RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16725
(434 letters)
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 202
Score = 99 bits (249), Expect = 3e-25
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 56/188 (29%)
Query: 289 IIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMT 348
+ L +R++ L+FS+ AVI RDG+ L++R+G+LR SH++ A++R L R T
Sbjct: 13 VQHGNL--GSERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQT 70
Query: 349 REGEMIPRYKYKLNITVDDGGS-SYLPSEIQWGHRF---MPMF----------------- 387
EGE +P + +L++ G +L S + H P +
Sbjct: 71 PEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVI 130
Query: 388 ----------------------IKRDCKY-----------YVDYARFQNTVLVNMPLCSA 414
+ ++ VDY++F T V P S
Sbjct: 131 LEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATFEVPTPPYSV 190
Query: 415 YQYEKLTR 422
+ E++
Sbjct: 191 KEQEEMLL 198
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 158
Score = 93.4 bits (232), Expect = 2e-23
Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 52/155 (33%)
Query: 304 LLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNI 363
++F+ A++ +G L+ R + R++ + A+ + + R + EG + + + L +
Sbjct: 5 IMFARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKI-HDLKL 63
Query: 364 TVDDGGSSYLP------------------------------------------------- 374
++ L
Sbjct: 64 VRNEHPIFLLGWNMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAW 123
Query: 375 --SEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLV 407
+I+W HR++ + D ++DY RF +T V
Sbjct: 124 EHDDIRWHHRYVDLMSDVDGMTHIDYTRFNDTEPV 158
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 161
Score = 76.0 bits (187), Expect = 4e-17
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 301 SQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYK 360
+ +LFS + VI +G+ L+ R+ +LR +I A + + +++EG + R+ +
Sbjct: 1 TAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRF-HD 59
Query: 361 LNITVDD 367
L +T
Sbjct: 60 LTLTRSR 66
Score = 51.4 bits (123), Expect = 1e-08
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 370 SSYLPSEIQWGHRFMPMF-IKRDCKYYVDYARFQNTV 405
+Y EI WG F+ +F D + +D +F
Sbjct: 120 HAYSCDEIIWGGHFVDVFTTLPDGRRALDLGKFHEIA 156
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 66.2 bits (161), Expect = 4e-14
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 175 SDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCV 234
D + L+ W T+ T +++T LFA+ + +
Sbjct: 13 DDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIEN----------------- 55
Query: 235 TGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKL 294
F +F FS++T + GYG IP P A LV+++++ G+L A+ +I+A+
Sbjct: 56 ARPGSFTDAFFFSVQTMATIGYGKLIP--IGPLANTLVTLEALCGMLGLAVAASLIYARF 113
Query: 295 AKP 297
+P
Sbjct: 114 TRP 116
Score = 35.3 bits (81), Expect = 0.003
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 99 SDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNYTL 147
D + L+ W T+ T +++T LFA+ + ++ +
Sbjct: 13 DDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSF 61
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 65.0 bits (158), Expect = 1e-13
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 19/122 (15%)
Query: 175 SDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCV 234
D + ++ W + FV+ LFA+ + + +
Sbjct: 14 RDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIAN----------------- 56
Query: 235 TGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKL 294
F+ +F FS+ET + GY + A + +++ G+ AL+ G++FA+
Sbjct: 57 QSPPGFVGAFFFSVETLATVGY--GDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF 114
Query: 295 AK 296
A+
Sbjct: 115 AR 116
Score = 36.1 bits (83), Expect = 0.002
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 99 SDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIA 136
D + ++ W + FV+ LFA+ + +
Sbjct: 14 RDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGD 51
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 30.7 bits (69), Expect = 0.082
Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 20/118 (16%)
Query: 185 RWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSF 244
WR L V+ L + + + + +
Sbjct: 4 HWRAAGAATVL-LVIVLLAGSYLAVLAERGAPG-----------------AQLITYPRAL 45
Query: 245 LFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQ 302
+S+ET + GYG P T + + + G+ L + ++ +
Sbjct: 46 WWSVETATTVGYGDLYPVT--LWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERR 101
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 28.1 bits (63), Expect = 0.46
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 239 DFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKL 294
+ S ++ T + GYG P+T P ++ + G+ A+ + L
Sbjct: 27 SWTVSLYWTFVTIATVGYGDYSPST--PLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 25.7 bits (56), Expect = 7.5
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 3 PILPIEEVDTEEEFTEEEEGECFFSV 28
PI+ + E + + T EE+ E F +
Sbjct: 8 PIVSLPEQEIK---TLEEDEEELFKM 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.434
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,687,775
Number of extensions: 78024
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 20
Length of query: 434
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,199,356
Effective search space: 414977176
Effective search space used: 414977176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.2 bits)