RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16725
(434 letters)
>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel.
Length = 336
Score = 279 bits (716), Expect = 2e-91
Identities = 128/322 (39%), Positives = 171/322 (53%), Gaps = 60/322 (18%)
Query: 151 VSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWI 210
VSK G C V N + D FT+L++ +WR++ IF+L+F+L+WL F WW+
Sbjct: 1 VSKDGRCNVYFKNVRGERGRYL--QDIFTTLVDLKWRYMLLIFSLAFLLSWLFFGTIWWL 58
Query: 211 IAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIF 270
IA+ HGDL+ +P + PCV V F ++FLFS+ETQ + GYG R CP AIF
Sbjct: 59 IAFAHGDLEPAPDANH----TPCVMNVHSFTSAFLFSIETQTTIGYGFRCITEECPLAIF 114
Query: 271 LVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRK 330
L+ +QSI G +INA G IFAK+A+PKKR++ L+FS AVI RDG+ L++R+GDLRK
Sbjct: 115 LLILQSILGCIINAFMIGCIFAKMARPKKRAETLIFSHHAVIALRDGKLCLMFRVGDLRK 174
Query: 331 SHLIGAKLRAWFLCRRMTREGEMI----------------------------------PR 356
SHL+ A +RA L R+T EGE I P
Sbjct: 175 SHLVEAHVRAQLLKSRVTPEGEFIPLHQIDIKVGFDTGSDRIFLVSPLTICHVIDERSPL 234
Query: 357 YKYK--------------LNITVDDGG------SSYLPSEIQWGHRFMPMFIKRDCKYYV 396
Y L TV+ G +SYLP EI WGHRF P+ + KY V
Sbjct: 235 YDLSAQDLKSADFEIVVILEGTVESTGMTCQARTSYLPEEILWGHRFEPVVSLENGKYKV 294
Query: 397 DYARFQNTVLVNMPLCSAYQYE 418
DY++F T V P CSA + +
Sbjct: 295 DYSQFHKTYEVPTPDCSARELD 316
Score = 68.5 bits (168), Expect = 1e-12
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 75 VSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWI 134
VSK G C V N + D FT+L++ +WR++ IF+L+F+L+WL F WW+
Sbjct: 1 VSKDGRCNVYFKNVRGERGRYL--QDIFTTLVDLKWRYMLLIFSLAFLLSWLFFGTIWWL 58
Query: 135 IA 136
IA
Sbjct: 59 IA 60
>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218). This
family contains hypothetical plant proteins of unknown
function. Family members contain a number of conserved
cysteine residues.
Length = 97
Score = 36.1 bits (84), Expect = 0.004
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 109 RWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNYTLRRLVSKTGSCRVSK 161
R R + + FVL+W+ F + + ++ + + N Y R V SC K
Sbjct: 32 RKRALAVVC---FVLSWIAFVIAFALLLA-GAARNAYHTRYNVHFRPSCYTLK 80
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 34.6 bits (80), Expect = 0.081
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 20/77 (25%)
Query: 237 VDDFITSFLFSMETQYSTGYGSRIPNTHCPEA-------------IFLVSIQSIFGVLIN 283
++ T+F FS+ T + GYG +P A +F SI +IFG +I
Sbjct: 166 IESLSTAFYFSIVTMSTVGYGDIVP--VSESARLFTISVIILGITVFATSISAIFGPVIR 223
Query: 284 ALTGGIIFAKLAKPKKR 300
G + +L K +
Sbjct: 224 ---GNL--KRLVKGRIS 235
>gnl|CDD|219313 pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S
component. This family is the substrate-binding
component (S component) of the energy coupling-factor
(ECF)-type riboflavin transporter. It is a transmembrane
protein which binds riboflavin, and is responsible for
riboflavin-uptake by cells.
Length = 169
Score = 31.8 bits (73), Expect = 0.36
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 17/113 (15%)
Query: 189 VWTIFTLSFVLTWLL-FAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFS 247
+W +T +++ L G IA + + + F
Sbjct: 73 IWAPWT--LIISGLQGLIAGL--IAKKLKKNLENGIFKLK------------GLVLFNIV 116
Query: 248 METQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300
M Y +G I E + V +QSI ++ A+ G I+ L K +
Sbjct: 117 MVIGYFIAWGLLIDILIYSEPAWKVFLQSIPANIVQAVVGAIVGLPLLKALAK 169
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 30.0 bits (68), Expect = 1.6
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 193 FTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQY 252
L +L +FA+ + D +P N + D + + L+ T
Sbjct: 97 LLLLLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGN----SNFDSYGEALLWLFRTLT 152
Query: 253 STGYGSRIPNTHCP----EAIFLVSIQSIFGVLINALTGGII 290
+ G+G + +T P IF V + GVL+ L G+I
Sbjct: 153 TEGWGDVMYDTLVPGTVLGKIFFVIFIILGGVLLLNLLIGVI 194
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 28.0 bits (63), Expect = 1.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 9 EVDTEEEFTEEEEGE 23
+ D++ E+ EEEEGE
Sbjct: 41 DYDSDAEWEEEEEGE 55
>gnl|CDD|183283 PRK11706, PRK11706, TDP-4-oxo-6-deoxy-D-glucose transaminase;
Provisional.
Length = 375
Score = 29.4 bits (67), Expect = 3.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 367 DGGSSYLPSEIQ 378
D GSSYLPSE+Q
Sbjct: 227 DIGSSYLPSELQ 238
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase. Members of
this family contain a sensor histidine kinase domain
(pfam00512) and a domain found in bacterial signal
proteins (pfam00672). This group is separated
phylogenetically from related proteins with similar
architecture and contains a number of proteins
associated with heavy metal resistance efflux systems
for copper, silver, cadmium, and/or zinc.
Length = 457
Score = 29.3 bits (66), Expect = 4.1
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 111 RWVWTIFTLSFVLTWLLFAVGWWI--IASKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHL 168
+W+ I L +LT LL GWWI + +P LRRL + L Q L
Sbjct: 164 KWLILIAVLLVLLTALL---GWWITRLGLEP-------LRRLSAVAARISPESL--DQRL 211
Query: 169 PL 170
Sbjct: 212 DP 213
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 29.2 bits (66), Expect = 5.0
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 186 WRWVWTIFTLSFVLTWLLFAVGWWIIAYH 214
WR++ I LS +L L F + +
Sbjct: 780 WRFILIIGLLSAILFILTFLLYLLGFIAN 808
Score = 28.5 bits (64), Expect = 8.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 110 WRWVWTIFTLSFVLTWLLFAVGWW 133
WR++ I LS +L L F +
Sbjct: 780 WRFILIIGLLSAILFILTFLLYLL 803
>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
Length = 514
Score = 29.1 bits (65), Expect = 5.0
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 112 WVWTIFTLSFVLTWLLFAV 130
+WT+ L+FVLTW +F V
Sbjct: 5 CLWTL--LAFVLTWTVFYV 21
Score = 29.1 bits (65), Expect = 5.0
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 188 WVWTIFTLSFVLTWLLFAV 206
+WT+ L+FVLTW +F V
Sbjct: 5 CLWTL--LAFVLTWTVFYV 21
>gnl|CDD|224207 COG1288, COG1288, Predicted membrane protein [Function unknown].
Length = 481
Score = 28.8 bits (65), Expect = 5.6
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 33/106 (31%)
Query: 113 VWTIFTLSFVLTWLLFAVGWWIIASK----PTSSNNYTLRRLVSKTGSCRVSKLNSSQHL 168
VW +FTL + ++ + ASK PT S Y +T +S +
Sbjct: 222 VWVVFTL-ISIIYVYW------YASKVKKDPTLSLVYEDDEEFRETFK----VEDSGER- 269
Query: 169 PLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAV---GWWII 211
FT R + V +FTL+FV +++ V GWW
Sbjct: 270 --------PFTF----RDKLVLLLFTLTFV--IMIWGVIVLGWWFP 301
>gnl|CDD|227696 COG5409, COG5409, EXS domain-containing protein [Signal
transduction mechanisms].
Length = 384
Score = 28.6 bits (64), Expect = 7.1
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 109 RWRWVWTIFTL---SFVLTWLLFAVGWWIIASKPTSSNNYTLRRLVSKTGS-------CR 158
R + F L + W +F W + S + + + K R
Sbjct: 264 RLFHLQIWFALLNSIYTSFWDVFMD--WSLDSLTSLRSWSKRAVTLLKYHIAMIINFLLR 321
Query: 159 VS---KLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSF 197
S H+ L+E R+VW F +
Sbjct: 322 FSWIVYYLPPNHIQHSADIFIFIMQLLEILRRFVWVFFRVEA 363
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the two
membrane helix type ion channels found in bacteria.
Length = 74
Score = 26.0 bits (58), Expect = 9.4
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 239 DFITSFLFSMETQYST-GYGSRIPNTHCPEAIFLVSIQSIFGVLINALT 286
DF+ + FS T +T GYG +P T I + G+ + L
Sbjct: 24 DFLDALYFSFVT-LTTIGYGDIVPLTDA--GRLFTIIYILIGIPLFLLF 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.434
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,087,295
Number of extensions: 2103651
Number of successful extensions: 2581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2569
Number of HSP's successfully gapped: 54
Length of query: 434
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 334
Effective length of database: 6,502,202
Effective search space: 2171735468
Effective search space used: 2171735468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.9 bits)