BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16729
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QZ6|A Chain A, First Crystal Structure Of A Psychrophile Class C Beta-
Lactamase
Length = 358
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 142 IGAFCFSLLGLIFP-------VLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLA 188
+G + L L FP +I + +W F PG R++ N + +FG LA
Sbjct: 105 LGTYTAGGLPLQFPEESDNTGKMISYYQHWKPAFAPGTQRLYSNPSIGLFGHLA 158
>pdb|1JZT|A Chain A, Crystal Structure Of Yeast Ynu0, Ynl200c
pdb|1JZT|B Chain B, Crystal Structure Of Yeast Ynu0, Ynl200c
Length = 246
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 121 IVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGP 170
IV A G + P PF G++ C + +I V ++ T WDV GP
Sbjct: 136 IVDAIFGFSFKPPXREPFKGIVEELC-KVQNIIPIVSVDVPTGWDVDKGP 184
>pdb|3FN6|A Chain A, Crystal Structure Of Sortase A From Streptococcus Pyogenes
Serotype M1 Strain Sf370 With The Active Site Cys In Its
Sulphenic Acid Form
Length = 187
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 33 QGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFF 92
+G+G +IY G +K ++ Y+L H I GI F
Sbjct: 49 KGLGNTELIY----GAGTMKEEQVMGGENNYSLASHHI--------FGITGSSQM---LF 93
Query: 93 VCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIG 136
LE NG+ K K YEYI++ V A + V T G
Sbjct: 94 SPLERAQNGMSIYLTDKEKIYEYIIKDVFTVAPERVDVIDDTAG 137
>pdb|3FN5|A Chain A, Crystal Structure Of Sortase A (Spy1154) From
Streptococcus Pyogenes Serotype M1 Strain Sf370
pdb|3FN5|B Chain B, Crystal Structure Of Sortase A (Spy1154) From
Streptococcus Pyogenes Serotype M1 Strain Sf370
pdb|3FN7|A Chain A, Crystal Structure Of Sortase A (Spy1154) From
Streptococcus Pyogenes Serotype M1 Strain Sf370
Length = 187
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 33 QGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFF 92
+G+G +IY G +K ++ Y+L H I GI F
Sbjct: 49 KGLGNTELIY----GAGTMKEEQVMGGENNYSLASHHI--------FGITGSSQM---LF 93
Query: 93 VCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIG 136
LE NG+ K K YEYI++ V A + V T G
Sbjct: 94 SPLERAQNGMSIYLTDKEKIYEYIIKDVFTVAPERVDVIDDTAG 137
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 51 LKYGELTEDNITYNLPQHEIAPQIANIAIG-IAVFCTFGLQFFVCLEIVWNGVKDNFVKK 109
+K G T+ + ++ + ++ ++ IG IA TF L F V ++V +GV D F+++
Sbjct: 325 IKAGGFTKGGLNFDAKVRRASYKVEDLFIGHIAGMDTFALGFKVAYKLVKDGVLDKFIEE 384
Query: 110 P--KFYEYIVRTVI 121
F E I R ++
Sbjct: 385 KYRSFREGIGRDIV 398
>pdb|4AED|C Chain C, Crystal Structure Of Human Enterovirus 71
Length = 242
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 27 LCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCT 86
LCG Q G + + ++ G ++ G++ I Y P + A +G V
Sbjct: 104 LCGYYTQWSGSLEVTFMFTG--SFMATGKML---IAYTPPGGPLPKDRATAMLGTHVIWD 158
Query: 87 FGLQFFVCLEIVW 99
FGLQ V L I W
Sbjct: 159 FGLQSSVTLVIPW 171
>pdb|3VBO|C Chain C, Crystal Structure Of Formaldehyde Treated Empty Human
Enterovirus 71 Particle (Cryo At 100k)
pdb|3VBR|C Chain C, Crystal Structure Of Formaldehyde Treated Empty Human
Enterovirus 71 Particle (Room Temperature)
pdb|3VBU|C Chain C, Crystal Structure Of Empty Human Enterovirus 71 Particle
Length = 239
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 27 LCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCT 86
LCG Q G + + ++ G ++ G++ I Y P + A +G V
Sbjct: 104 LCGYYTQWSGSLEVTFMFTG--SFMATGKML---IAYTPPGGPLPKDRATAMLGTHVIWD 158
Query: 87 FGLQFFVCLEIVW 99
FGLQ V L I W
Sbjct: 159 FGLQSSVTLVIPW 171
>pdb|3VBF|C Chain C, Crystal Structure Of Formaldehyde Treated Human
Enterovirus 71 (Space Group I23)
pdb|3VBH|C Chain C, Crystal Structure Of Formaldehyde Treated Human
Enterovirus 71 (Space Group R32)
pdb|3VBS|C Chain C, Crystal Structure Of Human Enterovirus 71
Length = 242
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 27 LCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCT 86
LCG Q G + + ++ G ++ G++ I Y P + A +G V
Sbjct: 104 LCGYYTQWSGSLEVTFMFTG--SFMATGKML---IAYTPPGGPLPKDRATAMLGTHVIWD 158
Query: 87 FGLQFFVCLEIVW 99
FGLQ V L I W
Sbjct: 159 FGLQSSVTLVIPW 171
>pdb|2DB6|A Chain A, Solution Structure Of Rsgi Ruh-051, A C1 Domain Of Stac3
From Human Cdna
Length = 74
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 103 KDNFVKKPKFYEYIVRTVIVTAAVGL 128
KD+F KKPKF + R +++ GL
Sbjct: 21 KDHFFKKPKFCDVCARMIVLNNKFGL 46
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
Length = 511
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 29 GVLNQGMGGVTMIYILLGFLGY-LKYGELTEDNITYNL 65
G L +G + M+Y +LG L Y LK+ L ED IT +
Sbjct: 95 GYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTI 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.146 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,596,545
Number of Sequences: 62578
Number of extensions: 318870
Number of successful extensions: 750
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 38
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)