RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16727
         (210 letters)



>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha
          subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
          Length = 186

 Score = 29.1 bits (64), Expect = 0.29
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 13 SRKIQEVGVYIASLMGLGDVIAQSLAVHNFTSLM 46
          ++ +++  V  A +MG G  IA   A      LM
Sbjct: 1  AKDVKQAAVLGAGIMGGG--IAYQSASKGTPILM 32


>d1hx6a2 b.121.2.1 (A:245-384) Coat protein p3 {Bacteriophage prd1
           [TaxId: 10658]}
          Length = 140

 Score = 26.6 bits (58), Expect = 1.7
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 67  PMRTLQYSVVGLVVGP-TVGKWYRILEG 93
           P+ TLQY  VG VV P TV +  R+L G
Sbjct: 105 PIYTLQYGNVGFVVNPKTVNQNARLLMG 132


>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId:
           9940]}
          Length = 309

 Score = 25.9 bits (56), Expect = 4.3
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 114 VFIAILVTSLNLLQGLSWDEAVTKVQNSYFDILLTGYQIWPAVQVVNFYFIPIQYRVLLV 173
           +F A+L+         +   A  K  ++   +L    +   A         P Q  + +V
Sbjct: 233 LFAAMLLAWT-HKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMV 291

Query: 174 QA 175
           Q+
Sbjct: 292 QS 293


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 754,060
Number of extensions: 32571
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 4
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)