 410 P~~sa~~l~~~~~~~ 424 (434)
|.|||+|++|.+++.
T Consensus 316 p~csa~~~~~~~~~~ 330 (340)
T 3sya_A 316 PSLSAKELAELANRA 330 (340)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhc
Confidence 999999999988643
No 2
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=100.00 E-value=2.6e-78 Score=610.35 Aligned_cols=276 Identities=42% Similarity=0.778 Sum_probs=250.6
Q ss_pred CccccceEEeeCCCcceeecCCCCC-cchhccHHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy16725 143 NNYTLRRLVSKTGSCRVSKLNSSQH-LPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTS 221 (434)
Q Consensus 143 ~~~~~~Rlv~K~G~~nV~~~~v~~~-~~~~~yl~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~ 221 (434)
++++++|+++|||+|||++.|++.+ .+ |++|+||++++++|++++++++++|+++|++||++||++++.|||+...
T Consensus 3 ~~~~~~R~v~k~G~~nv~~~~~~~~~~~---~l~Dif~tlv~l~Wr~~ll~f~~~y~~swl~Fally~~ia~~~gdl~~~ 79 (343)
T 3spc_A 3 RRKCRNRFVKKNGQCNVEFTNMDDKPQR---YIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENP 79 (343)
T ss_dssp ---CCCCSBCTTSCBCCCCCSCCCCC--------CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCT
T ss_pred CCcccceeEecCCcEEEEecCCCccchh---HHHHHHHHHeeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 4677889999999999999998775 45 9999999999999999999999999999999999999999989998643
Q ss_pred CCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccc
Q psy16725 222 PVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRS 301 (434)
Q Consensus 222 ~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~Ra 301 (434)
+ +.++++||+.++.+|.+|||||++|+|||||||++|++.||.+++++++|+++|++++|+++|++|+|++||++|+
T Consensus 80 ~---~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r~ 156 (343)
T 3spc_A 80 G---GDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRA 156 (343)
T ss_dssp T---CCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCC
T ss_pred c---ccccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 2 2257899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC-------------
Q psy16725 302 QNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG------------- 368 (434)
Q Consensus 302 ~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~------------- 368 (434)
+||+||++|||+++||++|||||+||+|+++|+||+||+++++.++|+|||.+|++|.++++..|.+
T Consensus 157 ~ti~FS~~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~r~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~ 236 (343)
T 3spc_A 157 QTLLFSHNAVVAMRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITIL 236 (343)
T ss_dssp CCEEECSCEEEEEETTEEEEEEEEEESSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEEECSSGGGTTTBCCCSSCEEEE
T ss_pred CcEEeccceEEecCCCcEEEEEEEecCCCCeEEEEEEEEEEEEEEEcCCCcEEeeEEEEeeecccCCCCcceeeccEEEE
Confidence 9999999999999999999999999999999999999999999999999999999988776432211
Q ss_pred -----------------------------------------ceeecCCCcccCCeecccEEecCCeEEEeccCCCceeee
Q psy16725 369 -----------------------------------------GSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLV 407 (434)
Q Consensus 369 -----------------------------------------RtSY~~~EI~WghrF~~~i~~~~g~~~VD~s~F~~t~~v 407 (434)
||||+++||+|||||+||++.++|+|.|||++||+++|+
T Consensus 237 H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~~~~g~~~vD~s~F~~~~~v 316 (343)
T 3spc_A 237 HEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLFEEKNQYKVDYSHFHKTYEV 316 (343)
T ss_dssp EECCTTSTTTTCCHHHHTTCCCEEEEEEEEEETTTCSEEEEEEEEEGGGEEETEEECCCEEEETTEEEECGGGTTCEEEC
T ss_pred EeCCCCCCcccCCHHHHhhCCeEEEEEEEEEecccCcEEEEEEEEchHHeecCCEeeeeEEcCCCeEEEEhHHcCCcccC
Confidence 999999999999999999998889999999999999999
Q ss_pred c-CCCCChHhHHHHhhhH
Q psy16725 408 N-MPLCSAYQYEKLTRDA 424 (434)
Q Consensus 408 ~-~P~~sa~~l~~~~~~~ 424 (434)
+ ||.|||+|++|.+...
T Consensus 317 ~~tp~csa~~~~~~~~~~ 334 (343)
T 3spc_A 317 PSTPRCSAKDLVENKFLL 334 (343)
T ss_dssp TTSCCSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHhhhhhhc
Confidence 5 9999999999987533
No 3
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=100.00 E-value=9.3e-63 Score=493.93 Aligned_cols=254 Identities=34% Similarity=0.614 Sum_probs=226.7
Q ss_pred ccccceEEeeCCCcceeecCCCC-CcchhccHHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16725 144 NYTLRRLVSKTGSCRVSKLNSSQ-HLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSP 222 (434)
Q Consensus 144 ~~~~~Rlv~K~G~~nV~~~~v~~-~~~~~~yl~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~~ 222 (434)
+++++|+++|+|+|||++.|++. +.+ |++|+|+++++++|+.++++++++|+++|++|| |++. +||
T Consensus 2 ~~~~~R~~~k~G~~nv~~~~~~~~~~r---~l~dl~~tl~~~~~~~~ll~f~~~~~~~~~~fa--~~~~---eg~----- 68 (321)
T 2qks_A 2 SKKRQRFVDKNGRCNVQHGNLGSETSR---YLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFA--TLYM---LGS----- 68 (321)
T ss_dssp -CCCCCSBCTTSCBCCCCCC----------CCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HHHH---TSS-----
T ss_pred CCCccceeeeCCcEEEEEecccchhhH---HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH--HHHH---cCC-----
Confidence 45678999999999999999844 556 899999999999999999999999999999999 4322 343
Q ss_pred CCCCCCCCCCcccCcc--cchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 223 VRDPFNDTLPCVTGVD--DFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 223 ~~~~~~~~~pCi~~~~--~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
.|..+.. +|.+|||||++|+|||||||++|.+ +.+++++++++++|+++.|+++|++++++++|++|
T Consensus 69 ---------~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t--~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 69 ---------APIANQFPAGFGGAFFFSVETLATVGYGDMHPQT--VYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp ---------SCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred ---------ccccCcCCcchhheeeeeeEEeccccCCCcCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2555666 9999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ccceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC------------
Q psy16725 301 SQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG------------ 368 (434)
Q Consensus 301 a~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~------------ 368 (434)
+++++||++||||++||++|||||++|+|+++|+||+||+++++.++|+|||.++++|.+++++.|++
T Consensus 138 ~~~i~fS~~avI~~~~g~~~L~fRv~n~r~~~li~a~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv 217 (321)
T 2qks_A 138 AETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTI 217 (321)
T ss_dssp GGTEEECSCEEEEEETTEEEEEEEEEECSCCCEEEEEEEEEEEEEEECTTCCEEEEEEEEECSSTTTTTTBCCCSSCEEE
T ss_pred hhhhhcCCceEEecCCCceEEEEEecccccCeeeeeEEEEEEEEEEecCCCcEEEeEEeeeecccCCCCCceEEEccEEE
Confidence 99999999999999999999999999999999999999999999999999999998888776533211
Q ss_pred ------------------------------------------ceeecCCCcccCCeecccEEecCCeEEEeccCCCceee
Q psy16725 369 ------------------------------------------GSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVL 406 (434)
Q Consensus 369 ------------------------------------------RtSY~~~EI~WghrF~~~i~~~~g~~~VD~s~F~~t~~ 406 (434)
|+||+++||+|||||+||++.++|.|.|||++||+++|
T Consensus 218 ~H~Id~~SPL~~~~~~~L~~~~~eivV~l~G~~e~t~~t~~ar~sY~~~eI~wg~rF~~i~~~~~~~~~vD~~~f~~~~~ 297 (321)
T 2qks_A 218 CHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATFE 297 (321)
T ss_dssp EEECSTTSTTTTCCHHHHTTCCCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETEEECCCEEECSSSEEECGGGSSCEEE
T ss_pred EEECCCCCCccccCHhHHhcCCeEEEEEEEEEehhcCcEEEEEEEEChHHeecCCEeceeeEEcCCcEEEehHHhCCcee
Confidence 99999999999999999999988779999999999999
Q ss_pred ecCCCCChHhHHHHh
Q psy16725 407 VNMPLCSAYQYEKLT 421 (434)
Q Consensus 407 v~~P~~sa~~l~~~~ 421 (434)
+++|.|||+||+|.+
T Consensus 298 ~~~p~~sa~~~~~~~ 312 (321)
T 2qks_A 298 VPTPPYSVKEQEEML 312 (321)
T ss_dssp CCCCSSCHHHHHCC-
T ss_pred cCCCCcCHHHHHhhc
Confidence 999999999999866
No 4
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=100.00 E-value=8.2e-55 Score=432.91 Aligned_cols=242 Identities=24% Similarity=0.451 Sum_probs=209.1
Q ss_pred CCCccccceEEeeCCCcceeecCCCCCcchhccHHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy16725 141 SSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKT 220 (434)
Q Consensus 141 ~~~~~~~~Rlv~K~G~~nV~~~~v~~~~~~~~yl~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~ 220 (434)
.+.+++++|+++|||+|||.+.+++.. . |++|+|+++++++|++++++++++|+++|++||++|++++ +...
T Consensus 5 ~~~~~~~~r~~~k~G~~nv~~~~~~~~-~---~l~d~~~~~l~~~~~~ll~~~~~~~~~~~l~fa~ly~~~~---~~~~- 76 (301)
T 1xl4_A 5 MKPPARKPRILNSDGSSNITRLGLEKR-G---WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACG---DVIE- 76 (301)
T ss_dssp ------CCCSBCTTSCBCCEESSCCCC-C---SSCSSTTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTC---SCST-
T ss_pred cccccccceeEecCCcEEEEECCcchh-H---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccC-
Confidence 344567789999999999999887642 2 6799999999999999999999999999999999988763 1111
Q ss_pred CCCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 221 SPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 221 ~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
+ ....+|.+|||||++|+|||||||++| .|+.+++++++|+++|+++.|+++|+++++++||++|
T Consensus 77 --------~-----~~~~s~~~a~yfs~vT~tTvGYGDi~P--~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~~r 141 (301)
T 1xl4_A 77 --------N-----ARPGSFTDAFFFSVQTMATIGYGKLIP--IGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAG 141 (301)
T ss_dssp --------T-----SCTTCHHHHHHHHHHHHTTCCCSSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred --------C-----CCcCCHHHHHHHhhhheeccCCCCCcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 1 235789999999999999999999998 4589999999999999999999999999999999998
Q ss_pred ccceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeee-----------------
Q psy16725 301 SQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNI----------------- 363 (434)
Q Consensus 301 a~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~----------------- 363 (434)
+.||++||||++||++|||||++|+|+++|+||+||+++++.++|+|||.+ +.+.++++
T Consensus 142 ---~~fs~~~vI~~~~g~~~l~~R~~n~r~~~li~a~vr~~l~~~~~t~eGe~~-~~~~~L~l~~~~~~~l~~p~~v~H~ 217 (301)
T 1xl4_A 142 ---VLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVF-RRFHDLTLTRSRSPIFSLSWTVMHP 217 (301)
T ss_dssp ---EEECSCEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTSCEE-EEEEECCCSCCEEEEECSEEEEEEE
T ss_pred ---hccCCeEEEecCCCcceeeeeccccccceEEccEEEEEEEEeeEcCCCcEE-EEEeccccccCCeEEEEeeEEEEEe
Confidence 999999999999999999999999999999999999999999999999986 44444432
Q ss_pred ---------------------------eecCC-------ceeecCCCcccCCeecccEEec-CCeEEEeccCCCceeeec
Q psy16725 364 ---------------------------TVDDG-------GSSYLPSEIQWGHRFMPMFIKR-DCKYYVDYARFQNTVLVN 408 (434)
Q Consensus 364 ---------------------------~~d~~-------RtSY~~~EI~WghrF~~~i~~~-~g~~~VD~s~F~~t~~v~ 408 (434)
+.|++ |+||.++||+|||||+||+..+ +|+|.|||++||+|+|.+
T Consensus 218 Id~~SPL~~~s~~~L~~~~~eivV~l~G~de~t~~~~~ar~sY~~~eI~wg~rF~~~~~~~~~g~~~vD~~~f~~~~~~~ 297 (301)
T 1xl4_A 218 IDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTLPDGRRALDLGKFHEIAQHH 297 (301)
T ss_dssp CCTTCTTTTCCHHHHHHHTCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETCEECCCEEECTTSCEEECTTSTTCEECCC
T ss_pred cCCCCCcccCCHhHHhcCCeEEEEEEEEEecccCcEEEEEEeecHHHeeeCCEecceeeECCCCcEEEEhHHhcCccccc
Confidence 11221 9999999999999999999986 699999999999999975
Q ss_pred C
Q psy16725 409 M 409 (434)
Q Consensus 409 ~ 409 (434)
.
T Consensus 298 ~ 298 (301)
T 1xl4_A 298 H 298 (301)
T ss_dssp C
T ss_pred c
Confidence 4
No 5
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=100.00 E-value=2e-53 Score=428.10 Aligned_cols=241 Identities=22% Similarity=0.383 Sum_probs=180.4
Q ss_pred ccccceEEeeCCCcceeecCCCCCcchhccHHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy16725 144 NYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPV 223 (434)
Q Consensus 144 ~~~~~Rlv~K~G~~nV~~~~v~~~~~~~~yl~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~~~ 223 (434)
+++++|.+.|+|+|||.+. +.+.+ ++.|+|+++++++|++++++++++|+++|++||++|++. ++..
T Consensus 23 ~~~~~~~~~~~G~~nv~~~--~~~~~---~~~d~~~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e----~~~~---- 89 (333)
T 1p7b_A 23 KPPRGGRRIWSGTREVIAY--GMPAS---VWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLG----DAPI---- 89 (333)
T ss_dssp -------------CCSSCE--ECCCC---HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSS----SSCC----
T ss_pred cccceeeEecCCceEEEEc--cccch---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----cccc----
Confidence 4556677889999999754 33445 899999999999999999999999999999999998764 2210
Q ss_pred CCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccc
Q psy16725 224 RDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQN 303 (434)
Q Consensus 224 ~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~Ra~t 303 (434)
.+ ....+|.+|||||++|+|||||||++|.+ +.+++++++++++|++++|+++|++++++++|++|
T Consensus 90 ----~~-----~~~~s~~~a~yfs~vT~tTVGYGDi~P~t--~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r--- 155 (333)
T 1p7b_A 90 ----AN-----QSPPGFVGAFFFSVETLATVGYGDMHPQT--VYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK--- 155 (333)
T ss_dssp ----CC-----SSSSSTHHHHHHHTTTTTTCCCSCCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC---
T ss_pred ----cC-----CCCCcHHHhHhhhheeeeecCCCCCcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 01 12468999999999999999999999864 78999999999999999999999999999999999
Q ss_pred eeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeee--------------------
Q psy16725 304 LLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNI-------------------- 363 (434)
Q Consensus 304 I~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~-------------------- 363 (434)
+.||++||||++||++|||||++|+|++++++++||++++++++|+|||.++.. .++++
T Consensus 156 ~~fs~~~VI~~~~g~~~L~fRv~n~r~~~li~a~vr~~li~~~~t~eGe~~~~~-~~l~l~~~~~~~l~~~~tv~H~Id~ 234 (333)
T 1p7b_A 156 IMFARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKI-HDLKLVRNEHPIFLLGWNMMHVIDE 234 (333)
T ss_dssp CEECSCEEEEECSSSEEEEEEEECCSSCCCCEEEEEEECC----------CCEE-CCSGGGTTCSCCCCSSEEEEEECST
T ss_pred HHhCCCEEEcCCCCcceEEEEecccccceEEeeEEEEEEEeeeecCCCcEEeee-eecccccCCCeeEeeeEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999986421 12211
Q ss_pred ------------------------eecCC-------ceeecCCCcccCCeecccEEecCCeEEEeccCCCceeeecCCCC
Q psy16725 364 ------------------------TVDDG-------GSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLC 412 (434)
Q Consensus 364 ------------------------~~d~~-------RtSY~~~EI~WghrF~~~i~~~~g~~~VD~s~F~~t~~v~~P~~ 412 (434)
+.|++ |+||+++||+|||||+||++.++|+|.|||++||+++|+++|.|
T Consensus 235 ~SPL~~~s~~~L~~~~~eivV~l~G~de~t~~t~qar~sY~~~eI~wg~rF~~i~~~~~g~~~vD~~~f~~~~~~~~~~~ 314 (333)
T 1p7b_A 235 SSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLMSDVDGMTHIDYTRFNDTEPVEPPGA 314 (333)
T ss_dssp TSTTSSCCHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETCCBCCCC------CCCCCTTSSCBCCC-----
T ss_pred CCCccccCHhHHhcCCEEEEEEEEEEecccCceEEEEEEechHHeeeCCEechheEeCCCcEEEEhHHcCCceecCCccc
Confidence 12222 99999999999999999999888999999999999999999998
No 6
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=100.00 E-value=4.8e-42 Score=324.94 Aligned_cols=134 Identities=43% Similarity=0.741 Sum_probs=124.4
Q ss_pred HHHHHhhCccccccceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC
Q psy16725 289 IIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG 368 (434)
Q Consensus 289 lIfaK~SRP~~Ra~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~ 368 (434)
++|||+|||++|++||+||++|||+++||++||||||||+|+++|+||+||++|++.++|+|||.+++++.+++++.|.+
T Consensus 15 ~vfakisrP~kRa~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~~~~~~L~l~~d~~ 94 (208)
T 2gix_A 15 CNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG 94 (208)
T ss_dssp BCEEEECCCCSCSCSEEECSCEEEEEETTEEEEEEEEEECCSSCEEEEEEEEEEEEEEECTTCCEEEEEEEEECSSGGGT
T ss_pred EEEEEecCCcccCCcEEecCeEEEEEeCCEEEEEEEEecCccCeEEeeEEEEEEEEEEeCCCCcEEEEEEEEEEeccCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999998888776533211
Q ss_pred ------------------------------------------------------ceeecCCCcccCCeecccEEecCCeE
Q psy16725 369 ------------------------------------------------------GSSYLPSEIQWGHRFMPMFIKRDCKY 394 (434)
Q Consensus 369 ------------------------------------------------------RtSY~~~EI~WghrF~~~i~~~~g~~ 394 (434)
|+||+++||+|||||+||+..++|+|
T Consensus 95 ~~~~fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~dest~qt~qaR~SY~~~eIlWg~rF~~iv~~~~g~~ 174 (208)
T 2gix_A 95 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLFEEKHYY 174 (208)
T ss_dssp TTEECCSSCEEEEEECCTTSTTTTCCHHHHHTCCCEEEEEEEEEETTTCCEEEEEEEEEGGGEEETEEECCCEEECSSSE
T ss_pred CCceEEeccEEEEEECCCCCCccccChhHHhcCCEEEEEEEEEEecccCcEEEEEEEEchHHEEeCCEeceeEEcCCCeE
Confidence 99999999999999999999888999
Q ss_pred EEeccCCCceeeec-CCCCChHhHHHHhh
Q psy16725 395 YVDYARFQNTVLVN-MPLCSAYQYEKLTR 422 (434)
Q Consensus 395 ~VD~s~F~~t~~v~-~P~~sa~~l~~~~~ 422 (434)
.|||++||+++|++ ||.|||+||+|.+.
T Consensus 175 ~VD~s~F~~~~~v~~tp~csa~~l~~~~~ 203 (208)
T 2gix_A 175 KVDYSRFHKTYEVPNTPLCSARDLAEKKY 203 (208)
T ss_dssp EEEGGGTTCEEECTTSCCSCHHHHHHHHH
T ss_pred EEEhHHcCcceEcCCCCCCCHHHHhhccc
Confidence 99999999999996 99999999999764
No 7
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus}
Probab=100.00 E-value=5.7e-41 Score=332.26 Aligned_cols=125 Identities=46% Similarity=0.806 Sum_probs=116.1
Q ss_pred cccccceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC---------
Q psy16725 298 KKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG--------- 368 (434)
Q Consensus 298 ~~Ra~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~--------- 368 (434)
++||+||+||++|||+++||++||||||||+|+++|++|+||++|++.++|+|||.+++++.+++++.|.+
T Consensus 68 r~RA~TI~FS~~AVI~~rDG~~cLMFRVaN~R~s~Iiea~Vr~~Lir~~~T~EGe~i~~~~~dL~l~~d~~~~~~fL~~P 147 (309)
T 2xky_I 68 GGRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSP 147 (309)
T ss_pred CCCcceEEEeccEEEEEECCEEEEEEEEecCcCCeEEccEEEEEEEEEEEcCCCcEEEeeeeeeecccCCCCcceeEecc
Confidence 77888999999999999999999999999999999999999999999999999999998877776543311
Q ss_pred ---------------------------------------------ceeecCCCcccCCeecccEEecCCeEEEeccCCCc
Q psy16725 369 ---------------------------------------------GSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQN 403 (434)
Q Consensus 369 ---------------------------------------------RtSY~~~EI~WghrF~~~i~~~~g~~~VD~s~F~~ 403 (434)
|+||+++||+|||||+||+..++|+|.|||++||+
T Consensus 148 ~tV~H~IDe~SPLy~~t~e~L~~~dfEIVV~LeG~dEsTgqtvqARtSY~~~EIlWGhRF~piv~~~~G~y~VD~s~Fh~ 227 (309)
T 2xky_I 148 ITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLFEEKHYYKVDYSRFHK 227 (309)
T ss_pred EEEEEECCCCCCccccChhhHhcCCeEEEEEEEEEecccCceEEEEEEEchHHeeeCCEeceeEEcCCCeEEEEhHHcCc
Confidence 99999999999999999999888999999999999
Q ss_pred eeeec-CCCCChHhHHHHhh
Q psy16725 404 TVLVN-MPLCSAYQYEKLTR 422 (434)
Q Consensus 404 t~~v~-~P~~sa~~l~~~~~ 422 (434)
|+|++ ||+|||+||+|.+.
T Consensus 228 t~pv~~tP~cSa~~l~e~~~ 247 (309)
T 2xky_I 228 TYEVPNTPLCSARDLAEKKY 247 (309)
T ss_pred ceecCCCCCCCHHHHhhhhc
Confidence 99998 99999999999875
No 8
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus}
Probab=100.00 E-value=9.6e-41 Score=325.78 Aligned_cols=135 Identities=44% Similarity=0.734 Sum_probs=124.4
Q ss_pred HHHHHhhCccccccceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC
Q psy16725 289 IIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG 368 (434)
Q Consensus 289 lIfaK~SRP~~Ra~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~ 368 (434)
++|||||||++|++||+||++|||+++||++||||||||+|+++|++|+||++|++.++|.|||.+++++.++++..|.+
T Consensus 20 ~vFaKiSrPkkRa~tI~FS~~AVI~~rdG~~~LMfRVaN~R~s~Iiea~Vrl~Lir~~~T~EGe~~~~~~~dL~l~~d~~ 99 (270)
T 1u4f_A 20 CNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG 99 (270)
T ss_dssp BCEEEESCCCTTTCSEEECSSEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTCCEEEEEEEECCSSTTTT
T ss_pred EEEEEccCCcCCCceEEecCcEEEEEeCCEEEEEEEEecCCCCeEEeeEEEEEEEEEEEcCCCcEEEeEEEEEEeccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999998887776543221
Q ss_pred ------------------------------------------------------ceeecCCCcccCCeecccEEecCCeE
Q psy16725 369 ------------------------------------------------------GSSYLPSEIQWGHRFMPMFIKRDCKY 394 (434)
Q Consensus 369 ------------------------------------------------------RtSY~~~EI~WghrF~~~i~~~~g~~ 394 (434)
|+||+++||+|||||+||+..++|+|
T Consensus 100 ~~~~fL~~P~tV~H~IDe~SPLy~~t~e~L~~~d~EIvV~LeG~dEsTgqtvqARtSY~~~EIlWghRF~~iv~~~~G~y 179 (270)
T 1u4f_A 100 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLFEEKHYY 179 (270)
T ss_dssp TTEECCSSCEEEEEECCTTSTTTTCCHHHHHHCCCEEEEEEEEEETTCSCEEEEEEEEEGGGEEETEEECCCEEECSSSE
T ss_pred CCceEEeccEEEEEECCCCCCccccChhhHhcCCeEEEEEEEEEecccCcEEEEEEEEchHHEEeCCEeceeEEcCCCeE
Confidence 99999999999999999999888999
Q ss_pred EEeccCCCceeeec-CCCCChHhHHHHhhh
Q psy16725 395 YVDYARFQNTVLVN-MPLCSAYQYEKLTRD 423 (434)
Q Consensus 395 ~VD~s~F~~t~~v~-~P~~sa~~l~~~~~~ 423 (434)
.|||++||+|+|++ ||.|||+||+|.+..
T Consensus 180 ~VD~s~Fh~t~pv~~tP~csa~~l~e~~~~ 209 (270)
T 1u4f_A 180 KVDYSRFHKTYEVPNTPLCSARDLAEKKYI 209 (270)
T ss_dssp EEEGGGSSCEEECTTSCCSCHHHHHHHC--
T ss_pred EEEhHHcCcceecCCCCCCCHHHHhhhhcc
Confidence 99999999999996 999999999997643
No 9
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Probab=100.00 E-value=2e-39 Score=306.95 Aligned_cols=130 Identities=40% Similarity=0.639 Sum_probs=117.4
Q ss_pred hhCccccccceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC-----
Q psy16725 294 LAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG----- 368 (434)
Q Consensus 294 ~SRP~~Ra~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~----- 368 (434)
.++|++||+||+||++|||+++||++||||||||+|+++|+||+||++|++.++|+|||.+++.|.+++++.|.+
T Consensus 22 ~~~pk~Ra~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~~~~~t~EGe~~~~~~~dL~l~~d~~~~~~f 101 (208)
T 3agw_A 22 GNVREKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLF 101 (208)
T ss_dssp TCCC---CCCCCBCSCEEEEEETTEEEEEEEECCCTTCCEEEEEEEEEEECCEECTTCCEETTCEEECCSSTTTTTTBCC
T ss_pred eccCCcccccEEecceEEEEecCCeEEEEEEEecCccCeEEeeEEEEEEEEEEECCCCcEEEEEEEeeecccCCCCCceE
Confidence 456889999999999999999999999999999999999999999999999999999999988877777632211
Q ss_pred -------------------------------------------------ceeecCCCcccCCeecccEEecCCeEEEecc
Q psy16725 369 -------------------------------------------------GSSYLPSEIQWGHRFMPMFIKRDCKYYVDYA 399 (434)
Q Consensus 369 -------------------------------------------------RtSY~~~EI~WghrF~~~i~~~~g~~~VD~s 399 (434)
|+||+++||+|||||+||++.++|+|.|||+
T Consensus 102 l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~dest~~t~qaR~SY~~~eIlWg~rF~~iv~~~~G~~~VD~s 181 (208)
T 3agw_A 102 LVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDGFYEVDYN 181 (208)
T ss_dssp CSSCEEEEEECCTTSTTTTCCTTTGGGCCCEEEEEEEEEETTTCSEEEEEEEEEGGGEEETEEECCCEEEETTEEEECGG
T ss_pred EeccEEEEEECCCCCCccccCHhHHhcCCeEEEEEEEEEehhhCcEEEEEEEEChHHEEeCCEeeeeEEecCCeEEEEhH
Confidence 9999999999999999999998899999999
Q ss_pred CCCceeeecCCCCChHhHHHHhhh
Q psy16725 400 RFQNTVLVNMPLCSAYQYEKLTRD 423 (434)
Q Consensus 400 ~F~~t~~v~~P~~sa~~l~~~~~~ 423 (434)
+||+++|+++|.|||+||+|.++.
T Consensus 182 ~F~~~~pv~~p~~sa~~l~~~~~~ 205 (208)
T 3agw_A 182 SFHETYETSTPSLSAKELAELANR 205 (208)
T ss_dssp GTTCEEECCCCCSCHHHHHHHHTC
T ss_pred HcCcceecCCCcCCHHHHHHHHhh
Confidence 999999999999999999998864
No 10
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A
Probab=100.00 E-value=3.5e-39 Score=305.14 Aligned_cols=134 Identities=34% Similarity=0.647 Sum_probs=116.6
Q ss_pred HHHHHHHhhCccccccceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeec
Q psy16725 287 GGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVD 366 (434)
Q Consensus 287 ~GlIfaK~SRP~~Ra~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d 366 (434)
.|++|+|++| +||+||+||++|||+++||++||||||||+|+++|+||+||++|++.++|+|||.+++++.+++++.|
T Consensus 15 ~~v~~~rfsk--~Ra~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~~~~~~L~l~~d 92 (207)
T 1n9p_A 15 CNVQHGNLGS--ERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFS 92 (207)
T ss_dssp BCEEC-------CCSCCSSBCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEECCSSTT
T ss_pred eeeEEeeecC--CccceEEEeCcEEEEEECCEEEEEEEEecCCCCeEEccEEEEEEEEEEEcCCCcEEEEEEEeeEeecc
Confidence 4778899975 55568999999999999999999999999999999999999999999999999999988887754221
Q ss_pred -----------------------------------------------CC-------ceeecCCCcccCCeecccEEecCC
Q psy16725 367 -----------------------------------------------DG-------GSSYLPSEIQWGHRFMPMFIKRDC 392 (434)
Q Consensus 367 -----------------------------------------------~~-------RtSY~~~EI~WghrF~~~i~~~~g 392 (434)
++ ||||+++||+|||||+||++.++|
T Consensus 93 ~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eIlWg~rF~~iv~~~~~ 172 (207)
T 1n9p_A 93 TGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEEG 172 (207)
T ss_dssp TTTTEEECSSCEEEEEECCTTSTTTTCCTTGGGTCCCEEEEEEEEEETTTCCBCCEEEEEEGGGEEETEEECCCEEESSS
T ss_pred CCCCceEEEccEEEEEeCCCCCCccccCHhHHhcCCeEEEEEEEEEehhhCcEEEEEEEEChHHeeeCCEeeeeEEEcCC
Confidence 11 999999999999999999999887
Q ss_pred eEEEeccCCCceeeecCCCCChHhHHHHhh
Q psy16725 393 KYYVDYARFQNTVLVNMPLCSAYQYEKLTR 422 (434)
Q Consensus 393 ~~~VD~s~F~~t~~v~~P~~sa~~l~~~~~ 422 (434)
.|.|||++||+++|+++|.|||+||+|...
T Consensus 173 ~~~VD~s~F~~~~~v~~p~~sa~~l~e~~~ 202 (207)
T 1n9p_A 173 FFKVDYSQFHATFEVPTPPYSVKEQEEMLL 202 (207)
T ss_dssp CEEECGGGSSCEEECCCCCSCHHHHHHHHH
T ss_pred eEEEEHHHhCCceEcCCCccCHHHHhhhhc
Confidence 799999999999999999999999999653
No 11
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.77 E-value=9.4e-20 Score=183.69 Aligned_cols=73 Identities=32% Similarity=0.747 Sum_probs=64.4
Q ss_pred ccccccccccCCccceeecCCCCcccchhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy16725 68 NYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSN 143 (434)
Q Consensus 68 ~~~~~R~v~K~G~cnv~~~~~~~~~~~~ryl~D~fttlvd~~Wr~~l~~F~~~~~~sW~~F~~~~~~ia~~~~~~~ 143 (434)
|++|+|+|.|||+|||.++|+++. +||++|+||||||++|||++++|+++|+++|++||++||+||+.|++..
T Consensus 3 ~~~~~R~v~k~G~~nv~~~~~~~~---~~~~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~ 75 (340)
T 3sya_A 3 KRKIQRYVRKDGKCNVHHGNVRET---YRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMD 75 (340)
T ss_dssp ---CCCSBCTTSCBCCCCCCCCCT---HHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CcccceEEecCCcEEEEEcCcccc---hHHHHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 456789999999999999999432 3699999999999999999999999999999999999999999998543
No 12
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=99.77 E-value=1.3e-19 Score=182.85 Aligned_cols=73 Identities=32% Similarity=0.683 Sum_probs=61.9
Q ss_pred cccccccccccCCccceeecCCCCcccchhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy16725 67 NNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTS 141 (434)
Q Consensus 67 ~~~~~~R~v~K~G~cnv~~~~~~~~~~~~ryl~D~fttlvd~~Wr~~l~~F~~~~~~sW~~F~~~~~~ia~~~~~ 141 (434)
++++|+|+|+|||+|||.++|++++.. ||++|+||||||++|||++++|+++|+++|++||++||++|+.|++
T Consensus 3 ~~~~~~R~v~k~G~~nv~~~~~~~~~~--~~l~Dif~tlv~l~Wr~~ll~f~~~y~~swl~Fally~~ia~~~gd 75 (343)
T 3spc_A 3 RRKCRNRFVKKNGQCNVEFTNMDDKPQ--RYIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGD 75 (343)
T ss_dssp ---CCCCSBCTTSCBCCCCCSCCCCC-------CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred CCcccceeEecCCcEEEEecCCCccch--hHHHHHHHHHeeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 466788999999999999999988653 6899999999999999999999999999999999999999998873
No 13
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.42 E-value=1.3e-13 Score=116.08 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=76.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCCh
Q psy16725 187 RWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCP 266 (434)
Q Consensus 187 ~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp 266 (434)
.+-++..++..++..+++|.+|+.+... + . + ....++.+|||||++|+|||||||++|.+ +
T Consensus 5 ~r~~l~~~~~~~~~~~~~a~~~~~~E~~--~-~---------~-----~~~~~~~~a~y~~~~T~tTvGyGDi~P~t--~ 65 (103)
T 2k1e_A 5 EREAQKAEEELQKVLEEASKKAVEAERG--A-P---------G-----AALISYPDAIWWSVETATTVGYGDRYPVT--E 65 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--S-T---------T-----CCCCCGGGTTTTTTGGGGCCSCCSSCCCS--S
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccC--C-C---------C-----cccccHHHHHHHHHHHHhcccCCCCCCCC--h
Confidence 3344445556667778889999887521 0 0 0 23468999999999999999999999976 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 267 EAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 267 ~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
.+++++++++++|+++.++.+|.+.+.+.+..+|
T Consensus 66 ~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 66 EGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp SCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999887665
No 14
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.36 E-value=8.3e-13 Score=119.37 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHH
Q psy16725 196 SFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQ 275 (434)
Q Consensus 196 ~yll~~llFA~lY~~i~~~~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq 275 (434)
..++.++++|.+||.+... + ++ ++..++.+|||||++|+|||||||++|.+ +.++++++++
T Consensus 58 ~~~~~i~~~a~~~~~~E~~--~----------~~-----~~~~s~~~a~y~s~vTltTVGYGDi~P~t--~~gr~~~~~~ 118 (155)
T 2a9h_A 58 LLVIVLLAGSYLAVLAERG--A----------PG-----AALISYPDALWWSVETATTVGYGDLYPVT--LWGRCVAVVV 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S----------SC-----SSTTSHHHHHHHHHHHHTTCCCSSSCCCS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--C----------CC-----CccCcccceeheeeeeeecccCCCCCCCC--hhHHHHHHHH
Confidence 3445567788888877421 0 01 24578999999999999999999999987 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 276 SIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 276 ~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
+++|+++.|+.+|.+.+.+++..++
T Consensus 119 ~l~Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 119 MVAGITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 15
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.33 E-value=1.1e-12 Score=113.63 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHH
Q psy16725 195 LSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSI 274 (434)
Q Consensus 195 ~~yll~~llFA~lY~~i~~~~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~v 274 (434)
...++.++++|.++|.+.. +-. + +...++.+|+|||++|+|||||||++|.+ +.+++++++
T Consensus 34 ~~~~~~~~~~a~~~~~~E~---~~~---------~-----~~~~~~~~a~y~~~~T~tTvGyGDi~P~t--~~gr~~~~~ 94 (122)
T 2ih3_C 34 VLLVIVLLAGSYLAVLAER---GAP---------G-----AQLITYPRALWWACETATTVAYGDLYPVT--LWGRLVAVV 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TST---------T-----CCCCSHHHHHHHHHHHHTTCCCSSSCCCS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheeee---cCC---------C-----CccCccccchhheeeeeeeeecCCCCCCC--ccHHHHHHH
Confidence 3445666778888887642 100 1 23478999999999999999999999987 689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 275 QSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 275 q~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
++++|+.+.++.+|.+.+.+++..++
T Consensus 95 ~~~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 95 VMVAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999877664
No 16
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.28 E-value=1.4e-12 Score=114.75 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHH
Q psy16725 193 FTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLV 272 (434)
Q Consensus 193 f~~~yll~~llFA~lY~~i~~~~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~ 272 (434)
.++..++.++++|.+++.+. ++. ++ +...++.+|||||++|+|||||||++|.+ +.+++++
T Consensus 11 ~~~~~~~~~~~~a~~~~~~e---~~~---------~~-----~~~~~~~~a~yf~~~T~tTvGyGd~~P~t--~~~r~~~ 71 (139)
T 3eff_K 11 ATVLLVIVLLAGSYLAVLAE---RGA---------PG-----AQLITYPRALWWSVETATTVGYGDLYPVT--LWGRLVA 71 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---SSC---------TT-----CCCCCHHHHHHHHHHHHTTCCCSSSCCCS--SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCC---------CC-----cccCCHHHHHHHHheeeecccCCCCcCCC--cCHHHHH
Confidence 34455667777888888763 110 01 23468999999999999999999999987 4799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCccc
Q psy16725 273 SIQSIFGVLINALTGGIIFAKLAKPKK 299 (434)
Q Consensus 273 ~vq~lvGvll~A~~~GlIfaK~SRP~~ 299 (434)
++.+++|+.+.++.+|.+.+.+.+..+
T Consensus 72 ~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 72 VVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876544
No 17
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.23 E-value=4.5e-12 Score=125.86 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=58.0
Q ss_pred ccccccccccCCccceeecCCCCcccchhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy16725 68 NYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIA 136 (434)
Q Consensus 68 ~~~~~R~v~K~G~cnv~~~~~~~~~~~~ryl~D~fttlvd~~Wr~~l~~F~~~~~~sW~~F~~~~~~ia 136 (434)
.++++|+|.|||+|||.+.|++.+. |++|+|+++++++||+.+++|+++|+++|++||++||+++
T Consensus 8 ~~~~~r~~~k~G~~nv~~~~~~~~~----~l~d~~~~~l~~~~~~ll~~~~~~~~~~~l~fa~ly~~~~ 72 (301)
T 1xl4_A 8 PARKPRILNSDGSSNITRLGLEKRG----WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACG 72 (301)
T ss_dssp ---CCCSBCTTSCBCCEESSCCCCC----SSCSSTTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccceeEecCCcEEEEECCcchhH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466899999999999999997542 6899999999999999999999999999999999999986
No 18
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.20 E-value=9.9e-12 Score=109.80 Aligned_cols=61 Identities=23% Similarity=0.411 Sum_probs=54.8
Q ss_pred ccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 238 DDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 238 ~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
.++.+|+|||++|+|||||||++|.+ +.+++++++.+++|+.+.|.++|.+.+.+...+++
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t--~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 102 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVT--PIGRILASIMMLFGIAFIGMITSTITNFFRCKKPT 102 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999987 68999999999999999999999998888654433
No 19
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.17 E-value=1.1e-11 Score=123.98 Aligned_cols=60 Identities=32% Similarity=0.603 Sum_probs=50.3
Q ss_pred ccccccccccCCccceeecCCCCcccchhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHH
Q psy16725 68 NYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFA 129 (434)
Q Consensus 68 ~~~~~R~v~K~G~cnv~~~~~~~~~~~~ryl~D~fttlvd~~Wr~~l~~F~~~~~~sW~~F~ 129 (434)
|++|+|+|.|||+|||++.|++++.. ||++|+|+|+++++|++.+++|+++|+++|++||
T Consensus 2 ~~~~~R~~~k~G~~nv~~~~~~~~~~--r~l~dl~~tl~~~~~~~~ll~f~~~~~~~~~~fa 61 (321)
T 2qks_A 2 SKKRQRFVDKNGRCNVQHGNLGSETS--RYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFA 61 (321)
T ss_dssp -CCCCCSBCTTSCBCCCCCC---------CCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccceeeeCCcEEEEEecccchhh--HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999975433 5899999999999999999999999999999999
No 20
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.14 E-value=3.9e-11 Score=100.07 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=55.5
Q ss_pred ccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 238 DDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 238 ~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
.++.+|+|||+.|+|||||||++|.+ +.+++++++.+++|+.+.+..+|.+.++++.++-+
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t--~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQT--DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 36899999999999999999999977 58999999999999999999999999999876543
No 21
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.04 E-value=4.4e-10 Score=96.29 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=52.6
Q ss_pred cchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q psy16725 239 DFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKK 299 (434)
Q Consensus 239 ~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~ 299 (434)
++.+|+|||++|+|||||||++|.+ +.+++++++.+++|+.+.+..+|.+.++++..+.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t--~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQT--DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhcceeCCCCccCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999977 6899999999999999999999999999865543
No 22
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.03 E-value=1.8e-10 Score=107.79 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHH
Q psy16725 196 SFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQ 275 (434)
Q Consensus 196 ~yll~~llFA~lY~~i~~~~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq 275 (434)
..++.+.++|++++... +++ .+ ++..++.+|+||+++|+||+||||++|.+ +.+++++++.
T Consensus 139 ~~~~~~~~~~~~~~~~e--~~~----------~~-----~~~~~~~~s~y~~~~t~tTvGyGdi~P~t--~~~~~~~~~~ 199 (223)
T 1orq_C 139 AVMLTVLYGAFAIYIVE--YPD----------PN-----SSIKSVFDALWWAVVTATTVGYGDVVPAT--PIGKVIGIAV 199 (223)
T ss_dssp HHHHHHHHHHHHHHHTT--SSS----------TT-----CSCCSHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCC----------cC-----CCcCcchhHHHhHHhHHhccCCCCCCCCC--HhHHHHHHHH
Confidence 33455666788777653 111 01 23578999999999999999999999976 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCc
Q psy16725 276 SIFGVLINALTGGIIFAKLAKP 297 (434)
Q Consensus 276 ~lvGvll~A~~~GlIfaK~SRP 297 (434)
+++|+.+.|+.+|.+.+.+++.
T Consensus 200 ~~~G~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 200 MLTGISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 23
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.03 E-value=3.3e-10 Score=91.57 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=49.6
Q ss_pred cchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16725 239 DFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKL 294 (434)
Q Consensus 239 ~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~ 294 (434)
++.+|+|||++|+|||||||++|.+ +.+++++.+.++.|+.+.+..+|.+...+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t--~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHT--PLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999976 68999999999999999999999887654
No 24
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.98 E-value=8.4e-13 Score=119.98 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=56.2
Q ss_pred cccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 237 VDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 237 ~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
..++.+|||||++|+|||||||++|.+. .+++++++.+++|+.+.++++|.+.+.+.+..++
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~--~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTL--WGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSS--TTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999874 7899999999999999999999999998876544
No 25
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=98.96 E-value=9.9e-10 Score=97.72 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=48.5
Q ss_pred ccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16725 238 DDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFA 292 (434)
Q Consensus 238 ~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfa 292 (434)
.+|.+|+|||++|+|||||||++|.+ +.+++++++.+++|+.+.+..+|.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t--~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQT--DFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999977 589999999999999999999887765
No 26
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.92 E-value=4.8e-10 Score=111.61 Aligned_cols=106 Identities=21% Similarity=0.251 Sum_probs=79.0
Q ss_pred HHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeeee
Q psy16725 174 ASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYS 253 (434)
Q Consensus 174 l~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TT 253 (434)
++.+..++.. +.+.++. +++.+++..++||+++|.+.. +- .| ++..++.+|+||+++|+||
T Consensus 115 ~~~l~~~l~~-~~~~l~~-~~~~~~~~~~~~a~~~~~~e~---~~------------~~--~~f~~~~~s~y~~~~t~tt 175 (355)
T 3beh_A 115 FPVLGRVLAN-EARNLIG-VTTLFGVVLFAVALAAYVIER---DI------------QP--EKFGSIPQAMWWAVVTLST 175 (355)
T ss_dssp HHHHHHHHHH-THHHHHH-HHHHHHHHHHHHHHHHHHHHT---TT------------CH--HHHSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHhhc---CC------------CC--cccccHHHHHHHHHhheee
Confidence 3444444433 3344333 334455667789999988752 10 01 2356899999999999999
Q ss_pred cCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 254 TGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 254 IGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
+||||++|.+ +.+++++++.+++|+++.++.+|.+...+.+..+|
T Consensus 176 vGygd~~p~t--~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 220 (355)
T 3beh_A 176 TGYGDTIPQS--FAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR 220 (355)
T ss_dssp CCCSSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999976 68999999999999999999999999999876554
No 27
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.80 E-value=4.4e-09 Score=111.10 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHH
Q psy16725 198 VLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSI 277 (434)
Q Consensus 198 ll~~llFA~lY~~i~~~~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~l 277 (434)
++...+||.+.|.+. ++-. ..++.+|.+||||+++|+||+||||+.|.+ +.+++++++.++
T Consensus 351 ~i~~~if~~~~~~~e---~~~~--------------~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t--~~gr~f~~~~~l 411 (514)
T 2r9r_B 351 FIGVILFSSAVYFAE---ADER--------------DSQFPSIPDAFWWAVVSMTTVGYGDMVPTT--IGGKIVGSLCAI 411 (514)
T ss_dssp HHHHHHHHHHHHHHH---TTCT--------------TCSCSSHHHHHHHHHHHHTTCCCSSSCCCS--HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhheee---ccCC--------------CccccchhhhhheeeeEEEecccCCCCCCC--cchHhhehhHHH
Confidence 445667888777553 1100 135678999999999999999999999977 578999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCcccc---ccceeeecceEEeeeCC
Q psy16725 278 FGVLINALTGGIIFAKLAKPKKR---SQNLLFSDKAVICQRDG 317 (434)
Q Consensus 278 vGvll~A~~~GlIfaK~SRP~~R---a~tI~FSk~AVI~~rdG 317 (434)
+|+++.++.+|++.+.+++..++ .+.-..+++.++|.++.
T Consensus 412 ~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~l~~h~iicg~~~ 454 (514)
T 2r9r_B 412 AGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIP 454 (514)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEeCCCc
Confidence 99999999999999888765332 22345677777776654
No 28
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.80 E-value=4.4e-09 Score=111.04 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhH
Q psy16725 190 WTIFTLSFVLTWLLFAVGWWIIAYH-HGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEA 268 (434)
Q Consensus 190 llif~~~yll~~llFA~lY~~i~~~-~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a 268 (434)
++.++++.++..++++++|+++.+. .| ...+|.+|||||++|+|||||||++|.+ +.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~-------------------~~~~~~~~~y~~~~t~tTvGygd~~p~~--~~~ 78 (565)
T 4gx0_A 20 LLLYCAFLLVMLLAYASIFRYLMWHLEG-------------------RAYSFMAGIYWTITVMTTLGFGDITFES--DAG 78 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------CCCCHHHHHHHHHHHHTTCCCCSSCCCS--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------CCCchhhhhheeeeeeeeecCCCcCCCC--ccH
Confidence 4445555666677778877765431 11 0137899999999999999999999977 689
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhh----Cccc-cccceeeecceEEee
Q psy16725 269 IFLVSIQSIFGVLINALTGGI-----IFAKLA----KPKK-RSQNLLFSDKAVICQ 314 (434)
Q Consensus 269 ~~l~~vq~lvGvll~A~~~Gl-----IfaK~S----RP~~-Ra~tI~FSk~AVI~~ 314 (434)
++++++.+++|+.+.++.+|. +..++. +.++ +...-..++|.+|+-
T Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G 134 (565)
T 4gx0_A 79 YLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHILIFG 134 (565)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCeEEEEC
Confidence 999999999999999988877 333222 2111 111134577888885
No 29
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.70 E-value=3.2e-09 Score=106.84 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=43.7
Q ss_pred cccccccccCCccceeecCCCCcccchhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy16725 69 YTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWII 135 (434)
Q Consensus 69 ~~~~R~v~K~G~cnv~~~~~~~~~~~~ryl~D~fttlvd~~Wr~~l~~F~~~~~~sW~~F~~~~~~i 135 (434)
+.|+|.+.|||+|||.. +... ++|++|+|+++++.+||+.+++|+++|+++|++||++||+.
T Consensus 24 ~~~~~~~~~~G~~nv~~--~~~~---~~~~~d~~~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e 85 (333)
T 1p7b_A 24 PPRGGRRIWSGTREVIA--YGMP---ASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLG 85 (333)
T ss_dssp ------------CCSSC--EECC---CCHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred ccceeeEecCCceEEEE--cccc---chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667999999964 3222 25899999999999999999999999999999999999875
No 30
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.42 E-value=1.6e-09 Score=106.98 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=50.6
Q ss_pred cchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q psy16725 239 DFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPK 298 (434)
Q Consensus 239 ~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~ 298 (434)
+|.+||||+++|+|||||||++|.+ +.+++++++.+++|+.+.++++|.+...+.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t--~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPST--PLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCC--SSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999976 479999999999999999999999988887654
No 31
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.35 E-value=8.8e-08 Score=95.43 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=52.4
Q ss_pred ccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q psy16725 238 DDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKP 297 (434)
Q Consensus 238 ~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP 297 (434)
-+|.+|||||++|+|||||||++|.+ +.+++++++.+++|+.+.+++++.+-..+++.
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T--~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRT--DAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999988 58999999999999999999998877777543
No 32
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.29 E-value=3.9e-07 Score=90.78 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=50.3
Q ss_pred cchheeeeeeEeeeecCCCcccccCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 239 DFITSFLFSMETQYSTGYGSRIPNTHC----PEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 239 ~f~~AF~FSveT~TTIGYGdi~Pt~~C----p~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
+|.+|+||++.|+|||||||+.|.+.- |..++++++-+++|+.+.+.+++.+-..+..-++|
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999997651 12346888999999999999999877766554444
No 33
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.28 E-value=6.9e-07 Score=87.89 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=46.3
Q ss_pred ccchheeeeeeEeeeecCCCcccccCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16725 238 DDFITSFLFSMETQYSTGYGSRIPNTHCP-----EAIFLVSIQSIFGVLINALTGGIIF 291 (434)
Q Consensus 238 ~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp-----~a~~l~~vq~lvGvll~A~~~GlIf 291 (434)
-++.+|+||++.|+|||||||+.|.+.-. .+++++++-+++|+.+.+.+++.+.
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~ 258 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFC 258 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999987521 4689999999999999998887654
No 34
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.24 E-value=2.5e-07 Score=91.02 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=53.1
Q ss_pred ccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q psy16725 238 DDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPK 298 (434)
Q Consensus 238 ~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~ 298 (434)
-+|.+|+||+++|+|||||||++|.+ +.|++++++-+++|+.+.+++++.+..++....
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T--~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 150 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLS--DGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV 150 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999987 689999999999999999999988877776543
No 35
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.77 E-value=2.2e-05 Score=75.79 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=70.3
Q ss_pred cHHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCcccchheeeeeeEeee
Q psy16725 173 AASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQY 252 (434)
Q Consensus 173 yl~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~~~~~~~~~~~pCi~~~~~f~~AF~FSveT~T 252 (434)
-++.+..++.. +++.++. +++..++..++||.+-+.+- .|. .| .+++++.+|+|+.++|+|
T Consensus 133 ~l~~l~~~l~~-~~~~l~~-~~~~~~~~~~~fa~~g~~~f--~~~-------------~~--~~F~s~~~a~~~~~~~~T 193 (285)
T 3rvy_A 133 QMRKIVSALIS-VIPGMLS-VIALMTLFFYIFAIMATQLF--GER-------------FP--EWFGTLGESFYTLFQVMT 193 (285)
T ss_dssp THHHHHHHHHH-HGGGGHH-HHHHHHHHHHHHHHHHHHHH--TTT-------------CH--HHHSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHh--Ccc-------------cc--cccCCHHHHHHHHHHHHH
Confidence 34566666654 4444333 33344555566776544331 111 11 357899999999999999
Q ss_pred ecCCC-ccc-ccCCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q psy16725 253 STGYG-SRI-PNTHC-P-EAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300 (434)
Q Consensus 253 TIGYG-di~-Pt~~C-p-~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~R 300 (434)
|+||| |+. |.... | .+.+++++-++.|+++.++.+|++...+++..+.
T Consensus 194 ~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 194 LESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp TTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 874 65431 2 3478888889999999999999999999877654
No 36
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=91.55 E-value=0.35 Score=44.60 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=49.5
Q ss_pred cCcccchheeeeeeEeeeecCCCccc-cc-CCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q psy16725 235 TGVDDFITSFLFSMETQYSTGYGSRI-PN-THCPE-AIFLVSIQSIFGVLINALTGGIIFAKLAKPKK 299 (434)
Q Consensus 235 ~~~~~f~~AF~FSveT~TTIGYGdi~-Pt-~~Cp~-a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~ 299 (434)
++.+++.+|++-..+++||-||+|.. +. ...|. ..+..+.-.+.+.++..+.+|++...+++.++
T Consensus 161 ~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~~~ 228 (229)
T 4dxw_A 161 SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQKKL 228 (229)
T ss_dssp TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999962 11 11123 34555666778889999999999999987654
No 37
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A
Probab=90.62 E-value=0.079 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=15.6
Q ss_pred ccccccccccCCccceeecCCCCcc
Q psy16725 68 NYTLRRLVSKTGSCRVSKLNSSQHL 92 (434)
Q Consensus 68 ~~~~~R~v~K~G~cnv~~~~~~~~~ 92 (434)
++.|+|+|.|+|.|||+++..+++.
T Consensus 2 ~~~~~~~~~~~g~~~v~~~rfsk~R 26 (207)
T 1n9p_A 2 SKKRQRFVDKNGRCNVQHGNLGSER 26 (207)
T ss_dssp ---CCCSBCTTSCBCEEC-----CC
T ss_pred cchhhhhhhcCCceeeEEeeecCCc
Confidence 5678999999999999999987654
No 38
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Probab=88.76 E-value=0.12 Score=48.55 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=18.5
Q ss_pred ccccccccccccCCccceeecCCCCcc
Q psy16725 66 SNNYTLRRLVSKTGSCRVSKLNSSQHL 92 (434)
Q Consensus 66 ~~~~~~~R~v~K~G~cnv~~~~~~~~~ 92 (434)
+.+|+.+|||+|||.||++++..+++.
T Consensus 2 ~~~~~~~~~~~~~g~~~~v~~~~pk~R 28 (208)
T 3agw_A 2 SHMRKIQRYVRKDGKCNVHHGNVREKR 28 (208)
T ss_dssp -----CCCSBCTTSCBCBSTTCCC---
T ss_pred chHHHHHHHHhcCCeeeEEEeccCCcc
Confidence 357788999999999999999998764
No 39
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus}
Probab=83.23 E-value=0.46 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.8
Q ss_pred CccccceEEeeCCCcceeecCCCC
Q psy16725 143 NNYTLRRLVSKTGSCRVSKLNSSQ 166 (434)
Q Consensus 143 ~~~~~~Rlv~K~G~~nV~~~~v~~ 166 (434)
+++++.|+|.|+|+|||.+.+++.
T Consensus 40 ~~~~~~rfV~K~G~CnV~f~~~~~ 63 (309)
T 2xky_I 40 RQQCRSRFVKKDGHCNVQFINVGE 63 (309)
T ss_pred ccccceEEEccCCeeeeEEeecCc
Confidence 456778999999999999998875
No 40
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=36.26 E-value=15 Score=34.17 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=16.8
Q ss_pred cccccccccCCccceeecCCCC
Q psy16725 69 YTLRRLVSKTGSCRVSKLNSSQ 90 (434)
Q Consensus 69 ~~~~R~v~K~G~cnv~~~~~~~ 90 (434)
..|+|+++|||+|.+..---|+
T Consensus 3 ~~~~~~~~~~~~~vfakisrP~ 24 (208)
T 2gix_A 3 HGRSRFVKKDGHCNVQFINVGE 24 (208)
T ss_dssp CCSSCSBCTTSCBCEEEECCCC
T ss_pred cccccccccCceEEEEEecCCc
Confidence 3578999999999997644343
No 41
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus}
Probab=29.89 E-value=21 Score=34.63 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=15.3
Q ss_pred ccccccccccCCccceeecCCCC
Q psy16725 68 NYTLRRLVSKTGSCRVSKLNSSQ 90 (434)
Q Consensus 68 ~~~~~R~v~K~G~cnv~~~~~~~ 90 (434)
...|+|+|+|||+|-+..---|.
T Consensus 7 ~~~~~~~~~~~~~~vFaKiSrPk 29 (270)
T 1u4f_A 7 QQCRSRFVKKDGHCNVQFINVGE 29 (270)
T ss_dssp ----CCSBCTTSCBCEEEESCCC
T ss_pred HHHHHhhhhcCCcEEEEEccCCc
Confidence 44678999999999997644444
No 42
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=24.86 E-value=26 Score=37.41 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=45.1
Q ss_pred cchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q psy16725 239 DFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKK 299 (434)
Q Consensus 239 ~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~ 299 (434)
++.+++||++.+++..| ++..|.. ..+++++.+=.+.++++.+.-++.+.+-++.|+.
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~--~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 620 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRS--LSGRIVGGVWWFFTLIIISSYTANLAAFLTVERM 620 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 56789999999999888 5666654 6899999999999999999999999999987654
No 43
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=20.96 E-value=76 Score=31.17 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=23.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16725 185 RWRWVWTIFTLSFVLTWLLFAVGWWII 211 (434)
Q Consensus 185 ~W~~~llif~~~yll~~llFA~lY~~i 211 (434)
+|-++++..+++|+++..+||+..+++
T Consensus 32 sW~~IllFYliFY~~La~lF~~~m~v~ 58 (305)
T 2zxe_B 32 SWFKIFLFYLIFYGCLAGIFIGTIQVL 58 (305)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999987765
Done!