RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16725
(434 letters)
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 211 bits (539), Expect = 2e-65
Identities = 99/331 (29%), Positives = 153/331 (46%), Gaps = 61/331 (18%)
Query: 148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
+R V K G C V N + +D FT+L++ +WR+ IF + + +TWL F +
Sbjct: 7 QRYVRKDGKCNVHHGNVRETYRYL---TDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMI 63
Query: 208 WWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPE 267
WW+IAY GD+ PCVT ++ F+++FLFS+ET+ + GYG R+ CPE
Sbjct: 64 WWLIAYIRGDM----DHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPE 119
Query: 268 AIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGD 327
I L+ IQS+ G ++NA G +F K+++PKKR++ L+FS AVI RDG+ L++R+GD
Sbjct: 120 GIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVGD 179
Query: 328 LRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGG-----------------S 370
LR SH++ A +RA + + T EGE IP + +N+ G
Sbjct: 180 LRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQ 239
Query: 371 SYLPSEIQWG--------------------------HRFMPMFIKRDCKY---------- 394
S + ++ I ++
Sbjct: 240 SPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDGF 299
Query: 395 -YVDYARFQNTVLVNMPLCSAYQYEKLTRDA 424
VDY F T + P SA + +L A
Sbjct: 300 YEVDYNSFHETYETSTPSLSAKELAELANRA 330
Score = 62.5 bits (151), Expect = 5e-11
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 72 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 131
+R V K G C V N + +D FT+L++ +WR+ IF + + +TWL F +
Sbjct: 7 QRYVRKDGKCNVHHGNVRETYRYL---TDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMI 63
Query: 132 WWIIA 136
WW+IA
Sbjct: 64 WWLIA 68
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 205 bits (522), Expect = 1e-62
Identities = 96/223 (43%), Positives = 140/223 (62%), Gaps = 5/223 (2%)
Query: 148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
R V K G C V N + A D FT+ ++ RWR++ +F+L+F+++WLLF +
Sbjct: 8 NRFVKKNGQCNVEFTNMDDKPQRYIA--DMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLI 65
Query: 208 WWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPE 267
+W+IA HGDL+ D F PCV V+ F+ +FLFS+ETQ + GYG R CP
Sbjct: 66 FWLIALIHGDLENPGGDDTFK---PCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPL 122
Query: 268 AIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGD 327
A+F+V +QSI G +I++ G I AK+A+PKKR+Q LLFS AV+ RDG+ L+WR+G+
Sbjct: 123 AVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGN 182
Query: 328 LRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGS 370
LRKSH++ A +RA + R+T EGE IP + +++ D G
Sbjct: 183 LRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLD 225
Score = 61.7 bits (149), Expect = 1e-10
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 72 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 131
R V K G C V N + A D FT+ ++ RWR++ +F+L+F+++WLLF +
Sbjct: 8 NRFVKKNGQCNVEFTNMDDKPQRYIA--DMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLI 65
Query: 132 WWIIA 136
+W+IA
Sbjct: 66 FWLIA 70
Score = 61.3 bits (148), Expect = 1e-10
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 370 SSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTV-LVNMPLCSAYQYE 418
SSYL SEI WGHRF P+ + +Y VDY+ F T + + P CSA
Sbjct: 279 SSYLASEILWGHRFEPVLFEEKNQYKVDYSHFHKTYEVPSTPRCSAKDLV 328
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 182 bits (463), Expect = 4e-54
Identities = 55/330 (16%), Positives = 109/330 (33%), Gaps = 79/330 (23%)
Query: 148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
+G+ V D + ++ W + FV+ LFA+
Sbjct: 27 GGRRIWSGTREVIAYGMPAS-----VWRDLYYWALKVSWPVFFASLAALFVVNNTLFALL 81
Query: 208 WWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPE 267
+ + D F+ +F FS+ET + GYG P T
Sbjct: 82 YQLG-----------------DAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAH 124
Query: 268 AIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGD 327
AI +++ G+ AL+ G++FA+ A+P+ + F+ A++ +G L+ R +
Sbjct: 125 AI--ATLEIFVGMSGIALSTGLVFARFARPRAKIM---FARHAIVRPFNGRMTLMVRAAN 179
Query: 328 LRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLP------------- 374
R++ + A+ + + R + EG + + + L + ++ L
Sbjct: 180 ARQNVIAEARAKMRLMRREHSSEGYSLMKI-HDLKLVRNEHPIFLLGWNMMHVIDESSPL 238
Query: 375 --------------------------------------SEIQWGHRFMPMFIKRDCKYYV 396
+I+W HR++ + D ++
Sbjct: 239 FGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLMSDVDGMTHI 298
Query: 397 DYARFQNTVLVNMPLCSAYQYEKLTRDALD 426
DY RF +T V P + +
Sbjct: 299 DYTRFNDTEPVEPPGAAPDAQAFAAKPGEG 328
Score = 51.3 bits (122), Expect = 2e-07
Identities = 9/98 (9%), Positives = 28/98 (28%), Gaps = 5/98 (5%)
Query: 46 LESPISENSAGKVYSSKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSL 105
+ + ++ + + +G+ V D +
Sbjct: 1 MNVDPFSPHSSDSFAQAASPARKPPRGGRRIWSGTREVIAYGMPAS-----VWRDLYYWA 55
Query: 106 IECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSN 143
++ W + FV+ LFA+ + + + + +
Sbjct: 56 LKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQS 93
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 181 bits (459), Expect = 1e-53
Identities = 80/337 (23%), Positives = 134/337 (39%), Gaps = 75/337 (22%)
Query: 148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
+R V K G C V N + SD FT+L++ +WRW + + F+L FA
Sbjct: 6 QRFVDKNGRCNVQHGNLGSETSRYL--SDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATL 63
Query: 208 WWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPE 267
+ + + + F +F FS+ET + GYG P
Sbjct: 64 YMLGSAPIAN-----------------QFPAGFGGAFFFSVETLATVGYGDMHPQ--TVY 104
Query: 268 AIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGD 327
A ++ +++ G+ AL G F K+++PKKR++ L+FS+ AVI RDG+ L++R+G+
Sbjct: 105 AHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGN 164
Query: 328 LRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGG-----------------S 370
LR SH++ A++R L R T EGE +P + +L++ G
Sbjct: 165 LRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAK 224
Query: 371 SYLPSEIQWG--------------------------HRFMPMFIKRDCKY---------- 394
S Q + + ++
Sbjct: 225 SPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGF 284
Query: 395 -YVDYARFQNTVLVNMPLCSAYQYEKLTRDALDLVEK 430
VDY++F T V P S + E++ + LV +
Sbjct: 285 FKVDYSQFHATFEVPTPPYSVKEQEEMLLMSSPLVPR 321
Score = 62.0 bits (150), Expect = 7e-11
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 72 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 131
+R V K G C V N + SD FT+L++ +WRW + + F+L FA
Sbjct: 6 QRFVDKNGRCNVQHGNLGSETSRYL--SDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATL 63
Query: 132 WWIIA 136
+ + +
Sbjct: 64 YMLGS 68
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 154 bits (390), Expect = 8e-44
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
R+++ GS +++L + L D + L+ W T+ T +++T LFA+
Sbjct: 12 PRILNSDGSSNITRLGLEKRGWL----DDHYHDLLTVSWPVFITLITGLYLVTNALFALA 67
Query: 208 WWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPE 267
+ + F +F FS++T + GYG IP P
Sbjct: 68 YLACGDVIEN-----------------ARPGSFTDAFFFSVQTMATIGYGKLIPI--GPL 108
Query: 268 AIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGD 327
A LV+++++ G+L A+ +I+A+ +P LFS + VI +G+ L+ R+ +
Sbjct: 109 ANTLVTLEALCGMLGLAVAASLIYARFTRPTAGV---LFSSRMVISDFEGKPTLMMRLAN 165
Query: 328 LRKSHLIGAKLRAWFLCRRMTREGEMIPRY 357
LR +I A + + +++EG + R+
Sbjct: 166 LRIEQIIEADVHLVLVRSEISQEGMVFRRF 195
Score = 63.5 bits (154), Expect = 2e-11
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 72 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 131
R+++ GS +++L + L D + L+ W T+ T +++T LFA+
Sbjct: 12 PRILNSDGSSNITRLGLEKRGWL----DDHYHDLLTVSWPVFITLITGLYLVTNALFALA 67
Query: 132 WWIIA 136
+
Sbjct: 68 YLACG 72
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH;
cytoplasmic assembly, ION channel, beta-barrel,
transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A
3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Length = 208
Score = 127 bits (319), Expect = 1e-34
Identities = 49/189 (25%), Positives = 72/189 (38%), Gaps = 56/189 (29%)
Query: 286 TGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCR 345
+ + + R++ L+FS AVI RDG+ L++R+GDLR SH++ A +RA +
Sbjct: 16 KCNVHHGNVREK--RAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKS 73
Query: 346 RMTREGEMIPRYKYKLNITVDDGG-----------------SSYL--------------- 373
+ T EGE IP + +N+ G S
Sbjct: 74 KQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEI 133
Query: 374 ----------------------PSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPL 411
SEI WG+RF P+ D Y VDY F T + P
Sbjct: 134 VVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDGFYEVDYNSFHETYETSTPS 193
Query: 412 CSAYQYEKL 420
SA + +L
Sbjct: 194 LSAKELAEL 202
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport,
membrane protein; 17.20A {Mus musculus}
Length = 309
Score = 115 bits (288), Expect = 3e-29
Identities = 56/225 (24%), Positives = 81/225 (36%), Gaps = 65/225 (28%)
Query: 252 YSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAK---PKKRSQNLLFSD 308
+ G+G+ H Q + + F + + R++ L+FS
Sbjct: 26 VANGFGNGKSKVHT-------RQQCRSRFVKKDGHCNVQFINVGEKGQRGGRNETLVFSH 78
Query: 309 KAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG 368
AVI RDG+ L+WR+G+LRKSHL+ A +RA L R+T EGE IP + +N+ D G
Sbjct: 79 NAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG 138
Query: 369 GSS---YLPSEIQ---------WG-------------------------------HRFMP 385
P I + ++
Sbjct: 139 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLA 198
Query: 386 MFIKRDCKY-----------YVDYARFQNTVLV-NMPLCSAYQYE 418
I +Y VDY+RF T V N PLCSA
Sbjct: 199 NEILWGHRYEPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSARDLA 243
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of
KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus
musculus}
Length = 208
Score = 106 bits (265), Expect = 5e-27
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 55/190 (28%)
Query: 284 ALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFL 343
G + +KR++ L+FS AVI RDG+ L+WR+G+L+KSHL+ A +RA L
Sbjct: 10 KKDGHCNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLL 69
Query: 344 CRRMTREGEMIPRYKYKLNITVDDGG-----------------SSYL----PSEIQWG-- 380
R+T EGE IP + +N+ D G S L +I
Sbjct: 70 KSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADF 129
Query: 381 --------------------HRFMPMFIKRDCKY-----------YVDYARFQNTV-LVN 408
++ I +Y VDY+RF T + N
Sbjct: 130 EIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLFEEKHYYKVDYSRFHKTYEVPN 189
Query: 409 MPLCSAYQYE 418
PLCSA
Sbjct: 190 TPLCSARDLA 199
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta
barrel, cytoplasmic domain, inward rectifier potassium
channel, metal transport; 1.80A {Mus musculus} SCOP:
b.1.18.16 PDB: 3k6n_A 1u4e_A
Length = 207
Score = 101 bits (254), Expect = 2e-25
Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 56/202 (27%)
Query: 280 VLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLR 339
+ + L +R++ L+FS+ AVI RDG+ L++R+G+LR SH++ A++R
Sbjct: 8 FVDKNGRCNVQHGNL--GSERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIR 65
Query: 340 AWFLCRRMTREGEMIPRYKYKLNITVDDGGSS---YLPSEIQ---------WG------- 380
L R T EGE +P + +L++ G P I +
Sbjct: 66 CKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQ 125
Query: 381 ------------------------HRFMPMFIKRDCKY-----------YVDYARFQNTV 405
+ + ++ VDY++F T
Sbjct: 126 TEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATF 185
Query: 406 LVNMPLCSAYQYEKLTRDALDL 427
V P S + E++ + L
Sbjct: 186 EVPTPPYSVKEQEEMLLMSSPL 207
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1,
IRK1, inwardly rectifying K channel, rectification,
allergen; 2.41A {Mus musculus}
Length = 270
Score = 98.7 bits (245), Expect = 1e-23
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 287 GGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRR 346
G + +KR++ L+FS AVI RDG+ L+WR+G+LRKSHL+ A +RA L R
Sbjct: 18 GHCNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSR 77
Query: 347 MTREGEMIPRYKYKLNITVDDGGSS 371
+T EGE IP + +N+ D G
Sbjct: 78 ITSEGEYIPLDQIDINVGFDSGIDR 102
Score = 64.0 bits (155), Expect = 1e-11
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 370 SSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLV-NMPLCSAYQYEK 419
SSYL +EI WGHR+ P+ + Y VDY+RF T V N PLCSA +
Sbjct: 155 SSYLANEILWGHRYEPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSARDLAE 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-09
Identities = 59/409 (14%), Positives = 110/409 (26%), Gaps = 179/409 (43%)
Query: 41 AMF--Q-NLESPISENSAGKVYSSKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTA 97
A+F Q N + E LR L +T V L
Sbjct: 158 AIFGGQGNTDDYFEE------------------LRDL-YQTYHVLVG--------DLIKF 190
Query: 98 ASDTFTSLIECRWRWVWTIFTLSF-VLTWLLFAVGWWIIASKPTS--SNNYTLRRLVSKT 154
+++T + LI +FT +L WL P++ +Y L +S
Sbjct: 191 SAETLSELIRTTLDAE-KVFTQGLNILEWL----------ENPSNTPDKDYLLSIPISCP 239
Query: 155 G-----------SCRVSKLNSSQHLP---------------LFTAASDTFTSLIECRWRW 188
+ ++ + + A +D++ S
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS---- 295
Query: 189 VWTIFTLSFVLTWLLFAVGWWI-----IAYHHGDLKTSPVRDPF--NDTLPC----VTG- 236
+ +T LF +I AY + L S + D N+ +P ++
Sbjct: 296 ------VRKAITV-LF----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 237 ----VDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINA-----LTG 287
V D++ N+H P V I L+N ++G
Sbjct: 345 TQEQVQDYVNKT-----------------NSHLPAG-KQVEI-----SLVNGAKNLVVSG 381
Query: 288 --------GIIFAKLAKPKKRSQN-LLFSDKAV------------------------ICQ 314
+ K P Q+ + FS++ + I +
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 315 RDGEYRLIWRIGDLRKSHLI-------GAKLRAW------FLCRRMTRE 350
+ + + D++ I G+ LR + + R
Sbjct: 442 DLVKNNVSFNAKDIQ----IPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 41.6 bits (97), Expect = 6e-04
Identities = 64/330 (19%), Positives = 103/330 (31%), Gaps = 122/330 (36%)
Query: 5 LPIEEVDTEEEFTEEEEGECFFSVQNLSWNEGGDTNAMFQNLESPIS------ENSAGKV 58
+ I E D+ E F ++ L + G + N P S EN+ G
Sbjct: 281 VAIAETDSWESFFVSVR----KAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNEG-- 333
Query: 59 YSSKPTS--SNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTI 116
P+ S + L + V+K N HLP A SL+ +
Sbjct: 334 ---VPSPMLS----ISNLTQEQVQDYVNKTN--SHLP---AGKQVEISLVNGA-K----- 375
Query: 117 FTLSFVLTWLLFAVGWWIIASKPTSS---NNYTLRRLVSKTGS--CRV--S--KLN-SSQ 166
+ V++ G P S N TLR+ + +G R+ S KL S++
Sbjct: 376 ---NLVVS------G-------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 167 HLPLFTAASDTF-TSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRD 225
LP+ + F + L+ + L+ ++++ D++ PV D
Sbjct: 420 FLPVASP----FHSHLLVP---------ASDLINKDLVKN----NVSFNAKDIQI-PVYD 461
Query: 226 PFNDTLPCVTGVD-----DFITSFLFSM----------ETQYSTGYGSRIPNTHC----P 266
F G D I+ + TQ+ TH P
Sbjct: 462 TF-------DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA--------THILDFGP 506
Query: 267 EAIFLVSIQSIFGVLINALTGG----IIFA 292
S GVL + G +I A
Sbjct: 507 GGA------SGLGVLTHRNKDGTGVRVIVA 530
Score = 38.5 bits (89), Expect = 0.004
Identities = 70/429 (16%), Positives = 122/429 (28%), Gaps = 141/429 (32%)
Query: 67 NNYTLRRLVSKTGSCRVSKL-------NSSQ-------HLPLFT---AASDTFTSLIECR 109
+ Y+ R L GS L +SQ LP T AA D T+ E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE-- 59
Query: 110 WRWVWTIFTLSF---------------VLTWLL---------------FAVGWWIIASKP 139
+ F L + VL L A
Sbjct: 60 ---LVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 140 TSSNNYTLR-----RLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSL---------IECR 185
++ R+++K K ++S LF A + L +
Sbjct: 116 LVKTKELIKNYITARIMAKR---PFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 186 W---RWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFIT 242
+ R ++ + V + F+ + + +R + G++ I
Sbjct: 170 FEELRDLYQTYH-VLVGDLIKFS----------AETLSELIRTTLDAEKVFTQGLN--IL 216
Query: 243 SFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINAL--TGGIIFAKLAKPKKR 300
+L + Y IP + CP I ++ + + V L T G + + L
Sbjct: 217 EWLENPSNTPDKDYLLSIPIS-CP-LIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGH 273
Query: 301 SQNLLFSDKAVICQRDGE---YRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRY 357
SQ L+ + I + D + + + + IG +R C + P
Sbjct: 274 SQGLVTA--VAIAETDSWESFFVSVRKA--ITVLFFIG--VR----CYEAYPNTSLPPSI 323
Query: 358 KYKLNITVDDG-GSSYLPSEIQWGHRFMPMFIKRDCKY-----YVDYARFQNT------- 404
L ++++ G PS PM + YV+ N+
Sbjct: 324 ---LEDSLENNEGV---PS---------PMLSISNLTQEQVQDYVNKT---NSHLPAGKQ 365
Query: 405 ---VLVNMP 410
LVN
Sbjct: 366 VEISLVNGA 374
Score = 37.3 bits (86), Expect = 0.011
Identities = 48/271 (17%), Positives = 79/271 (29%), Gaps = 105/271 (38%)
Query: 214 HHGDLKTS-PV-----------RDPFNDTLPCVT---GVDDFITS-------FLFSMETQ 251
HG L+ V ++ FN LP T DD T+ FL
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL------ 65
Query: 252 YSTGY-GSRIPNTHCP-------------EAIFLVS--IQSIFGVLINALTGGIIFAK-- 293
GY S + + E +L I ++ L+ ++ K
Sbjct: 66 ---GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 294 ----------LAKP-KKRSQNLLFSDKAVICQRDGEYRLIWRIG----------DLRK-- 330
+P K+S + LF +AV +G +L+ G +LR
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALF--RAV---GEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 331 ---SHLIGAKLR--AWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLPSEIQWGHRFMP 385
L+G ++ A L + + + LNI ++W P
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-------------LEWLEN--P 222
Query: 386 MFIKRDCKYYVDYARFQNTVLVNMPLCSAYQ 416
K Y+ ++ PL Q
Sbjct: 223 --SNTPDKDYLLSI------PISCPLIGVIQ 245
Score = 36.6 bits (84), Expect = 0.018
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 45/119 (37%)
Query: 211 IAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFS------METQYSTGYGSRIPNTH 264
I ++ + + D T +++ TS+ F TQ T
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ----------FTQ 1733
Query: 265 CPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAV----ICQRDGEY 319
P A+ L+ + F L +S+ L+ +D + GEY
Sbjct: 1734 -P-ALTLMEK-AAFEDL------------------KSKGLIPADATFAGHSL----GEY 1767
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 65/466 (13%), Positives = 123/466 (26%), Gaps = 127/466 (27%)
Query: 1 MRPILPIEEVDTEEEFTEEEEGECFFSVQNLSW---NEGGDTNAMF------QN---LES 48
+ IL EE+D + G L W ++ + F N L S
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSG-----TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 49 PISENSAGKVYSSKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIEC 108
PI S T RL + +K N S+ L + L
Sbjct: 97 PIKTEQRQP---SMMTRMYIEQRDRL--YNDNQVFAKYNVSR-LQPYLKLRQALLELRPA 150
Query: 109 RW----------RWVWTIFTLSF--VLTWLLFAVGWWIIASKPTSSNNYT--LRRLVSKT 154
+ + + V + F + +W+ S L++L+ +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 155 GSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYH 214
S+ + S ++ L + + + + L V
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--Q-----NAKAW--- 259
Query: 215 HGDLKTSPVRDPFNDTLPC---VTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFL 271
+ FN L C +T +T FL + T + + + T E
Sbjct: 260 ----------NAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVK-- 304
Query: 272 VSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKS 331
+L+ L L + + S
Sbjct: 305 -------SLLLKYL--DCRPQDLPREVLTTNPRRLS------------------------ 331
Query: 332 HLIGAKLRAWFLCRRMTREGEMIPRYKY----KLNITVDDGGSSYLPSEIQWGHRFMPMF 387
+I +R L +K+ KL ++ + P+E +
Sbjct: 332 -IIAESIRDG-LAT--------WDNWKHVNCDKLTTIIESSLNVLEPAEYR--------- 372
Query: 388 IKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDALDLVEKKEK 433
K + + F + + L S ++ + D + +V K K
Sbjct: 373 -----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Score = 29.1 bits (64), Expect = 4.2
Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 66/187 (35%)
Query: 213 YHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLV 272
+HH D +T + + D L D F+ +F
Sbjct: 4 HHHMDFETGEHQYQYKDILSVF--EDAFVDNF---------------------------- 33
Query: 273 SIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKS- 331
+ + + + L+ K+ +++ S AV G RL W + ++
Sbjct: 34 DCKDVQDMPKSILS-----------KEEIDHIIMSKDAV----SGTLRLFWTLLSKQEEM 78
Query: 332 --HLIGAKLRA---WFL--CRRMTREGEMIPR-YKYKLNITVDDGGSSYLPSEIQWGHRF 383
+ LR + + + R+ M+ R Y + + +D F
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND------------NQVF 126
Query: 384 MPMFIKR 390
+ R
Sbjct: 127 AKYNVSR 133
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 33.6 bits (77), Expect = 0.10
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 32/134 (23%)
Query: 185 RWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSF 244
+ T L + + G+ I + S
Sbjct: 15 VLKVPATRILLLVLAVIIYGTAGFHFIEGE------------------------SWTVSL 50
Query: 245 LFSMETQYSTGYGSRIPNTHCPEA-IFLVSIQ----SIFGVLINALTGGIIFAKLAKPKK 299
++ T + GYG P+T P F V++ F V + L +I + K
Sbjct: 51 YWTFVTIATVGYGDYSPST--PLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG 108
Query: 300 RSQNLLFSDKAVIC 313
S VIC
Sbjct: 109 LIDVAK-SRHVVIC 121
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 32.5 bits (74), Expect = 0.27
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 255 GYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQN 303
GYG IP + L + G+ I L GI+ + +R
Sbjct: 177 GYGDTIPQS--FAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDF 223
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 31.4 bits (71), Expect = 0.28
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 243 SFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQ 302
+ +S+ET + GYG P T + + + G+ L + +++ Q
Sbjct: 71 ALWWSVETATTVGYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128
Query: 303 NLLFSDKAVICQRDGEYRLIWRIGD 327
F + + R + +
Sbjct: 129 Q-QFVRHSEKAAEEAYTRTTRALHE 152
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 30.1 bits (68), Expect = 0.41
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 235 TGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKL 294
+ + + +S+ET + GYG R P T E + G+ + AL +
Sbjct: 36 AALISYPDAIWWSVETATTVGYGDRYPVT--EEGRKVAEQVMKAGIEVFALVTAALATDF 93
Query: 295 AKPKKRSQ 302
+ ++ +
Sbjct: 94 VRREEERR 101
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 30.8 bits (69), Expect = 0.94
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 255 GYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQN 303
GYG +P T + S+ +I GVL AL +I + R
Sbjct: 391 GYGDMVPTT--IGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE 437
>1flc_A Haemagglutinin-esterase-fusion glycoprotein; receptor binding,
membrane fusion, influenz hydrolase; HET: NDG NAG BMA
MAN; 3.20A {Influenza c virus} SCOP: b.19.1.3 c.23.10.2
Length = 432
Score = 30.6 bits (68), Expect = 1.0
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 214 HHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVS 273
HHGD + + + C++ + F+ + +G CP A S
Sbjct: 354 HHGDQEMRELLSGLDYEARCISQSGWVNETSPFTEKYLLPPKFG------RCPLAAKEES 407
Query: 274 IQSIFGVLINALTGGIIFAKLAKPKKR 300
I I L+ +G + KPK R
Sbjct: 408 IPKIPDGLLIPTSG--TDTTVTKPKSR 432
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 29.3 bits (66), Expect = 1.1
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 255 GYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQ 302
YG P T + + + G+ L + ++ +
Sbjct: 77 AYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERR 122
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 29.1 bits (65), Expect = 1.4
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 243 SFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQ 302
+ +S+ET + GYG P T + + + G+ L + ++ +
Sbjct: 44 ALWWSVETATTVGYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERR 101
Query: 303 N 303
Sbjct: 102 G 102
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural
genomics, PSI-biology, NEW YORK consortium on MEM
protein structure, nycomps; HET: LDA; 2.30A {Idiomarina
loihiensis}
Length = 249
Score = 29.6 bits (66), Expect = 1.9
Identities = 11/70 (15%), Positives = 17/70 (24%)
Query: 162 LNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTS 221
N FT + W+ F + W L + +
Sbjct: 39 TNLILFSLAFTWLYGEVDYWLNRFMSWLPDFFQWLEFILWPLAVITIIALFSFIFSTIMH 98
Query: 222 PVRDPFNDTL 231
+ PFN L
Sbjct: 99 LIAAPFNGLL 108
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 28.6 bits (64), Expect = 2.1
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 255 GYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQN 303
GYG P T + + + G+ L + ++ +
Sbjct: 100 GYGDLYPVT--LWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146
>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus}
Length = 169
Score = 28.8 bits (64), Expect = 2.5
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 340 AWFLCRRMTREGEMIP------RYKYKLNITVDDGGSSYLPSEIQ 378
+W L +R REGEM P Y+ D LP +
Sbjct: 79 SWLLVQRAVREGEMPPEAACAEAYRLAEEAPADGPAVEELPFGLM 123
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 28.0 bits (62), Expect = 3.7
Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 42/176 (23%)
Query: 181 LIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDF 240
L C W F + FVLT+L G + G
Sbjct: 15 LKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGL---------------------RP 53
Query: 241 ITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKR 300
+ + FS+ T + G G+ P T + ++ I G++ + + +L
Sbjct: 54 LDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 113
Query: 301 SQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPR 356
+ + +R+ + K I KL +R+G ++PR
Sbjct: 114 RK---------------KETDAYRLEVMEKLEAIEKKL------AEHSRQGSLVPR 148
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein,
structural genomics, PSI-2; 2.30A {Desulfovibrio
vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Length = 340
Score = 28.1 bits (62), Expect = 5.8
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 168 LPLFTAASDTFTSLIECRWR-----WVWTIFTLSFVL-TWLLFAVGWWIIAYHHGDLKTS 221
+ + A + FT++I W T FVL TWLL + + +H G L
Sbjct: 102 MLGYVALNGAFTTIIMASLLNFLGKWGVPALTAPFVLATWLLMFGVYKLSLFHPGALIAP 161
Query: 222 PVRDPFNDTLPCVTGVDDFITSFLFSM 248
+ F+ +
Sbjct: 162 ALPSVAGLADMGTVTGRTFMEGLFKGV 188
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph,
bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia
pachyptila} SCOP: b.122.1.3 c.26.1.5
Length = 396
Score = 28.1 bits (61), Expect = 6.1
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 290 IFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLI---GAKLRAWFLCRR 346
IF + +D ++ + ++ + D K + G K+R
Sbjct: 313 IFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTKVR------E 366
Query: 347 MTREGEMIPRY 357
M +G P
Sbjct: 367 MLGQGIAPPPE 377
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 27.5 bits (61), Expect = 9.8
Identities = 14/116 (12%), Positives = 38/116 (32%), Gaps = 9/116 (7%)
Query: 188 WVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFS 247
+ + ++ + + +G+ ++ H DLK P + V + +TS +
Sbjct: 369 IALALTVVIYLCAYFMLFIGYIVLVLKHPDLK-RTFNIPGGKGVKLVVAIVGLLTSIM-- 425
Query: 248 METQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQN 303
S +P + + ++ + + L I + K ++
Sbjct: 426 ------AFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANT 475
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.434
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,676,223
Number of extensions: 382480
Number of successful extensions: 818
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 59
Length of query: 434
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 338
Effective length of database: 4,021,377
Effective search space: 1359225426
Effective search space used: 1359225426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.9 bits)