Query psy16727
Match_columns 210
No_of_seqs 149 out of 993
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 20:28:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16727.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16727hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 27.0 34 0.0025 24.1 4.2 69 7-79 24-96 (146)
2 d1xrda1 f.3.1.1 (A:1-52) Light 24.8 35 0.0025 19.9 3.1 25 63-87 6-31 (52)
3 d1xmea1 f.24.1.1 (A:14-562) Ba 16.9 1.4E+02 0.01 25.1 6.9 40 170-209 463-503 (549)
4 d1h2vc1 a.118.1.14 (C:29-290) 16.0 1.8E+02 0.013 21.6 6.8 69 98-166 37-114 (262)
5 d2vqca1 a.4.5.78 (A:4-73) F-11 15.8 18 0.0013 21.9 0.4 27 47-75 22-48 (70)
6 d2ahra1 a.100.1.10 (A:153-256) 9.9 2.2E+02 0.016 18.1 6.2 28 80-109 12-46 (104)
7 d1yqga1 a.100.1.10 (A:153-263) 9.2 2.4E+02 0.017 18.1 5.6 32 77-110 10-49 (111)
8 d3e46a1 a.5.2.1 (A:157-198) Ub 8.7 52 0.0038 17.8 0.8 13 197-209 19-31 (42)
9 d2v9va1 a.4.5.35 (A:377-437) C 8.5 78 0.0057 18.1 1.6 21 50-72 5-25 (61)
10 d3ct6a1 c.54.1.2 (A:1-123) PTS 7.6 1.7E+02 0.013 19.3 3.5 32 110-141 88-119 (123)
No 1
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=26.97 E-value=34 Score=24.12 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=43.3
Q ss_pred cchhhhhhhhHHHHHHHHHHHhhchhhhhhc----hhhhHHHHHHHHHHHHhhhhcCCCCCccchhhHHHHHHHhhh
Q psy16727 7 LGTYLVSRKIQEVGVYIASLMGLGDVIAQSL----AVHNFTSLMGLGDVIAQTFIDGKQLTQINPMRTLQYSVVGLV 79 (210)
Q Consensus 7 ~~~~l~~~~~~~~~~y~~~~l~~~Pl~tk~~----~~~ts~~l~~~gD~laQ~i~~~~~~~~~D~~R~~r~~~~G~~ 79 (210)
..|+|.++-.+...+.....+++|...-+-+ -++........+.++.+....+ ..+|.|.+.+..||..
T Consensus 24 ~~e~l~~p~~~tik~~v~~i~~kh~~~F~~ml~~L~i~~~~~~~~f~~V~~elF~DG----~~NWGRIVaLfaFg~~ 96 (146)
T d1k3ka_ 24 EPEYLYHPLLSPIKLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDG----NMNWGRALAILTFGSF 96 (146)
T ss_dssp CCSSCCCSSCSHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHTHHHHHCSSC----SCCHHHHHHHHHHHHH
T ss_pred chHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHH
Confidence 3566777777777777777788887643333 1122233444555555554443 3799999999998875
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=24.84 E-value=35 Score=19.92 Aligned_cols=25 Identities=12% Similarity=0.006 Sum_probs=16.8
Q ss_pred CccchhhHHHHHHHhhh-hchhhhHH
Q psy16727 63 TQINPMRTLQYSVVGLV-VGPTVGKW 87 (210)
Q Consensus 63 ~~~D~~R~~r~~~~G~~-~gP~~h~w 87 (210)
.-+|++|++.-.....+ .+-..|+-
T Consensus 6 ~~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 6 QLFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp GTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899998765555555 67777764
No 3
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=16.94 E-value=1.4e+02 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHhhhcCccccccch-hHHHHhhccCC
Q psy16727 170 VLLVQAVAVVWNTYLSWKLNSTTVEATLT-SALAKELTSKS 209 (210)
Q Consensus 170 vlf~n~v~~~Wn~yLS~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (210)
+++...+-+++|.+.|..+.++..+.+.+ -.++++++||.
T Consensus 463 i~~~g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~ 503 (549)
T d1xmea1 463 VLLVALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPE 503 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCCCC
Confidence 46777788999999999887764433222 23445566653
No 4
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.00 E-value=1.8e+02 Score=21.61 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCHH---HHHHHHHhhhHHHHhhcc------ccchHHHhhhhhcccc
Q psy16727 98 EAVVKKVLTDQLIFSPVFIAILVTSLNLLQGLSWD---EAVTKVQNSYFDILLTGY------QIWPAVQVVNFYFIPI 166 (210)
Q Consensus 98 ~~~l~Kvl~Dq~v~~P~~~~~f~~~~~~leg~~~~---~~~~~lk~~~~~~~~~~~------~vWp~~q~iNF~~VP~ 166 (210)
+..+.+.+++...-.|..+..|-+..++++-+..+ ++.+++.+++-..+..+= .+--.++++|+..++.
T Consensus 37 ~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 37 KSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 67777888888888888888877778888766543 455555555555555431 1234566666665554
No 5
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=15.77 E-value=18 Score=21.86 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=18.7
Q ss_pred HHHHHHHhhhhcCCCCCccchhhHHHHHH
Q psy16727 47 GLGDVIAQTFIDGKQLTQINPMRTLQYSV 75 (210)
Q Consensus 47 ~~gD~laQ~i~~~~~~~~~D~~R~~r~~~ 75 (210)
.+-|++||.-.+.. ..++.+|++++..
T Consensus 22 ~ledilaqfeis~~--~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP--SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH--HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc--hHhHHHHHHHHHH
Confidence 45899999743332 3488899988754
No 6
>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}
Probab=9.93 E-value=2.2e+02 Score=18.10 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=15.1
Q ss_pred hchhhhHHHHHHHHhhch-------HHHHHHHHHhhh
Q psy16727 80 VGPTVGKWYRILEGIYGK-------EAVVKKVLTDQL 109 (210)
Q Consensus 80 ~gP~~h~wy~~Ld~~~p~-------~~~l~Kvl~Dq~ 109 (210)
+||. |+|.++|.+... +....+++.+-+
T Consensus 12 SGPA--f~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~ 46 (104)
T d2ahra1 12 SSPA--YIYLFIEALAKAGVKNGIPKAKALEIVTQTV 46 (104)
T ss_dssp THHH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ChHH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7776 566666655422 444455555443
No 7
>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
Probab=9.25 E-value=2.4e+02 Score=18.10 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=17.3
Q ss_pred hhh-hchhhhHHHHHHHHhhch-------HHHHHHHHHhhhh
Q psy16727 77 GLV-VGPTVGKWYRILEGIYGK-------EAVVKKVLTDQLI 110 (210)
Q Consensus 77 G~~-~gP~~h~wy~~Ld~~~p~-------~~~l~Kvl~Dq~v 110 (210)
+.. +||. |+|.+++.+... .....+++.+.+.
T Consensus 10 al~GSGPA--y~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~ 49 (111)
T d1yqga1 10 GISGSGPA--YVFYLLDALQNAAIRQGFDMAEARALSLATFK 49 (111)
T ss_dssp HHTTSHHH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcCchHH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344 7887 466666655422 4455555554433
No 8
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.73 E-value=52 Score=17.77 Aligned_cols=13 Identities=38% Similarity=0.296 Sum_probs=9.2
Q ss_pred chhHHHHhhccCC
Q psy16727 197 LTSALAKELTSKS 209 (210)
Q Consensus 197 ~~~~~~~~~~~~~ 209 (210)
.+++.-.+|||||
T Consensus 19 ~knavi~alssks 31 (42)
T d3e46a1 19 DRNAVIVALSSKS 31 (42)
T ss_dssp CHHHHHHHHHHTT
T ss_pred cccceeeeeccCc
Confidence 3466667888886
No 9
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=8.46 E-value=78 Score=18.14 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=14.5
Q ss_pred HHHHhhhhcCCCCCccchhhHHH
Q psy16727 50 DVIAQTFIDGKQLTQINPMRTLQ 72 (210)
Q Consensus 50 D~laQ~i~~~~~~~~~D~~R~~r 72 (210)
.++||.+.+.+ +.+||...+.
T Consensus 5 kilaqiiqehr--egldwqeaat 25 (61)
T d2v9va1 5 KILAQIIQEHR--EGLDWQEAAT 25 (61)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHH
T ss_pred HHHHHHHHHHH--ccCcHHHHHH
Confidence 47899998876 3477775543
No 10
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=7.56 E-value=1.7e+02 Score=19.33 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHhhcCCCHHHHHHHHHhh
Q psy16727 110 IFSPVFIAILVTSLNLLQGLSWDEAVTKVQNS 141 (210)
Q Consensus 110 v~~P~~~~~f~~~~~~leg~~~~~~~~~lk~~ 141 (210)
+-+|+--..+-....+..|.+++++.+++++-
T Consensus 88 i~~p~tegal~Aa~~a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 88 FNVPLIEGAYTASALLEAGATFEAIKEQLEKM 119 (123)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCHHHHHHHHGGG
T ss_pred EcCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 55788788888888888999999999998764
Done!