Query psy16727
Match_columns 210
No_of_seqs 149 out of 993
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 20:28:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksd_A Aerobic respiration con 68.9 1.5 5E-05 32.5 0.9 74 15-91 3-76 (115)
2 1smz_A Transportan in bicellar 46.1 4.2 0.00014 21.9 -0.0 7 4-10 1-7 (27)
3 1xrd_A LH-1, light-harvesting 19.8 1.1E+02 0.0036 19.2 3.1 25 63-87 6-31 (52)
4 4gnt_B Carbohydrate-responsive 15.9 20 0.00069 18.9 -0.8 7 2-8 11-17 (26)
5 2vqc_A Hypothetical 13.2 kDa p 9.5 76 0.0026 22.4 0.4 27 47-75 31-57 (118)
6 2qho_B E3 ubiquitin-protein li 8.4 2.8E+02 0.0097 17.1 2.6 19 123-141 17-35 (53)
7 3ajf_A Non-structural protein 7.1 2.3E+02 0.0078 19.5 1.9 25 152-179 60-84 (94)
8 1k3k_A Functional anti-apoptot 7.0 5.9E+02 0.02 19.1 4.5 16 64-79 81-96 (158)
9 3mp7_B Preprotein translocase 6.2 4.7E+02 0.016 16.6 3.0 28 61-88 24-52 (61)
10 2ksf_A Sensor protein KDPD; me 6.2 1.7E+02 0.0058 20.5 0.9 17 157-173 62-78 (107)
No 1
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=68.89 E-value=1.5 Score=32.51 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHhhchhhhhhchhhhHHHHHHHHHHHHhhhhcCCCCCccchhhHHHHHHHhhhhchhhhHHHHHH
Q psy16727 15 KIQEVGVYIASLMGLGDVIAQSLAVHNFTSLMGLGDVIAQTFIDGKQLTQINPMRTLQYSVVGLVVGPTVGKWYRIL 91 (210)
Q Consensus 15 ~~~~~~~y~~~~l~~~Pl~tk~~~~~ts~~l~~~gD~laQ~i~~~~~~~~~D~~R~~r~~~~G~~~gP~~h~wy~~L 91 (210)
+++.|+.||-+.+.|-=.+.=++ -++++..+-+++.|.+...--.+..++.-..|..+||.+.+|+.-|++..+
T Consensus 3 ~~k~~aq~yvd~v~rlG~~rfSl---L~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli~aP~viYFls~v 76 (115)
T 2ksd_A 3 QIRLLAQYYVDLMMKLGLVRFSM---LLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGLLITPWAVYFLSVV 76 (115)
T ss_dssp ------------CCCSSTTSSCC---SHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCSTTTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHhHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888887777777777777 788888888899998754211123444555566778888999999988765
No 2
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=46.09 E-value=4.2 Score=21.90 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=5.4
Q ss_pred ccccchh
Q psy16727 4 RYYLGTY 10 (210)
Q Consensus 4 ~~~~~~~ 10 (210)
||||||+
T Consensus 1 GWTLNSA 7 (27)
T 1smz_A 1 GWTLNSA 7 (27)
T ss_dssp CCSHHHH
T ss_pred Ccccccc
Confidence 7888874
No 3
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=19.83 E-value=1.1e+02 Score=19.24 Aligned_cols=25 Identities=12% Similarity=0.006 Sum_probs=16.6
Q ss_pred CccchhhHHHHHHHhhh-hchhhhHH
Q psy16727 63 TQINPMRTLQYSVVGLV-VGPTVGKW 87 (210)
Q Consensus 63 ~~~D~~R~~r~~~~G~~-~gP~~h~w 87 (210)
-.+|++|++.-.....+ .+-..|+-
T Consensus 6 l~fDPrr~Lva~~~fl~vlAl~IHfi 31 (52)
T 1xrd_A 6 QLFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp GTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchhHHHHHHHHHHHHHHHHHHHH
Confidence 35899998655444444 77777775
No 4
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=15.91 E-value=20 Score=18.88 Aligned_cols=7 Identities=43% Similarity=1.521 Sum_probs=4.8
Q ss_pred ccccccc
Q psy16727 2 WRRYYLG 8 (210)
Q Consensus 2 ~~~~~~~ 8 (210)
||.|+.+
T Consensus 11 wrawyiq 17 (26)
T 4gnt_B 11 WRAWYIQ 17 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 5
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=9.51 E-value=76 Score=22.35 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=18.8
Q ss_pred HHHHHHHhhhhcCCCCCccchhhHHHHHH
Q psy16727 47 GLGDVIAQTFIDGKQLTQINPMRTLQYSV 75 (210)
Q Consensus 47 ~~gD~laQ~i~~~~~~~~~D~~R~~r~~~ 75 (210)
.+-|++||.-.+.. ..|+..|++++.+
T Consensus 31 sledilaqfeis~~--sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVP--SAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHH--HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc--hHhHHHHHHHHHH
Confidence 46899999744332 3488889998764
No 6
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=8.44 E-value=2.8e+02 Score=17.08 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.5
Q ss_pred HHhhcCCCHHHHHHHHHhh
Q psy16727 123 LNLLQGLSWDEAVTKVQNS 141 (210)
Q Consensus 123 ~~~leg~~~~~~~~~lk~~ 141 (210)
..+++|+|.+-+++++++.
T Consensus 17 q~VLqgksR~vIirELqrT 35 (53)
T 2qho_B 17 QVVLQGKSRSVIIRELQRT 35 (53)
T ss_dssp HHHSTTCCHHHHHHHHHHT
T ss_pred HHHhcCCcHHHHHHHHHHh
Confidence 4578999988899988764
No 7
>3ajf_A Non-structural protein 3; RNA silencing suppression, negative strand RNA virus, viral; 2.00A {Rice hoja blanca virus}
Probab=7.09 E-value=2.3e+02 Score=19.48 Aligned_cols=25 Identities=28% Similarity=0.483 Sum_probs=18.7
Q ss_pred cchHHHhhhhhcccccchhHHHHHHHHH
Q psy16727 152 IWPAVQVVNFYFIPIQYRVLLVQAVAVV 179 (210)
Q Consensus 152 vWp~~q~iNF~~VP~~~Rvlf~n~v~~~ 179 (210)
+|...+==| .|.+||++..++++..
T Consensus 60 IWiLsHdrd---lP~~yRlP~t~lvS~y 84 (94)
T 3ajf_A 60 IWMLSHKRD---LPGHYRLPLTCLVSTY 84 (94)
T ss_dssp HHHHHTCTT---CCGGGHHHHHHHHHHH
T ss_pred HHHhhcCCC---CCccccccHHHHHHHH
Confidence 466655444 6999999999998754
No 8
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=7.02 E-value=5.9e+02 Score=19.08 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.7
Q ss_pred ccchhhHHHHHHHhhh
Q psy16727 64 QINPMRTLQYSVVGLV 79 (210)
Q Consensus 64 ~~D~~R~~r~~~~G~~ 79 (210)
.++|.|.+.+..||..
T Consensus 81 ~iNWGRIVaLfaF~g~ 96 (158)
T 1k3k_A 81 NMNWGRALAILTFGSF 96 (158)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3899999999988875
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=6.21 E-value=4.7e+02 Score=16.55 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=21.5
Q ss_pred CCCccchhhHHHHHHHhhh-hchhhhHHH
Q psy16727 61 QLTQINPMRTLQYSVVGLV-VGPTVGKWY 88 (210)
Q Consensus 61 ~~~~~D~~R~~r~~~~G~~-~gP~~h~wy 88 (210)
+++.=++.++++....|++ +|-+.+.-+
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567899999999999 988876544
No 10
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=6.19 E-value=1.7e+02 Score=20.51 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=12.0
Q ss_pred HhhhhhcccccchhHHH
Q psy16727 157 QVVNFYFIPIQYRVLLV 173 (210)
Q Consensus 157 q~iNF~~VP~~~Rvlf~ 173 (210)
-.+||.|+||.+..-..
T Consensus 62 l~~nffF~~P~~sf~i~ 78 (107)
T 2ksf_A 62 VSFDLFFIAPRGTLAVS 78 (107)
T ss_dssp HHHHHTTSCSSCTTCSS
T ss_pred HHHHHhhcCCCcccccc
Confidence 35688888888766543
Done!