Query psy16729
Match_columns 238
No_of_seqs 119 out of 1198
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 20:30:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 1.3E-40 2.9E-45 296.9 17.5 198 2-200 251-449 (449)
2 PTZ00206 amino acid transporte 100.0 1.1E-33 2.4E-38 259.6 13.2 197 2-201 266-465 (467)
3 PLN03074 auxin influx permease 100.0 8.2E-33 1.8E-37 253.7 16.0 200 2-206 243-457 (473)
4 KOG1303|consensus 100.0 2E-31 4.2E-36 240.7 16.8 196 1-202 237-436 (437)
5 PF01490 Aa_trans: Transmembra 100.0 4.3E-32 9.2E-37 244.4 0.9 197 1-197 201-408 (409)
6 KOG1305|consensus 99.9 1.9E-26 4.2E-31 207.2 15.9 197 1-203 203-408 (411)
7 KOG4303|consensus 99.9 1E-27 2.3E-32 205.2 4.4 201 2-209 312-523 (524)
8 COG0814 SdaC Amino acid permea 99.4 1.3E-11 2.8E-16 112.2 14.2 188 2-196 203-411 (415)
9 TIGR00837 araaP aromatic amino 98.7 2.2E-07 4.8E-12 83.4 11.7 156 4-166 190-360 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.5 3.7E-06 8.1E-11 76.1 13.6 179 2-189 194-391 (394)
11 PRK15132 tyrosine transporter 98.0 9.8E-05 2.1E-09 67.0 12.7 183 2-191 191-390 (403)
12 PRK10483 tryptophan permease; 97.9 0.00028 6.1E-09 64.1 13.0 157 2-165 202-373 (414)
13 TIGR00814 stp serine transport 97.7 0.00018 4E-09 65.2 8.3 177 2-186 196-396 (397)
14 PRK09664 tryptophan permease T 97.7 0.00087 1.9E-08 61.0 12.5 178 3-190 204-401 (415)
15 TIGR03813 put_Glu_GABA_T putat 97.6 0.0042 9.1E-08 57.5 16.5 49 3-54 205-254 (474)
16 PRK13629 threonine/serine tran 97.6 0.0014 3E-08 60.0 12.4 183 2-192 219-438 (443)
17 PRK10655 potE putrescine trans 97.3 0.023 5E-07 51.9 17.5 46 2-50 199-245 (438)
18 TIGR00909 2A0306 amino acid tr 97.3 0.013 2.8E-07 53.4 15.1 155 3-166 206-377 (429)
19 PRK10644 arginine:agmatin anti 97.2 0.031 6.6E-07 51.3 17.0 45 3-50 202-247 (445)
20 TIGR00908 2A0305 ethanolamine 97.1 0.015 3.3E-07 53.2 14.3 42 3-47 202-244 (442)
21 TIGR03810 arg_ornith_anti argi 97.1 0.03 6.6E-07 51.7 16.1 158 3-166 206-381 (468)
22 PF13520 AA_permease_2: Amino 96.8 0.04 8.6E-07 50.0 13.8 158 2-166 198-376 (426)
23 PRK10249 phenylalanine transpo 96.8 0.055 1.2E-06 49.9 14.6 45 2-49 219-264 (458)
24 PRK11387 S-methylmethionine tr 96.7 0.052 1.1E-06 50.2 14.3 46 2-50 216-262 (471)
25 PRK10197 gamma-aminobutyrate t 96.7 0.074 1.6E-06 48.9 15.0 158 2-165 191-368 (446)
26 TIGR00910 2A0307_GadC glutamat 96.7 0.073 1.6E-06 49.8 15.0 41 3-46 205-246 (507)
27 PRK10746 putative transport pr 96.6 0.076 1.6E-06 49.1 14.6 161 2-166 210-389 (461)
28 PRK11021 putative transporter; 96.6 0.23 5.1E-06 44.9 17.6 156 3-165 188-362 (410)
29 TIGR00913 2A0310 amino acid pe 96.6 0.11 2.3E-06 48.2 15.6 43 2-47 207-250 (478)
30 COG0531 PotE Amino acid transp 96.6 0.14 3E-06 46.8 16.2 50 3-55 212-262 (466)
31 TIGR00907 2A0304 amino acid pe 96.6 0.19 4.1E-06 46.6 17.1 49 3-54 228-277 (482)
32 PRK15049 L-asparagine permease 96.6 0.066 1.4E-06 50.1 13.9 158 2-165 230-406 (499)
33 PRK11357 frlA putative fructos 96.5 0.059 1.3E-06 49.4 12.9 43 3-48 206-249 (445)
34 KOG1287|consensus 96.4 0.04 8.7E-07 50.8 11.2 158 3-166 215-387 (479)
35 TIGR00905 2A0302 transporter, 96.4 0.25 5.3E-06 45.8 16.6 45 3-50 210-254 (473)
36 PRK10836 lysine transporter; P 96.4 0.18 3.8E-06 47.0 15.6 47 3-52 216-263 (489)
37 PRK11049 D-alanine/D-serine/gl 96.4 0.11 2.3E-06 48.1 14.1 45 2-49 221-266 (469)
38 TIGR00911 2A0308 L-type amino 96.3 0.075 1.6E-06 49.5 12.6 45 3-50 246-291 (501)
39 PRK10435 cadB lysine/cadaverin 96.3 0.39 8.5E-06 43.9 16.9 45 3-50 198-243 (435)
40 PRK15238 inner membrane transp 96.2 0.21 4.5E-06 46.6 14.9 44 3-49 222-266 (496)
41 PRK10238 aromatic amino acid t 96.2 0.25 5.4E-06 45.6 15.2 158 2-165 210-386 (456)
42 PRK10580 proY putative proline 96.1 0.25 5.4E-06 45.5 14.7 43 3-48 210-253 (457)
43 TIGR03428 ureacarb_perm permea 96.0 0.8 1.7E-05 42.4 17.7 50 2-54 223-273 (475)
44 TIGR00906 2A0303 cationic amin 96.0 0.14 3.1E-06 48.5 12.9 154 3-165 242-411 (557)
45 TIGR01773 GABAperm gamma-amino 96.0 0.23 4.9E-06 45.6 13.8 46 2-50 211-257 (452)
46 TIGR00930 2a30 K-Cl cotranspor 94.3 0.89 1.9E-05 46.0 13.0 41 4-47 292-333 (953)
47 TIGR00912 2A0309 spore germina 93.4 1.1 2.5E-05 39.6 11.0 153 2-165 189-354 (359)
48 COG1914 MntH Mn2+ and Fe2+ tra 87.6 23 0.00049 32.5 14.2 79 111-189 324-404 (416)
49 TIGR00796 livcs branched-chain 86.5 5.5 0.00012 36.0 9.1 25 134-162 323-347 (378)
50 PF00324 AA_permease: Amino ac 86.1 0.64 1.4E-05 43.0 3.0 51 2-55 210-261 (478)
51 KOG1286|consensus 84.5 6.1 0.00013 37.6 8.7 158 2-164 242-422 (554)
52 COG1457 CodB Purine-cytosine p 77.9 59 0.0013 30.1 14.2 134 10-153 212-350 (442)
53 KOG1289|consensus 77.1 69 0.0015 30.5 14.4 52 3-57 263-315 (550)
54 TIGR00800 ncs1 NCS1 nucleoside 69.5 82 0.0018 28.9 11.4 46 9-57 225-274 (442)
55 KOG4812|consensus 68.1 9.1 0.0002 32.2 4.3 85 119-207 160-257 (262)
56 PF07954 DUF1689: Protein of u 63.9 32 0.0007 26.9 6.4 67 140-209 33-100 (152)
57 COG1113 AnsP Gamma-aminobutyra 62.5 24 0.00053 32.6 6.3 159 3-164 214-388 (462)
58 PF05805 L6_membrane: L6 membr 62.0 23 0.00049 29.0 5.4 67 136-202 44-117 (195)
59 TIGR02358 thia_cytX probable h 56.5 1.5E+02 0.0033 26.6 16.2 128 10-151 191-320 (386)
60 TIGR00813 sss transporter, SSS 53.0 1.7E+02 0.0037 26.2 12.0 33 19-54 230-265 (407)
61 PRK11375 allantoin permease; P 49.4 2.3E+02 0.0049 26.5 11.1 19 135-153 373-391 (484)
62 COG3817 Predicted membrane pro 47.6 1.1E+02 0.0023 26.4 7.2 37 172-208 165-201 (313)
63 PRK10714 undecaprenyl phosphat 46.9 1.6E+02 0.0035 25.8 8.9 46 172-220 267-312 (325)
64 PRK11026 ftsX cell division AB 39.9 2.2E+02 0.0048 24.8 8.6 27 178-204 280-306 (309)
65 PRK00701 manganese transport p 39.1 3.1E+02 0.0068 25.3 16.2 43 112-158 347-391 (439)
66 PF01102 Glycophorin_A: Glycop 37.3 58 0.0013 24.6 3.8 30 178-207 65-94 (122)
67 PF00474 SSF: Sodium:solute sy 32.0 3.3E+02 0.0072 24.3 8.7 25 121-145 350-376 (406)
68 PHA03048 IMV membrane protein; 31.7 1.9E+02 0.0041 20.5 8.2 47 143-190 13-59 (93)
69 cd08766 Cyt_b561_ACYB-1_like P 31.2 1.9E+02 0.0041 22.4 6.0 63 30-94 42-104 (144)
70 PF03845 Spore_permease: Spore 27.7 1.5E+02 0.0031 25.7 5.5 50 4-56 187-236 (320)
71 PF11119 DUF2633: Protein of u 27.5 88 0.0019 20.4 2.9 33 18-50 1-35 (59)
72 PF10749 DUF2534: Protein of u 26.6 2.3E+02 0.0049 19.8 5.5 47 42-91 24-78 (85)
73 PHA02680 ORF090 IMV phosphoryl 26.2 2.4E+02 0.0052 19.9 6.5 49 141-190 11-61 (91)
74 PLN02680 carbon-monoxide oxyge 24.8 1.6E+02 0.0034 24.8 4.8 75 15-94 69-143 (232)
75 COG0833 LysP Amino acid transp 23.9 6.5E+02 0.014 24.1 14.6 157 2-164 244-427 (541)
76 PF05767 Pox_A14: Poxvirus vir 23.7 2.8E+02 0.006 19.8 7.9 50 143-193 13-63 (92)
77 COG3086 RseC Positive regulato 23.1 3.7E+02 0.008 21.0 6.4 62 147-214 77-138 (150)
78 PF04835 Pox_A9: A9 protein co 23.0 1.3E+02 0.0028 19.2 3.0 34 21-58 19-52 (54)
79 TIGR02230 ATPase_gene1 F0F1-AT 23.0 3E+02 0.0065 19.9 7.2 21 177-197 76-96 (100)
80 TIGR00439 ftsX putative protei 21.8 5.4E+02 0.012 22.4 8.7 27 178-204 280-306 (309)
81 PF01102 Glycophorin_A: Glycop 21.7 1.3E+02 0.0028 22.7 3.4 35 175-209 66-100 (122)
82 PF07760 DUF1616: Protein of u 21.7 5.2E+02 0.011 22.2 8.1 41 121-163 6-46 (287)
83 KOG2592|consensus 21.3 6.4E+02 0.014 23.1 9.1 33 115-147 114-151 (426)
84 PF02468 PsbN: Photosystem II 21.3 1.3E+02 0.0028 18.3 2.6 25 32-56 6-30 (43)
85 COG3949 Uncharacterized membra 21.2 6E+02 0.013 22.8 9.9 19 8-26 195-213 (349)
86 PRK15419 proline:sodium sympor 21.0 6.8E+02 0.015 23.3 15.4 18 38-55 281-298 (502)
87 PF09716 ETRAMP: Malarial earl 20.4 97 0.0021 21.6 2.3 38 14-54 42-79 (84)
No 1
>KOG1304|consensus
Probab=100.00 E-value=1.3e-40 Score=296.92 Aligned_cols=198 Identities=44% Similarity=0.792 Sum_probs=188.1
Q ss_pred CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGI 81 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~i 81 (238)
.|||||++++.|++++||+|++|...++|++.++.+++++|..+|++||+.|||++++.|+.|+|+ +++.+.+|+++++
T Consensus 251 ifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai 329 (449)
T KOG1304|consen 251 IFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAI 329 (449)
T ss_pred HHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHH
Confidence 489999999999999999999999777799999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHHH
Q psy16729 82 AVFCTFGLQFFVCLEIVWNGVKDNFV-KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEF 160 (238)
Q Consensus 82 ~ll~s~pl~~~p~~~~l~~~~~~~~~-~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~yl 160 (238)
.++++||+|++|+.+++|+.+.++.. ++.+|..+.+|..++.++.++|..+||++++++++||++++.+.+++|+++++
T Consensus 330 ~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel 409 (449)
T KOG1304|consen 330 AIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIEL 409 (449)
T ss_pred HHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHH
Confidence 99999999999999999999888776 44678889999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q psy16729 161 VTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDI 200 (238)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~i 200 (238)
+.++++.++..+|+.+.+.+++++|+++++.|||.+++++
T Consensus 410 ~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 410 ITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999886567789999999999999999999999999864
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.1e-33 Score=259.62 Aligned_cols=197 Identities=21% Similarity=0.327 Sum_probs=169.7
Q ss_pred CcccccceeeccchhhcCCCC--CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCC-CCCCcHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN--HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNL-PQHEIAPQIANIA 78 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~--~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~-~~~~~~~~i~~i~ 78 (238)
.|||+||..++++|+|||||+ |+.+ ++..++.+++++|..+|++||+.|||+++++++.|+ |.+++...+++++
T Consensus 266 ~faF~~h~~~~~i~~~M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~ 342 (467)
T PTZ00206 266 IFAYVFQITAYEVYMDMTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVG 342 (467)
T ss_pred HhhhhhhhhhHHHHHhhcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHH
Confidence 589999999999999999865 5554 778999999999999999999999999999999999 5667888999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHH
Q psy16729 79 IGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLI 158 (238)
Q Consensus 79 ~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~ 158 (238)
+.+.++++||++++|+|+.+++.+.++.++.+.|++...+..+++.++++|+.+|+++.+++++||++++.++|++|++|
T Consensus 343 ~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf 422 (467)
T PTZ00206 343 VLVKLFVSYALLGMACRNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALL 422 (467)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754433445567777777888888999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q psy16729 159 EFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIM 201 (238)
Q Consensus 159 yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii 201 (238)
|++....+..+..+|+.+.+++++++|+++.+.|||+++++.+
T Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 423 FMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9984211100123455688999999999999999999999876
No 3
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=8.2e-33 Score=253.69 Aligned_cols=200 Identities=20% Similarity=0.182 Sum_probs=172.1
Q ss_pred CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh--hhhhCCCCCCcHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED--NITYNLPQHEIAPQIANIAI 79 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~--~il~n~~~~~~~~~i~~i~~ 79 (238)
.|+|+||+++||+++|||||++|++ ++..+...++++|..+|+.||+.|||++++ +.+.|+|++ .+.+++++++
T Consensus 243 ~faf~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-~~~~~~~~~~ 318 (473)
T PLN03074 243 LYTFGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-GWRDAAVILM 318 (473)
T ss_pred HHHhcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-hHHHHHHHHH
Confidence 5899999999999999999999998 567899999999999999999999999864 456678863 4679999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHH
Q psy16729 80 GIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIE 159 (238)
Q Consensus 80 ~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~y 159 (238)
.++++.+||+++.|..+..|+.+..+ +++..+.|.++|+++++.++++|+.+|+|+++++++||++++.++|++|+++|
T Consensus 319 ~i~~~~sy~l~~~p~~~~~e~~~~~~-~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~ 397 (473)
T PLN03074 319 LIHQFITFGFACTPLYFVWEKAIGVH-DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAH 397 (473)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887775433 23445788999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC------------CCCcchHHHHhHHHHHH-HHHHHHHhHHHHHHHHHHHcCC
Q psy16729 160 FVTYWDVG------------FGPGNWRVWKNILVLIF-GVLALVFGTQTSIGDIMRAYMP 206 (238)
Q Consensus 160 l~~~~~~~------------~~~~~~~~~~~~~ii~~-Gi~~~v~gt~~si~~ii~~~~~ 206 (238)
++.++++. .++.+|..++|++++++ |+++++.|+|++++++++++++
T Consensus 398 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 398 MLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred HHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 99766531 11123356899999985 6666799999999999999987
No 4
>KOG1303|consensus
Probab=99.97 E-value=2e-31 Score=240.73 Aligned_cols=196 Identities=23% Similarity=0.383 Sum_probs=174.4
Q ss_pred CCcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHH
Q psy16729 1 MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIG 80 (238)
Q Consensus 1 ~~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~ 80 (238)
++|+|+||+++||||++||+|++|++ ++.+++.+++.+|..++++||++|||+++++++.|++++.++...+++++.
T Consensus 237 iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~ 313 (437)
T KOG1303|consen 237 IAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIV 313 (437)
T ss_pred eeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHH
Confidence 47999999999999999999999998 578999999999999999999999999999999999755789999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhhccCC---CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHH
Q psy16729 81 IAVFCTFGLQFFVCLEIVWNGVKDNFV---KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVL 157 (238)
Q Consensus 81 i~ll~s~pl~~~p~~~~l~~~~~~~~~---~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l 157 (238)
+|++.+|+++..|..+.+|+....+.+ ++..+.|.+.|+.+++.++++|+.+|+|+++++++||+...++++++|++
T Consensus 314 ~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~ 393 (437)
T KOG1303|consen 314 LHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCL 393 (437)
T ss_pred HHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875554 23446899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCcchHHHHhHHH-HHHHHHHHHHhHHHHHHHHHH
Q psy16729 158 IEFVTYWDVGFGPGNWRVWKNILV-LIFGVLALVFGTQTSIGDIMR 202 (238)
Q Consensus 158 ~yl~~~~~~~~~~~~~~~~~~~~i-i~~Gi~~~v~gt~~si~~ii~ 202 (238)
+|++.++.+++.. +| ..++.+ +++|++.++.+...+++++++
T Consensus 394 ~yl~~~k~~~~s~-~~--~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 394 MYLLIKKPKRFSP-KW--LLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHHhhhhhhhhH-HH--HHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999876654222 33 455555 788999999999898888775
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.97 E-value=4.3e-32 Score=244.41 Aligned_cols=197 Identities=27% Similarity=0.502 Sum_probs=175.2
Q ss_pred CCcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHH
Q psy16729 1 MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIG 80 (238)
Q Consensus 1 ~~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~ 80 (238)
++|+|.||+.+|++++|||+|+++++..++...++.+++++|..+|..||++|||+++++++.|+|++++...++++++.
T Consensus 201 ~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~ 280 (409)
T PF01490_consen 201 IIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLV 280 (409)
T ss_pred hhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccch
Confidence 47899999999999999999999773334789999999999999999999999999999999999987789999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhhcc---------CCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHH
Q psy16729 81 IAVFCTFGLQFFVCLEIVWNGVKDN---------FVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLG 151 (238)
Q Consensus 81 i~ll~s~pl~~~p~~~~l~~~~~~~---------~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~ 151 (238)
++++.+||++.+|.++.+++.+.++ .++.++++|..+|+.+++.+.++|+.+|+++++++++|+++++.++
T Consensus 281 i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~ 360 (409)
T PF01490_consen 281 ISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFIS 360 (409)
T ss_pred hhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHH
Confidence 9999999999999999999998753 1134457889999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHhccCCCCCcchH--HHHhHHHHHHHHHHHHHhHHHHH
Q psy16729 152 LIFPVLIEFVTYWDVGFGPGNWR--VWKNILVLIFGVLALVFGTQTSI 197 (238)
Q Consensus 152 fi~P~l~yl~~~~~~~~~~~~~~--~~~~~~ii~~Gi~~~v~gt~~si 197 (238)
|++|+++|++.+++++.+.+++. ...+++++++|++.++.|+++++
T Consensus 361 fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 361 FILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred HHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 99999999999877643232322 36688999999999999999876
No 6
>KOG1305|consensus
Probab=99.94 E-value=1.9e-26 Score=207.24 Aligned_cols=197 Identities=22% Similarity=0.309 Sum_probs=175.0
Q ss_pred CCcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcH------HHH
Q psy16729 1 MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIA------PQI 74 (238)
Q Consensus 1 ~~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~------~~i 74 (238)
++|||.||..+.++++|||||++.+.. .+.+.+...+.++|..+|.+||+.|||++.+|++.++|+.+.. ...
T Consensus 203 ~~faf~Ch~n~~~i~~El~~~s~~~i~-~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~ 281 (411)
T KOG1305|consen 203 FVFAFTCHSNVFPIYNELKDRSVKKIQ-RVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLC 281 (411)
T ss_pred hheeeeccccceeeeeeeeCchHHHHH-HHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHH
Confidence 579999999999999999999863332 3789999999999999999999999999999999999864433 478
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCC---CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHH
Q psy16729 75 ANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFV---KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLG 151 (238)
Q Consensus 75 ~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~---~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~ 151 (238)
++..+.++.+..+|++.+|+|..+++.+.+..+ +.++.+|.+++.+++..+.+.|+++|+++++++++||++++.++
T Consensus 282 vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~ 361 (411)
T KOG1305|consen 282 VRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSIS 361 (411)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhH
Confidence 999999999999999999999999888887665 34556889999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16729 152 LIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRA 203 (238)
Q Consensus 152 fi~P~l~yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~~ 203 (238)
|++|+++|++..++ +.+++...+...++|+..+++|+...+.++..+
T Consensus 362 FI~P~~~yl~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 362 FILPALYYLKASKK-----KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHhhheeecc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998765 245667889999999999999999999988864
No 7
>KOG4303|consensus
Probab=99.94 E-value=1e-27 Score=205.25 Aligned_cols=201 Identities=24% Similarity=0.399 Sum_probs=179.5
Q ss_pred CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGI 81 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~i 81 (238)
.|++..|--.|+++.+|++|++|+. ++.++.+...++-..+|.+||++|||.|+..|++|+|. +....+++++.++
T Consensus 312 VFsYTSqIFLP~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~ 387 (524)
T KOG4303|consen 312 VFSYTSQIFLPNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVV 387 (524)
T ss_pred EEeeeceeeccccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHH
Confidence 4677788888999999999999998 68999999999999999999999999999999999996 5678899999999
Q ss_pred HHHHhhhhhhHHHHHHHHhhhhccCCC-----------cchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHH
Q psy16729 82 AVFCTFGLQFFVCLEIVWNGVKDNFVK-----------KPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLL 150 (238)
Q Consensus 82 ~ll~s~pl~~~p~~~~l~~~~~~~~~~-----------~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l 150 (238)
..++|||+-++..++.+|+.++...|+ .-+-....+|+++++++.++|+++|+|..+++++|++.+..+
T Consensus 388 KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmL 467 (524)
T KOG4303|consen 388 KALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTML 467 (524)
T ss_pred HHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccH
Confidence 999999999999999999998765431 111234678999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCC
Q psy16729 151 GLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDS 209 (238)
Q Consensus 151 ~fi~P~l~yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~~~ 209 (238)
+|+.|++||+++.+++ ....++..+..++++|..+.+.|.|.+.+++++.+..+.+
T Consensus 468 sFiwP~lFHl~ik~~~---L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 468 SFIWPALFHLYIKEKT---LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred HHHHHHHHHHHHHHHh---hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 9999999999998875 3345678899999999999999999999999999977644
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.36 E-value=1.3e-11 Score=112.17 Aligned_cols=188 Identities=20% Similarity=0.150 Sum_probs=134.0
Q ss_pred CcccccceeeccchhhcCCCCC--CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNH--FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAI 79 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~--~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~ 79 (238)
.++|++|+.++++++||+++++ .+| +......+..++|..++..+|..+|+.+.++++++.++++. ........
T Consensus 203 vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~-~l~~~~~~ 278 (415)
T COG0814 203 VFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNIS-LLSALAGV 278 (415)
T ss_pred HhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHH-HHHHHHHh
Confidence 5899999999999999998875 666 68899999999999999999999999999999999986433 33333334
Q ss_pred HHHHHHhhhhhhHHHHHHHHh--------------hhhc-c-CC-CcchhHH--HHHHHHHHHHHHHHHHhcCChhHHHh
Q psy16729 80 GIAVFCTFGLQFFVCLEIVWN--------------GVKD-N-FV-KKPKFYE--YIVRTVIVTAAVGLAVAVPTIGPFLG 140 (238)
Q Consensus 80 ~i~ll~s~pl~~~p~~~~l~~--------------~~~~-~-~~-~~~~~~~--~~~r~~i~~~~~~lAi~iP~~~~v~~ 140 (238)
..+...+++.+.++.+..... ...+ + .+ ++..+.+ .......++.....+...|..+.+++
T Consensus 279 ~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 358 (415)
T COG0814 279 INSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIA 358 (415)
T ss_pred hcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 444446666666666543222 2221 1 11 1122333 34445555567777889999999999
Q ss_pred HhhhHHhhHHHHHHhHHHHHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHH
Q psy16729 141 LIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTS 196 (238)
Q Consensus 141 lvGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~s 196 (238)
.+|+.....+.++.|...+.+....+.+ +.++...++++++|+..+..-.+..
T Consensus 359 ~iga~i~~~ll~~~p~~~~~~~~~~~~~---~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 359 TIGAPIIPALLFIKPRKLIYKLPALKVY---GGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceeec---CCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988766543321 1111467888888988877665544
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.68 E-value=2.2e-07 Score=83.35 Aligned_cols=156 Identities=12% Similarity=0.039 Sum_probs=109.8
Q ss_pred ccccceeeccchhhcCCC-CCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh-------------CCCCCC
Q psy16729 4 GHLPDSQVMPLENNMQTP-NHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITY-------------NLPQHE 69 (238)
Q Consensus 4 af~g~~~~~~i~~~mk~p-~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~-------------n~~~~~ 69 (238)
+|+.|..++++.++++|| |+.+| ....+..+++++|..+........+.+.-.+... +.-.+.
T Consensus 190 ~fg~~~~i~~~~~~~~~~~k~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 266 (381)
T TIGR00837 190 SFGFHGNVPSLYKYYDGNVKKVKK---SILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSS 266 (381)
T ss_pred HHHcccccHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccch
Confidence 465667799999999755 45555 5779999999999988766665554322111111 111122
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChh-HHHhHhhhHHhh
Q psy16729 70 IAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIG-PFLGLIGAFCFS 148 (238)
Q Consensus 70 ~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~-~v~~lvGa~~~~ 148 (238)
+...+..++-.+.+..++.-.....+|.+.+.+.++.+++ +|.....+..+...++|.+.|+.. ..++..| +...
T Consensus 267 ~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~---~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~ 342 (381)
T TIGR00837 267 AIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKK---GRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAAT 342 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC---CCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHH
Confidence 3456677777788888888888888888776665433222 234455666677888899999977 8999999 7788
Q ss_pred HHHHHHhHHHHHHHhccC
Q psy16729 149 LLGLIFPVLIEFVTYWDV 166 (238)
Q Consensus 149 ~l~fi~P~l~yl~~~~~~ 166 (238)
.+.+++|++++++.++++
T Consensus 343 ~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 343 IWAVIIPALLAWKARKKF 360 (381)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 899999999999987653
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.47 E-value=3.7e-06 Score=76.09 Aligned_cols=179 Identities=17% Similarity=0.155 Sum_probs=117.2
Q ss_pred CcccccceeeccchhhcC-CCCCCccccchhhHHHHHHHHHHHHH--HHHH---------HHHhcCCchh--hhhhCCCC
Q psy16729 2 ANGHLPDSQVMPLENNMQ-TPNHFVGLCGVLNQGMGGVTMIYILL--GFLG---------YLKYGELTED--NITYNLPQ 67 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk-~p~~~~~~~~v~~~a~~~~~~~Y~~~--g~~g---------Y~~fG~~~~~--~il~n~~~ 67 (238)
.++|.-|.++|++.+.++ |++|.++ .......+..++|... .+.| -..-|+++.+ ..+.+..+
T Consensus 194 ~~Sf~f~~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (394)
T PF03222_consen 194 VFSFGFHNIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSG 270 (394)
T ss_pred HHHHHHHhhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcC
Confidence 367888999999999998 4556665 4667777777788764 3333 1122222221 23334443
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCC-hhHHHhHhhhHH
Q psy16729 68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPT-IGPFLGLIGAFC 146 (238)
Q Consensus 68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~-~~~v~~lvGa~~ 146 (238)
+.+....+.++-.+++.+||-=...-.+|.+.+.++.+. ....|............++|...|+ |...+++.| ..
T Consensus 271 s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~---~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~ 346 (394)
T PF03222_consen 271 SPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN---NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IG 346 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HH
Confidence 445566678888888888887777777888877765421 1223333444455667888998886 778999999 88
Q ss_pred hhHHHHHHhHHHHHHHhccCCCCCcchH----HHHhHHHHHHHHHHH
Q psy16729 147 FSLLGLIFPVLIEFVTYWDVGFGPGNWR----VWKNILVLIFGVLAL 189 (238)
Q Consensus 147 ~~~l~fi~P~l~yl~~~~~~~~~~~~~~----~~~~~~ii~~Gi~~~ 189 (238)
...+..++|.++.+|.+++++.. +|+ +....+++++|++..
T Consensus 347 ~~il~~ilP~~m~~~~r~~~~~~--~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 347 IAILLGILPALMVWKARKRKPKQ--PYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred HHHHHHHHHHHHHHHHHcccCCC--CeEEeCcHHHHHHHHHHHHHHH
Confidence 88999999999999988765422 232 344455555555443
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.02 E-value=9.8e-05 Score=67.02 Aligned_cols=183 Identities=12% Similarity=0.042 Sum_probs=119.3
Q ss_pred CcccccceeeccchhhcCCC-CCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCc----------hhhhhhCC---CC
Q psy16729 2 ANGHLPDSQVMPLENNMQTP-NHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELT----------EDNITYNL---PQ 67 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p-~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~----------~~~il~n~---~~ 67 (238)
.++|.=|+.+|++.+.+++. ++.+| +......+..++|+..=......-+.+. .++++..+ .+
T Consensus 191 ~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 267 (403)
T PRK15132 191 FTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVA 267 (403)
T ss_pred HHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHcc
Confidence 46888899999999998754 45555 5677888888888775444443333221 01222222 22
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCC-hhHHHhHhhhHH
Q psy16729 68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPT-IGPFLGLIGAFC 146 (238)
Q Consensus 68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~-~~~v~~lvGa~~ 146 (238)
+.+...++.+.-.+++..||-=......|.+.+.++++.+ ...|........+..+++|+..|+ |....++.|..
T Consensus 268 ~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~---~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~- 343 (403)
T PRK15132 268 SPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT---VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA- 343 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc---ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-
Confidence 3455566777777788888776666777888777654322 123555566777888999999997 67788888865
Q ss_pred hhHHHHHHhHHHHHHHhccCCCCCcch--HHHHhHHHHHHHHHHHHH
Q psy16729 147 FSLLGLIFPVLIEFVTYWDVGFGPGNW--RVWKNILVLIFGVLALVF 191 (238)
Q Consensus 147 ~~~l~fi~P~l~yl~~~~~~~~~~~~~--~~~~~~~ii~~Gi~~~v~ 191 (238)
...+.+++|.++-+|.++++..+..|- .+...++.+++|++..+.
T Consensus 344 ~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 344 LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 678999999999999876541111110 245566666677665543
No 12
>PRK10483 tryptophan permease; Provisional
Probab=97.88 E-value=0.00028 Score=64.12 Aligned_cols=157 Identities=12% Similarity=0.053 Sum_probs=105.8
Q ss_pred CcccccceeeccchhhcCC-CCCCccccchhhHHHHHHHHHHHHH--HHHHHH---------HhcCCchh--hhhhCCCC
Q psy16729 2 ANGHLPDSQVMPLENNMQT-PNHFVGLCGVLNQGMGGVTMIYILL--GFLGYL---------KYGELTED--NITYNLPQ 67 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~-p~~~~~~~~v~~~a~~~~~~~Y~~~--g~~gY~---------~fG~~~~~--~il~n~~~ 67 (238)
.++|.=|+.+|++.+.+++ +++.++ +......+..++|+.- .+.|-. .-|+++.. +.+.+..+
T Consensus 202 ~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~ 278 (414)
T PRK10483 202 LASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLN 278 (414)
T ss_pred HhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcC
Confidence 4678889999999999885 455555 6778888888888873 333311 12333211 11112222
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCC-hhHHHhHhhhHH
Q psy16729 68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPT-IGPFLGLIGAFC 146 (238)
Q Consensus 68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~-~~~v~~lvGa~~ 146 (238)
+.....+..++-.+++..||-=...-..|.+.+.++.+.+ ...|.....+..+-..++|...|+ |-.-+++.|..
T Consensus 279 ~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~---~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~- 354 (414)
T PRK10483 279 SRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS---AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA- 354 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc---cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-
Confidence 2344566777777788888876666777888777654332 123333444566778899999998 77899999977
Q ss_pred hhHHHHHHhHHHHHHHhcc
Q psy16729 147 FSLLGLIFPVLIEFVTYWD 165 (238)
Q Consensus 147 ~~~l~fi~P~l~yl~~~~~ 165 (238)
...+.-++|+++-++.+|+
T Consensus 355 ~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 355 ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5677789999999999865
No 13
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.67 E-value=0.00018 Score=65.17 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=112.9
Q ss_pred Ccccccceeeccchhh----cCCC----CCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh-------hhhh---
Q psy16729 2 ANGHLPDSQVMPLENN----MQTP----NHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED-------NITY--- 63 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~----mk~p----~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~-------~il~--- 63 (238)
.++|.+|+.+++...+ .++| +|.++ +...+..+..++|+..-+..-...+.+.-. +++.
T Consensus 196 ~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k---~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~ 272 (397)
T TIGR00814 196 VFSFNHSPIISSFAISYREEYGDKEFAERKCLR---IMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLA 272 (397)
T ss_pred HHHHHccccchHHHHHHHHHcCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHH
Confidence 4789999999999733 3323 23333 577888888888887766666666543211 1111
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC----CcchhHHHHHHHHHHHHHHHHHHhcCChhHH
Q psy16729 64 NLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV----KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPF 138 (238)
Q Consensus 64 n~~~~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~----~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v 138 (238)
|-.+......+..+.-.+++..||-=...-.+|.+...+.+. .+ ..++........++.+.++.+|..-|++-++
T Consensus 273 ~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~ 352 (397)
T TIGR00814 273 NHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSF 352 (397)
T ss_pred hhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 111223444556666667788888877778888888776321 11 1233445677778888999999999999999
Q ss_pred HhHhhhHHhhHHHHHHhHHHHHHHhccCCCCCcchHH-HHhHHHHHHHH
Q psy16729 139 LGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRV-WKNILVLIFGV 186 (238)
Q Consensus 139 ~~lvGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~~-~~~~~ii~~Gi 186 (238)
+.-+|+-....+.|++|...-.|.-.- +++|. ..++++++.|+
T Consensus 353 i~~~~gp~~a~i~~~~p~~~~~~v~~l-----~~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 353 IEALGGPIIAMILFLMPMYAIYKVPAL-----KKYRGRISNVFVTVIGL 396 (397)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHccHHH-----HHhCCCcchheeEeeec
Confidence 996666555678889999876665321 22332 34666666554
No 14
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.66 E-value=0.00087 Score=60.97 Aligned_cols=178 Identities=12% Similarity=0.089 Sum_probs=112.0
Q ss_pred cccccceeeccchhhcCCC-CCCccccchhhHHHHHHHHHHHH--HHHHH---------HHHhcCCchhhhh---hCCCC
Q psy16729 3 NGHLPDSQVMPLENNMQTP-NHFVGLCGVLNQGMGGVTMIYIL--LGFLG---------YLKYGELTEDNIT---YNLPQ 67 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p-~~~~~~~~v~~~a~~~~~~~Y~~--~g~~g---------Y~~fG~~~~~~il---~n~~~ 67 (238)
++|.=|+.+|++.+.+++. ++.++ .......+..++|.. .++.| -...|+++..-+. .+ .+
T Consensus 204 ~SFgfh~iIPsl~~y~~~d~~~~~k---aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~ 279 (415)
T PRK09664 204 ASFGFHGNIPSLIICYGKRKDKLIK---SVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQ 279 (415)
T ss_pred HhhhCCCcchHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-cc
Confidence 4676699999999998754 45555 345666666667754 33333 1223333333111 22 22
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCC-hhHHHhHhhhHH
Q psy16729 68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPT-IGPFLGLIGAFC 146 (238)
Q Consensus 68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~-~~~v~~lvGa~~ 146 (238)
+.+......+.-.+++..||-=......|.+.+.++.+..+ ..|.....+..+-..++|...|+ |-.-++..|..
T Consensus 280 ~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~~---~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~- 355 (415)
T PRK09664 280 HGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSH---GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC- 355 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-
Confidence 34556677777778888888766667778887776443221 23333444566778899999998 88899999997
Q ss_pred hhHHHHHHhHHHHHHHhccCCCCCcchH----HHHhHHHHHHHHHHHH
Q psy16729 147 FSLLGLIFPVLIEFVTYWDVGFGPGNWR----VWKNILVLIFGVLALV 190 (238)
Q Consensus 147 ~~~l~fi~P~l~yl~~~~~~~~~~~~~~----~~~~~~ii~~Gi~~~v 190 (238)
...+.-++|+++-++.+++.. ...++ +..-.+.+++|++..+
T Consensus 356 ~~il~~ilP~lM~~~~Rk~~~--~~~y~v~GG~~~l~~~~~~g~~ii~ 401 (415)
T PRK09664 356 ATIWAVIIPAVLAIKARKKFP--NQMFTVWGGNLIPAIVILFGITVIL 401 (415)
T ss_pred HHHHHHHHHHHHHHHHhcccC--CCCceeeCCHHHHHHHHHHHHHHHH
Confidence 567888999999999986521 11122 3445555556655543
No 15
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.60 E-value=0.0042 Score=57.48 Aligned_cols=49 Identities=8% Similarity=-0.028 Sum_probs=37.2
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYG 54 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG 54 (238)
++|.|-......-+|+|||+ +.++ ....+..++.++|......-....+
T Consensus 205 ~af~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 205 LFYAGMEMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHhchhHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 57788888888889999997 5776 5778889999999876655443333
No 16
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.57 E-value=0.0014 Score=59.99 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=116.3
Q ss_pred CcccccceeeccchhhcCC-----------CCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCch-----h--hhh-
Q psy16729 2 ANGHLPDSQVMPLENNMQT-----------PNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTE-----D--NIT- 62 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~-----------p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~-----~--~il- 62 (238)
.++|.=|+.+|++...+|+ ++|.++ ++..+..+..++|+..-+.+-..-+++.- . +++
T Consensus 219 v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~r---ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls 295 (443)
T PRK13629 219 VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQ---IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLS 295 (443)
T ss_pred HHHHhccccchHHHHHHHHHhccccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHH
Confidence 4678778999998888422 223333 67788888888888766655555543220 1 111
Q ss_pred ---hCCCCC--------CcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhc---cCC---CcchhHHHHHHHHHHHHH
Q psy16729 63 ---YNLPQH--------EIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKD---NFV---KKPKFYEYIVRTVIVTAA 125 (238)
Q Consensus 63 ---~n~~~~--------~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~---~~~---~~~~~~~~~~r~~i~~~~ 125 (238)
+.+++. ........+.-.+++..||-=...-.+|.+...+.+ +.+ ...+..+....+.+.+.+
T Consensus 296 ~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (443)
T PRK13629 296 YLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGST 375 (443)
T ss_pred HHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHH
Confidence 112221 123445556666677778776666778888777732 111 122344667778888899
Q ss_pred HHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHHHHHhccCCCCCcchH-HHHhHHHHHHHHHHHHHh
Q psy16729 126 VGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWR-VWKNILVLIFGVLALVFG 192 (238)
Q Consensus 126 ~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~-~~~~~~ii~~Gi~~~v~g 192 (238)
+.+|+.-|++-+++.-+|+-....+.|++|...-.|.-.- +++| +..++++++.|++....-
T Consensus 376 w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l-----~~yr~~~~n~fv~~~Gl~~i~~~ 438 (443)
T PRK13629 376 WVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSL-----AKYRGRLDNVFVTVIGLLTILNI 438 (443)
T ss_pred HHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHH-----HHhCCCchhHHHHHHHHHHHHHH
Confidence 9999999999999996666666778889999876665321 2233 234788888887765443
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=97.32 E-value=0.023 Score=51.93 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=37.3
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY 50 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY 50 (238)
.|+|.|-......-+|+|||+ +.++ .+..+..++.++|........
T Consensus 199 ~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 199 LWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 367888888899999999997 6777 577999999999988765443
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=97.26 E-value=0.013 Score=53.36 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=79.7
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC-c-h-----hhhhhCCCCCCcHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL-T-E-----DNITYNLPQHEIAPQI 74 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~-~-~-----~~il~n~~~~~~~~~i 74 (238)
|+|.|........+|+|||+ +.+| ....+..++.++|.............+ . + ..+..+.. .++...+
T Consensus 206 ~af~G~e~~~~~~~E~~~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 281 (429)
T TIGR00909 206 FAFIGFEAISTAAEEVKNPERDIPK---AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLI 281 (429)
T ss_pred HHHhhHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHH
Confidence 57778888889999999996 5566 467899999999998865544221110 0 0 01111111 1233344
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC--------CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhH
Q psy16729 75 ANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV--------KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAF 145 (238)
Q Consensus 75 ~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~--------~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~ 145 (238)
..+...+..+.+.--.+....+.+...-+++ .| +.+...+.++-.. +++.++ ....+++.+.++.+
T Consensus 282 ~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~~~-~~~~~~~~l~~~~~-- 356 (429)
T TIGR00909 282 LTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAALL-ASLVPLEGLAELTS-- 356 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHHHH-HHHcCHHHHHHHHH--
Confidence 5555555555555444433434444333222 22 1111122111111 111111 23355777766543
Q ss_pred HhhHHHHHHhHHHHHHHhccC
Q psy16729 146 CFSLLGLIFPVLIEFVTYWDV 166 (238)
Q Consensus 146 ~~~~l~fi~P~l~yl~~~~~~ 166 (238)
....+.|++.++-.+++++++
T Consensus 357 ~~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 357 IGTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 223577777777776666544
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.20 E-value=0.031 Score=51.31 Aligned_cols=45 Identities=9% Similarity=-0.020 Sum_probs=36.9
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY 50 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY 50 (238)
|+|.|-......-+|+|||+ +.++ ....+..++.++|..+...-.
T Consensus 202 ~af~G~e~~~~~aeE~k~P~r~iPr---ai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 202 WSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHhHHHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 67778888889999999996 5776 577899999999998876633
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.15 E-value=0.015 Score=53.18 Aligned_cols=42 Identities=10% Similarity=-0.084 Sum_probs=32.3
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGF 47 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~ 47 (238)
|+|.|.......-+|+|||+ +.++ ....+..++.++|...-.
T Consensus 202 ~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 202 WFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence 57778888888999999996 5676 466788878888876643
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.12 E-value=0.03 Score=51.73 Aligned_cols=158 Identities=12% Similarity=0.081 Sum_probs=80.4
Q ss_pred cccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCc----h----hhhhhCCCCCCcHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELT----E----DNITYNLPQHEIAPQI 74 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~----~----~~il~n~~~~~~~~~i 74 (238)
|+|.|-.....+.+|.|||++.++ ....+...+.++|..+.+..+...+++. + ..+.++.-. ++...+
T Consensus 206 ~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g-~~~~~~ 281 (468)
T TIGR03810 206 WVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVG-TWGAVL 281 (468)
T ss_pred HHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcc-hHHHHH
Confidence 556666666677788998888887 4678999999999998776554333211 0 111112211 223344
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhhc-cCC-------CcchhHHHH-HHHHHHHHHHHHHH-hcCChhHHHhHhhh
Q psy16729 75 ANIAIGIAVFCTFGLQFFVCLEIVWNGVKD-NFV-------KKPKFYEYI-VRTVIVTAAVGLAV-AVPTIGPFLGLIGA 144 (238)
Q Consensus 75 ~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~-~~~-------~~~~~~~~~-~r~~i~~~~~~lAi-~iP~~~~v~~lvGa 144 (238)
..+...++.+.+.--.+...-+.+...-++ ..| ++....+.+ +..++..+..++.. .-+.++.+.++.+.
T Consensus 282 i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~ 361 (468)
T TIGR03810 282 INIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS 361 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 555555555555444333333444333222 122 111122222 22222111111111 11235555554432
Q ss_pred HHhhHHHHHHhHHHHHHHhccC
Q psy16729 145 FCFSLLGLIFPVLIEFVTYWDV 166 (238)
Q Consensus 145 ~~~~~l~fi~P~l~yl~~~~~~ 166 (238)
...+.|.++++.++++++++
T Consensus 362 --~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 362 --AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred --HHHHHHHHHHHHHHHHHHhc
Confidence 35688999999998887554
No 22
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.80 E-value=0.04 Score=49.96 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=89.7
Q ss_pred CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh---hh---h----hCCCCCCcH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED---NI---T----YNLPQHEIA 71 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~---~i---l----~n~~~~~~~ 71 (238)
.|+|.|-.......+|+|| |+.++ ....+..++.++|......-....+++..+ +. . +... .++.
T Consensus 198 ~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 272 (426)
T PF13520_consen 198 FFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWL 272 (426)
T ss_dssp GGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTH
T ss_pred Hhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-cccc
Confidence 4788899999999999998 67777 577999999999999877666555543211 11 1 1111 2355
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC----CcchhH-HHHHHHHHHHHHHHHHH---hcC--ChhHHHh
Q psy16729 72 PQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV----KKPKFY-EYIVRTVIVTAAVGLAV---AVP--TIGPFLG 140 (238)
Q Consensus 72 ~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~----~~~~~~-~~~~r~~i~~~~~~lAi---~iP--~~~~v~~ 140 (238)
..+..+...+..+.+....+....+.+...-+++ .| +.++.+ -...-....+++.++.. ..| +++.+.+
T Consensus 273 ~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~ 352 (426)
T PF13520_consen 273 AIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVS 352 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHH
T ss_pred ccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5666666666666666666655556665555433 22 111111 01111122222222222 234 3445555
Q ss_pred HhhhHHhhHHHHHHhHHHHHHHhccC
Q psy16729 141 LIGAFCFSLLGLIFPVLIEFVTYWDV 166 (238)
Q Consensus 141 lvGa~~~~~l~fi~P~l~yl~~~~~~ 166 (238)
+. ++ ...+.++++.+.+++.++++
T Consensus 353 ~~-~~-~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 353 LS-SV-GYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp HH-HH-HTHHHHHHHHHHHHHTHHHS
T ss_pred HH-HH-HHHHHHHHHHHHHHHHhhhc
Confidence 33 33 34577888888888776654
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=96.76 E-value=0.055 Score=49.93 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=34.4
Q ss_pred CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLG 49 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~g 49 (238)
.|+|.|-......-+|+|||+| .++ ....+...+.++|......-
T Consensus 219 ~~af~G~e~~~~~a~E~~~P~k~iPr---ai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 219 MFSFGGLELIGITAAEARDPEKSIPK---AVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHHHcCHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3678888888899999999974 666 46678888888887754443
No 24
>PRK11387 S-methylmethionine transporter; Provisional
Probab=96.74 E-value=0.052 Score=50.21 Aligned_cols=46 Identities=2% Similarity=-0.015 Sum_probs=36.0
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY 50 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY 50 (238)
.|+|.|-......-+|+|||+ +.++ ....+..++.++|.......-
T Consensus 216 ~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~~ 262 (471)
T PRK11387 216 NFAFSGTELIGIAAGETENPAKVIPV---AIRTTIARLVIFFVGTVLVLA 262 (471)
T ss_pred HHHHcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 367888888899999999997 4666 466888888888988765443
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.72 E-value=0.074 Score=48.92 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=83.1
Q ss_pred CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCc-h-------hhhhhCCCCCCcHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELT-E-------DNITYNLPQHEIAP 72 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~-~-------~~il~n~~~~~~~~ 72 (238)
.|+|.|-.......+|+|||+| .++ ....+...+.++|......--.....+. + ....+.... ....
T Consensus 191 ~faf~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~ 266 (446)
T PRK10197 191 MFSFMGAEIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAK 266 (446)
T ss_pred HHHHhCHHHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHH
Confidence 3678888888899999999974 666 4567888888888886554322221111 0 012222321 2233
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC-------CcchhHHHHHHH-HHHHHHHHHHHhcC--ChhHHHhH
Q psy16729 73 QIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV-------KKPKFYEYIVRT-VIVTAAVGLAVAVP--TIGPFLGL 141 (238)
Q Consensus 73 ~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~-------~~~~~~~~~~r~-~i~~~~~~lAi~iP--~~~~v~~l 141 (238)
.+.++...+..+.+.--.+....+.+...-+++ .| ++....+.++-. ++..+..+.....| .++.++++
T Consensus 267 ~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~ 346 (446)
T PRK10197 267 LIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDS 346 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 445555555555555444444445554443322 22 111122222222 22222222222223 36667776
Q ss_pred hhhHHhhHHHHHHhHHHHHHHhcc
Q psy16729 142 IGAFCFSLLGLIFPVLIEFVTYWD 165 (238)
Q Consensus 142 vGa~~~~~l~fi~P~l~yl~~~~~ 165 (238)
.+... .+.++++++-+++++++
T Consensus 347 ~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 347 SGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHH
Confidence 65554 48888898888887653
No 26
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.69 E-value=0.073 Score=49.84 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=31.4
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLG 46 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g 46 (238)
|+|.|--.....-+|+|||+ ++++ .+..+..++.++|....
T Consensus 205 faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 205 GAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence 46777778888999999997 5777 46677777788886543
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=96.65 E-value=0.076 Score=49.09 Aligned_cols=161 Identities=8% Similarity=0.047 Sum_probs=83.8
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC-ch---h---hhhhCCCCCCcHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL-TE---D---NITYNLPQHEIAPQ 73 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~-~~---~---~il~n~~~~~~~~~ 73 (238)
.|+|.|...+...-+|+|||+ +.++ ....+...+.++|.......-.....+ .. + ....+... .....
T Consensus 210 ~faf~G~e~v~~~a~E~knP~k~iP~---Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~ 285 (461)
T PRK10746 210 VASYQGVELIGITAGEAKNPQVTLRS---AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAG 285 (461)
T ss_pred HHHhcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHH
Confidence 367888888889999999996 6666 456667777777877543332222211 10 0 01111111 12234
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC-------CcchhHH-HHHHHHHHHHHHHHHHhcCChhHHHhHhhh
Q psy16729 74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV-------KKPKFYE-YIVRTVIVTAAVGLAVAVPTIGPFLGLIGA 144 (238)
Q Consensus 74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~-------~~~~~~~-~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa 144 (238)
+.++...+..+.+.--.++...+.+...-+++ .| ++....+ .++......+...+....|+-+.+++.+-+
T Consensus 286 i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~ 365 (461)
T PRK10746 286 IINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYS 365 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44555555555554444444445554443322 22 1111122 222222222333344456766666665544
Q ss_pred HHh--hHHHHHHhHHHHHHHhccC
Q psy16729 145 FCF--SLLGLIFPVLIEFVTYWDV 166 (238)
Q Consensus 145 ~~~--~~l~fi~P~l~yl~~~~~~ 166 (238)
+++ ..+.++++++.|++.++++
T Consensus 366 ~~~~~~~i~w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 366 ASVLPGMVPWFVILISQLRFRRAH 389 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333 4688899999999887654
No 28
>PRK11021 putative transporter; Provisional
Probab=96.65 E-value=0.23 Score=44.94 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=80.4
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHH--HHHhcCCchh-----hhhhCC-CCCCcHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLG--YLKYGELTED-----NITYNL-PQHEIAPQ 73 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~g--Y~~fG~~~~~-----~il~n~-~~~~~~~~ 73 (238)
|+|.|.......-+|+|||+ +.++ ....+..++.++|......- ...++|...+ .+.+.. .+ +...
T Consensus 188 ~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~ 262 (410)
T PRK11021 188 WCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGG--YALW 262 (410)
T ss_pred HHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCc--hhHH
Confidence 67888889999999999996 6777 57799999999999976542 2222332111 111111 11 1122
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhc-cCC-------CcchhHHH-HHHHHHHHHHHHHH-HhcCChhHHHhHhh
Q psy16729 74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKD-NFV-------KKPKFYEY-IVRTVIVTAAVGLA-VAVPTIGPFLGLIG 143 (238)
Q Consensus 74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~-~~~-------~~~~~~~~-~~r~~i~~~~~~lA-i~iP~~~~v~~lvG 143 (238)
+..+...+..+.+.-..+....+.+...-++ ..| +++...+. ++...+.....++. ..-.+++++.++..
T Consensus 263 ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~ 342 (410)
T PRK11021 263 VICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYAN 342 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 2333333333333332222223333333222 122 11112222 22222222222222 23457888777654
Q ss_pred hHHhhHHHHHHhHHHHHHHhcc
Q psy16729 144 AFCFSLLGLIFPVLIEFVTYWD 165 (238)
Q Consensus 144 a~~~~~l~fi~P~l~yl~~~~~ 165 (238)
....+.|.++++-.+++.++
T Consensus 343 --~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 343 --GIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred --HHHHHHHHHHHHHHHHHhcc
Confidence 33568888888888887654
No 29
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=96.64 E-value=0.11 Score=48.15 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.9
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGF 47 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~ 47 (238)
.|+|.|-......-+|+|||+ +.++ ....+..++.++|.....
T Consensus 207 ~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 207 AFSFGGTELVALTAGEAANPRKSIPR---AAKRTFWRILVFYILTLF 250 (478)
T ss_pred HhhhccHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 367888888889999999997 5666 567888889999998654
No 30
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.64 E-value=0.14 Score=46.78 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=40.3
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGE 55 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~ 55 (238)
++|.|-....+.-+|+|||+ +.++ ....+...+.++|......-....++
T Consensus 212 ~~f~G~e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 212 FAFTGFEAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHhhcHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 67888888889999999995 5576 46788889999999988777766664
No 31
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=96.61 E-value=0.19 Score=46.56 Aligned_cols=49 Identities=4% Similarity=-0.001 Sum_probs=32.8
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYG 54 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG 54 (238)
|+|.|.......-+|+|||+ +.++ ....+..++.+++....+.-+...+
T Consensus 228 fsf~G~e~~~~~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 228 WSMTGYDGTAHMAEEIENPEVVGPR---AIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred HHhcCcchhhHHHHhcCChhhhcCH---HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67889889999999999997 5666 4556666665554443333333333
No 32
>PRK15049 L-asparagine permease; Provisional
Probab=96.59 E-value=0.066 Score=50.05 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=80.8
Q ss_pred CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhcCC-ch---h---hhhhCCCCCCcHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL-TE---D---NITYNLPQHEIAPQ 73 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~-~~---~---~il~n~~~~~~~~~ 73 (238)
.|+|.|-..+...-+|+|||+| .++ ....++..+.++|...........+.+ .. + .+...... .+...
T Consensus 230 ~faf~G~e~i~~~aeE~knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~-~~~~~ 305 (499)
T PRK15049 230 VFAFASIEMVGTAAGECKDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGV-PYIGS 305 (499)
T ss_pred HHHHhhHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCc-hhHHH
Confidence 3678888888899999999975 666 466777777777877655443333211 11 1 11111111 12334
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC-------CcchhHHH-HHHHHHHHHHHHHHHhcCC--hhHHHhHh
Q psy16729 74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV-------KKPKFYEY-IVRTVIVTAAVGLAVAVPT--IGPFLGLI 142 (238)
Q Consensus 74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~-------~~~~~~~~-~~r~~i~~~~~~lAi~iP~--~~~v~~lv 142 (238)
+..+...+..+.+.--.++..-+.+...-+++ .| ++....+. ++..++..+..++....|. ++.++++.
T Consensus 306 ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~ 385 (499)
T PRK15049 306 IMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFA 385 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44455555555444333344444444443322 22 11112222 2222222222222223332 44555554
Q ss_pred hhHHhhHHHHHHhHHHHHHHhcc
Q psy16729 143 GAFCFSLLGLIFPVLIEFVTYWD 165 (238)
Q Consensus 143 Ga~~~~~l~fi~P~l~yl~~~~~ 165 (238)
+ .+..+.|++|++.+++.+++
T Consensus 386 ~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 386 S--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred H--HHHHHHHHHHHHHHHHHHHh
Confidence 3 34578999999999888653
No 33
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.51 E-value=0.059 Score=49.40 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=35.5
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFL 48 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~ 48 (238)
|+|.|-......-+|+|||+ +.++ ....+..++.++|......
T Consensus 206 ~af~G~e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 206 WSYTGMASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHhhHHHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHH
Confidence 67888888899999999997 4566 5778999999999887654
No 34
>KOG1287|consensus
Probab=96.44 E-value=0.04 Score=50.84 Aligned_cols=158 Identities=9% Similarity=0.083 Sum_probs=96.1
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCC------CC--CCcHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNL------PQ--HEIAPQ 73 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~------~~--~~~~~~ 73 (238)
|+|.|=..+=.+-+|+|||+ ..++ ....++.+++++|..+=+..+ +--..++++.+- .+ -+.+..
T Consensus 215 fa~~GWd~lN~vteEiknP~ktLP~---Ai~isi~lvt~iYil~NvAy~---~vls~~e~l~S~aVav~Fa~~~~G~~~~ 288 (479)
T KOG1287|consen 215 FAFSGWDYLNYVTEEIKNPRRTLPR---AILISIPLVTVIYVLVNVAYF---TVLSPDEILSSDAVAVTFADRILGVFAW 288 (479)
T ss_pred hcccCchhhccchHhhcCccccchH---HHHHhhHHHHHHHHHhHhhee---EecCHHHhcccchHHHHHHHHhccchHH
Confidence 56777777778889999996 6666 478999999999999754433 222233332211 00 011224
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhc-cCC----CcchhH-HHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHh
Q psy16729 74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKD-NFV----KKPKFY-EYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCF 147 (238)
Q Consensus 74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~-~~~----~~~~~~-~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~ 147 (238)
+..+...++.+.+.--.++..-+.+....++ ..| ..+.++ -=...+.+.....++..++.|++.+++.++=.-.
T Consensus 289 ~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~ 368 (479)
T KOG1287|consen 289 AIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYW 368 (479)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555555555555544455444444444333 233 011111 1122334444555566677899999999988888
Q ss_pred hHHHHHHhHHHHHHHhccC
Q psy16729 148 SLLGLIFPVLIEFVTYWDV 166 (238)
Q Consensus 148 ~~l~fi~P~l~yl~~~~~~ 166 (238)
....+.+=+++|+|.++++
T Consensus 369 l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 369 LFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 8888889999999987765
No 35
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=96.43 E-value=0.25 Score=45.78 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=34.8
Q ss_pred cccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGY 50 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY 50 (238)
|+|.|-......-+|+||+++.++ ....+..++.++|........
T Consensus 210 ~af~G~e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 210 WVFIGIEGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHhHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777778899999667777 467899999999988766533
No 36
>PRK10836 lysine transporter; Provisional
Probab=96.41 E-value=0.18 Score=46.96 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=36.9
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLK 52 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~ 52 (238)
|+|.|-......-+|+|||+ +.++ ....+...+.++|......-...
T Consensus 216 faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 216 FSFQGTELIGIAAGESEDPAKNIPR---AVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHccHHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHhee
Confidence 77888888889999999997 4566 46788899999999876554333
No 37
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=96.41 E-value=0.11 Score=48.12 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=32.6
Q ss_pred CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLG 49 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~g 49 (238)
.|+|.|-......-+|+|||+| .++ ....+...+.+.|......-
T Consensus 221 ~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 221 VFAFVGIELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred HHHHhcHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3678888888999999999974 666 34556666677777655444
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.32 E-value=0.075 Score=49.55 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=36.3
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY 50 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY 50 (238)
|+|.|-.......+|+|||+ +.++ ....+..++.++|......-.
T Consensus 246 ~af~G~e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 246 WAYGGWNYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHhHHHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888999999996 5666 577899999999999865443
No 39
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.27 E-value=0.39 Score=43.91 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=37.3
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY 50 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY 50 (238)
|+|.|.......-+|+|||+ +.++ ....+..++.++|........
T Consensus 198 faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 198 WAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred HHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888999999995 6887 577899999999999876544
No 40
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.20 E-value=0.21 Score=46.55 Aligned_cols=44 Identities=18% Similarity=0.039 Sum_probs=35.0
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLG 49 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~g 49 (238)
|+|.|.......-+|+|||+ +.+| ....+...+.++|.......
T Consensus 222 ~~f~G~e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 222 FAYGGIEAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHhHHHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 67888888889999999997 5776 56788888889998864433
No 41
>PRK10238 aromatic amino acid transporter; Provisional
Probab=96.19 E-value=0.25 Score=45.56 Aligned_cols=158 Identities=12% Similarity=0.087 Sum_probs=74.4
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHH--HHHhcCCc--hh---hhhhCCCCCCcHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLG--YLKYGELT--ED---NITYNLPQHEIAPQ 73 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~g--Y~~fG~~~--~~---~il~n~~~~~~~~~ 73 (238)
.|+|.|.......-+|+|||+ +.++ ....+.....+.|...-... .....|-. .+ .+..+... .....
T Consensus 210 ~~af~G~e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~ 285 (456)
T PRK10238 210 MFSFGGLELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVAN 285 (456)
T ss_pred HHHhcCHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHH
Confidence 367888888889999999997 4666 35555666666665532221 11111110 00 11122211 12233
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC-------CcchhHHHHH-HHHHHHHHHHHHHhcCC--hhHHHhHh
Q psy16729 74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV-------KKPKFYEYIV-RTVIVTAAVGLAVAVPT--IGPFLGLI 142 (238)
Q Consensus 74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~-------~~~~~~~~~~-r~~i~~~~~~lAi~iP~--~~~v~~lv 142 (238)
+.+....+..+.+.--.+....+.+...-+++ .| ++....+.++ ..++..+..++....|+ ++.+.++.
T Consensus 286 i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~ 365 (456)
T PRK10238 286 ALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALV 365 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34444444444443333344444444433221 22 1111222222 22222122222112232 44555553
Q ss_pred hhHHhhHHHHHHhHHHHHHHhcc
Q psy16729 143 GAFCFSLLGLIFPVLIEFVTYWD 165 (238)
Q Consensus 143 Ga~~~~~l~fi~P~l~yl~~~~~ 165 (238)
+ .+..+.|.+|++.+++.+++
T Consensus 366 ~--~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 366 V--SALVINWAMISLAHMKFRRA 386 (456)
T ss_pred H--HHHHHHHHHHHHHHHHHHHH
Confidence 3 34568999999999988764
No 42
>PRK10580 proY putative proline-specific permease; Provisional
Probab=96.10 E-value=0.25 Score=45.52 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=31.3
Q ss_pred cccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFL 48 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~ 48 (238)
|+|.|-......-+|+|||+| .++ ....+...+.++|......
T Consensus 210 fsf~G~e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 210 FAYGGIEIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHhCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 677888888889999999985 566 3446666667777766443
No 43
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.01 E-value=0.8 Score=42.41 Aligned_cols=50 Identities=8% Similarity=-0.093 Sum_probs=35.4
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYG 54 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG 54 (238)
.|+|.|-.....+-+|+|||+ +.+| .+..+..+..++|...-+......+
T Consensus 223 ~~~f~G~e~~~~~aeE~knP~r~iPr---ai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 223 AYVMVGFGSAGELSEETKNPRRVAPR---TILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHhcCcchHHHHHHHhcCcchhhhH---HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 367888888999999999997 5666 4667777776666555544444444
No 44
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=96.00 E-value=0.14 Score=48.49 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=81.2
Q ss_pred cccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhcCC---chh---hhhhCCCCCCcHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL---TED---NITYNLPQHEIAPQIA 75 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~---~~~---~il~n~~~~~~~~~i~ 75 (238)
|+|.|--.+.+.-+|.|||+| .++ ....+..+++++|..+...--..-..+ ..+ ....... .++...+.
T Consensus 242 faf~Gfd~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii 317 (557)
T TIGR00906 242 FAFIGFDAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIV 317 (557)
T ss_pred HHHhhHHHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHH
Confidence 677888888899999999975 776 578999999999998875533222211 011 1112211 12333444
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC--------CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHH
Q psy16729 76 NIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV--------KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFC 146 (238)
Q Consensus 76 ~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~--------~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~ 146 (238)
.+...+.++.+.-..+...-+.+...-+++ .| +.+...+..+-. .+++.+++. +.+++.+.++.. .
T Consensus 318 ~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~--~iv~~il~~-~~~~~~l~~l~s--i 392 (557)
T TIGR00906 318 AVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVS--GAIAALMAF-LFDLKALVDLLS--I 392 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHH--HHHHHHHHH-HcCHHHHHHHHH--H
Confidence 444444444444444444444444443322 22 111112221111 122233333 335677766652 2
Q ss_pred hhHHHHHHhHHHHHHHhcc
Q psy16729 147 FSLLGLIFPVLIEFVTYWD 165 (238)
Q Consensus 147 ~~~l~fi~P~l~yl~~~~~ 165 (238)
+..+.|+++++..+.++++
T Consensus 393 g~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 393 GTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3468889988877776643
No 45
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=95.97 E-value=0.23 Score=45.63 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=33.8
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY 50 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY 50 (238)
.|+|.|......+-+|+|||+ +.++ ....+.....++|........
T Consensus 211 ~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 211 MFSFMGTEIVTIAAAESSNPIKSITR---ATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHhccHHHHhHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence 367888888899999999997 5666 355667777788887644333
No 46
>TIGR00930 2a30 K-Cl cotransporter.
Probab=94.25 E-value=0.89 Score=46.00 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=31.8
Q ss_pred ccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHH
Q psy16729 4 GHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGF 47 (238)
Q Consensus 4 af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~ 47 (238)
||.|.-....+-.|+|||+ ..++ ....++.+++++|+.+.+
T Consensus 292 A~tGi~agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 292 SVTGILAGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHHHHHHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHH
Confidence 4455555566889999997 5666 467999999999999875
No 47
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=93.41 E-value=1.1 Score=39.61 Aligned_cols=153 Identities=10% Similarity=0.082 Sum_probs=83.4
Q ss_pred CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhh-------hhCCCCCCc---H
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNI-------TYNLPQHEI---A 71 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~i-------l~n~~~~~~---~ 71 (238)
.++|.|...+.-...++|||++.+| ....+..++.++|...-...-..+|.+..++. .+..+-.+. .
T Consensus 189 ~~~f~g~~i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~ 265 (359)
T TIGR00912 189 TFAFGEIEIFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERF 265 (359)
T ss_pred hhhhHHHHHHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHH
Confidence 4677787777888889999988877 56789999999999988888888885433221 111111111 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhh---HHhh
Q psy16729 72 PQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGA---FCFS 148 (238)
Q Consensus 72 ~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa---~~~~ 148 (238)
-.+.-.......+...-+.++.....+.+.++.+. .+....-.+. ....++ ..|+-.+....... ..+.
T Consensus 266 e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 337 (359)
T TIGR00912 266 ELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRK-----YSILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLPIIAI 337 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----cchhHHHHHH--HHHHHH-HccchHHHHHHHHHHHHHHHH
Confidence 11122223344555555666666666665544322 1112221221 222222 45653222323222 2334
Q ss_pred HHHHHHhHHHHHHHhcc
Q psy16729 149 LLGLIFPVLIEFVTYWD 165 (238)
Q Consensus 149 ~l~fi~P~l~yl~~~~~ 165 (238)
.+.+++|.++.+....|
T Consensus 338 ~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 338 VFFLLLPLILFIIVKIK 354 (359)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56678899887665433
No 48
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=87.59 E-value=23 Score=32.54 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHHHHHhccC--CCCCcchHHHHhHHHHHHHHHH
Q psy16729 111 KFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDV--GFGPGNWRVWKNILVLIFGVLA 188 (238)
Q Consensus 111 ~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~yl~~~~~~--~~~~~~~~~~~~~~ii~~Gi~~ 188 (238)
+.+|...|....+.+.++.+..-+.+.++.+.+.+.+..+-+..+++.++...++. ++..++|.....|...++=+..
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~~L 403 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIVAL 403 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 44667777666666565555444999999999999988887777777776655441 3334566666666555544333
Q ss_pred H
Q psy16729 189 L 189 (238)
Q Consensus 189 ~ 189 (238)
.
T Consensus 404 ~ 404 (416)
T COG1914 404 N 404 (416)
T ss_pred H
Confidence 3
No 49
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=86.52 E-value=5.5 Score=36.03 Aligned_cols=25 Identities=16% Similarity=0.497 Sum_probs=17.4
Q ss_pred ChhHHHhHhhhHHhhHHHHHHhHHHHHHH
Q psy16729 134 TIGPFLGLIGAFCFSLLGLIFPVLIEFVT 162 (238)
Q Consensus 134 ~~~~v~~lvGa~~~~~l~fi~P~l~yl~~ 162 (238)
.++.++++ +...+.+++|..+-+.+
T Consensus 323 Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 323 GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 67777774 56677888888766544
No 50
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=86.14 E-value=0.64 Score=42.98 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=39.8
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGE 55 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~ 55 (238)
.++|.|.......-+|.|||+ ..++ ....+.....++|.......=...|.
T Consensus 210 ~~af~G~e~~a~~a~E~k~P~k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 210 FFAFVGFESIAILAEEAKNPRKTIPR---ATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hcccccccccccccccCCCchhhhhh---HhhhhhhhhhhhhhhhhhhcccccCc
Confidence 468889999999999999997 5666 46788888889998877655555553
No 51
>KOG1286|consensus
Probab=84.49 E-value=6.1 Score=37.63 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=87.3
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHH-hcCC--chhhh-----h---hCCCCCC
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLK-YGEL--TEDNI-----T---YNLPQHE 69 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~-fG~~--~~~~i-----l---~n~~~~~ 69 (238)
+|+|.|.-.+-..-+|-|||+ ..++ ....++..++++|....+.-=+. =-++ ..++. . .+.+.-.
T Consensus 242 ~fsf~G~e~va~~a~E~kNP~k~IP~---ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k 318 (554)
T KOG1286|consen 242 FFSFIGFELVATTAEEAKNPRKAIPK---AIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAK 318 (554)
T ss_pred HHHHhhHHHHHHHHHhccCCcccccH---HHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCcc
Confidence 477888888888899999996 5665 57899999999999877532211 1111 11111 0 0111111
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccC-C----CcchhHH-HHHHHHHHHHHHHHHHhcCC-----hhHH
Q psy16729 70 IAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNF-V----KKPKFYE-YIVRTVIVTAAVGLAVAVPT-----IGPF 138 (238)
Q Consensus 70 ~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~-~----~~~~~~~-~~~r~~i~~~~~~lAi~iP~-----~~~v 138 (238)
.+..+.+....+.++.+---.+++.-+.+..+.++.. | +-+++.+ +.-..+..++..++++.... ++.+
T Consensus 319 ~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L 398 (554)
T KOG1286|consen 319 YLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWL 398 (554)
T ss_pred ccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 2223666666666666655566677666666654332 2 1111122 22222333333333433332 5888
Q ss_pred HhHhhhHHhhHHHHHHhHHHHHHHhc
Q psy16729 139 LGLIGAFCFSLLGLIFPVLIEFVTYW 164 (238)
Q Consensus 139 ~~lvGa~~~~~l~fi~P~l~yl~~~~ 164 (238)
+++.|-- ..+++.+=++.|++.++
T Consensus 399 ~~~~si~--tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 399 VNLSSIG--TLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHhHH--HHHHHHHHHHHHeeeee
Confidence 8888644 45666666677766654
No 52
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=77.94 E-value=59 Score=30.14 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=69.9
Q ss_pred eeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhhCCCCCCcHHHHHHHHHHHHHHHhhh
Q psy16729 10 QVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELT-EDNITYNLPQHEIAPQIANIAIGIAVFCTFG 88 (238)
Q Consensus 10 ~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~-~~~il~n~~~~~~~~~i~~i~~~i~ll~s~p 88 (238)
...+..+-+|+|+. .+..............+-.++|...-.+-|+.- ..++...+.. +...+.+...++...+=-
T Consensus 212 ~~aDysRy~~~~t~-~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~ 287 (442)
T COG1457 212 YAADYSRYAPSPTP-SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNA 287 (442)
T ss_pred hhhhhhhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCc
Confidence 33455666677763 221112445566677777788888888888765 3333333332 444444445555555444
Q ss_pred hhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHH----hcCChhHHHhHhhhHHhhHHHHH
Q psy16729 89 LQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV----AVPTIGPFLGLIGAFCFSLLGLI 153 (238)
Q Consensus 89 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi----~iP~~~~v~~lvGa~~~~~l~fi 153 (238)
.++++.--.+.+...+ .++..+.+...+. ..+++|+ +..+++.++.++|+.........
T Consensus 288 ~nlYsa~ls~~~i~~~----l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~ 350 (442)
T COG1457 288 NNLYSAGLSFANIIPK----LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVM 350 (442)
T ss_pred HHHHHHHHHHHHhhhh----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443333333321 2233333333332 3333443 35678888888888775544433
No 53
>KOG1289|consensus
Probab=77.06 E-value=69 Score=30.45 Aligned_cols=52 Identities=0% Similarity=-0.222 Sum_probs=34.3
Q ss_pred cccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy16729 3 NGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELT 57 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~ 57 (238)
+++.|--.-..+-+|-||+++ -++ ....+..+.+++=..+-+.-.+.-+|+.
T Consensus 263 wt~sGyDa~~H~aEE~~nAsk~aPr---gIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 263 WTMSGYDAAAHMAEETKNASKAAPR---GIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred eEEeccCchHHHHHHhcchhhhccH---HHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 345555566778889999874 444 4567777777776666666666777543
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=69.46 E-value=82 Score=28.85 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=30.0
Q ss_pred eeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHH----hcCCc
Q psy16729 9 SQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLK----YGELT 57 (238)
Q Consensus 9 ~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~----fG~~~ 57 (238)
...++.-+.+|+|++-.+ ....++....+....+|+++-.. +|+..
T Consensus 225 ~~~~DysRy~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 225 TNAPDFTRFGKSKKTAIW---GQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred cCchhhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 345667777787765544 24566677777777777777665 77654
No 55
>KOG4812|consensus
Probab=68.09 E-value=9.1 Score=32.20 Aligned_cols=85 Identities=21% Similarity=0.120 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHhH---------hhhHHhhHHHHHHhHHHHHHHhccCCC--CCcchHHHHhHHHHHHHHH
Q psy16729 119 TVIVTAAVGLAVAVPTIGPFLGL---------IGAFCFSLLGLIFPVLIEFVTYWDVGF--GPGNWRVWKNILVLIFGVL 187 (238)
Q Consensus 119 ~~i~~~~~~lAi~iP~~~~v~~l---------vGa~~~~~l~fi~P~l~yl~~~~~~~~--~~~~~~~~~~~~ii~~Gi~ 187 (238)
-.+.+.++++|...+.++.++.+ -||.++.-+.++= |+.+.+..+. +-..-.+++.|+++++|.+
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 34455566677777777666655 4777777777664 4444333221 1011135678999999999
Q ss_pred HHHHhHHH--HHHHHHHHcCCC
Q psy16729 188 ALVFGTQT--SIGDIMRAYMPP 207 (238)
Q Consensus 188 ~~v~gt~~--si~~ii~~~~~~ 207 (238)
....|++. .++.+-+++...
T Consensus 236 l~lr~~i~YikVrrm~~~~s~~ 257 (262)
T KOG4812|consen 236 LFLRGFINYIKVRRMEEKYSNQ 257 (262)
T ss_pred HHHHHHHhHHHHhhHHHHHhcc
Confidence 99888865 445555555443
No 56
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=63.90 E-value=32 Score=26.94 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=44.1
Q ss_pred hHhhhHHhhHHHHHHhHHHHHH-HhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCC
Q psy16729 140 GLIGAFCFSLLGLIFPVLIEFV-TYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDS 209 (238)
Q Consensus 140 ~lvGa~~~~~l~fi~P~l~yl~-~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~~~ 209 (238)
...|+..+....|..|-+.+.. ....++...++ -.-.+-+++|+..+++|+..+.....++--+..+
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~---~~pflSf~lG~~~m~~~~~~~~k~~y~kk~~~l~ 100 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPR---QKPFLSFLLGLGAMMAGSQLAGKYQYNKKLNSLD 100 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCc---cCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3567777788899999887654 22222211122 2345567789999999999888888776555543
No 57
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=62.53 E-value=24 Score=32.64 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=79.2
Q ss_pred cccccceeeccchhhcCCCCCC-cccc--chhhHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhhCCCCCCcHHHHHHH
Q psy16729 3 NGHLPDSQVMPLENNMQTPNHF-VGLC--GVLNQGMGGVTMIYILLGFLGYLKYGELTEDN--ITYNLPQHEIAPQIANI 77 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~~~-~~~~--~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~--il~n~~~~~~~~~i~~i 77 (238)
|+|+|.-.+=.-.+|-|||++- +|+- -..++...-+..+..++.+.-|=.++++..+- +...+.- .....+.|+
T Consensus 214 Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi-~~Aa~i~N~ 292 (462)
T COG1113 214 FAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI-PFAAGIMNF 292 (462)
T ss_pred HHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC-cccccceeE
Confidence 6777777777778899999733 3320 01334444444455555555565555543332 2222221 112222332
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC----C--cc--hhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhh
Q psy16729 78 AIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV----K--KP--KFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFS 148 (238)
Q Consensus 78 ~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~----~--~~--~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~ 148 (238)
-...+.+.++==.++..-+++.....+. -| + ++ .+.-.++..+...++.++-...| +.++.++-+..+.
T Consensus 293 VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~ 370 (462)
T COG1113 293 VVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGL 370 (462)
T ss_pred EEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Confidence 2222223322222233334444443221 11 1 11 13446677777778888888999 6666666555544
Q ss_pred HHH--HHHhHHHHHHHhc
Q psy16729 149 LLG--LIFPVLIEFVTYW 164 (238)
Q Consensus 149 ~l~--fi~P~l~yl~~~~ 164 (238)
.+. ..+=.+.|+|.++
T Consensus 371 ~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 371 GLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333 3344556777766
No 58
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=62.03 E-value=23 Score=28.97 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=49.9
Q ss_pred hHHHhHhhhHHhhHHHHHHhHHHHHHHhccCCC-----C--CcchHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16729 136 GPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGF-----G--PGNWRVWKNILVLIFGVLALVFGTQTSIGDIMR 202 (238)
Q Consensus 136 ~~v~~lvGa~~~~~l~fi~P~l~yl~~~~~~~~-----~--~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~ 202 (238)
+...-+.|++.+.=+..++|+...+...+++-- + -+|.....+.+...+|+++++.+...|...+.+
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334446777777778889999999988766311 1 135566788888899999999999999888875
No 59
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=56.46 E-value=1.5e+02 Score=26.64 Aligned_cols=128 Identities=16% Similarity=0.027 Sum_probs=60.5
Q ss_pred eeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHHHHHHHhhhh
Q psy16729 10 QVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGL 89 (238)
Q Consensus 10 ~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~i~ll~s~pl 89 (238)
..++..+-.|+|++... .......+...+...+|...-...|+.-..+++... + ....+-+...++...+-..
T Consensus 191 ~~~DysRy~k~~~~~~~---~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~---g-~~~~~~~~~~l~~~~~n~~ 263 (386)
T TIGR02358 191 LIADYTRFARNPRHVFL---GTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA---G-LGIPALLIILLSTVTTTFM 263 (386)
T ss_pred HccchhhhcCCCcceeh---HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc---c-HHHHHHHHHHHhHHHHHHH
Confidence 35666777777765544 234566777777777887777666653222222221 1 1112223333333333344
Q ss_pred hhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHH--hcCChhHHHhHhhhHHhhHHH
Q psy16729 90 QFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV--AVPTIGPFLGLIGAFCFSLLG 151 (238)
Q Consensus 90 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi--~iP~~~~v~~lvGa~~~~~l~ 151 (238)
+.++.--.+.+.. ++.+ ++++.++ ..++..+++. ....+.+++++.|.+..+...
T Consensus 264 N~ys~~l~l~~l~-~~~~---~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~g 320 (386)
T TIGR02358 264 DIYSAAISTGNLL-PRLK---VKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYA 320 (386)
T ss_pred HHHHHHHHHHHHH-Hhhc---chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333 2221 1222211 1122222222 234577777777777765444
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=53.02 E-value=1.7e+02 Score=26.24 Aligned_cols=33 Identities=12% Similarity=-0.032 Sum_probs=14.7
Q ss_pred CCCCCCccccchhhHHHHHHHHHHH---HHHHHHHHHhc
Q psy16729 19 QTPNHFVGLCGVLNQGMGGVTMIYI---LLGFLGYLKYG 54 (238)
Q Consensus 19 k~p~~~~~~~~v~~~a~~~~~~~Y~---~~g~~gY~~fG 54 (238)
|++++.++. ...+......++. .+|..++..|.
T Consensus 230 ks~~~~r~~---~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 230 KSAKHAKKG---CLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred CCHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444442 3344344444444 44555555553
No 61
>PRK11375 allantoin permease; Provisional
Probab=49.36 E-value=2.3e+02 Score=26.51 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=13.6
Q ss_pred hhHHHhHhhhHHhhHHHHH
Q psy16729 135 IGPFLGLIGAFCFSLLGLI 153 (238)
Q Consensus 135 ~~~v~~lvGa~~~~~l~fi 153 (238)
|.+++++.|++.++....+
T Consensus 373 f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888888887655433
No 62
>COG3817 Predicted membrane protein [Function unknown]
Probab=47.60 E-value=1.1e+02 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=30.1
Q ss_pred chHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHcCCCC
Q psy16729 172 NWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPD 208 (238)
Q Consensus 172 ~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~~ 208 (238)
.|..++-..+-.+|.+....|.--++-++++++-..+
T Consensus 165 ~wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~i~~D 201 (313)
T COG3817 165 SWAAILPQMLAALGAVFASAGVGDVIAHLISEIIPAD 201 (313)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 4666777788889999999999999999998876543
No 63
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=46.87 E-value=1.6e+02 Score=25.76 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=27.7
Q ss_pred chHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCCCCCeeEEeccc
Q psy16729 172 NWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAIINGTL 220 (238)
Q Consensus 172 ~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~~~~~~~~~~~~~~ 220 (238)
.|..+...++++.|+.++.+|..+-... +-+.+ ...-|.++..-..
T Consensus 267 g~~~~~~~~l~~~g~~l~~lG~igeyi~--~i~~~-~~~rp~y~v~~~~ 312 (325)
T PRK10714 267 GVFMLFAVLFTFIGAQFIGMGLLGEYIG--RIYND-VRARPRYFVQQVV 312 (325)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-hccCCcEEEEEEe
Confidence 4566777777888888888887654332 22222 3446777654433
No 64
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=39.92 E-value=2.2e+02 Score=24.85 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHc
Q psy16729 178 NILVLIFGVLALVFGTQTSIGDIMRAY 204 (238)
Q Consensus 178 ~~~ii~~Gi~~~v~gt~~si~~ii~~~ 204 (238)
.+.+++.|++.+.+|.+.++....+..
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577788888899999998888765
No 65
>PRK00701 manganese transport protein MntH; Reviewed
Probab=39.14 E-value=3.1e+02 Score=25.25 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--CChhHHHhHhhhHHhhHHHHHHhHHH
Q psy16729 112 FYEYIVRTVIVTAAVGLAVAV--PTIGPFLGLIGAFCFSLLGLIFPVLI 158 (238)
Q Consensus 112 ~~~~~~r~~i~~~~~~lAi~i--P~~~~v~~lvGa~~~~~l~fi~P~l~ 158 (238)
.+|...|.+.++.+.++...- .+...++-+.. ....+.+|...
T Consensus 347 ~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aq----v~~~i~LP~~~ 391 (439)
T PRK00701 347 VRRLITRGLAMVPALIVILLGGELDPTRLLVLSQ----VVLSFGLPFAL 391 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----HHHHHHHHHHH
Confidence 455555655555444444433 23333433333 33445555543
No 66
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.28 E-value=58 Score=24.55 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHcCCC
Q psy16729 178 NILVLIFGVLALVFGTQTSIGDIMRAYMPP 207 (238)
Q Consensus 178 ~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~ 207 (238)
....+++|++++++|+..-+.-++++..+.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666777777777766665555554443
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=32.03 E-value=3.3e+02 Score=24.30 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCh--hHHHhHhhhH
Q psy16729 121 IVTAAVGLAVAVPTI--GPFLGLIGAF 145 (238)
Q Consensus 121 i~~~~~~lAi~iP~~--~~v~~lvGa~ 145 (238)
+.+++.+++...|+. -++..+..+.
T Consensus 350 ~~~i~~~la~~~~~~~i~~~~~~~~~~ 376 (406)
T PF00474_consen 350 IGIIAILLALFFPDSGIIDLILFAFGI 376 (406)
T ss_dssp HHHHHHHHGGGGGGSSHHHHHHHHHTT
T ss_pred eHHhHHHHHhccccchHHHHHHHHHHH
Confidence 334455666677764 4444444443
No 68
>PHA03048 IMV membrane protein; Provisional
Probab=31.72 E-value=1.9e+02 Score=20.51 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=28.4
Q ss_pred hhHHhhHHHHHHhHHHHHHHhccCCCCCcchHHHHhHHHHHHHHHHHH
Q psy16729 143 GAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190 (238)
Q Consensus 143 Ga~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v 190 (238)
|.+.+..+-.+.-|+|-...+++.+.+...|| +++...+++|++..+
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~k~~~~~wR-alsii~FIlgivl~l 59 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKNKATVTVWR-ALSGIAFVLGIVMTI 59 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence 45556666677788887777655432344565 456666666655543
No 69
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.15 E-value=1.9e+02 Score=22.35 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHHHHHHHhhhhhhHHH
Q psy16729 30 VLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVC 94 (238)
Q Consensus 30 v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~i~ll~s~pl~~~p~ 94 (238)
.+...+-....+..++|+..-..+-|+. ..-+-+.-+.|+..+.-+++.++.+.++....+|.
T Consensus 42 ~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 42 AVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4677777777888888875544443332 22222233567777788888888888877666665
No 70
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=27.74 E-value=1.5e+02 Score=25.72 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=37.0
Q ss_pred ccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16729 4 GHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL 56 (238)
Q Consensus 4 af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~ 56 (238)
.|.|...+.-+...+|+|++..| ....+.....++|...-...-..||.+
T Consensus 187 ~~~~~~~~l~~~p~~~~~~~~~k---~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 187 PFGGIEILLFLFPFVKDKKKLKK---SLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHHHHHHHHHHHcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34455555567777888887766 467888888888888888888888854
No 71
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=27.47 E-value=88 Score=20.36 Aligned_cols=33 Identities=18% Similarity=-0.015 Sum_probs=15.9
Q ss_pred cCCCCCCccccchhhHHHHHHH--HHHHHHHHHHH
Q psy16729 18 MQTPNHFVGLCGVLNQGMGGVT--MIYILLGFLGY 50 (238)
Q Consensus 18 mk~p~~~~~~~~v~~~a~~~~~--~~Y~~~g~~gY 50 (238)
||+++..++.+-|+.+++++-+ ++|..+|..-.
T Consensus 1 ~r~k~~~~mtriVLLISfiIlfgRl~Y~~I~a~~h 35 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILFGRLIYSAIGAWVH 35 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4555533332236666665444 35555554443
No 72
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=26.65 E-value=2.3e+02 Score=19.79 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCchhhhhhCCCCCCcHH--HHHHH------HHHHHHHHhhhhhh
Q psy16729 42 YILLGFLGYLKYGELTEDNITYNLPQHEIAP--QIANI------AIGIAVFCTFGLQF 91 (238)
Q Consensus 42 Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~--~i~~i------~~~i~ll~s~pl~~ 91 (238)
-....+.+-.+||.-++. .|+|-++|-. .+.+. ...+.+++|.|+-+
T Consensus 24 iia~~Vv~rAt~gGVi~q---YniP~s~WttsMf~~Q~ami~vYS~VFT~L~sIPlg~ 78 (85)
T PF10749_consen 24 IIAATVVGRATIGGVIEQ---YNIPFSEWTTSMFILQGAMILVYSIVFTILLSIPLGF 78 (85)
T ss_pred HHHHHHHHHHHHHhHHHH---hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566788888765443 3566555522 22222 23344566666643
No 73
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=26.24 E-value=2.4e+02 Score=19.93 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=29.8
Q ss_pred HhhhHHhhHHHHHHhHHHHHHHhccCCC--CCcchHHHHhHHHHHHHHHHHH
Q psy16729 141 LIGAFCFSLLGLIFPVLIEFVTYWDVGF--GPGNWRVWKNILVLIFGVLALV 190 (238)
Q Consensus 141 lvGa~~~~~l~fi~P~l~yl~~~~~~~~--~~~~~~~~~~~~ii~~Gi~~~v 190 (238)
+-|.+.+..+-.+.-|+|-...++|... +...|+ +++...+++|++..+
T Consensus 11 ~s~vli~GIiLL~~ACIFAfidFSK~~s~~~~~~wR-alSii~FIlG~vl~l 61 (91)
T PHA02680 11 YSGVLICGVLLLTAACVFAFVDFSKNTSNVTDYVWR-ALSVTCFIVGAVLLL 61 (91)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHH-HHHHHHHHHHHHHHH
Confidence 3456666667777888887777655321 234565 456666666655543
No 74
>PLN02680 carbon-monoxide oxygenase
Probab=24.77 E-value=1.6e+02 Score=24.84 Aligned_cols=75 Identities=9% Similarity=0.087 Sum_probs=47.3
Q ss_pred hhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHHHHHHHhhhhhhHHH
Q psy16729 15 ENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVC 94 (238)
Q Consensus 15 ~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~i~ll~s~pl~~~p~ 94 (238)
|+..+.+++.+| .+....-....+..++|+..-..+-|+ ..+-+-+.-+.|+....-+++.++.+.++....+|.
T Consensus 69 yr~~~~~k~~~K---~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 69 YKTVPGTKNLKK---LVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred cccccccchhHH---HHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 333444444444 467777777778888887665555443 233222234567778888888888888887777764
No 75
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=23.93 E-value=6.5e+02 Score=24.11 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=76.3
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHH-HHHHH-hcCC---------c-hhh---hhhCC
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGF-LGYLK-YGEL---------T-EDN---ITYNL 65 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~-~gY~~-fG~~---------~-~~~---il~n~ 65 (238)
+|+|.|.-++---..|-+||+ ..++ ..+-.+-=..++|...-+ +|.+. |.|. + ++. +++|.
T Consensus 244 ~Fsf~GtElvgiaAgEs~nP~K~iPk---Aik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~ 320 (541)
T COG0833 244 AFSFSGTELVGLAAGESENPRKSIPK---AIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNA 320 (541)
T ss_pred eeeeeceeeeeeeecccCCchhhhHH---HHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhc
Confidence 689999999998899999996 4555 345555444555544221 22221 2220 0 111 11111
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccC-C-------CcchhHH-HHHHHHHHHHHHHHHHhcC--C
Q psy16729 66 PQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNF-V-------KKPKFYE-YIVRTVIVTAAVGLAVAVP--T 134 (238)
Q Consensus 66 ~~~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~-~-------~~~~~~~-~~~r~~i~~~~~~lAi~iP--~ 134 (238)
.- ..+..+.|....++++.+-==.++..-+.+..+-.++. | ++..... ++++.++-+++++-+..-. -
T Consensus 321 Gi-~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~v 399 (541)
T COG0833 321 GI-PVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTV 399 (541)
T ss_pred CC-ccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchH
Confidence 10 12334455545444444432333445566666654432 2 2222222 3334444344444443411 2
Q ss_pred hhHHHhHhhhHHhhHHHHHHhHHHHHHHhc
Q psy16729 135 IGPFLGLIGAFCFSLLGLIFPVLIEFVTYW 164 (238)
Q Consensus 135 ~~~v~~lvGa~~~~~l~fi~P~l~yl~~~~ 164 (238)
++-++++.|-.. .++.+.=++.|++.++
T Consensus 400 f~wL~~isg~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 400 FNWLLNISGLSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 555666665433 4566666777777653
No 76
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=23.73 E-value=2.8e+02 Score=19.76 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=30.9
Q ss_pred hhHHhhHHHHHHhHHHHHHHhccCC-CCCcchHHHHhHHHHHHHHHHHHHhH
Q psy16729 143 GAFCFSLLGLIFPVLIEFVTYWDVG-FGPGNWRVWKNILVLIFGVLALVFGT 193 (238)
Q Consensus 143 Ga~~~~~l~fi~P~l~yl~~~~~~~-~~~~~~~~~~~~~ii~~Gi~~~v~gt 193 (238)
|.+.+..+-.+.-|+|-...++|.+ .....|| .++.+.+++|++..+--.
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wR-alSii~FI~giil~lG~~ 63 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWR-ALSIICFILGIILTLGIV 63 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHH-HHHHHHHHHHHHHHHHHH
Confidence 5666667777888888777765543 1223565 566666777766554433
No 77
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.09 E-value=3.7e+02 Score=20.98 Aligned_cols=62 Identities=21% Similarity=0.151 Sum_probs=32.3
Q ss_pred hhHHHHHHhHHHHHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCCCCCee
Q psy16729 147 FSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVA 214 (238)
Q Consensus 147 ~~~l~fi~P~l~yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~~~~~~~~ 214 (238)
+..+.|++|.+..+....-.+ ....+=.+.++|.+.+...-+..+...-+++.+.++..|.-
T Consensus 77 sA~LvYi~PL~~l~v~~~La~------~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~~~~QpVi 138 (150)
T COG3086 77 SALLVYIFPLVGLFLGAILAQ------YLFFSELIVIFGAFLGLALGFLLARRYSRKLAKRTEWQPVI 138 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCeE
Confidence 456777777776554322110 00111122333444444455566777777777777766664
No 78
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=23.04 E-value=1.3e+02 Score=19.18 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=23.8
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCch
Q psy16729 21 PNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTE 58 (238)
Q Consensus 21 p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~ 58 (238)
|..|.. +.+-.++..++|++.|+.=++.+-++..
T Consensus 19 ~NsF~f----Viik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 19 PNSFWF----VIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred CchHHH----HHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 444554 3466778899999999887777665443
No 79
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.98 E-value=3e+02 Score=19.93 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHHHHHhHHHHH
Q psy16729 177 KNILVLIFGVLALVFGTQTSI 197 (238)
Q Consensus 177 ~~~~ii~~Gi~~~v~gt~~si 197 (238)
+...++++|++.++...|.-+
T Consensus 76 ~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 76 WTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888777665544
No 80
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=21.83 E-value=5.4e+02 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHc
Q psy16729 178 NILVLIFGVLALVFGTQTSIGDIMRAY 204 (238)
Q Consensus 178 ~~~ii~~Gi~~~v~gt~~si~~ii~~~ 204 (238)
...++.+|++.+..|.+.++....+..
T Consensus 280 ~~~l~~~g~~lg~lgs~~s~~r~Lr~~ 306 (309)
T TIGR00439 280 LGLLLGFCIALGVVGAWLATTQHLLCF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888889999999998888766
No 81
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.69 E-value=1.3e+02 Score=22.65 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=18.9
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCC
Q psy16729 175 VWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDS 209 (238)
Q Consensus 175 ~~~~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~~~ 209 (238)
.+..++-++.|+++.++..+..++.+.++...+.+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~ 100 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQ 100 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 45555666677777777777777777777655433
No 82
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=21.69 E-value=5.2e+02 Score=22.20 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHHHHHh
Q psy16729 121 IVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTY 163 (238)
Q Consensus 121 i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~yl~~~ 163 (238)
+.....++++.+|++. ...+-.+.+..+.+.+|+..-++..
T Consensus 6 ~~~~~~~~~~~~~~~~--~~~lr~~~g~~~vlf~PGy~l~~~l 46 (287)
T PF07760_consen 6 LLVLLALLAILVPDLN--IPPLRVILGFPFVLFLPGYALVAAL 46 (287)
T ss_pred HHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHhccHHHHHHH
Confidence 3444555566677765 5566666667777788888888776
No 83
>KOG2592|consensus
Probab=21.31 E-value=6.4e+02 Score=23.13 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhcCC-----hhHHHhHhhhHHh
Q psy16729 115 YIVRTVIVTAAVGLAVAVPT-----IGPFLGLIGAFCF 147 (238)
Q Consensus 115 ~~~r~~i~~~~~~lAi~iP~-----~~~v~~lvGa~~~ 147 (238)
+.+..++.+...+.+.+||+ +...++..||...
T Consensus 114 W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~F 151 (426)
T KOG2592|consen 114 WFFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALF 151 (426)
T ss_pred HHHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHH
Confidence 45556666777777889997 4455566665553
No 84
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=21.27 E-value=1.3e+02 Score=18.30 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16729 32 NQGMGGVTMIYILLGFLGYLKYGEL 56 (238)
Q Consensus 32 ~~a~~~~~~~Y~~~g~~gY~~fG~~ 56 (238)
.+++.+..++-.+.|...|-+||..
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCC
Confidence 3566777777778888888899853
No 85
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=21.20 E-value=6e+02 Score=22.77 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=13.1
Q ss_pred ceeeccchhhcCCCCCCcc
Q psy16729 8 DSQVMPLENNMQTPNHFVG 26 (238)
Q Consensus 8 ~~~~~~i~~~mk~p~~~~~ 26 (238)
.++..++-++|++|++-..
T Consensus 195 ~avLv~lg~~~~~~~~~~~ 213 (349)
T COG3949 195 VAVLVPLGGRMESRKVSGI 213 (349)
T ss_pred hHhhhhhcccccccchhhh
Confidence 3455677788988886554
No 86
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=21.03 E-value=6.8e+02 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy16729 38 VTMIYILLGFLGYLKYGE 55 (238)
Q Consensus 38 ~~~~Y~~~g~~gY~~fG~ 55 (238)
.......+|..|+..+.+
T Consensus 281 ~~~~~~~ig~~~~~~~~~ 298 (502)
T PRK15419 281 CLAGAVAVGFFGIAYFNE 298 (502)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 334455678888877754
No 87
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=20.39 E-value=97 Score=21.57 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=21.8
Q ss_pred chhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729 14 LENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYG 54 (238)
Q Consensus 14 i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG 54 (238)
+.+++++..+.++ ...+|.+...+.-++.+.+||..|.
T Consensus 42 ~d~~i~kK~k~kK---~iiiS~i~s~lalli~~~~G~g~y~ 79 (84)
T PF09716_consen 42 IDDKIEKKKKNKK---KIIISTIASGLALLIATALGYGYYK 79 (84)
T ss_pred hhHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556665544444 2345555555555777777887764
Done!