RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16727
         (210 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 26/97 (26%)

Query: 61  QLTQINPMRTLQYSVVGLVVGPTVGKWYRILEGIYGKEAVVKKVLTDQLIFSPVFIAILV 120
            + Q+       Y V   ++G T G+    L+G  G     + ++T       V IA   
Sbjct: 242 GVIQL-----AHYVVTAKLLGFTPGELRSYLKGATG---HSQGLVT------AVAIA--- 284

Query: 121 TSLNLLQGLSWD---EAVTKVQNSYFDILLTGYQIWP 154
                 +  SW+    +V K     F I +  Y+ +P
Sbjct: 285 ------ETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315



 Score = 28.9 bits (64), Expect = 1.5
 Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 68/165 (41%)

Query: 16   IQEVGVYIASLMGLGDVIAQSLAVHN--------FTSLMG--LGDVIAQTFIDGKQLTQI 65
             QE G      MG+ D+   S A  +        F    G  + D++             
Sbjct: 1626 SQEQG------MGM-DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN----------- 1667

Query: 66   NPMRTLQYSVVGLVV--GPTVGKWYR------ILEGIYGKEAVVKKVLTD------QLIF 111
            NP+         L +  G   GK  R      I E I   +   +K+  +         F
Sbjct: 1668 NPVN--------LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719

Query: 112  S-------------PVFIAILVTSLNLLQGLSWDEAVTKVQNSYF 143
                          P   A+ +      + L   + +    ++ F
Sbjct: 1720 RSEKGLLSATQFTQP---ALTLMEKAAFEDL-KSKGL-IPADATF 1759


>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary
          complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo
          sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A*
          1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A*
          3had_A* 2hdh_A* 3hdh_A*
          Length = 302

 Score = 27.5 bits (62), Expect = 3.5
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 13 SRKIQEVGVYIASLMGLGDVIAQSLAVHNFTSLM 46
             ++ V V    LMG G  IAQ  A    T ++
Sbjct: 12 KIIVKHVTVIGGGLMGAG--IAQVAAATGHTVVL 43


>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
          PSI, protein structure initiative, NYSG oxidoreductase;
          2.20A {Escherichia coli}
          Length = 483

 Score = 26.9 bits (60), Expect = 5.0
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 13 SRKIQEVGVYIASLMGLGDVIAQSLAVHNFTSLM 46
          S  +Q V V  +  MG G  IA+  A H    L+
Sbjct: 2  SLNVQTVAVIGSGTMGAG--IAEVAASHGHQVLL 33


>1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein,
           jelly roll, viral beta barrel, viral protein; 1.65A
           {Enterobacteria phage PRD1} SCOP: b.121.2.1 b.121.2.1
           PDB: 1gw7_A 1gw8_A 1hb5_A 1hb7_A 1hb9_A 1hqn_A 1cjd_A
           1w8x_A
          Length = 394

 Score = 26.3 bits (57), Expect = 9.1
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 67  PMRTLQYSVVGLVVGP-TVGKWYRILEG 93
           P+ TLQY  VG VV P TV +  R+L G
Sbjct: 348 PIYTLQYGNVGFVVNPKTVNQNARLLMG 375


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,172,992
Number of extensions: 184376
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 5
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)